RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14005
(226 letters)
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural
genomics, structural genomics conso SGC, CGMP
biosynthesis; 2.08A {Homo sapiens}
Length = 225
Score = 256 bits (656), Expect = 3e-87
Identities = 65/175 (37%), Positives = 92/175 (52%), Gaps = 34/175 (19%)
Query: 39 QVPAENFDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGD 98
V A+ F +VT+ FSDIVGFT I + SP++V+ MLN LY FD + + DVYKVETIGD
Sbjct: 6 VVQAKKFSNVTMLFSDIVGFTAICSQCSPLQVITMLNALYTRFDQQCGELDVYKVETIGD 65
Query: 99 AYMVVSGLPQRNGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLV 158
AY V GL + H +IA M+L ++
Sbjct: 66 AYCVAGGLHKE--------------------------------SDTHAVQIALMALKMME 93
Query: 159 GIEHFKIPHRPNDKLEIRVGINTGPCVAGVVGTTMPRYCLFGDTINTASRMESAG 213
+ PH + +++R+G+++G AGVVG MPRYCLFG+ + A++ ES
Sbjct: 94 LSDEVMSPH--GEPIKMRIGLHSGSVFAGVVGVKMPRYCLFGNNVTLANKFESCS 146
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics,
PSI, protein structure initiative; 2.70A {Mycobacterium
tuberculosis}
Length = 204
Score = 249 bits (638), Expect = 7e-85
Identities = 57/175 (32%), Positives = 89/175 (50%), Gaps = 34/175 (19%)
Query: 39 QVPAENFDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGD 98
+ A+ +D ++ F+DIVGFT ++ ++P ++V L+ LY FD + ++ + K+E GD
Sbjct: 2 NIIADKYDEASVLFADIVGFTERASSTAPADLVRFLDRLYSAFDELVDQHGLEKIEVSGD 61
Query: 99 AYMVVSGLPQRNGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLV 158
+YMVVSG+P+ H +A +LD+
Sbjct: 62 SYMVVSGVPRPRPD--------------------------------HTQALADFALDMTN 89
Query: 159 GIEHFKIPHRPNDKLEIRVGINTGPCVAGVVGTTMPRYCLFGDTINTASRMESAG 213
K P + + +RVG+ TGP VAGVVG+ RYC++GD +N ASRMES
Sbjct: 90 VAAQLKDPR--GNPVPLRVGLATGPVVAGVVGSRRFRYCVWGDAVNVASRMESTD 142
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1,
metal-binding, CGMP biosynthesis, nucleotide-B cyclase,
GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Length = 219
Score = 239 bits (613), Expect = 7e-81
Identities = 64/182 (35%), Positives = 89/182 (48%), Gaps = 42/182 (23%)
Query: 39 QVPAENFDSVTIYFSDIVGFTNISADSSP----MEVVNMLNTLYKLFDSRIRKYD---VY 91
VPA+ +D+VTI FS IVGF + + M++VN+LN LY FD+ VY
Sbjct: 4 PVPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVY 63
Query: 92 KVETIGDAYMVVSGLPQRNGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIAT 151
KVET+GD YM VSGLP+ H I
Sbjct: 64 KVETVGDKYMTVSGLPEP--------------------------------CIHHARSICH 91
Query: 152 MSLDLLVGIEHFKIPHRPNDKLEIRVGINTGPCVAGVVGTTMPRYCLFGDTINTASRMES 211
++LD++ ++ ++I +GI+TG V GV+G MPRYCLFG+T+N SR E+
Sbjct: 92 LALDMMEIAGQVQVDGES---VQITIGIHTGEVVTGVIGQRMPRYCLFGNTVNLTSRTET 148
Query: 212 AG 213
G
Sbjct: 149 TG 150
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK;
2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B*
1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B*
2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B*
3maa_B* 1cul_B*
Length = 220
Score = 235 bits (601), Expect = 6e-79
Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 30/182 (16%)
Query: 39 QVPAENFDSVTIYFSDIVGFTNISADSS----PMEVVNMLNTLYKLFD---SRIRKYDVY 91
++ +++D V + F+ I F +S +E + +LN + FD S+ + V
Sbjct: 6 ELYHQSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVE 65
Query: 92 KVETIGDAYMVVSGLPQRNGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIAT 151
K++TIG YM +GL + +H+G +
Sbjct: 66 KIKTIGSTYMAATGLSAIPSQEHAQEPE---------------------RQYMHIGTMVE 104
Query: 152 MSLDLLVGIEHFKIPHRPNDKLEIRVGINTGPCVAGVVGTTMPRYCLFGDTINTASRMES 211
+ L+ + I + ++RVGIN GP +AGV+G P+Y ++G+T+N ASRM+S
Sbjct: 105 FAYALVGKL--DAINKHSFNDFKLRVGINHGPVIAGVIGAQKPQYDIWGNTVNVASRMDS 162
Query: 212 AG 213
G
Sbjct: 163 TG 164
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A*
1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A*
3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A*
1tl7_A*
Length = 220
Score = 229 bits (585), Expect = 1e-76
Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 34/175 (19%)
Query: 39 QVPAENFDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGD 98
++ + D+V+I F+DI GFT++++ + E+V LN L+ FD + +++ +GD
Sbjct: 26 KIYIQKHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGD 85
Query: 99 AYMVVSGLPQRNGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLV 158
Y VSGLP+ H M +D++
Sbjct: 86 CYYCVSGLPEARAD--------------------------------HAHCCVEMGMDMIE 113
Query: 159 GIEHFKIPHRPNDKLEIRVGINTGPCVAGVVGTTMPRYCLFGDTINTASRMESAG 213
I + + +RVGI++G GV+G ++ ++ + + A+ ME+ G
Sbjct: 114 AISLVR--EMTGVNVNMRVGIHSGRVHCGVLGLRKWQFDVWSNDVTLANHMEAGG 166
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic,
lyase, membrane, transmembrane; 2.55A {Chlamydomonas
reinhardtii} PDB: 3et6_B
Length = 190
Score = 224 bits (574), Expect = 2e-75
Identities = 68/175 (38%), Positives = 93/175 (53%), Gaps = 35/175 (20%)
Query: 40 VPAENFDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKY-DVYKVETIGD 98
PA+ T+ FSDIVGFT I++ SSP+EV ++L+ LY+ FD+ I +Y +YKVETIGD
Sbjct: 2 APAQEHPEATVLFSDIVGFTEIASRSSPLEVXSLLDELYQRFDAAIEEYPQLYKVETIGD 61
Query: 99 AYMVVSGLPQRNGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLV 158
AYMVV + H + +L +
Sbjct: 62 AYMVVCNVTVPCDD--------------------------------HADVLLEFALRMHE 89
Query: 159 GIEHFKIPHRPNDKLEIRVGINTGPCVAGVVGTTMPRYCLFGDTINTASRMESAG 213
++ + + IRVG+++GP VAGVVG MPR+ LFGDT+NTASRMES G
Sbjct: 90 EA--SRVASSLGEPVRIRVGMHSGPVVAGVVGRKMPRFXLFGDTVNTASRMESHG 142
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes,
adenylyl cyclases, monomer-dimer, catalysis, lyase;
1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Length = 235
Score = 153 bits (388), Expect = 1e-46
Identities = 43/203 (21%), Positives = 70/203 (34%), Gaps = 61/203 (30%)
Query: 39 QVPAENFDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGD 98
+ P E D VT+ F+DI T + A + P + + + +++ S I +Y Y+V+T+GD
Sbjct: 4 RAPKEPTDPVTLIFTDIESSTALWA-AHPDLMPDAVAAHHRMVRSLIGRYKCYEVKTVGD 62
Query: 99 AYMVVSGLPQRNGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLD--- 155
++M+ S P + E+ L
Sbjct: 63 SFMIASKSPFAAVQ--------------------------------LAQELQLCFLHHDW 90
Query: 156 ----LLVGIEHFKIPHRPND--------------------KLEIRVGINTGPCVAGVVGT 191
L F+ + L +RVGI+TG C
Sbjct: 91 GTNALDDSYREFEEQRAEGECEYTPPTAHMDPEVYSRLWNGLRVRVGIHTGLCDIRHDEV 150
Query: 192 TMPRYCLFGDTINTASRMESAGD 214
T Y +G T N A+R ES +
Sbjct: 151 T-KGYDYYGRTPNMAARTESVAN 172
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase;
HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB:
1y11_A*
Length = 407
Score = 142 bits (359), Expect = 1e-40
Identities = 35/176 (19%), Positives = 58/176 (32%), Gaps = 53/176 (30%)
Query: 39 QVPAENFDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGD 98
P VT+ F+D+VGFT + S E+ ++ L L + V+ ++TIGD
Sbjct: 207 GKPLPGARQVTVAFADLVGFTQLGEVVSAEELGHLAGRLAGLAR-DLTAPPVWFIKTIGD 265
Query: 99 AYMVVSGLPQRNGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLV 158
A M+V P + L L+
Sbjct: 266 AVMLVCPDPA---------------------------------------PLLDTVLKLVE 286
Query: 159 GIEHFKIPHRPNDKLEIRVGINTGPCVAGVVGTTMPRYCLFGDTINTASRMESAGD 214
++ N+ +R G+ +G V+ FG +N ASR+
Sbjct: 287 VVD------TDNNFPRLRAGVASGMAVSRA-------GDWFGSPVNVASRVTGVAR 329
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase,
lyase; 2.31A {Synechocystis SP}
Length = 208
Score = 85.3 bits (212), Expect = 1e-20
Identities = 39/173 (22%), Positives = 66/173 (38%), Gaps = 45/173 (26%)
Query: 48 VTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKY----DVYKVETIGDAYMVV 103
+TI SD+ GFT+ S +P EVV +LN + I + D + +GD +V+
Sbjct: 15 ITILTSDLRGFTSTSEGLNPEEVVKVLNIYFGKMADVITHHGGTIDEF----MGDGILVL 70
Query: 104 SGLPQRNGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVGIEHF 163
G P A++ +++ + +
Sbjct: 71 FGAPTSQQDDALRAVA--------------------------------CGVEMQLALREV 98
Query: 164 --KIPHRPNDKLEIRVGINTGPCVAGVVGTTMPR--YCLFGDTINTASRMESA 212
++ LE+ +GINTG V G +G+ R Y + G +N R+ES
Sbjct: 99 NQQVTGLGLQPLEMGIGINTGEVVVGNIGSEK-RTKYGVVGAQVNLTYRIESY 150
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology
domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis}
PDB: 1ybu_A*
Length = 184
Score = 81.2 bits (201), Expect = 2e-19
Identities = 26/167 (15%), Positives = 50/167 (29%), Gaps = 50/167 (29%)
Query: 48 VTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSGLP 107
TI F+DIVG T +A ++L+ + I+++ +V T GD ++
Sbjct: 18 ATIMFTDIVGSTQHAAALGDDRWRDLLDNHDTIVCHEIQRFGGREVNTAGDGFVATFT-- 75
Query: 108 QRNGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVGIEHFKIPH 167
SP AI+ +
Sbjct: 76 -----SPSAAIAC--------------------------------------ADDIVDAVA 92
Query: 168 RPNDKLEIRVGINTGPCVAGVVGTTMPRYCLFGDTINTASRMESAGD 214
+E+R+GI+ G + G ++ +R+ +
Sbjct: 93 ALG--IEVRIGIHAGEVEVRDASH---GTDVAGVAVHIGARVCALAG 134
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family;
alpha-beta fold, structural genomics, PSI-2, protein
structu initiative; 2.60A {Ruegeria pomeroyi}
Length = 189
Score = 80.8 bits (200), Expect = 4e-19
Identities = 25/165 (15%), Positives = 54/165 (32%), Gaps = 46/165 (27%)
Query: 48 VTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKYDVYKVETIGDAYMVVSGLP 107
I +D+ G++ + + + +L D I + V+T GD +
Sbjct: 8 CAILAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFD-- 65
Query: 108 QRNGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVGIEHFKIPH 167
+ A+ +L++ ++ +
Sbjct: 66 -----TAQAALR--------------------------------CALEIQQAMQQREEDT 88
Query: 168 RPNDKLEIRVGINTGPCVAGVVGTTMPRYCLFGDTINTASRMESA 212
++++ R+GIN G V +FGD +N A+R+E+
Sbjct: 89 PRKERIQYRIGINIGDIVLE-------DGDIFGDAVNVAARLEAI 126
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa}
Length = 198
Score = 79.5 bits (197), Expect = 1e-18
Identities = 45/174 (25%), Positives = 65/174 (37%), Gaps = 44/174 (25%)
Query: 48 VTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKY----DVYKVETIGDAYMVV 103
+T++FSDI GFT +S + + ++LN KY D + +GD MV
Sbjct: 10 LTVFFSDIRGFTELSEELEAEALTDLLNNYLNEMSKIALKYGGTIDKF----VGDCVMVF 65
Query: 104 SGLPQRNGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVGIEHF 163
G P G +M + + ++
Sbjct: 66 FGDPSTQGAKK------------------------------DAVAAVSMGIAMRKHMKVL 95
Query: 164 KIPHRPN---DKLEIRVGINTGPCVAGVVGTTMPR--YCLFGDTINTASRMESA 212
+ R LEIR+GINTG C G G R Y + G +N ASR+ESA
Sbjct: 96 RQQWRAQGITKPLEIRMGINTGYCTVGNFGADT-RMDYTIIGREVNLASRLESA 148
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase;
HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1
PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Length = 219
Score = 77.2 bits (191), Expect = 1e-17
Identities = 39/179 (21%), Positives = 62/179 (34%), Gaps = 49/179 (27%)
Query: 48 VTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFDSRIRKY----DVYKVETIGDAYMVV 103
+TI FSDIVGFT +S V +LN + + D + +GDA M +
Sbjct: 28 ITILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVDKF----VGDAIMAL 83
Query: 104 SGLPQRNGKSPGTAISFYIRNIGSFGGLGTKGFFRPFSGTLHVGEIATMSLDLLVGIEHF 163
G P+ S V + +LV +E
Sbjct: 84 YGAPEEMSPSE------------------------------QVRRAIATARQMLVALEKL 113
Query: 164 --------KIPHRPNDKLEIRVGINTGPCVAGVVGTTMPR--YCLFGDTINTASRMESA 212
+ + R GI+ G V G+ G+ R + G ++N A+R++ A
Sbjct: 114 NQGWQERGLVGRNEVPPVRFRCGIHQGMAVVGLFGSQE-RSDFTAIGPSVNIAARLQEA 171
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.011
Identities = 22/179 (12%), Positives = 45/179 (25%), Gaps = 42/179 (23%)
Query: 44 NFDSVTIYFSDIVGFTNISADSSPMEVVNMLNTLYKLFD----------SRIRKYDVYKV 93
V + + N+ +SP V+ ML L D S I+ ++
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK----LRI 227
Query: 94 ETIGDA---YMVVSGLPQ-----RNGKSPGTAISFYI--------RNIGSFGGLGTKGFF 137
+I + N ++ +F + R L
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 138 RPFSGTLHVGEIATMSLDLL---VGIEHFKIPHRPNDKLEIRVGINTGPCVAGVVGTTM 193
+ LL + +P E+ + N P ++ ++
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR------EV-LTTN--PRRLSIIAESI 337
Score = 31.0 bits (69), Expect = 0.39
Identities = 8/85 (9%), Positives = 23/85 (27%), Gaps = 15/85 (17%)
Query: 22 DLSGNINRVHLIPFVDFQVPAENFDSVTIYFSDIVGFTNISADSSPME-------VVNML 74
D H I + + ++ + + P E ++++
Sbjct: 279 DFLSAATTTH-ISLDHHSMTLTPDEVKSL-LLK---YLDCRPQDLPREVLTTNPRRLSII 333
Query: 75 NTLYKLFDSRI---RKYDVYKVETI 96
+ + + + K+ TI
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTI 358
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.031
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 6/29 (20%)
Query: 2 KKKKKKQERSELKP--DESYPHDLSGNIN 28
K+ KK + + LK D+S P L+ I
Sbjct: 19 KQALKKLQ-ASLKLYADDSAPA-LA--IK 43
Score = 27.6 bits (60), Expect = 2.2
Identities = 8/45 (17%), Positives = 12/45 (26%), Gaps = 21/45 (46%)
Query: 75 NTLYKLFDSRIRKYDVYKVETIGDAYMVVSGLPQRNGKSPGTAIS 119
L KL + ++ Y A +P AI
Sbjct: 20 QALKKL-QASLKLY----------A-------D---DSAPALAIK 43
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.16
Identities = 44/232 (18%), Positives = 67/232 (28%), Gaps = 101/232 (43%)
Query: 9 ERSELKPDESYPHDLSGNINRVHLIPFVDFQVPA---------ENFDS-----VTIYFSD 54
+ P E + L G + V A E+F +T+ F
Sbjct: 254 KLLGFTPGELRSY-LKGATGHSQGL------VTAVAIAETDSWESFFVSVRKAITVLF-- 304
Query: 55 IVGF------------TNISADS--------SPMEVVNMLNTLYKLFDSRIRKYDVY--- 91
+G +I DS SPM ++ L + + K + +
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ--EQVQDYVNKTNSHLPA 362
Query: 92 --KVETI----GDAYMVVSGLPQ---------RNGKSPGT-----------AISFYIR-- 123
+VE I G +VVSG PQ R K+P + F R
Sbjct: 363 GKQVE-ISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL 421
Query: 124 NIGSFGGLGTKGFFRPFSGTLH----VGEIATMSLDLLVGIEHF-----KIP 166
+ S PF H V ++ DL+ F +IP
Sbjct: 422 PVAS-----------PF----HSHLLVPASDLINKDLVKNNVSFNAKDIQIP 458
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR,
tetratricopeptide repeat like, TPR-like, transport
protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Length = 158
Score = 27.4 bits (60), Expect = 2.4
Identities = 11/48 (22%), Positives = 15/48 (31%)
Query: 5 KKKQERSELKPDESYPHDLSGNINRVHLIPFVDFQVPAENFDSVTIYF 52
K +E + P + GN D NFD T +F
Sbjct: 67 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFF 114
>3co5_A Putative two-component system transcriptional RES regulator;
structural genomics, APC89341.1; 2.40A {Neisseria
gonorrhoeae}
Length = 143
Score = 26.4 bits (59), Expect = 4.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 142 GTLHVGEIATMSLDLLVGI 160
G L+VG+IA S ++ GI
Sbjct: 77 GVLYVGDIAQYSRNIQTGI 95
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.140 0.412
Gapped
Lambda K H
0.267 0.0816 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,532,507
Number of extensions: 212485
Number of successful extensions: 411
Number of sequences better than 10.0: 1
Number of HSP's gapped: 386
Number of HSP's successfully gapped: 40
Length of query: 226
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 136
Effective length of database: 4,188,903
Effective search space: 569690808
Effective search space used: 569690808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.8 bits)