BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14007
(198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 146 bits (368), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 113/175 (64%), Gaps = 2/175 (1%)
Query: 1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
+ R +HWA +G ++V+FLL+ PV+ KDD +PL +AA+AG+ EIV+ L+ GA
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQ 98
Query: 61 VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
VNA G + L YA SK EIA +L+ AN + +D AT +HRAA++G ++ +L
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL 158
Query: 121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
L + NI D GNTPLH AC+E+R+ +AKLLV GA + I+NKE+KTPL +
Sbjct: 159 LYYK--ASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQV 211
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H+AA R ++ LL+ + D KD T + AAA G L+++ +L+ A N +
Sbjct: 110 LHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQD 169
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL 121
G++ L AC + E A+LL+ A++ I++ TPL + A G+ ++K ++
Sbjct: 170 TEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPL-QVAKGGLGLILKRMV 224
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 146 bits (368), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 113/175 (64%), Gaps = 2/175 (1%)
Query: 1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
+ R +HWA +G ++V+FLL+ PV+ KDD +PL +AA+AG+ EIV+ L+ GA
Sbjct: 40 DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQ 99
Query: 61 VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
VNA G + L YA SK EIA +L+ AN + +D AT +HRAA++G ++ +L
Sbjct: 100 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL 159
Query: 121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
L + NI D GNTPLH AC+E+R+ +AKLLV GA + I+NKE+KTPL +
Sbjct: 160 LYYK--ASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQV 212
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H+AA R ++ LL+ + D KD T + AAA G L+++ +L+ A N +
Sbjct: 111 LHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQD 170
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL 121
G++ L AC + E A+LL+ A++ I++ TPL + A G+ ++K ++
Sbjct: 171 TEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPL-QVAKGGLGLILKRMV 225
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 145 bits (365), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 112/175 (64%), Gaps = 2/175 (1%)
Query: 1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
+ R +HWA +G ++V+FLL+ PV+ KDD +PL +AA+AG+ EIV+ L+ GA
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAH 98
Query: 61 VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
VNA G + L YA SK EIA +L+ AN + +D AT +HRAA++G +V +L
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL 158
Query: 121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
L + NI D GNTPLH AC+E+R+ +AK LV GA + I+NKE+KTPL +
Sbjct: 159 LFYK--ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQV 211
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H+AA R ++ LL+ + D KD + T + AAA G L++V +L+ A N +
Sbjct: 110 LHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQD 169
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
G++ L AC + E A+ L+ A++ I++ TPL + A G+ ++K L
Sbjct: 170 TEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPL-QVAKGGLGLILKRL 223
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 143 bits (361), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 111/175 (63%), Gaps = 2/175 (1%)
Query: 1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
+ R +HWA +G ++V+FLL+ PV+ KDD +PL +AA+AG EIV+ L+ GA
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAH 98
Query: 61 VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
VNA G + L YA SK EIA +L+ AN + +D AT +HRAA++G +V +L
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL 158
Query: 121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
L + NI D GNTPLH AC+E+R+ +AK LV GA + I+NKE+KTPL +
Sbjct: 159 LFYK--ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQV 211
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H+AA R ++ LL+ + D KD + T + AAA G L++V +L+ A N +
Sbjct: 110 LHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQD 169
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
G++ L AC + E A+ L+ A++ I++ TPL + A G+ ++K L
Sbjct: 170 TEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPL-QVAKGGLGLILKRL 223
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 117 bits (294), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 93/155 (60%), Gaps = 2/155 (1%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
AA +G +D V L++N + V+ D RTPL AA G EIV+LLIS GADVNAK G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
+ L YA +G KEI +LLI A+VN +D G TPLH AA +G +VKLL+++ D
Sbjct: 71 RTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISK--GAD 128
Query: 129 VNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLD 163
VN +D+ G TPL A E KLL + G L+
Sbjct: 129 VNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWLE 163
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 84/137 (61%), Gaps = 2/137 (1%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
LI AA G + V+ LI NGADVNA G + L YA +G KEI +LLI A+VN +D
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
G TPLH AA +G +VKLL+++ DVN D+ G TPLHYA +E KLL+
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLISK--GADVNAKDSDGRTPLHYAAKEGHKEIVKLLISK 125
Query: 159 GARLDIQNKEKKTPLDL 175
GA ++ + + +TPLDL
Sbjct: 126 GADVNTSDSDGRTPLDL 142
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 71/121 (58%)
Query: 3 RLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVN 62
R +H+AA G +++V L+ + V+ KD RTPL AA G EIV+LLIS GADVN
Sbjct: 38 RTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 97
Query: 63 AKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLT 122
AK G + L YA +G KEI +LLI A+VN D G TPL A G +VKLL
Sbjct: 98 AKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
Query: 123 Q 123
Q
Sbjct: 158 Q 158
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 3 RLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA 59
R +H+AA G +++V L+ + V+ D RTPL LA G EIV+LL G
Sbjct: 104 RTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 113 bits (282), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 91/155 (58%), Gaps = 2/155 (1%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
AA +G +D V L++N + V+ D RTPL AA G E+V+LLIS GADVNAK G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
+ L +A G KE+ +LLI A+VN +D G TPLH AA G VVKLL+++ D
Sbjct: 71 RTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK--GAD 128
Query: 129 VNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLD 163
VN +D+ G TPL A E KLL + G L+
Sbjct: 129 VNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 81/137 (59%), Gaps = 2/137 (1%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
LI AA G + V+ LI NGADVNA G + L +A G KE+ +LLI A+VN +D
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
G TPLH AA G VVKLL+++ DVN D+ G TPLH+A E KLL+
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLISK--GADVNAKDSDGRTPLHHAAENGHKEVVKLLISK 125
Query: 159 GARLDIQNKEKKTPLDL 175
GA ++ + + +TPLDL
Sbjct: 126 GADVNTSDSDGRTPLDL 142
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 70/121 (57%)
Query: 3 RLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVN 62
R +H AA +G ++VV L+ + V+ KD RTPL AA G E+V+LLIS GADVN
Sbjct: 38 RTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN 97
Query: 63 AKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLT 122
AK G + L +A G KE+ +LLI A+VN D G TPL A G VVKLL
Sbjct: 98 AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEK 157
Query: 123 Q 123
Q
Sbjct: 158 Q 158
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 3 RLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA 59
R +H AA +G ++VV L+ + V+ D RTPL LA G E+V+LL G
Sbjct: 104 RTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 88/155 (56%), Gaps = 2/155 (1%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
AA +G +D V LL+N + V+ D +TPL LAA G E+V+LL+S GAD NAK G
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
+ L A G KE+ +LL+ A+ N +D G TPLH AA G VVKLLL+Q D
Sbjct: 71 KTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQ--GAD 128
Query: 129 VNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLD 163
N +D+ G TPL A E KLL + G L+
Sbjct: 129 PNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 76/137 (55%), Gaps = 2/137 (1%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
LI AA G + V+ L+ NGADVNA G + L A G KE+ +LL+ A+ N +D
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
G TPLH AA G VVKLLL+Q D N D+ G TPLH A E KLL+
Sbjct: 68 SDGKTPLHLAAENGHKEVVKLLLSQ--GADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQ 125
Query: 159 GARLDIQNKEKKTPLDL 175
GA + + + +TPLDL
Sbjct: 126 GADPNTSDSDGRTPLDL 142
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 66/118 (55%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H AA +G ++VV LL + + KD +TPL LAA G E+V+LL+S GAD NAK
Sbjct: 41 LHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 100
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQ 123
G + L A G KE+ +LL+ A+ N D G TPL A G VVKLL Q
Sbjct: 101 SDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA 59
+H AA +G ++VV LL + + D RTPL LA G E+V+LL G
Sbjct: 107 LHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 87/155 (56%), Gaps = 2/155 (1%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
AA +G +D V LL+N + + D RTPL AA G EIV+LL+S GAD NAK G
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
+ L YA G KEI +LL+ A+ N +D G TPLH AA G +VKLLL++ D
Sbjct: 71 RTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK--GAD 128
Query: 129 VNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLD 163
N +D+ G TPL A E KLL + G L+
Sbjct: 129 PNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWLE 163
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 77/137 (56%), Gaps = 2/137 (1%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
LI AA G + V+ L+ NGAD NA G + L YA G KEI +LL+ A+ N +D
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
G TPLH AA G +VKLLL++ D N D+ G TPLHYA E KLL+
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLLSK--GADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK 125
Query: 159 GARLDIQNKEKKTPLDL 175
GA + + + +TPLDL
Sbjct: 126 GADPNTSDSDGRTPLDL 142
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 68/121 (56%)
Query: 3 RLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVN 62
R +H+AA +G +++V LL + + KD RTPL AA G EIV+LL+S GAD N
Sbjct: 38 RTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 97
Query: 63 AKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLT 122
AK G + L YA G KEI +LL+ A+ N D G TPL A G +VKLL
Sbjct: 98 AKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
Query: 123 Q 123
Q
Sbjct: 158 Q 158
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 3 RLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA 59
R +H+AA +G +++V LL + + D RTPL LA G EIV+LL G
Sbjct: 104 RTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 86/137 (62%), Gaps = 2/137 (1%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L+ AA AG+ + VR+L++NGADVNAK G++ L A +G EI E+L+ A+VN +D
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
G TPLH AA +G +V++LL + DVN D G TPLH A E L ++L++
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLL--KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 123
Query: 159 GARLDIQNKEKKTPLDL 175
GA ++ Q+K KTP DL
Sbjct: 124 GADVNAQDKFGKTPFDL 140
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 82/137 (59%), Gaps = 2/137 (1%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
AA +G++D V L+ N + V+ KD TPL LAA G LEIV +L+ GADVNAK G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
++ L A +G EI E+L+ A+VN +D G TPLH AA +G +V++LL + D
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL--KAGAD 126
Query: 129 VNITDAYGNTPLHYACE 145
VN D +G TP A +
Sbjct: 127 VNAQDKFGKTPFDLAID 143
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 66/115 (57%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H AA G ++V+ LLK + V+ KD TPL LAA G LEIV +L+ GADVNAK
Sbjct: 39 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 98
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
G++ L A +G EI E+L+ A+VN QD G TP A G + ++L
Sbjct: 99 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 86/137 (62%), Gaps = 2/137 (1%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L+ AA AG+ + VR+L++NGADVNAK G++ L A +G EI E+L+ A+VN +D
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
G TPLH AA +G +V++LL + DVN D G TPLH A E L ++L++
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLL--KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 123
Query: 159 GARLDIQNKEKKTPLDL 175
GA ++ Q+K KTP DL
Sbjct: 124 GADVNAQDKFGKTPFDL 140
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 87/150 (58%), Gaps = 2/150 (1%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
AA +G++D V L+ N + V+ KD TPL LAA G LEIV +L+ GADVNAK G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
++ L A +G EI E+L+ A+VN +D G TPLH AA +G +V++LL + D
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL--KAGAD 126
Query: 129 VNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
VN D +G TP A E A++L +
Sbjct: 127 VNAQDKFGKTPFDLAIREGHEDIAEVLQKA 156
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 67/115 (58%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H AA G ++V+ LLK + V+ KD TPL LAA G LEIV +L+ GADVNAK
Sbjct: 39 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 98
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
G++ L A +G EI E+L+ A+VN QD G TP A +G + ++L
Sbjct: 99 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 85/137 (62%), Gaps = 2/137 (1%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L+ AA AG+ + VR+L++NGADVNA+ D G + L A KG EI E+L+ + A+VN D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD 77
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
G TPLH AA G +V++LL DVN TD YG TPLH A + L ++L++
Sbjct: 78 KMGDTPLHLAALYGHLEIVEVLLKNG--ADVNATDTYGFTPLHLAADAGHLEIVEVLLKY 135
Query: 159 GARLDIQNKEKKTPLDL 175
GA ++ Q+K KT D+
Sbjct: 136 GADVNAQDKFGKTAFDI 152
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 79/132 (59%), Gaps = 2/132 (1%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
AA +G++D V L+ N + V+ +DD+ +TPL LAA G LEIV +L+ +GADVNA G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
+ L A G EI E+L+ N A+VN D G TPLH AA G +V++LL + D
Sbjct: 81 DTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLL--KYGAD 138
Query: 129 VNITDAYGNTPL 140
VN D +G T
Sbjct: 139 VNAQDKFGKTAF 150
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 68/121 (56%), Gaps = 2/121 (1%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H AA+ G ++V+ LLK+ + V+ D TPL LAA G LEIV +L+ NGADVNA
Sbjct: 51 LHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATD 110
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
G + L A G EI E+L+ A+VN QD G T + G + ++L Q+L
Sbjct: 111 TYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL--QKL 168
Query: 126 D 126
+
Sbjct: 169 N 169
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 105 LHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDI 164
L AA G V++L+ DVN D G TPLH A + L ++L++ GA ++
Sbjct: 18 LLEAARAGQDDEVRILMANG--ADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNA 75
Query: 165 QNKEKKTPLDLLPL 178
+K TPL L L
Sbjct: 76 ADKMGDTPLHLAAL 89
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 100 bits (248), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 85/137 (62%), Gaps = 2/137 (1%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L+ AA AG+ + VR+L++NGADVNA D G + L A G EI E+L+ + A+VN +D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
G TPLH AA G +V++LL + DVN DAYG TPLH A + L ++L++
Sbjct: 78 TDGWTPLHLAADNGHLEIVEVLL--KYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKH 135
Query: 159 GARLDIQNKEKKTPLDL 175
GA ++ Q+K KT D+
Sbjct: 136 GADVNAQDKFGKTAFDI 152
Score = 93.2 bits (230), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
AA +G++D V L+ N + V+ DD TPL LAA G EIV +L+ +GADVNA+ G
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
+ L A G EI E+L+ A+VN QD G TPLH AA +G +V++LL D
Sbjct: 81 WTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHG--AD 138
Query: 129 VNITDAYGNTPL 140
VN D +G T
Sbjct: 139 VNAQDKFGKTAF 150
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 66/115 (57%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H AA G ++V+ LLK+ + V+ +D TPL LAA G LEIV +L+ GADVNA+
Sbjct: 51 LHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQD 110
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
G + L A +G EI E+L+ + A+VN QD G T + G + ++L
Sbjct: 111 AYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 86/137 (62%), Gaps = 2/137 (1%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L+ AA AG+ + VR+L++NGADVNA + G++ L A S G EI E+L+ N A+VN D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
+ G TPLH AA+ G +V++LL DVN D G+TPLH A + L ++L++
Sbjct: 78 LTGITPLHLAAATGHLEIVEVLLKHG--ADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKH 135
Query: 159 GARLDIQNKEKKTPLDL 175
GA ++ Q+K KT D+
Sbjct: 136 GADVNAQDKFGKTAFDI 152
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 77/132 (58%), Gaps = 2/132 (1%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
AA +G++D V L+ N + V+ D+ TPL LAA+ G LEIV +L+ NGADVNA G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
+ L A + G EI E+L+ + A+VN D G TPLH AA G +V++LL D
Sbjct: 81 ITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHG--AD 138
Query: 129 VNITDAYGNTPL 140
VN D +G T
Sbjct: 139 VNAQDKFGKTAF 150
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 69/115 (60%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H AA +G ++V+ LLKN + V+ D T TPL LAAA G LEIV +L+ +GADVNA
Sbjct: 51 LHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYD 110
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
+ GH+ L A G EI E+L+ + A+VN QD G T + G + ++L
Sbjct: 111 NDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 79/132 (59%), Gaps = 2/132 (1%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
AA +G++D V L+ N + V+ +D T TPL LAA G LEIV +L+ NGADVNAK G
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
+ L A +G EI E+L+ N A+VN D G TPLH AA +G +V++LL D
Sbjct: 81 VTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKN--GAD 138
Query: 129 VNITDAYGNTPL 140
VN D +G T
Sbjct: 139 VNAQDKFGKTAF 150
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 86/137 (62%), Gaps = 2/137 (1%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L+ AA AG+ + VR+L++NGADVNA+ G + L A G EI E+L+ N A+VN +D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
G TPLH AA +G +V++LL DVN +D++G TPLH A + L ++L++
Sbjct: 78 SLGVTPLHLAARRGHLEIVEVLLKN--GADVNASDSHGFTPLHLAAKRGHLEIVEVLLKN 135
Query: 159 GARLDIQNKEKKTPLDL 175
GA ++ Q+K KT D+
Sbjct: 136 GADVNAQDKFGKTAFDI 152
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 66/115 (57%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H AA G ++V+ LLKN + V+ KD TPL LAA G LEIV +L+ NGADVNA
Sbjct: 51 LHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASD 110
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
G + L A +G EI E+L+ N A+VN QD G T + G + ++L
Sbjct: 111 SHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 85/137 (62%), Gaps = 2/137 (1%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L+ AA AG+ + VR+L++NGADVNAK G++ L A +G EI E+L+ A+VN +D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
G TPLH AA +G +V++LL + DVN D G TPLH A E L ++L++
Sbjct: 78 KDGYTPLHLAAREGHLEIVEVLL--KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 135
Query: 159 GARLDIQNKEKKTPLDL 175
GA ++ Q+K KT D+
Sbjct: 136 GADVNAQDKFGKTAFDI 152
Score = 96.7 bits (239), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 79/132 (59%), Gaps = 2/132 (1%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
AA +G++D V L+ N + V+ KD TPL LAA G LEIV +L+ GADVNAK G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
++ L A +G EI E+L+ A+VN +D G TPLH AA +G +V++LL + D
Sbjct: 81 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL--KAGAD 138
Query: 129 VNITDAYGNTPL 140
VN D +G T
Sbjct: 139 VNAQDKFGKTAF 150
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 65/115 (56%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H AA G ++V+ LLK + V+ KD TPL LAA G LEIV +L+ GADVNAK
Sbjct: 51 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 110
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
G++ L A +G EI E+L+ A+VN QD G T + G + ++L
Sbjct: 111 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 85/137 (62%), Gaps = 2/137 (1%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L+ AA AG+ + VR+L++NGADVNA+ G + L A G EI E+L+ N A+VN D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
G+TPLH AA +G +V++LL + DVN D G+TPLH A + L ++L++
Sbjct: 78 FSGSTPLHLAAKRGHLEIVEVLL--KYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKY 135
Query: 159 GARLDIQNKEKKTPLDL 175
GA ++ Q+K KT D+
Sbjct: 136 GADVNAQDKFGKTAFDI 152
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 77/132 (58%), Gaps = 2/132 (1%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
AA +G++D V L+ N + V+ +D TPL LAA G LEIV +L+ NGADVNA G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
+ L A +G EI E+L+ A+VN D G+TPLH AA G +V++LL + D
Sbjct: 81 STPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLL--KYGAD 138
Query: 129 VNITDAYGNTPL 140
VN D +G T
Sbjct: 139 VNAQDKFGKTAF 150
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 63/115 (54%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H AA G ++V+ LLKN + V+ D + TPL LAA G LEIV +L+ GADVNA
Sbjct: 51 LHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADD 110
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
G + L A G EI E+L+ A+VN QD G T + G + ++L
Sbjct: 111 TIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 71/125 (56%), Gaps = 2/125 (1%)
Query: 36 RTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVN 95
RTPL LAA G LE+V+LL+ GADVNAK G + L A G E+ +LL+ A+VN
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 96 IQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLL 155
+D G TPLH AA G VVKLLL DVN D G TPLH A L KLL
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 156 VRCGA 160
+ GA
Sbjct: 121 LEAGA 125
Score = 96.3 bits (238), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 73/121 (60%)
Query: 1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
N R +H AA +G +VV LL+ + V+ KD RTPL LAA G LE+V+LL+ GAD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 61 VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
VNAK G + L A G E+ +LL+ A+VN +D G TPLH AA G VVKLL
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 121 L 121
L
Sbjct: 121 L 121
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
Query: 68 GHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDI 127
G + L A G E+ +LL+ A+VN +D G TPLH AA G VVKLLL
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA--GA 59
Query: 128 DVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
DVN D G TPLH A L KLL+ GA ++ ++K +TPL L
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHL 107
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 37/59 (62%)
Query: 1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA 59
N R +H AA +G +VV LL+ + V+ KD RTPL LAA G LE+V+LL+ GA
Sbjct: 67 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 96.7 bits (239), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 85/137 (62%), Gaps = 2/137 (1%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L+ AA AG+ + VR+LI+NGADVNA + G + L A G EI E+L+ + A+V+ D
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
V G TPLH AA G +V++LL + DVN D G+TPLH A +E L ++L++
Sbjct: 78 VYGFTPLHLAAMTGHLEIVEVLL--KYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKY 135
Query: 159 GARLDIQNKEKKTPLDL 175
GA ++ Q+K KT D+
Sbjct: 136 GADVNAQDKFGKTAFDI 152
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 80/132 (60%), Gaps = 2/132 (1%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
AA +G++D V L+ N + V+ D+T TPL LAA +G LEIV +L+ +GADV+A G
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
+ L A G EI E+L+ A+VN D+ G+TPLH AA +G +V++LL + D
Sbjct: 81 FTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLL--KYGAD 138
Query: 129 VNITDAYGNTPL 140
VN D +G T
Sbjct: 139 VNAQDKFGKTAF 150
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 61/107 (57%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H AA+SG ++V+ LLK+ + VD D TPL LAA G LEIV +L+ GADVNA
Sbjct: 51 LHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFD 110
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQG 112
G + L A +G EI E+L+ A+VN QD G T + G
Sbjct: 111 MTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNG 157
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 78/132 (59%), Gaps = 2/132 (1%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
AA +GR+D V L+ N + V+ +D + TPL LAA G LEIV +L+ NGADVNA G
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
+ L+ A G EI E+L+ N A+VN D+ G TPLH AA G +V++LL D
Sbjct: 81 MTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN--GAD 138
Query: 129 VNITDAYGNTPL 140
VN D +G T
Sbjct: 139 VNAQDKFGKTAF 150
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 80/137 (58%), Gaps = 2/137 (1%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L+ AA AG+ + VR+L++NGADVNA+ G + L A G EI E+L+ N A+VN D
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
G TPL AA G +V++LL DVN D G+TPLH A L ++L++
Sbjct: 78 HAGMTPLRLAALFGHLEIVEVLLKN--GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN 135
Query: 159 GARLDIQNKEKKTPLDL 175
GA ++ Q+K KT D+
Sbjct: 136 GADVNAQDKFGKTAFDI 152
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 70/121 (57%), Gaps = 2/121 (1%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H AA +G ++V+ LLKN + V+ D TPL LAA G LEIV +L+ NGADVNA
Sbjct: 51 LHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAND 110
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
GH+ L A G EI E+L+ N A+VN QD G T + G + ++L Q+L
Sbjct: 111 MEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL--QKL 168
Query: 126 D 126
+
Sbjct: 169 N 169
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 105 LHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDI 164
L AA G V++L+ DVN DA G TPLH A L ++L++ GA ++
Sbjct: 18 LLEAARAGRDDEVRILMAN--GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA 75
Query: 165 QNKEKKTPLDLLPL 178
+ TPL L L
Sbjct: 76 VDHAGMTPLRLAAL 89
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 84/147 (57%), Gaps = 2/147 (1%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
AA +G++D V L+ N + V+ DD TPL LAAA G+LEIV +L+ NGADVNA G
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG 72
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
+ L A G EI E+L+ + A+VN D G TPLH AA G +V++LL D
Sbjct: 73 ITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHG--AD 130
Query: 129 VNITDAYGNTPLHYACEEKRLTDAKLL 155
VN DA G T + + + A++L
Sbjct: 131 VNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 81/137 (59%), Gaps = 2/137 (1%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L+ AAAAG+ + VR+L++NGADVNA D G + L A + G EI E+L+ N A+VN D
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
G TPLH AA G +V++LL DVN D G TPLH A +L ++L++
Sbjct: 70 SAGITPLHLAAYDGHLEIVEVLLKHG--ADVNAYDRAGWTPLHLAALSGQLEIVEVLLKH 127
Query: 159 GARLDIQNKEKKTPLDL 175
GA ++ Q+ T D+
Sbjct: 128 GADVNAQDALGLTAFDI 144
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 68/115 (59%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H AA +G+ ++V+ LLKN + V+ D TPL LAA G LEIV +L+ +GADVNA
Sbjct: 43 LHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYD 102
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
G + L A G EI E+L+ + A+VN QD G T + +QG + ++L
Sbjct: 103 RAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 2/105 (1%)
Query: 75 ACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDA 134
A + G + +L+ N A+VN D G TPLH AA+ G +V++LL DVN +D+
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNG--ADVNASDS 70
Query: 135 YGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLP 179
G TPLH A + L ++L++ GA ++ ++ TPL L L
Sbjct: 71 AGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALS 115
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 78/132 (59%), Gaps = 2/132 (1%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
AA +G++D V L+ N + V+ D+T TPL LAA +G LEIV +L+ +GADV+A G
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
++ L A G EI E+L+ N A+VN D G TPLH AA G +V++LL D
Sbjct: 81 YTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHG--AD 138
Query: 129 VNITDAYGNTPL 140
VN D +G T
Sbjct: 139 VNAQDKFGKTAF 150
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 83/137 (60%), Gaps = 2/137 (1%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L+ AA AG+ + VR+L++NGADVNA + G + L A G EI E+L+ + A+V+ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD 77
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
V G TPLH AA G +V++LL DVN D+ G TPLH A + L ++L++
Sbjct: 78 VFGYTPLHLAAYWGHLEIVEVLLKNG--ADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKH 135
Query: 159 GARLDIQNKEKKTPLDL 175
GA ++ Q+K KT D+
Sbjct: 136 GADVNAQDKFGKTAFDI 152
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 70/121 (57%), Gaps = 2/121 (1%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H AA SG ++V+ LLK+ + VD D TPL LAA G LEIV +L+ NGADVNA
Sbjct: 51 LHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMD 110
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
G + L A G+ EI E+L+ + A+VN QD G T + G + ++L Q+L
Sbjct: 111 SDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL--QKL 168
Query: 126 D 126
+
Sbjct: 169 N 169
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 78/132 (59%), Gaps = 2/132 (1%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
AA +GR+D V L+ N + V+ D TPL LAA G LEIV +L+ NGADVNA G
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
+ L A G EI E+L+ N A+VN +D G TPLH AA++G +V++LL + D
Sbjct: 81 STPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLL--KYGAD 138
Query: 129 VNITDAYGNTPL 140
VN D +G T
Sbjct: 139 VNAQDKFGKTAF 150
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 80/137 (58%), Gaps = 2/137 (1%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L+ AA AG+ + VR+L++NGADVNA G + L A G EI E+L+ N A+VN D
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD 77
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
G+TPLH AA G +V++LL DVN D G TPLH A L ++L++
Sbjct: 78 TLGSTPLHLAAHFGHLEIVEVLLKN--GADVNAKDDNGITPLHLAANRGHLEIVEVLLKY 135
Query: 159 GARLDIQNKEKKTPLDL 175
GA ++ Q+K KT D+
Sbjct: 136 GADVNAQDKFGKTAFDI 152
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 72/121 (59%), Gaps = 2/121 (1%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H AA G ++V+ LLKN + V+ D TPL LAA G LEIV +L+ NGADVNAK
Sbjct: 51 LHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKD 110
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
D G + L A ++G EI E+L+ A+VN QD G T + + G + ++L Q+L
Sbjct: 111 DNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL--QKL 168
Query: 126 D 126
+
Sbjct: 169 N 169
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 81/137 (59%), Gaps = 2/137 (1%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L+ AA AG+ + VR+L++NGADVNA GH+ L A G EI E+L+ A+VN D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD 77
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
GATPLH AA G +V++LL DVN D G TPLH A + L ++L++
Sbjct: 78 NYGATPLHLAADNGHLEIVEVLLKHG--ADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKY 135
Query: 159 GARLDIQNKEKKTPLDL 175
GA ++ Q+K KT D+
Sbjct: 136 GADVNAQDKFGKTAFDI 152
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
AA +G++D V L+ N + V+ D TPL LAA G LEIV +L+ GADVNA + G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
+ L A G EI E+L+ + A+VN +D G TPLH AA G +V++LL + D
Sbjct: 81 ATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLL--KYGAD 138
Query: 129 VNITDAYGNTPL 140
VN D +G T
Sbjct: 139 VNAQDKFGKTAF 150
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 69/121 (57%), Gaps = 2/121 (1%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H AA +G ++V+ LLK + V+ D+ TPL LAA G LEIV +L+ +GADVNAK
Sbjct: 51 LHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKD 110
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
G + L A G EI E+L+ A+VN QD G T + G + ++L Q+L
Sbjct: 111 YEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL--QKL 168
Query: 126 D 126
+
Sbjct: 169 N 169
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 93.2 bits (230), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 84/137 (61%), Gaps = 2/137 (1%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L+ AA AG+ + VR+L++NGADVNA G + L A + G EI E+L+ + A+VN D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
+ G+TPLH AA G +V++LL DVN D +G+TPLH A L ++L++
Sbjct: 78 IMGSTPLHLAALIGHLEIVEVLLKHG--ADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135
Query: 159 GARLDIQNKEKKTPLDL 175
GA ++ Q+K KT D+
Sbjct: 136 GADVNAQDKFGKTAFDI 152
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 75/132 (56%), Gaps = 2/132 (1%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
AA +G++D V L+ N + V+ D + TPL LAA G LEIV +L+ +GADVNA G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
+ L A G EI E+L+ + A+VN D G TPLH AA G +V++LL D
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG--AD 138
Query: 129 VNITDAYGNTPL 140
VN D +G T
Sbjct: 139 VNAQDKFGKTAF 150
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 68/121 (56%), Gaps = 2/121 (1%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H AA G ++V+ LLK+ + V+ D TPL LAA G LEIV +L+ +GADVNA
Sbjct: 51 LHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVD 110
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
G + L A G EI E+L+ + A+VN QD G T + G + ++L Q+L
Sbjct: 111 TWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL--QKL 168
Query: 126 D 126
+
Sbjct: 169 N 169
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 107 RAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQN 166
AA G V++L+ DVN TDA G TPLH A L ++L++ GA ++ +
Sbjct: 20 EAARAGQDDEVRILMANG--ADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 167 KEKKTPLDLLPL 178
TPL L L
Sbjct: 78 IMGSTPLHLAAL 89
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 93.2 bits (230), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 84/137 (61%), Gaps = 2/137 (1%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L+ AA AG+ + VR+L++NGADVNA G + L A + G EI E+L+ + A+VN D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
+ G+TPLH AA G +V++LL DVN D +G+TPLH A L ++L++
Sbjct: 78 IXGSTPLHLAALIGHLEIVEVLLKHG--ADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135
Query: 159 GARLDIQNKEKKTPLDL 175
GA ++ Q+K KT D+
Sbjct: 136 GADVNAQDKFGKTAFDI 152
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 75/132 (56%), Gaps = 2/132 (1%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
AA +G++D V L+ N + V+ D + TPL LAA G LEIV +L+ +GADVNA G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
+ L A G EI E+L+ + A+VN D G TPLH AA G +V++LL D
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG--AD 138
Query: 129 VNITDAYGNTPL 140
VN D +G T
Sbjct: 139 VNAQDKFGKTAF 150
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 68/121 (56%), Gaps = 2/121 (1%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H AA G ++V+ LLK+ + V+ D TPL LAA G LEIV +L+ +GADVNA
Sbjct: 51 LHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVD 110
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
G + L A G EI E+L+ + A+VN QD G T + G + ++L Q+L
Sbjct: 111 TWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL--QKL 168
Query: 126 D 126
+
Sbjct: 169 N 169
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 107 RAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQN 166
AA G V++L+ DVN TDA G TPLH A L ++L++ GA ++ +
Sbjct: 20 EAARAGQDDEVRILMANG--ADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 167 KEKKTPLDLLPL 178
TPL L L
Sbjct: 78 IXGSTPLHLAAL 89
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
AA +G++D V L+ N + + D RTPL +AAA G LEIV +L+ NGADVNA G
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
+ L A S G EI E+L+ A+VN +D G TPL+ AA G +V++LL D
Sbjct: 69 TTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKH--GAD 126
Query: 129 VNITDAYGNTPL 140
VN D +G T
Sbjct: 127 VNAQDKFGKTAF 138
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 82/137 (59%), Gaps = 2/137 (1%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L+ AA AG+ + VR+L++NGAD NA G + L A + G EI E+L+ N A+VN D
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
G TPLH AAS G +V++LL + DVN DA G TPL+ A L ++L++
Sbjct: 66 TNGTTPLHLAASLGHLEIVEVLL--KYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKH 123
Query: 159 GARLDIQNKEKKTPLDL 175
GA ++ Q+K KT D+
Sbjct: 124 GADVNAQDKFGKTAFDI 140
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 60/103 (58%)
Query: 3 RLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVN 62
R +H AA G ++V+ LL+N + V+ D TPL LAA+ G LEIV +L+ GADVN
Sbjct: 36 RTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVN 95
Query: 63 AKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPL 105
AK G + L A G EI E+L+ + A+VN QD G T
Sbjct: 96 AKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAF 138
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
AA +G++D V L+ N + V+ D TPL LAA G LEIV +L+ NGADVNA G
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
+ L A +G E+ E+L+ N A+VN D G TPLH AA+ G +V++LL D
Sbjct: 81 VTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHG--AD 138
Query: 129 VNITDAYGNTPL 140
VN D +G T
Sbjct: 139 VNAQDKFGKTAF 150
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 80/137 (58%), Gaps = 2/137 (1%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L+ AA AG+ + VR+L++NGADVNA G + L A G EI E+L+ N A+VN D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD 77
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
G TPLH AA +G VV++LL DVN D G TPLH A L ++L++
Sbjct: 78 SLGVTPLHLAADRGHLEVVEVLLKNG--ADVNANDHNGFTPLHLAANIGHLEIVEVLLKH 135
Query: 159 GARLDIQNKEKKTPLDL 175
GA ++ Q+K KT D+
Sbjct: 136 GADVNAQDKFGKTAFDI 152
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 69/121 (57%), Gaps = 2/121 (1%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H AA G ++V+ LLKN + V+ D TPL LAA G LE+V +L+ NGADVNA
Sbjct: 51 LHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNAND 110
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
G + L A + G EI E+L+ + A+VN QD G T + G + ++L Q+L
Sbjct: 111 HNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL--QKL 168
Query: 126 D 126
+
Sbjct: 169 N 169
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 82/137 (59%), Gaps = 2/137 (1%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L+ AA AG+ + VR+L++NGADVNA G + L + G EI E+L+ A+VN D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD 77
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
G TPLH AA +G +V++LL + DVN D G TPLH A E+ L ++L++
Sbjct: 78 KSGWTPLHLAAYRGHLEIVEVLL--KYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKY 135
Query: 159 GARLDIQNKEKKTPLDL 175
GA ++ Q+K KT D+
Sbjct: 136 GADVNAQDKFGKTAFDI 152
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 72/132 (54%), Gaps = 2/132 (1%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
AA +G++D V L+ N + V+ D TPL L G LEI+ +L+ ADVNA G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
+ L A +G EI E+L+ A+VN D +G TPLH AA G +V++LL + D
Sbjct: 81 WTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLL--KYGAD 138
Query: 129 VNITDAYGNTPL 140
VN D +G T
Sbjct: 139 VNAQDKFGKTAF 150
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H +G ++++ LLK + V+ D + TPL LAA G LEIV +L+ GADVNA
Sbjct: 51 LHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMD 110
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
G++ L A G EI E+L+ A+VN QD G T + G + ++L Q+L
Sbjct: 111 YQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL--QKL 168
Query: 126 D 126
+
Sbjct: 169 N 169
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 94/172 (54%), Gaps = 5/172 (2%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNG-ADVNAKADG 67
AA + + V +L+K + VDPKD T L LAA G E+V+ L+SNG DVN + DG
Sbjct: 51 AAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDG 110
Query: 68 GHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDI 127
G + + +A ++ +LL+ +++NI+D LH AA G + ++LL + D+
Sbjct: 111 GWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL 170
Query: 128 D-VNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPL 178
VNI +G++PLH A E R L + + + ++NKE +TPL L
Sbjct: 171 HAVNI---HGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASL 219
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 79/139 (56%), Gaps = 3/139 (2%)
Query: 6 IHWAALSGREDVVDFLLKN-KSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK 64
+H AA G +VV +LL N + V+ +DD TP+I A +++V+LL+S G+D+N +
Sbjct: 81 LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIR 140
Query: 65 ADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQR 124
+ + L +A G +IAE+L+ +++ ++ G +PLH AA + V L L++
Sbjct: 141 DNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR- 199
Query: 125 LDIDVNITDAYGNTPLHYA 143
D DV + + G TPL A
Sbjct: 200 -DSDVTLKNKEGETPLQCA 217
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%)
Query: 2 ERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADV 61
E + +HWAA SG D+ + LL K + + +PL +AA + + V L +S +DV
Sbjct: 144 ENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV 203
Query: 62 NAKADGGHSALQYA 75
K G + LQ A
Sbjct: 204 TLKNKEGETPLQCA 217
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 91 HANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLT 150
H N ++ +PLH AA G + +L+ +ID D TPL A E L
Sbjct: 1 HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQ--RTPLMEAAENNHLE 58
Query: 151 DAKLLVRCGARLDIQNKEKKTPLDL 175
K L++ GA +D ++ E T L L
Sbjct: 59 AVKYLIKAGALVDPKDAEGSTCLHL 83
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 89/175 (50%), Gaps = 7/175 (4%)
Query: 5 LIHWAALSGREDVVDFLLKNKSPVDP-KDDTNRTPLILAAAAGKLEIVRLLISNGADVNA 63
L+HWAA++ R D+V + + + VD D N TPL A G L +V L+ GAD +
Sbjct: 45 LLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSL 104
Query: 64 KADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAA--SQGITPVVKLLL 121
G S + A G I LI +V++ D G TPL AA + + P +LLL
Sbjct: 105 IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDP-TRLLL 163
Query: 122 TQRLDIDVNITDAY-GNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
T ++ VN+ D Y NT LH+A T LL+ GA +D QN + ++ LDL
Sbjct: 164 T--FNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDL 216
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILA 42
+HWA L+G V+ LL+ + VD ++ + L LA
Sbjct: 181 LHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLA 217
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 83/168 (49%), Gaps = 7/168 (4%)
Query: 3 RLLIHWAALSGREDVVDFLLKNKSPV---DPKDDTNRTPLILAAAAGKLEIVRLLISN-- 57
R+ +HW+ ++ FLL V D DD+ TP +A + G LE+V+ L
Sbjct: 37 RIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPL 96
Query: 58 GADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVV 117
D+N + G + L A K W E+++ LI N A+V I+D PLHRAAS G ++
Sbjct: 97 KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 156
Query: 118 KLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLV-RCGARLDI 164
+LL VN D G TPL +A E A LLV + GA D+
Sbjct: 157 ELLCGLGKSA-VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL 203
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 59/129 (45%), Gaps = 3/129 (2%)
Query: 48 LEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDV---RGATP 104
++ LL S + + K G L ++ S EI L+ NVN+ D G TP
Sbjct: 16 FKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTP 75
Query: 105 LHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDI 164
H A S G VVK L + L D+N G T LH A +K ++ L+ GA + I
Sbjct: 76 FHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI 135
Query: 165 QNKEKKTPL 173
++K + PL
Sbjct: 136 KDKFNQIPL 144
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 83/168 (49%), Gaps = 7/168 (4%)
Query: 3 RLLIHWAALSGREDVVDFLLKNKSPV---DPKDDTNRTPLILAAAAGKLEIVRLLISN-- 57
R+ +HW+ ++ FLL V D DD+ TP +A + G LE+V+ L
Sbjct: 37 RIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPL 96
Query: 58 GADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVV 117
D+N + G + L A K W E+++ LI N A+V I+D PLHRAAS G ++
Sbjct: 97 KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 156
Query: 118 KLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLV-RCGARLDI 164
+LL VN D G TPL +A E A LLV + GA D+
Sbjct: 157 ELLCGLGKSA-VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL 203
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 59/129 (45%), Gaps = 3/129 (2%)
Query: 48 LEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDV---RGATP 104
++ LL S + + K G L ++ S EI L+ NVN+ D G TP
Sbjct: 16 FKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTP 75
Query: 105 LHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDI 164
H A S G VVK L + L D+N G T LH A +K ++ L+ GA + I
Sbjct: 76 FHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI 135
Query: 165 QNKEKKTPL 173
++K + PL
Sbjct: 136 KDKFNQIPL 144
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 83/168 (49%), Gaps = 7/168 (4%)
Query: 3 RLLIHWAALSGREDVVDFLLKNKSPV---DPKDDTNRTPLILAAAAGKLEIVRLLISN-- 57
R+ +HW+ ++ FLL V D DD+ TP +A + G LE+V+ L
Sbjct: 37 RIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPL 96
Query: 58 GADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVV 117
D+N + G + L A K W E+++ LI N A+V I+D PLHRAAS G ++
Sbjct: 97 KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 156
Query: 118 KLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLV-RCGARLDI 164
+LL VN D G TPL +A E A LLV + GA D+
Sbjct: 157 ELLCGLGKSA-VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL 203
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 59/129 (45%), Gaps = 3/129 (2%)
Query: 48 LEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDV---RGATP 104
++ LL S + + K G L ++ S EI L+ NVN+ D G TP
Sbjct: 16 FKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTP 75
Query: 105 LHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDI 164
H A S G VVK L + L D+N G T LH A +K ++ L+ GA + I
Sbjct: 76 FHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI 135
Query: 165 QNKEKKTPL 173
++K + PL
Sbjct: 136 KDKFNQIPL 144
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 81/170 (47%), Gaps = 2/170 (1%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H AA +G +V +LL+NK+ V+ K ++TPL AA G +V+LL+ N A+ N
Sbjct: 51 LHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT 110
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
GH+ L A +G E L+ A+ +G TPLH AA G V +LLL +
Sbjct: 111 TAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER-- 168
Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
D N G TPLH A L KLL+ G TPL +
Sbjct: 169 DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHI 218
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 88/170 (51%), Gaps = 2/170 (1%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H AA G+ V + LL+ + + TPL +A L+IV+LL+ G ++ A
Sbjct: 150 LHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPA 209
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
G++ L A + E+A L+ + N + V+G TPLH AA +G +V LLL+++
Sbjct: 210 WNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ- 268
Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
+ N+ + G TPLH +E + A +L++ G +D + TPL +
Sbjct: 269 -ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHV 317
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 83/170 (48%), Gaps = 2/170 (1%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H A+ G +V LL+ + + + TPL +AA AG E+ + L+ N A VNAKA
Sbjct: 18 LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA 77
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
+ L A G + +LL+ N+AN N+ G TPLH AA +G V LL +
Sbjct: 78 KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK-- 135
Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
+ G TPLH A + ++ A+LL+ A + K TPL +
Sbjct: 136 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHV 185
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 2/170 (1%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H AA + +V LL+ + + TPL LAA G E+V LL+S A+ N
Sbjct: 216 LHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN 275
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
G + L +G +A++LI + V+ G TPLH A+ G +VK LL +
Sbjct: 276 KSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ- 334
Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
DVN G +PLH A ++ LL++ GA + + + TPL +
Sbjct: 335 -ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAI 383
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 75/144 (52%), Gaps = 5/144 (3%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H AA G ++V LL ++ + + + TPL L A G + + +LI +G V+A
Sbjct: 249 LHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATT 308
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
G++ L A G ++ + L+ + A+VN + G +PLH+AA QG T +V LLL +
Sbjct: 309 RMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLL--KN 366
Query: 126 DIDVNITDAYGNTPLHYACEEKRL 149
N + G TPL A KRL
Sbjct: 367 GASPNEVSSDGTTPLAIA---KRL 387
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 67/139 (48%), Gaps = 2/139 (1%)
Query: 37 TPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNI 96
TPL +A+ G L IV+ L+ GA N + L A G E+A+ L+ N A VN
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 97 QDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLV 156
+ TPLH AA G T +VKLLL + + N+ G+TPLH A E + L+
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLLEN--NANPNLATTAGHTPLHIAAREGHVETVLALL 133
Query: 157 RCGARLDIQNKEKKTPLDL 175
A K+ TPL +
Sbjct: 134 EKEASQACMTKKGFTPLHV 152
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 58/115 (50%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H A G V D L+K+ VD TPL +A+ G +++V+ L+ + ADVNAK
Sbjct: 282 LHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKT 341
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
G+S L A +G +I LL+ N A+ N G TPL A G V +L
Sbjct: 342 KLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 396
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 71/135 (52%), Gaps = 3/135 (2%)
Query: 46 GKLEIVRLLISNGA-DVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATP 104
G VRL + N D+N D G S L +AC +G + E+LI A +N+ + TP
Sbjct: 11 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP 70
Query: 105 LHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDI 164
LH AAS G +V+ LL + DI N + +GN PLHYAC + A+ LV GA + I
Sbjct: 71 LHLAASHGHRDIVQKLLQYKADI--NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 128
Query: 165 QNKEKKTPLDLLPLP 179
NK + P+D P
Sbjct: 129 CNKYGEMPVDKAKAP 143
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 61/105 (58%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+HWA GR VV+ L+ + ++ + + TPL LAA+ G +IV+ L+ AD+NA
Sbjct: 38 LHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVN 97
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAAS 110
+ G+ L YAC G ++AE L+ N A V+I + G P+ +A +
Sbjct: 98 EHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKA 142
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 71/135 (52%), Gaps = 3/135 (2%)
Query: 46 GKLEIVRLLISNGA-DVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATP 104
G VRL + N D+N D G S L +AC +G + E+LI A +N+ + TP
Sbjct: 16 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP 75
Query: 105 LHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDI 164
LH AAS G +V+ LL + DI N + +GN PLHYAC + A+ LV GA + I
Sbjct: 76 LHLAASHGHRDIVQKLLQYKADI--NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 133
Query: 165 QNKEKKTPLDLLPLP 179
NK + P+D P
Sbjct: 134 CNKYGEMPVDKAKAP 148
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 61/105 (58%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+HWA GR VV+ L+ + ++ + + TPL LAA+ G +IV+ L+ AD+NA
Sbjct: 43 LHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVN 102
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAAS 110
+ G+ L YAC G ++AE L+ N A V+I + G P+ +A +
Sbjct: 103 EHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKA 147
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 75/134 (55%), Gaps = 5/134 (3%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNR--TPLILAAAAGKLEIVRLLISNGADVNAKAD 66
AA +G + V L +S V+ +D R TPL AA ++ +V L+ +GADV+AK
Sbjct: 15 AAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 73
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
GG L ACS G E+AELL+ + A VN+ D+ TPLH AA++G + KLLL D
Sbjct: 74 GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 133
Query: 127 IDVNITDAYGNTPL 140
D GNTPL
Sbjct: 134 PTKKNRD--GNTPL 145
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 72/142 (50%), Gaps = 9/142 (6%)
Query: 39 LILAAAAGKLEIVRLLIS----NGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANV 94
L+ AA AG +E V+ L + N D+ + + L +A + E L+ + A+V
Sbjct: 12 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQS---TPLHFAAGYNRVSVVEYLLQHGADV 68
Query: 95 NIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKL 154
+ +D G PLH A S G V +LL+ VN+ D + TPLH A + + KL
Sbjct: 69 HAKDKGGLVPLHNACSYGHYEVAELLVKH--GAVVNVADLWKFTPLHEAAAKGKYEICKL 126
Query: 155 LVRCGARLDIQNKEKKTPLDLL 176
L++ GA +N++ TPLDL+
Sbjct: 127 LLQHGADPTKKNRDGNTPLDLV 148
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 54/100 (54%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H+AA R VV++LL++ + V KD PL A + G E+ LL+ +GA VN
Sbjct: 46 LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD 105
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPL 105
+ L A +KG EI +LL+ + A+ ++ G TPL
Sbjct: 106 LWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 145
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 75/134 (55%), Gaps = 5/134 (3%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNR--TPLILAAAAGKLEIVRLLISNGADVNAKAD 66
AA +G + V L +S V+ +D R TPL AA ++ +V L+ +GADV+AK
Sbjct: 17 AAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 75
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
GG L ACS G E+AELL+ + A VN+ D+ TPLH AA++G + KLLL D
Sbjct: 76 GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 135
Query: 127 IDVNITDAYGNTPL 140
D GNTPL
Sbjct: 136 PTKKNRD--GNTPL 147
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 72/142 (50%), Gaps = 9/142 (6%)
Query: 39 LILAAAAGKLEIVRLLIS----NGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANV 94
L+ AA AG +E V+ L + N D+ + + L +A + E L+ + A+V
Sbjct: 14 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQS---TPLHFAAGYNRVSVVEYLLQHGADV 70
Query: 95 NIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKL 154
+ +D G PLH A S G V +LL+ VN+ D + TPLH A + + KL
Sbjct: 71 HAKDKGGLVPLHNACSYGHYEVAELLVKH--GAVVNVADLWKFTPLHEAAAKGKYEICKL 128
Query: 155 LVRCGARLDIQNKEKKTPLDLL 176
L++ GA +N++ TPLDL+
Sbjct: 129 LLQHGADPTKKNRDGNTPLDLV 150
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 54/100 (54%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H+AA R VV++LL++ + V KD PL A + G E+ LL+ +GA VN
Sbjct: 48 LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD 107
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPL 105
+ L A +KG EI +LL+ + A+ ++ G TPL
Sbjct: 108 LWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 147
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 75/134 (55%), Gaps = 5/134 (3%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNR--TPLILAAAAGKLEIVRLLISNGADVNAKAD 66
AA +G + V L +S V+ +D R TPL AA ++ +V L+ +GADV+AK
Sbjct: 19 AAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 77
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
GG L ACS G E+AELL+ + A VN+ D+ TPLH AA++G + KLLL D
Sbjct: 78 GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 137
Query: 127 IDVNITDAYGNTPL 140
D GNTPL
Sbjct: 138 PTKKNRD--GNTPL 149
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 72/142 (50%), Gaps = 9/142 (6%)
Query: 39 LILAAAAGKLEIVRLLIS----NGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANV 94
L+ AA AG +E V+ L + N D+ + + L +A + E L+ + A+V
Sbjct: 16 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQS---TPLHFAAGYNRVSVVEYLLQHGADV 72
Query: 95 NIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKL 154
+ +D G PLH A S G V +LL+ VN+ D + TPLH A + + KL
Sbjct: 73 HAKDKGGLVPLHNACSYGHYEVAELLVKH--GAVVNVADLWKFTPLHEAAAKGKYEICKL 130
Query: 155 LVRCGARLDIQNKEKKTPLDLL 176
L++ GA +N++ TPLDL+
Sbjct: 131 LLQHGADPTKKNRDGNTPLDLV 152
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 54/100 (54%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H+AA R VV++LL++ + V KD PL A + G E+ LL+ +GA VN
Sbjct: 50 LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD 109
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPL 105
+ L A +KG EI +LL+ + A+ ++ G TPL
Sbjct: 110 LWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 149
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 69/122 (56%), Gaps = 7/122 (5%)
Query: 9 AALSGREDVVDFLLKNKSPVD----PKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK 64
AA SG E+ + LL +P++ D TPL LAA ++ IV+LL+ +GADV+AK
Sbjct: 31 AARSGNEEKLMALL---TPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK 87
Query: 65 ADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQR 124
GG L ACS G E+ ELL+ + A VN D+ TPLH AAS+ V LLL+
Sbjct: 88 DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHG 147
Query: 125 LD 126
D
Sbjct: 148 AD 149
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 5/156 (3%)
Query: 33 DTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKE--IAELLIHN 90
+ + L+ AA +G E + L++ +VN A G + + G+ I +LL+ +
Sbjct: 22 EYKKDELLEAARSGNEEKLMALLTP-LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH 80
Query: 91 HANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLT 150
A+V+ +D G PLH A S G V +LLL VN D + TPLH A + R+
Sbjct: 81 GADVHAKDKGGLVPLHNACSYGHYEVTELLLKH--GACVNAMDLWQFTPLHEAASKNRVE 138
Query: 151 DAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALT 186
LL+ GA + N K+ +D+ P P L + LT
Sbjct: 139 VCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLT 174
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 86/212 (40%), Gaps = 59/212 (27%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD---VN 62
+H A G +V + LLK+ + V+ D TPL AA+ ++E+ LL+S+GAD VN
Sbjct: 95 LHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVN 154
Query: 63 AKADG-------------------GHSALQYA---------------------------- 75
GHS LQ A
Sbjct: 155 CHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETA 214
Query: 76 --CSKGW-----KEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
C+ K++AELL+ ANVN ++ TPLH AA + V+++L +
Sbjct: 215 LHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVL--HKHGAK 272
Query: 129 VNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
+N D+ G T LH A L +LL+ G+
Sbjct: 273 MNALDSLGQTALHRAALAGHLQTCRLLLSYGS 304
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 24/191 (12%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H AA R +V LL++ + V KD PL A + G E+ LL+ +GA VNA
Sbjct: 62 LHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMD 121
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGI------------ 113
+ L A SK E+ LL+ + A+ + + G + + A + +
Sbjct: 122 LWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHS 181
Query: 114 -------TPVVKLLLTQRLDIDVNITDAYGN-TPLHYACEE---KRLTDAKLLVRCGARL 162
+ K+ T L+I +N + T LH A KR A+LL+R GA +
Sbjct: 182 LLQAAREADLAKVKKTLALEI-INFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV 240
Query: 163 DIQNKEKKTPL 173
+ +NK+ TPL
Sbjct: 241 NEKNKDFMTPL 251
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%)
Query: 49 EIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRA 108
++ LL+ GA+VN K + L A + ++ E+L + A +N D G T LHRA
Sbjct: 228 QVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRA 287
Query: 109 ASQGITPVVKLLLTQRLD 126
A G +LLL+ D
Sbjct: 288 ALAGHLQTCRLLLSYGSD 305
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 4/107 (3%)
Query: 14 REDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQ 73
R+ V + LL+ + V+ K+ TPL +AA +++ +L +GA +NA G +AL
Sbjct: 226 RKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALH 285
Query: 74 YACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
A G + LL+ ++ +I ++G T AA G V ++L
Sbjct: 286 RAALAGHLQTCRLLLSYGSDPSIISLQGFT----AAQMGNEAVQQIL 328
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H AA DV++ L K+ + ++ D +T L AA AG L+ RLL+S G+D + +
Sbjct: 251 LHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIIS 310
Query: 66 DGGHSALQ 73
G +A Q
Sbjct: 311 LQGFTAAQ 318
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 54/86 (62%)
Query: 36 RTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVN 95
RTPL LAA G LE+V+LL+ GADVNAK G + L A G E+ +LL+ A+VN
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 96 IQDVRGATPLHRAASQGITPVVKLLL 121
+D G TPLH AA G VVKLLL
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 53/88 (60%)
Query: 1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
N R +H AA +G +VV LL+ + V+ KD RTPL LAA G LE+V+LL+ GAD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 61 VNAKADGGHSALQYACSKGWKEIAELLI 88
VNAK G + L A G E+ +LL+
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 68 GHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDI 127
G + L A G E+ +LL+ A+VN +D G TPLH AA G VVKLLL
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA--GA 59
Query: 128 DVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
DVN D G TPLH A L KLL+ GA
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 101 GATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
G TPLH AA G VVKLLL DVN D G TPLH A L KLL+ GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 161 RLDIQNKEKKTPLDL 175
++ ++K +TPL L
Sbjct: 60 DVNAKDKNGRTPLHL 74
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 37/59 (62%)
Query: 1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA 59
N R +H AA +G +VV LL+ + V+ KD RTPL LAA G LE+V+LL+ GA
Sbjct: 34 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 102/203 (50%), Gaps = 18/203 (8%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H A RED+V+ LL++ + + TP ILAA AG +++++L +S GADVN
Sbjct: 63 LHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECD 122
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNI--------QDVR--GATPLHRAASQGITP 115
G +A A G + + L ANVN+ + +R GAT L AA +G
Sbjct: 123 FYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE 182
Query: 116 VVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAK----LLVRCGARLDIQNKEKKT 171
V+K+LL + + DVN D G L +A +D + LL+ GA ++++ + KT
Sbjct: 183 VLKILLDE-MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT 241
Query: 172 PLDL-LPLPHLA--QALTEIEPI 191
PL L + HL Q L E E I
Sbjct: 242 PLILAVEKKHLGLVQRLLEQEHI 264
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 89/170 (52%), Gaps = 16/170 (9%)
Query: 9 AALSGREDVVDFLLKNKSPVD----PKDDTNR------TPLILAAAAGKLEIVRLLISN- 57
AA+ G+ + FL K + V+ K+D R T L+ AA G +E++++L+
Sbjct: 132 AAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM 191
Query: 58 GADVNAKADGGHSALQYAC----SKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGI 113
GADVNA + G +AL +A + I LL+ + A+VN++ RG TPL A +
Sbjct: 192 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 251
Query: 114 TPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLD 163
+V+ LL Q I++N TD+ G T L A E K A+LL + GA D
Sbjct: 252 LGLVQRLLEQE-HIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 300
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 15 EDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIV-RLLISNGADVNAKADGGHSALQ 73
E + LL + + V+ + + +TPLILA L +V RLL ++N G +AL
Sbjct: 219 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALL 278
Query: 74 YACSKGWKEIAELLIHNHANVNIQDV 99
A K+IAELL A+ + D+
Sbjct: 279 LAVELKLKKIAELLCKRGASTDCGDL 304
Score = 26.6 bits (57), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 128 DVNITDAYGN-TPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
+VN + G TPLH A + R +LL+R GA ++ K TP
Sbjct: 50 NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF 96
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 102/203 (50%), Gaps = 18/203 (8%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H A RED+V+ LL++ + + TP +LAA AG +++++L +S GADVN
Sbjct: 43 LHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECD 102
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNI--------QDVR--GATPLHRAASQGITP 115
G +A A G + + L ANVN+ + +R GAT L AA +G
Sbjct: 103 FYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE 162
Query: 116 VVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAK----LLVRCGARLDIQNKEKKT 171
V+K+LL + + DVN D G L +A +D + LL+ GA ++++ + KT
Sbjct: 163 VLKILLDE-MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT 221
Query: 172 PLDL-LPLPHLA--QALTEIEPI 191
PL L + HL Q L E E I
Sbjct: 222 PLILAVEKKHLGLVQRLLEQEHI 244
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 89/170 (52%), Gaps = 16/170 (9%)
Query: 9 AALSGREDVVDFLLKNKSPVD----PKDDTNR------TPLILAAAAGKLEIVRLLISN- 57
AA+ G+ + FL K + V+ K+D R T L+ AA G +E++++L+
Sbjct: 112 AAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM 171
Query: 58 GADVNAKADGGHSALQYAC----SKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGI 113
GADVNA + G +AL +A + I LL+ + A+VN++ RG TPL A +
Sbjct: 172 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 231
Query: 114 TPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLD 163
+V+ LL Q I++N TD+ G T L A E K A+LL + GA D
Sbjct: 232 LGLVQRLLEQE-HIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 280
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 15 EDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIV-RLLISNGADVNAKADGGHSALQ 73
E + LL + + V+ + + +TPLILA L +V RLL ++N G +AL
Sbjct: 199 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALL 258
Query: 74 YACSKGWKEIAELLIHNHANVNIQDV 99
A K+IAELL A+ + D+
Sbjct: 259 LAVELKLKKIAELLCKRGASTDCGDL 284
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
AA +G++D V L+ N + V+ KD+ TPL LA A G LEIV +L+ NGADVNA G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
+ L A G EIAE+L+ + A+VN QD G T + G + ++L Q+L+
Sbjct: 81 FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL--QKLN 136
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 61/102 (59%), Gaps = 2/102 (1%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L+ AA AG+ + VR+L++NGADVNAK + G + L A + G EI E+L+ N A+VN D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPL 140
G TPLH AA G + ++LL DVN D +G T
Sbjct: 78 AIGFTPLHLAAFIGHLEIAEVLLKH--GADVNAQDKFGKTAF 117
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Query: 75 ACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDA 134
A G + +L+ N A+VN +D G TPL+ A + G +V++LL DVN DA
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN--GADVNAVDA 78
Query: 135 YGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
G TPLH A L A++L++ GA ++ Q+K KT D+
Sbjct: 79 IGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDI 119
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 49/82 (59%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
++ A G ++V+ LLKN + V+ D TPL LAA G LEI +L+ +GADVNA+
Sbjct: 51 LYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQD 110
Query: 66 DGGHSALQYACSKGWKEIAELL 87
G +A + G +++AE+L
Sbjct: 111 KFGKTAFDISIGNGNEDLAEIL 132
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L+ A AG+ + VR+L++NGADVNA D G + L A +G EI E+L+ + A+VN +D
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACE 145
+ G TPLH AA+ G +V++LL DVN D +G T + +
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLL--EYGADVNAQDKFGKTAFDISID 122
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 63/112 (56%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
A +G++D V L+ N + V+ DD TPL LAA G LEIV +L+ +GADVNA+ G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWG 80
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
+ L A + G EI E+L+ A+VN QD G T + G + ++L
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 52/82 (63%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H AA G ++V+ LLK+ + V+ +D RTPL LAA G LEIV +L+ GADVNA+
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Query: 66 DGGHSALQYACSKGWKEIAELL 87
G +A + G +++AE+L
Sbjct: 111 KFGKTAFDISIDNGNEDLAEIL 132
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 75 ACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDA 134
A G + +L+ N A+VN D G TPLH AA +G +V++LL DVN D
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH--GADVNARDI 78
Query: 135 YGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
+G TPLH A L ++L+ GA ++ Q+K KT D+
Sbjct: 79 WGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDI 119
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L+ A AG+ + VR+L++NGADVNA D G + L A +G EI E+L+ + A+VN D
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACE 145
+ G TPLH AA+ G +V++LL DVN D +G T + +
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLL--EYGADVNAQDKFGKTAFDISID 122
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 62/112 (55%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
A +G++D V L+ N + V+ DD TPL LAA G LEIV +L+ +GADVNA G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWG 80
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
+ L A + G EI E+L+ A+VN QD G T + G + ++L
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 55/101 (54%), Gaps = 2/101 (1%)
Query: 75 ACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDA 134
A G + +L+ N A+VN D G TPLH AA +G +V++LL DVN +D
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH--GADVNASDI 78
Query: 135 YGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
+G TPLH A L ++L+ GA ++ Q+K KT D+
Sbjct: 79 WGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDI 119
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 51/82 (62%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H AA G ++V+ LLK+ + V+ D RTPL LAA G LEIV +L+ GADVNA+
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Query: 66 DGGHSALQYACSKGWKEIAELL 87
G +A + G +++AE+L
Sbjct: 111 KFGKTAFDISIDNGNEDLAEIL 132
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 67/124 (54%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H AAL GR D++ LLK+ + ++ PL LA G ++V+ L+ + A N K
Sbjct: 90 LHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKD 149
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
G++ L YACS G E+ LL+ + A++N + +G T LH A + VV+LLL
Sbjct: 150 LSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGA 209
Query: 126 DIDV 129
+ V
Sbjct: 210 SVQV 213
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 77/138 (55%), Gaps = 2/138 (1%)
Query: 37 TPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNI 96
+PL +AA G+ +++ LL+ +GA+ A+ L AC +G ++ + L+ ++A N
Sbjct: 88 SPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNK 147
Query: 97 QDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLV 156
+D+ G TPL A S G +V LLL I N ++ GNT LH A EK + +LL+
Sbjct: 148 KDLSGNTPLIYACSGGHHELVALLLQHGASI--NASNNKGNTALHEAVIEKHVFVVELLL 205
Query: 157 RCGARLDIQNKEKKTPLD 174
GA + + NK ++T +D
Sbjct: 206 LHGASVQVLNKRQRTAVD 223
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 56 SNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITP 115
++G VN + G S L A G ++ LL+ + AN ++ A PLH A QG
Sbjct: 74 ASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQ 133
Query: 116 VVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
VVK LL + N D GNTPL YAC LL++ GA ++ N + T L
Sbjct: 134 VVKCLLDS--NAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTAL 189
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H A G VV LL + + + KD + TPLI A + G E+V LL+ +GA +NA
Sbjct: 123 LHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASN 182
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPL 105
+ G++AL A + + ELL+ + A+V + + R T +
Sbjct: 183 NKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAV 222
Score = 30.0 bits (66), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
+ VN+T G++PLH A R LL++ GA +N ++ PL L
Sbjct: 77 LGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHL 125
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L+ A AG+ + VR+L++NGADVNA D G + L A +G EI E+L+ + A+VN D
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACE 145
G TPLH AA+ G +V++LL DVN D +G T + +
Sbjct: 78 SWGRTPLHLAATVGHLEIVEVLL--EYGADVNAQDKFGKTAFDISID 122
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 62/112 (55%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
A +G++D V L+ N + V+ DD TPL LAA G LEIV +L+ +GADVNA G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWG 80
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
+ L A + G EI E+L+ A+VN QD G T + G + ++L
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Query: 75 ACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDA 134
A G + +L+ N A+VN D G TPLH AA +G +V++LL DVN +D+
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH--GADVNASDS 78
Query: 135 YGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
+G TPLH A L ++L+ GA ++ Q+K KT D+
Sbjct: 79 WGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDI 119
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 51/82 (62%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H AA G ++V+ LLK+ + V+ D RTPL LAA G LEIV +L+ GADVNA+
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Query: 66 DGGHSALQYACSKGWKEIAELL 87
G +A + G +++AE+L
Sbjct: 111 KFGKTAFDISIDNGNEDLAEIL 132
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 67/137 (48%)
Query: 4 LLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNA 63
L +H A G + ++ ++ ++ D+ TPL+ AAA G++ +V L+ NGAD
Sbjct: 21 LSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL 80
Query: 64 KADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQ 123
G SAL ACSKG+ +I ++L+ +VN D G TPL A VK+LL
Sbjct: 81 LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 140
Query: 124 RLDIDVNITDAYGNTPL 140
D + Y + L
Sbjct: 141 GADPTIETDSGYNSMDL 157
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 61/126 (48%)
Query: 8 WAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADG 67
WAA G+ VV+FLL+N + + L LA + G +IV++L+ G DVN
Sbjct: 58 WAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWN 117
Query: 68 GHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDI 127
G + L YA + ++L+ + A+ I+ G + A + G V +++ + L +
Sbjct: 118 GGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL 177
Query: 128 DVNITD 133
NI +
Sbjct: 178 LQNIKE 183
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 68/140 (48%)
Query: 4 LLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNA 63
L +H A G + ++ ++ ++ D+ TPL+ AAA G++ +V L+ NGAD
Sbjct: 5 LSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL 64
Query: 64 KADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQ 123
G SAL ACSKG+ +I ++L+ +VN D G TPL A VK+LL
Sbjct: 65 LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 124
Query: 124 RLDIDVNITDAYGNTPLHYA 143
D + Y + L A
Sbjct: 125 GADPTIETDSGYNSMDLAVA 144
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 61/126 (48%)
Query: 8 WAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADG 67
WAA G+ VV+FLL+N + + L LA + G +IV++L+ G DVN
Sbjct: 42 WAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWN 101
Query: 68 GHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDI 127
G + L YA + ++L+ + A+ I+ G + A + G V +++ + L +
Sbjct: 102 GGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL 161
Query: 128 DVNITD 133
NI +
Sbjct: 162 LQNIKE 167
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 68/140 (48%)
Query: 4 LLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNA 63
L +H A G + ++ ++ ++ D+ TPL+ AAA G++ +V L+ NGAD
Sbjct: 3 LSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL 62
Query: 64 KADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQ 123
G SAL ACSKG+ +I ++L+ +VN D G TPL A VK+LL
Sbjct: 63 LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 122
Query: 124 RLDIDVNITDAYGNTPLHYA 143
D + Y + L A
Sbjct: 123 GADPTIETDSGYNSMDLAVA 142
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 58/120 (48%)
Query: 8 WAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADG 67
WAA G+ VV+FLL+N + + L LA + G +IV++L+ G DVN
Sbjct: 40 WAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWN 99
Query: 68 GHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDI 127
G + L YA + ++L+ + A+ I+ G + A + G V +++ + L +
Sbjct: 100 GGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL 159
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 65/112 (58%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
AA +G++D V L+ N + V+ D+ TPL LAA G LEIV +L+ GADVNA+ + G
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
+ L A +G EI E+L+ + A+VN QD G T + G + ++L
Sbjct: 81 ITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L+ AA AG+ + VR+L++NGADVNA + G + L A G EI E+L+ A+VN +D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACE 145
G TPLH AA +G +V++LL DVN D +G T + +
Sbjct: 78 NFGITPLHLAAIRGHLEIVEVLLKHG--ADVNAQDKFGKTAFDISID 122
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 55/101 (54%), Gaps = 2/101 (1%)
Query: 75 ACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDA 134
A G + +L+ N A+VN D G TPLH AA G +V++LL + DVN D
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLL--KYGADVNAEDN 78
Query: 135 YGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
+G TPLH A L ++L++ GA ++ Q+K KT D+
Sbjct: 79 FGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDI 119
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 52/82 (63%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H AA G ++V+ LLK + V+ +D+ TPL LAA G LEIV +L+ +GADVNA+
Sbjct: 51 LHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQD 110
Query: 66 DGGHSALQYACSKGWKEIAELL 87
G +A + G +++AE+L
Sbjct: 111 KFGKTAFDISIDNGNEDLAEIL 132
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 66/119 (55%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
A + G E+ +D L++N ++ KD T LI A +L I L+S G++VN K G
Sbjct: 42 ACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSG 101
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDI 127
+ L ++ G+ E++ L+ + ANVN +++ G TPL A+ G + +VK LL DI
Sbjct: 102 KTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI 160
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 60/130 (46%), Gaps = 2/130 (1%)
Query: 31 KDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHN 90
+D NRTPL++A G + L+ N + K G +AL +A IAE L+
Sbjct: 31 RDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK 90
Query: 91 HANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLT 150
+NVN +D G TPL + G + + LL +VN + G TPL A + R
Sbjct: 91 GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEH--GANVNDRNLEGETPLIVASKYGRSE 148
Query: 151 DAKLLVRCGA 160
K L+ GA
Sbjct: 149 IVKKLLELGA 158
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%)
Query: 8 WAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADG 67
WA + R + + LL S V+ KD + +TPL+ + G E+ L+ +GA+VN +
Sbjct: 74 WAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLE 133
Query: 68 GHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQR 124
G + L A G EI + L+ A+++ +D+ G T A G V+K+ R
Sbjct: 134 GETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR 190
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
Query: 72 LQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNI 131
L AC G + + L+ N + +D+ G+T L A + + LL++ +VN
Sbjct: 39 LMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK--GSNVNT 96
Query: 132 TDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
D G TPL ++ + L+ GA ++ +N E +TPL
Sbjct: 97 KDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPL 138
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 89/197 (45%), Gaps = 29/197 (14%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H A + D+V FL++N + ++ D+ PL AA+ G L+I LIS GA V A
Sbjct: 77 LHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVN 136
Query: 66 DGGHSALQYA-------------------CSKGWKEIAELLIHNHANV----NIQDVR-- 100
G + L A KE +++ + +I DVR
Sbjct: 137 SEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHA 196
Query: 101 --GATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
G T LH AA++G T V+KLL+ R DVNI D G TPLH A + ++LV
Sbjct: 197 KSGGTALHVAAAKGYTEVLKLLIQARY--DVNIKDYDGWTPLHAAAHWGKEEACRILVEN 254
Query: 159 GARLDIQNKEKKTPLDL 175
++ NK +T D+
Sbjct: 255 LCDMEAVNKVGQTAFDV 271
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
+ A ++G E V L+ GAD+N G +AL AC ++ + L+ N AN+N D
Sbjct: 44 FLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD 103
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPL 140
G PLH AAS G + + L++Q V ++ G+TPL
Sbjct: 104 NEGWIPLHAAASCGYLDIAEYLISQ--GAHVGAVNSEGDTPL 143
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 29/168 (17%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAA-------------------AG 46
+H AA G D+ ++L+ + V + TPL +A A
Sbjct: 110 LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAA 169
Query: 47 KLEIVRLLIS------NGADVN--AKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
+ E R+++ N +N A G +AL A +KG+ E+ +LLI +VNI+D
Sbjct: 170 RKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKD 229
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEE 146
G TPLH AA G ++L+ D++ + G T A E+
Sbjct: 230 YDGWTPLHAAAHWGKEEACRILVENLCDMEA--VNKVGQTAFDVADED 275
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
A SG + V LL+ + ++ + T L A +++V+ L+ NGA++N + G
Sbjct: 47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPL 105
L A S G+ +IAE LI A+V + G TPL
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPL 143
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 61/112 (54%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
AA +G++D V L N + V+ D TPL LAA G LEIV +L+ NGADVNA + G
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
+ L A EI E+L+ + A+VN QD G T + G + ++L
Sbjct: 81 RTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L+ AA AG+ + VR+L +NGADVNA GH+ L A G EI E+L+ N A+VN
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPL 140
G TPLH AA +V++LL DVN D +G T
Sbjct: 78 NTGRTPLHLAAWADHLEIVEVLLKH--GADVNAQDKFGKTAF 117
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 54/82 (65%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H AA+ G ++V+ LLKN + V+ +T RTPL LAA A LEIV +L+ +GADVNA+
Sbjct: 51 LHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQD 110
Query: 66 DGGHSALQYACSKGWKEIAELL 87
G +A + G +++AE+L
Sbjct: 111 KFGKTAFDISIDNGNEDLAEIL 132
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 75 ACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDA 134
A G + +L N A+VN D G TPLH AA G +V++LL DVN T
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKN--GADVNATGN 78
Query: 135 YGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
G TPLH A L ++L++ GA ++ Q+K KT D+
Sbjct: 79 TGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDI 119
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L+ AA AG+ + VR+L++NGADVNA G++ L A EI E+L+ + A+VN D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPL 140
G+TPLH AA G +V++LL DVN D +G T
Sbjct: 78 NDGSTPLHLAALFGHLEIVEVLLKHG--ADVNAQDKFGKTAF 117
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 62/112 (55%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
AA +G++D V L+ N + V+ D TPL LAA LEIV +L+ +GADVNA + G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
+ L A G EI E+L+ + A+VN QD G T + G + ++L
Sbjct: 81 STPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 51/82 (62%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H AA ++V+ LLK+ + V+ D+ TPL LAA G LEIV +L+ +GADVNA+
Sbjct: 51 LHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQD 110
Query: 66 DGGHSALQYACSKGWKEIAELL 87
G +A + G +++AE+L
Sbjct: 111 KFGKTAFDISIDNGNEDLAEIL 132
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 75 ACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDA 134
A G + +L+ N A+VN D +G TPLH AA +V++LL DVN D
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHG--ADVNAHDN 78
Query: 135 YGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
G+TPLH A L ++L++ GA ++ Q+K KT D+
Sbjct: 79 DGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDI 119
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 107 RAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQN 166
AA G V++L+ DVN D GNTPLH A + L ++L++ GA ++ +
Sbjct: 20 EAARAGQDDEVRILMANG--ADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 167 KEKKTPLDLLPL 178
+ TPL L L
Sbjct: 78 NDGSTPLHLAAL 89
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 70/145 (48%), Gaps = 3/145 (2%)
Query: 1 NERLLIHWAALSGREDVV-DFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA 59
+ L IH A G D + + L K + V+ D+ TPLI A+A G++E VR L+ GA
Sbjct: 1 GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60
Query: 60 DVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKL 119
D + A SAL A + G+ +I LL+ ++NI D G TPL A V+
Sbjct: 61 DPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEA 120
Query: 120 LLTQRLDIDVNITDAYGNTPLHYAC 144
LL + D+ Y TP+ A
Sbjct: 121 LLARGADLTTEADSGY--TPMDLAV 143
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
A+ G D+V LL+ ++ D TPL+ A ++ V L++ GAD+ +AD G
Sbjct: 76 ASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSG 135
Query: 69 HSALQYACSKGWKEIAELLIHNH 91
++ + A + G++++ + +I NH
Sbjct: 136 YTPMDLAVALGYRKVQQ-VIENH 157
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 70/145 (48%), Gaps = 3/145 (2%)
Query: 1 NERLLIHWAALSGREDVV-DFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA 59
+ L IH A G D + + L K + V+ D+ TPLI A+A G++E VR L+ GA
Sbjct: 1 GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60
Query: 60 DVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKL 119
D + A SAL A + G+ +I LL+ ++NI D G TPL A V+
Sbjct: 61 DPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEA 120
Query: 120 LLTQRLDIDVNITDAYGNTPLHYAC 144
LL + D+ Y TP+ A
Sbjct: 121 LLARGADLTTEADSGY--TPMDLAV 143
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
A+ G D+V LL+ ++ D TPL+ A ++ V L++ GAD+ +AD G
Sbjct: 76 ASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSG 135
Query: 69 HSALQYACSKGWKEIAELLIHNH 91
++ + A + G++++ + +I NH
Sbjct: 136 YTPMDLAVALGYRKVQQ-VIENH 157
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 61/112 (54%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
AA +G++D V L+ N + V+ +D TPL LAA LEIV +L+ NGADVNA G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
+ L G EI E+L+ + A+VN QD G T + G + ++L
Sbjct: 81 ETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L+ AA AG+ + VR+L++NGADVNA+ G + L A EI E+L+ N A+VN D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACE 145
G TPLH A G +V++LL DVN D +G T + +
Sbjct: 78 AIGETPLHLVAMYGHLEIVEVLLKHG--ADVNAQDKFGKTAFDISID 122
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 51/82 (62%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H AA++ ++V+ LLKN + V+ D TPL L A G LEIV +L+ +GADVNA+
Sbjct: 51 LHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQD 110
Query: 66 DGGHSALQYACSKGWKEIAELL 87
G +A + G +++AE+L
Sbjct: 111 KFGKTAFDISIDNGNEDLAEIL 132
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 75 ACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDA 134
A G + +L+ N A+VN +D G TPLH AA +V++LL DVN DA
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNG--ADVNAIDA 78
Query: 135 YGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
G TPLH L ++L++ GA ++ Q+K KT D+
Sbjct: 79 IGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDI 119
Score = 33.9 bits (76), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 105 LHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDI 164
L AA G V++L+ DVN D G TPLH A L ++L++ GA ++
Sbjct: 18 LLEAARAGQDDEVRILMANG--ADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNA 75
Query: 165 QNKEKKTPLDLLPL 178
+ +TPL L+ +
Sbjct: 76 IDAIGETPLHLVAM 89
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 4/168 (2%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H AA+ G + + L+ V+ + +PL A G L V++L+ +GA VN
Sbjct: 7 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 66
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
H+ L AC G + LL+ + A+V + A+P+H AA +G V L+
Sbjct: 67 ADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL-ASPIHEAARRGHVECVNSLIAYGG 125
Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
+ID I+ + TPL+ ACE ++ K L+ GA ++ Q K + +PL
Sbjct: 126 NIDHKIS--HLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPL 170
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 76/172 (44%), Gaps = 4/172 (2%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H A L G V LLK+ + V+ TPL A +G + V LL+ +GA V ++
Sbjct: 40 LHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES 99
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
D S + A +G E LI N++ + TPL+ A VK LL
Sbjct: 100 DLA-SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA 158
Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLP 177
D++ ++PLH A LL+ GA +N E K P++L+P
Sbjct: 159 DVNQGKGQ---DSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVP 207
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 4/168 (2%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H AA+ G + + L+ V+ + +PL A G L V++L+ +GA VN
Sbjct: 63 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 122
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
H+ L AC G + LL+ + A+V + A+P+H AA +G V L+
Sbjct: 123 ADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL-ASPIHEAARRGHVECVNSLIAYGG 181
Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
+ID I+ + TPL+ ACE ++ K L+ GA ++ Q K + +PL
Sbjct: 182 NIDHKIS--HLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPL 226
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 81/185 (43%), Gaps = 5/185 (2%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H A L G V LLK+ + V+ TPL A +G + V LL+ +GA V ++
Sbjct: 96 LHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES 155
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
D S + A +G E LI N++ + TPL+ A VK LL
Sbjct: 156 DLA-SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA 214
Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPH-LAQA 184
D++ ++PLH A LL+ GA +N E K P++L+P LAQ
Sbjct: 215 DVNQGKGQ---DSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL 271
Query: 185 LTEIE 189
E E
Sbjct: 272 FLERE 276
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 82/160 (51%), Gaps = 3/160 (1%)
Query: 17 VVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYAC 76
+ DF+ + S + D T T L LAAA + + + L+ AD N + + G + L A
Sbjct: 39 ISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 98
Query: 77 SKGWKEIAELLIHNHA-NVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAY 135
S + + ++LI N A +++ + G TPL AA + +++ L+ DVN D
Sbjct: 99 SADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH--ADVNAVDDL 156
Query: 136 GNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
G + LH+A + A +L++ GA D+QN ++TPL L
Sbjct: 157 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL 196
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 82/171 (47%), Gaps = 3/171 (1%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA-DVNAK 64
+H AA R D LL+ + + +D+ RTPL A +A + ++LI N A D++A+
Sbjct: 61 LHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120
Query: 65 ADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQR 124
G + L A + + E LI++HA+VN D G + LH AA+ +LL
Sbjct: 121 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 180
Query: 125 LDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
+ D + + TPL A E AK+L+ A DI + + P D+
Sbjct: 181 ANKD--MQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 229
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 3/144 (2%)
Query: 3 RLLIHWAALSGREDVVDFLLKNKSP-VDPKDDTNRTPLILAAAAGKLEIVRLLISNGADV 61
R +H A + + V L++N++ +D + TPLILAA ++ LI++ ADV
Sbjct: 91 RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV 150
Query: 62 NAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL 121
NA D G SAL +A + + A +L+ N AN ++Q+ R TPL AA +G K+LL
Sbjct: 151 NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 210
Query: 122 TQRLDIDVNITDAYGNTPLHYACE 145
+ D ITD P A E
Sbjct: 211 DHFANRD--ITDHMDRLPRDIAQE 232
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 3/137 (2%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L+ AA AG+ + VR+L++NGA G S L A G E+L+ + + +
Sbjct: 6 LLEAARAGQDDEVRILMANGAPFTTDWLGT-SPLHLAAQYGHFSTTEVLLRAGVSRDART 64
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
TPLH AAS+G +V++LL + DVN D T LH+A E +LL++
Sbjct: 65 KVDRTPLHMAASEGHANIVEVLL--KHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122
Query: 159 GARLDIQNKEKKTPLDL 175
GA + Q+K KT D+
Sbjct: 123 GADVHTQSKFCKTAFDI 139
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 51/92 (55%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H AA G + LL+ D + +RTPL +AA+ G IV +L+ +GADVNAK
Sbjct: 38 LHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKD 97
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQ 97
+AL +A +E+ ELLI A+V+ Q
Sbjct: 98 MLKMTALHWATEHNHQEVVELLIKYGADVHTQ 129
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
AA +G++D V L+ N +P D +PL LAA G +L+ G +A+
Sbjct: 9 AARAGQDDEVRILMANGAPF-TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD 67
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDI 127
+ L A S+G I E+L+ + A+VN +D+ T LH A VV+LL+ D+
Sbjct: 68 RTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV 126
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%)
Query: 2 ERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADV 61
+R +H AA G ++V+ LLK+ + V+ KD T L A E+V LLI GADV
Sbjct: 67 DRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV 126
Query: 62 NAKADGGHSALQYACSKGWKEIAELL 87
+ ++ +A + G +++AE+L
Sbjct: 127 HTQSKFCKTAFDISIDNGNEDLAEIL 152
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 81/160 (50%), Gaps = 3/160 (1%)
Query: 17 VVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYAC 76
+ DF+ + S + D T T L LAA + + + L+ AD N + + G + L A
Sbjct: 40 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 99
Query: 77 SKGWKEIAELLIHNHA-NVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAY 135
S + + ++LI N A +++ + G TPL AA + +++ L+ DVN D
Sbjct: 100 SADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH--ADVNAVDDL 157
Query: 136 GNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
G + LH+A + A +L++ GA D+QN ++TPL L
Sbjct: 158 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL 197
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 80/162 (49%), Gaps = 8/162 (4%)
Query: 3 RLLIHWAALSGREDVVDFLLKNKSP-VDPKDDTNRTPLILAAAAGKLEIVRLLISNGADV 61
R +H A + + V L++N++ +D + TPLILAA ++ LI++ ADV
Sbjct: 92 RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV 151
Query: 62 NAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL 121
NA D G SAL +A + + A +L+ N AN ++Q+ R TPL AA +G K+LL
Sbjct: 152 NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 211
Query: 122 TQRLDIDVNITDAYGNTPLHYACEEK-----RLTDAKLLVRC 158
+ D ITD P A E RL D LVR
Sbjct: 212 DHFANRD--ITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 251
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 82/171 (47%), Gaps = 3/171 (1%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA-DVNAK 64
+H AA R D LL+ + + +D+ RTPL A +A + ++LI N A D++A+
Sbjct: 62 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 121
Query: 65 ADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQR 124
G + L A + + E LI++HA+VN D G + LH AA+ +LL
Sbjct: 122 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 181
Query: 125 LDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
+ D + + TPL A E AK+L+ A DI + + P D+
Sbjct: 182 ANKD--MQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 230
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 81/160 (50%), Gaps = 3/160 (1%)
Query: 17 VVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYAC 76
+ DF+ + S + D T T L LAA + + + L+ AD N + + G + L A
Sbjct: 7 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 66
Query: 77 SKGWKEIAELLIHNHA-NVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAY 135
S + + ++LI N A +++ + G TPL AA + +++ L+ DVN D
Sbjct: 67 SADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH--ADVNAVDDL 124
Query: 136 GNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
G + LH+A + A +L++ GA D+QN ++TPL L
Sbjct: 125 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL 164
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 80/162 (49%), Gaps = 8/162 (4%)
Query: 3 RLLIHWAALSGREDVVDFLLKNKSP-VDPKDDTNRTPLILAAAAGKLEIVRLLISNGADV 61
R +H A + + V L++N++ +D + TPLILAA ++ LI++ ADV
Sbjct: 59 RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV 118
Query: 62 NAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL 121
NA D G SAL +A + + A +L+ N AN ++Q+ R TPL AA +G K+LL
Sbjct: 119 NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 178
Query: 122 TQRLDIDVNITDAYGNTPLHYACEEK-----RLTDAKLLVRC 158
+ D ITD P A E RL D LVR
Sbjct: 179 DHFANRD--ITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 82/171 (47%), Gaps = 3/171 (1%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA-DVNAK 64
+H AA R D LL+ + + +D+ RTPL A +A + ++LI N A D++A+
Sbjct: 29 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 88
Query: 65 ADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQR 124
G + L A + + E LI++HA+VN D G + LH AA+ +LL
Sbjct: 89 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 148
Query: 125 LDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
+ D + + TPL A E AK+L+ A DI + + P D+
Sbjct: 149 ANKD--MQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 197
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 81/160 (50%), Gaps = 3/160 (1%)
Query: 17 VVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYAC 76
+ DF+ + S + D T T L LAA + + + L+ AD N + + G + L A
Sbjct: 39 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 98
Query: 77 SKGWKEIAELLIHNHA-NVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAY 135
S + + ++LI N A +++ + G TPL AA + +++ L+ DVN D
Sbjct: 99 SADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH--ADVNAVDDL 156
Query: 136 GNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
G + LH+A + A +L++ GA D+QN ++TPL L
Sbjct: 157 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL 196
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 82/171 (47%), Gaps = 3/171 (1%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA-DVNAK 64
+H AA R D LL+ + + +D+ RTPL A +A + ++LI N A D++A+
Sbjct: 61 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120
Query: 65 ADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQR 124
G + L A + + E LI++HA+VN D G + LH AA+ +LL
Sbjct: 121 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 180
Query: 125 LDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
+ D + + TPL A E AK+L+ A DI + + P D+
Sbjct: 181 ANKD--MQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 229
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 3/144 (2%)
Query: 3 RLLIHWAALSGREDVVDFLLKNKSP-VDPKDDTNRTPLILAAAAGKLEIVRLLISNGADV 61
R +H A + + V L++N++ +D + TPLILAA ++ LI++ ADV
Sbjct: 91 RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV 150
Query: 62 NAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL 121
NA D G SAL +A + + A +L+ N AN ++Q+ R TPL AA +G K+LL
Sbjct: 151 NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 210
Query: 122 TQRLDIDVNITDAYGNTPLHYACE 145
+ D ITD P A E
Sbjct: 211 DHFANRD--ITDHMDRLPRDIAQE 232
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%)
Query: 37 TPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNI 96
TPL AA G E V+ L+S GADVNA++ G++ L A G EI +LL+ A+VN
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70
Query: 97 QDVRGATPLHRAASQGITPVVKLLLTQRLDIDV 129
+ G TP H A G +VKLL + D++
Sbjct: 71 RSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 52/92 (56%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H AA +G + V LL + V+ + TPL LAA G EIV+LL++ GADVNA++
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS 72
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQ 97
G++ A G EI +LL A+VN +
Sbjct: 73 KDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 101 GATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
G TPLH AA G VK LL++ D++ D GNTPLH A + KLL+ GA
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKD--GNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 161 RLDIQNKEKKTPLDL 175
++ ++K+ TP L
Sbjct: 67 DVNARSKDGNTPEHL 81
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 68 GHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDI 127
G++ L A G E + L+ A+VN + G TPLH AA G +VKLLL + D+
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 128 DVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQ 165
+ D GNTP H A + KLL GA ++ +
Sbjct: 69 NARSKD--GNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H AA +G ++V LL + V+ + TP LA G EIV+LL + GADVNA++
Sbjct: 46 LHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Query: 66 DG 67
G
Sbjct: 106 WG 107
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 49/79 (62%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
AA +G++D V L+ N + V KD TPL LAA G LE+V+LL+ GADVNA+ G
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 69 HSALQYACSKGWKEIAELL 87
+A + G +++AE+L
Sbjct: 73 KTAFDISIDNGNEDLAEIL 91
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%)
Query: 38 PLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQ 97
L+ AA AG+ + VR+L++NGADV AK G + L A G E+ +LL+ A+VN Q
Sbjct: 9 KLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQ 68
Query: 98 DVRGATPLHRAASQGITPVVKLL 120
D G T + G + ++L
Sbjct: 69 DKFGKTAFDISIDNGNEDLAEIL 91
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 75 ACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDA 134
A G + +L+ N A+V +D G+TPLH AA G VVKLLL DVN D
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL--EAGADVNAQDK 70
Query: 135 YGNTPLHYACE 145
+G T + +
Sbjct: 71 FGKTAFDISID 81
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 104 PLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLD 163
L AA G V++L+ DV D G+TPLH A L KLL+ GA ++
Sbjct: 9 KLLEAARAGQDDEVRILMANG--ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVN 66
Query: 164 IQNKEKKTPLDL 175
Q+K KT D+
Sbjct: 67 AQDKFGKTAFDI 78
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 28 VDP-KDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAEL 86
+DP + T L +A+ G + V L+ NG+D N K G + L AC+ G ++ EL
Sbjct: 2 IDPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVEL 61
Query: 87 LIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEE 146
L+ + A VN + +PLH AA G +VKLLL+ N + +G P+ Y +E
Sbjct: 62 LLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS--YGASRNAVNIFGLRPVDYTDDE 119
Query: 147 K 147
Sbjct: 120 S 120
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Query: 68 GHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDI 127
G + L A KG E L+ N ++ N++D G TPLH A + G VV+LLL +
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK--A 67
Query: 128 DVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLD 174
VN T ++PLH A + + KLL+ GA + N P+D
Sbjct: 68 LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVD 114
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%)
Query: 5 LIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK 64
L+H A++ G V++LL+N S + KD TPL A G L++V LL+ + A VN
Sbjct: 13 LLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTT 72
Query: 65 ADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPL 105
S L A G +I +LL+ A+ N ++ G P+
Sbjct: 73 GYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 100 RGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCG 159
RG T LH A+ +G P V+ LL D N+ D G TPLH AC L +LL++
Sbjct: 9 RGETLLHIASIKGDIPSVEYLLQN--GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 160 ARLDIQNKEKKTPL 173
A ++ + +PL
Sbjct: 67 ALVNTTGYQNDSPL 80
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 91
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 49/79 (62%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
AA +G++D V L+ N + V+ KD TPL LAA G LEIV +L+ GADVNA+ G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 69 HSALQYACSKGWKEIAELL 87
+A + G +++AE+L
Sbjct: 69 KTAFDISIDNGNEDLAEIL 87
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%)
Query: 38 PLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQ 97
L+ AA AG+ + VR+L++NGADVNAK G++ L A +G EI E+L+ A+VN Q
Sbjct: 5 KLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 64
Query: 98 DVRGATPLHRAASQGITPVVKLL 120
D G T + G + ++L
Sbjct: 65 DKFGKTAFDISIDNGNEDLAEIL 87
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 75 ACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDA 134
A G + +L+ N A+VN +D G TPLH AA +G +V++LL + DVN D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLL--KAGADVNAQDK 66
Query: 135 YGNTPLHYACE 145
+G T + +
Sbjct: 67 FGKTAFDISID 77
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 104 PLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLD 163
L AA G V++L+ DVN D G TPLH A E L ++L++ GA ++
Sbjct: 5 KLLEAARAGQDDEVRILMANG--ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 164 IQNKEKKTPLDL 175
Q+K KT D+
Sbjct: 63 AQDKFGKTAFDI 74
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 81/160 (50%), Gaps = 3/160 (1%)
Query: 17 VVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYAC 76
+ DF+ + S + D T T L LAA + + + L+ AD + + G + L A
Sbjct: 4 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAV 63
Query: 77 SKGWKEIAELLIHNHA-NVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAY 135
S + + ++L+ N A +++ + G TPL AA + +++ L+ DVN D
Sbjct: 64 SADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSH--ADVNAVDDL 121
Query: 136 GNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
G + LH+A + A +L++ GA D+QN +++TPL L
Sbjct: 122 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFL 161
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 3/144 (2%)
Query: 3 RLLIHWAALSGREDVVDFLLKNKSP-VDPKDDTNRTPLILAAAAGKLEIVRLLISNGADV 61
R +H A + + V LL+N++ +D + TPLILAA ++ LI++ ADV
Sbjct: 56 RTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADV 115
Query: 62 NAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL 121
NA D G SAL +A + + A +L+ N AN ++Q+ + TPL AA +G K+LL
Sbjct: 116 NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLL 175
Query: 122 TQRLDIDVNITDAYGNTPLHYACE 145
+ D ITD P A E
Sbjct: 176 DHFANRD--ITDHMDRLPRDIAQE 197
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 3/171 (1%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA-DVNAK 64
+H AA R D LL+ + +D+ RTPL A +A + ++L+ N A D++A+
Sbjct: 26 LHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDLDAR 85
Query: 65 ADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQR 124
G + L A + + E LI++HA+VN D G + LH AA+ +LL
Sbjct: 86 MHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 145
Query: 125 LDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
+ D + + TPL A E AK+L+ A DI + + P D+
Sbjct: 146 ANKD--MQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 194
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 48/79 (60%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
AA +G++D V L+ N + V KD TPL LAA G LE+V+LL+ GADV A+ G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 69 HSALQYACSKGWKEIAELL 87
+A + G +++AE+L
Sbjct: 91 KTAFDISIDNGNEDLAEIL 109
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L+ AA AG+ + VR+L++NGADV AK G + L A G E+ +LL+ A+V QD
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Query: 99 VRGATPLHRAASQGITPVVKLL 120
G T + G + ++L
Sbjct: 88 KFGKTAFDISIDNGNEDLAEIL 109
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 72 LQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNI 131
L A G + +L+ N A+V +D G+TPLH AA G VVKLLL DV
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL--EAGADVXA 85
Query: 132 TDAYGNTPLHYACE 145
D +G T + +
Sbjct: 86 QDKFGKTAFDISID 99
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 105 LHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDI 164
L AA G V++L+ DV D G+TPLH A L KLL+ GA +
Sbjct: 28 LLEAARAGQDDEVRILMAN--GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXA 85
Query: 165 QNKEKKTPLDL 175
Q+K KT D+
Sbjct: 86 QDKFGKTAFDI 96
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 74/156 (47%), Gaps = 3/156 (1%)
Query: 21 LLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA-DVNAKADGGHSALQYACSKG 79
LL + + +D+T RTPL A AA + + ++L+ N A ++NA+ G + L A
Sbjct: 70 LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 80 WKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTP 139
+ + E LI A++N D G T LH AA+ T V +LL + D D TP
Sbjct: 130 IEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQ--DDKDETP 187
Query: 140 LHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
L A E +K L+ A +I + + P D+
Sbjct: 188 LFLAAREGSYEASKALLDNFANREITDHMDRLPRDV 223
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 3/144 (2%)
Query: 3 RLLIHWAALSGREDVVDFLLKNKSP-VDPKDDTNRTPLILAAAAGKLEIVRLLISNGADV 61
R +H A + V LL+N++ ++ + TPLILAA +V LI+ AD+
Sbjct: 85 RTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADI 144
Query: 62 NAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL 121
NA + G +AL +A + E +L+ +HAN + QD + TPL AA +G K LL
Sbjct: 145 NAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALL 204
Query: 122 TQRLDIDVNITDAYGNTPLHYACE 145
+ + ITD P A E
Sbjct: 205 DNFANRE--ITDHMDRLPRDVASE 226
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 76/160 (47%), Gaps = 3/160 (1%)
Query: 17 VVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYAC 76
+ D L + D T T L LAA + + + L+ GAD N++ + G + L A
Sbjct: 33 ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAV 92
Query: 77 SKGWKEIAELLIHNHA-NVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAY 135
+ + ++L+ N A N+N + G TPL AA I +V+ L+T D D+N D
Sbjct: 93 AADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITA--DADINAADNS 150
Query: 136 GNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
G T LH+A +L+ A D Q+ + +TPL L
Sbjct: 151 GKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFL 190
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKD-DTNRTPLILAAAAGKLEIVRLLISNGADVNAK 64
+H A + ++ V LL+ + +D D + R+PLI A L +V+LL+ +GA+VNA+
Sbjct: 120 LHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQ 179
Query: 65 ADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVK 118
G SAL A +G + L+ + A+ ++++ TPL A S+ + +++
Sbjct: 180 MYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 233
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 59/104 (56%), Gaps = 4/104 (3%)
Query: 49 EIVRLLISNGADVNA-KADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHR 107
E V+LL+ GAD++A G S L +A + +LL+ + ANVN Q G++ LH
Sbjct: 130 ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHS 189
Query: 108 AASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTD 151
A+ +G+ P+V+ L+ R D ++ + + +TPL A +R+ D
Sbjct: 190 ASGRGLLPLVRTLV--RSGADSSLKNCHNDTPLMVA-RSRRVID 230
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 85/188 (45%), Gaps = 17/188 (9%)
Query: 6 IHWAALSGR----EDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADV 61
+H A + G +V+ + +D ++ +TPL LA +VRLL++ GA
Sbjct: 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP 72
Query: 62 NAKADGGHSALQYACSKGWKEIAELLIHNHA----NVNIQDVRGATPLHRAASQGITPVV 117
A G +A AC L+ + A ++ ++ G T LH A + V
Sbjct: 73 MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETV 132
Query: 118 KLLLTQRLDID-VNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL--- 173
+LLL + DID V+I G +PL +A E L+ +LL++ GA ++ Q + L
Sbjct: 133 QLLLERGADIDAVDIKS--GRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSA 190
Query: 174 ---DLLPL 178
LLPL
Sbjct: 191 SGRGLLPL 198
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 7/173 (4%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA----DV 61
+H A ++ VV L+ + D +T LA +R L+ + A D+
Sbjct: 50 LHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL 109
Query: 62 NAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVR-GATPLHRAASQGITPVVKLL 120
A+ G +AL A + +E +LL+ A+++ D++ G +PL A +V+LL
Sbjct: 110 EARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL 169
Query: 121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
L +VN G++ LH A L + LVR GA ++N TPL
Sbjct: 170 LQH--GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPL 220
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 98 DVRGATPLHRAASQGITPVVKLL--LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLL 155
D G TPLH A QG P V L L Q+ +++I + TPLH A + +LL
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 156 VRCGA 160
V GA
Sbjct: 66 VTAGA 70
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 133 DAYGNTPLHYACEEKRLTDAKLLV----RCGARLDIQNKEKKTPLDL 175
D G+TPLH A + L LV + G LDI N ++TPL L
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHL 52
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 82/183 (44%), Gaps = 13/183 (7%)
Query: 17 VVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYAC 76
V + L VD D TPL +A +EI + LI GAD+N + S YA
Sbjct: 21 VKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAG 80
Query: 77 SKGWKEI-AELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQ-RLDIDVNITDA 134
++G EI A +L H ++N + G L AA +G VKLLL R DID +
Sbjct: 81 AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID--FQND 138
Query: 135 YGNTPLHYAC---EEKRLTD--AKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIE 189
+G T L A E +L KLL+ GA I++ +T +D + TEI
Sbjct: 139 FGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYAN----QKGYTEIS 194
Query: 190 PIV 192
I+
Sbjct: 195 KIL 197
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 70/120 (58%), Gaps = 7/120 (5%)
Query: 8 WAALSGREDVVDFLLKNKSP-VDPKDDTNRTPLILAAAAGKLEIVRLLISNG-ADVNAKA 65
+A GR +++ ++LK+ +P ++ + LI AA G ++ V+LL+ +G D++ +
Sbjct: 78 YAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQN 137
Query: 66 DGGHSALQYAC-----SKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
D G++AL A ++ +++I +LL+ N A+ +I+D G T + A +G T + K+L
Sbjct: 138 DFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 72 LQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNI 131
L+ A + K++ E+L V+ D G TPL+ A + K L+ + DI N+
Sbjct: 10 LEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI--NL 67
Query: 132 TDAYGNTPLHYACEEKR 148
++ ++P YA + R
Sbjct: 68 QNSISDSPYLYAGAQGR 84
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 36 RTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHN-HANV 94
+T L+LA + G++++V+ L++ ADVN + D G +AL AC G KEIA LL+ ++
Sbjct: 184 QTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDI 243
Query: 95 NIQDVRGATPLHRAASQGITPVVKLLLTQRLDI 127
++ D G+T L A G + + +L + R++I
Sbjct: 244 SLTDRDGSTALMVALDAGQSEIASMLYS-RMNI 275
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 12/167 (7%)
Query: 6 IHWAALSGREDVVDFLLKNK-SPVDPKDDTNRTPLILAAAAG-----KLEIVRLLISNGA 59
+H++ VV LL + VD ++ +P++L A A +E V L G
Sbjct: 115 LHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLG- 173
Query: 60 DVNAKAD-GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVK 118
++NAKA G +AL A S G ++ + L+ A+VN+QD G+T L A G +
Sbjct: 174 NINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAG 233
Query: 119 LLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQ 165
LLL D+++TD G+T L A + + A +L +R++I+
Sbjct: 234 LLLAVP-SCDISLTDRDGSTALMVALDAGQSEIASMLY---SRMNIK 276
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 16/160 (10%)
Query: 3 RLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNG-ADV 61
R L+ + A+S R ++D++ V+ D T L + + +V+ L+ +G V
Sbjct: 87 RHLVTFRAMSAR--LLDYV------VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKV 138
Query: 62 NAKADGGHSALQY---ACSKGWKEIAELL-IHNHANVNIQDVR-GATPLHRAASQGITPV 116
+ + G+S + A K +I +L + N+N + + G T L A S G V
Sbjct: 139 DKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDV 198
Query: 117 VKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLV 156
VK LL + DVN+ D G+T L ACE A LL+
Sbjct: 199 VKALLA--CEADVNVQDDDGSTALMCACEHGHKEIAGLLL 236
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 125 LDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCG-ARLDIQNKEKKTPLDLLPLPHL 181
LD VNI D+ GNT LHY+ + L+ G ++D QN+ +P+ L L L
Sbjct: 100 LDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL 157
Score = 29.6 bits (65), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Query: 61 VNAKADGGHSALQYACSKG-WKEIAELLIHNHANVNIQDVRGATPLHRAA------SQGI 113
VN G++AL Y+ S + + +LL V+ Q+ G +P+ A I
Sbjct: 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDI 163
Query: 114 TPVVKLLLTQRL-DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTP 172
V++L RL +I+ + A G T L A R+ K L+ C A +++Q+ + T
Sbjct: 164 ETVLQLF---RLGNINAKASQA-GQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTA 219
Query: 173 L 173
L
Sbjct: 220 L 220
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 9/152 (5%)
Query: 31 KDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLI-- 88
+++ +TPL LA + EI L+ G D + G++ L AC +G +L
Sbjct: 38 QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQS 97
Query: 89 ----HNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITD-AYGNTPLHYA 143
H H+ + + G T LH A+ G +V+LL++ L DVN + G T LH A
Sbjct: 98 CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS--LGADVNAQEPCNGRTALHLA 155
Query: 144 CEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
+ + LL++CGA ++ + +P L
Sbjct: 156 VDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL 187
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 4/122 (3%)
Query: 48 LEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHR 107
+E++R + + A +N + + + L A EIAE L+ + ++D RG TPLH
Sbjct: 22 MEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHL 81
Query: 108 AASQGITPVVKLL----LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLD 163
A QG V +L T L + T+ G+T LH A L +LLV GA ++
Sbjct: 82 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN 141
Query: 164 IQ 165
Q
Sbjct: 142 AQ 143
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 9/152 (5%)
Query: 31 KDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLI-- 88
+++ +TPL LA + EI L+ G D + G++ L AC +G +L
Sbjct: 41 QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQS 100
Query: 89 ----HNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITD-AYGNTPLHYA 143
H H+ + + G T LH A+ G +V+LL++ L DVN + G T LH A
Sbjct: 101 CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS--LGADVNAQEPCNGRTALHLA 158
Query: 144 CEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
+ + LL++CGA ++ + +P L
Sbjct: 159 VDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL 190
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 4/122 (3%)
Query: 48 LEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHR 107
+E++R + + A +N + + + L A EIAE L+ + ++D RG TPLH
Sbjct: 25 MEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHL 84
Query: 108 AASQGITPVVKLL----LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLD 163
A QG V +L T L + T+ G+T LH A L +LLV GA ++
Sbjct: 85 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN 144
Query: 164 IQ 165
Q
Sbjct: 145 AQ 146
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 46/96 (47%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
+ A G L+ V+ ++ G DVN +GG L YA G EI E L+ A++N D
Sbjct: 11 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 70
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDA 134
TPL A +G VKLLL++ D V D
Sbjct: 71 KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDG 106
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H+AA G+ ++++FLL + ++ D + TPL+ A G + V+LL+S GAD K
Sbjct: 44 LHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKG 103
Query: 66 DGGHSALQ 73
G +A +
Sbjct: 104 PDGLTAFE 111
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%)
Query: 8 WAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADG 67
WA +G D V + V+ + R PL AA G+LEI+ L+ GAD+NA
Sbjct: 13 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 72
Query: 68 GHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVK 118
+ L A +G +LL+ A+ ++ G T +Q I +++
Sbjct: 73 HITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 101 GATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
G PLH AA G +++ LL + DI N D + TPL A E ++ KLL+ GA
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLKGADI--NAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 97
Query: 161 RLDIQNKEKKTPLD 174
++ + T +
Sbjct: 98 DKTVKGPDGLTAFE 111
Score = 30.0 bits (66), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 128 DVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
DVN T G PLHYA + +L + L+ GA ++ +K TPL
Sbjct: 32 DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 77
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 46/96 (47%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
+ A G L+ V+ ++ G DVN +GG L YA G EI E L+ A++N D
Sbjct: 6 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 65
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDA 134
TPL A +G VKLLL++ D V D
Sbjct: 66 KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDG 101
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H+AA G+ ++++FLL + ++ D + TPL+ A G + V+LL+S GAD K
Sbjct: 39 LHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKG 98
Query: 66 DGGHSALQ 73
G +AL+
Sbjct: 99 PDGLTALE 106
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%)
Query: 8 WAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADG 67
WA +G D V + V+ + R PL AA G+LEI+ L+ GAD+NA
Sbjct: 8 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 67
Query: 68 GHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVK 118
+ L A +G +LL+ A+ ++ G T L +Q I +++
Sbjct: 68 HITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQAIKALLQ 118
Score = 33.5 bits (75), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 101 GATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
G PLH AA G +++ LL + DI N D + TPL A E ++ KLL+ GA
Sbjct: 35 GRKPLHYAADCGQLEILEFLLLKGADI--NAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 92
Query: 161 RLDIQNKEKKTPLD 174
++ + T L+
Sbjct: 93 DKTVKGPDGLTALE 106
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 128 DVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
DVN T G PLHYA + +L + L+ GA ++ +K TPL
Sbjct: 27 DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 72
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 71/150 (47%), Gaps = 10/150 (6%)
Query: 42 AAAAGKL-EIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVR 100
AAA G + E+ RLL +A G +ALQ G IA L+ A+ N+QD
Sbjct: 9 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTS 67
Query: 101 GATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
G +P+H AA G +K+L+ DVN+ D G P+H A +E L A
Sbjct: 68 GTSPVHDAARTGFLDTLKVLVEH--GADVNVPDGTGALPIHLAVQEGHTAVVSFLA---A 122
Query: 161 RLDIQNKEKK--TPLDLLPLPHLAQALTEI 188
D+ ++ + TPL+ L L AQ L +I
Sbjct: 123 ESDLHRRDARGLTPLE-LALQRGAQDLVDI 151
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 21 LLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW 80
LLK + + +D + +P+ AA G L+ +++L+ +GADVN G + A +G
Sbjct: 54 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 113
Query: 81 KEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
+ L ++++ +D RG TPL A +G +V +L
Sbjct: 114 TAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDIL 152
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 70/141 (49%), Gaps = 4/141 (2%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L AAA G LE + L+ N +VNA+ G +ALQ G EIA L+ AN +++D
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRGANPDLKD 67
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVR- 157
G +H AA G ++ LL DVNI D GN PLH A +E L + LV+
Sbjct: 68 RTGFAVIHDAARAGFLDTLQTLL--EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 158 CGARLDIQNKEKKTPLDLLPL 178
+ + +N + T DL L
Sbjct: 126 TASNVGHRNHKGDTACDLARL 146
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 5 LIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA-DVNA 63
+IH AA +G D + LL+ ++ V+ +D+ PL LAA G L +V L+ + A +V
Sbjct: 73 VIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH 132
Query: 64 KADGGHSALQYACSKGWKEIAELLIHNHAN--VNIQ 97
+ G +A A G E+ L+ N A N+Q
Sbjct: 133 RNHKGDTACDLARLYGRNEVVSLMQANGAGGATNLQ 168
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 70/141 (49%), Gaps = 4/141 (2%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L AAA G LE + L+ N +VNA+ G +ALQ G EIA L+ AN +++D
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLKD 67
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVR- 157
G +H AA G ++ LL DVNI D GN PLH A +E L + LV+
Sbjct: 68 RTGFAVIHDAARAGFLDTLQTLL--EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 158 CGARLDIQNKEKKTPLDLLPL 178
+ + +N + T DL L
Sbjct: 126 TASNVGHRNHKGDTACDLARL 146
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 5 LIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA-DVNA 63
+IH AA +G D + LL+ ++ V+ +D+ PL LAA G L +V L+ + A +V
Sbjct: 73 VIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH 132
Query: 64 KADGGHSALQYACSKGWKEIAELLIHNHA 92
+ G +A A G E+ L+ N A
Sbjct: 133 RNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 71/150 (47%), Gaps = 10/150 (6%)
Query: 42 AAAAGKL-EIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVR 100
AAA G + E+ RLL +A G +ALQ G IA L+ A+ N+QD
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTS 73
Query: 101 GATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
G +P+H AA G +K+L+ DVN+ D G P+H A +E L A
Sbjct: 74 GTSPVHDAARTGFLDTLKVLVEH--GADVNVPDGTGALPIHLAVQEGHTAVVSFLA---A 128
Query: 161 RLDIQNKEKK--TPLDLLPLPHLAQALTEI 188
D+ ++ + TPL+ L L AQ L +I
Sbjct: 129 ESDLHRRDARGLTPLE-LALQRGAQDLVDI 157
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 21 LLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW 80
LLK + + +D + +P+ AA G L+ +++L+ +GADVN G + A +G
Sbjct: 60 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 119
Query: 81 KEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
+ L ++++ +D RG TPL A +G +V +L
Sbjct: 120 TAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDIL 158
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 70/141 (49%), Gaps = 4/141 (2%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L AAA G LE + L+ N +VNA+ G +ALQ G EIA L+ AN +++D
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRGANPDLKD 67
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVR- 157
G +H AA G ++ LL DVNI D GN PLH A +E L + LV+
Sbjct: 68 RTGNAVIHDAARAGFLDTLQTLL--EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 158 CGARLDIQNKEKKTPLDLLPL 178
+ + +N + T DL L
Sbjct: 126 TASNVGHRNHKGDTACDLARL 146
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 5 LIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA-DVNA 63
+IH AA +G D + LL+ ++ V+ +D+ PL LAA G L +V L+ + A +V
Sbjct: 73 VIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH 132
Query: 64 KADGGHSALQYACSKGWKEIAELLIHNHAN--VNIQ 97
+ G +A A G E+ L+ N A N+Q
Sbjct: 133 RNHKGDTACDLARLYGRNEVVSLMQANGAGGATNLQ 168
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 71/141 (50%), Gaps = 4/141 (2%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L AAA G LE + L+ N +VNA+ G +ALQ G EIA L+ AN +++D
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRGANPDLKD 67
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVR- 157
G +H AA G ++ LL + DVNI D GN PLH A +E L + LV+
Sbjct: 68 RTGFAVIHDAARAGFLDTLQTLLENQ--ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 158 CGARLDIQNKEKKTPLDLLPL 178
+ + +N + T DL L
Sbjct: 126 TASNVGHRNHKGDTACDLARL 146
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 5 LIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA-DVNA 63
+IH AA +G D + LL+N++ V+ +D+ PL LAA G L +V L+ + A +V
Sbjct: 73 VIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH 132
Query: 64 KADGGHSALQYACSKGWKEIAELLIHNHAN--VNIQ 97
+ G +A A G E+ L+ N A N+Q
Sbjct: 133 RNHKGDTACDLARLYGRNEVVSLMQANGAGGATNLQ 168
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 66/125 (52%), Gaps = 3/125 (2%)
Query: 22 LKNK-SPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW 80
L+N+ + +D + TPLILAA ++ LI++ ADVNA D G SAL +A +
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 60
Query: 81 KEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPL 140
+ A +L+ N AN ++Q+ + TPL AA +G K+LL + D ITD P
Sbjct: 61 VDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRD--ITDHMDRLPR 118
Query: 141 HYACE 145
A E
Sbjct: 119 DIAQE 123
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 101 GATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
G TPL AA + +++ L+ DVN D G + LH+A + A +L++ GA
Sbjct: 15 GTTPLILAARLALEGMLEDLINSH--ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 72
Query: 161 RLDIQNKEKKTPL 173
D+QN +++TPL
Sbjct: 73 NKDMQNNKEETPL 85
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 54 LISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGI 113
L + D++A+ G + L A + + E LI++HA+VN D G + LH AA+
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 60
Query: 114 TPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
+LL + D + + TPL A E AK+L+ A DI + + P
Sbjct: 61 VDAAVVLLKNGANKD--MQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPR 118
Query: 174 DL 175
D+
Sbjct: 119 DI 120
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
+HWAA D LLKN + D +++ TPL LAA G E ++L+ + A+
Sbjct: 52 LHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFAN 106
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 57/112 (50%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
AA E +++ L+ + + V+ DD ++ L AAA ++ +L+ NGA+ + + +
Sbjct: 22 AARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKE 81
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
+ L A +G E A++L+ + AN +I D P A + +V+LL
Sbjct: 82 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 133
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 38 PLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAE-LLIHNHANVNI 96
PL AA G L +R + N VN G +AL +AC G K+I E L + +N
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 97 QDVRGATPLHRAASQGITPVVKLLLTQRLDIDV 129
Q+ G T LH AA +G +V+LLL + D+
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKGARTDL 168
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 88 IHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEK 147
+ N VN D G+T L+ A G +V+ L TQ +I++N + G+T LH A +
Sbjct: 93 LDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQP-NIELNQQNKLGDTALHAAAWKG 151
Query: 148 RLTDAKLLVRCGARLDIQNKEKKTPLD 174
+LL+ GAR D++N EKK D
Sbjct: 152 YADIVQLLLAKGARTDLRNIEKKLAFD 178
Score = 30.0 bits (66), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 6 IHWAALSGREDVVDFLLKNKS-PVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA 59
++WA G +D+V+ L + ++ ++ T L AA G +IV+LL++ GA
Sbjct: 110 LYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGA 164
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 70/141 (49%), Gaps = 4/141 (2%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L AAA G LE + L+ N +VNA+ G +ALQ G EIA L+ AN +++D
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRGANPDLKD 67
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVR- 157
G +H AA G ++ LL DVNI D GN PLH A +E L + LV+
Sbjct: 68 RTGFAVIHDAARAGQLDTLQTLL--EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 158 CGARLDIQNKEKKTPLDLLPL 178
+ + +N + T DL L
Sbjct: 126 TASNVGHRNHKGDTACDLARL 146
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Query: 20 FLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKG 79
LL+ +P D KD T + AA AG+L+ ++ L+ ADVN + + G+ L A +G
Sbjct: 56 LLLRGANP-DLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG 114
Query: 80 WKEIAELLI-HNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
+ E L+ H +NV ++ +G T A G VV L+
Sbjct: 115 HLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 5 LIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA-DVNA 63
+IH AA +G+ D + LL+ ++ V+ +D+ PL LAA G L +V L+ + A +V
Sbjct: 73 VIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH 132
Query: 64 KADGGHSALQYACSKGWKEIAELLIHNHAN--VNIQ 97
+ G +A A G E+ L+ N A N+Q
Sbjct: 133 RNHKGDTACDLARLYGRNEVVSLMQANGAGGATNLQ 168
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 3 RLLIHWAALSGREDVVDFLLKNK-SPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADV 61
R +H+AA +V +L+ K S D +D+ +TP+ LAA G++E+V LI GA V
Sbjct: 280 RTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASV 339
Query: 62 NAKADGGHSALQYACSKGWKEIAELL 87
A H+A Q A + I ++
Sbjct: 340 EAVDATDHTARQLAQANNHHNIVDIF 365
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 83/194 (42%), Gaps = 21/194 (10%)
Query: 3 RLLIHW-AALSGREDVVDFLLKNK-------SPVDPKDDTNRTPLILAAAAGKLEIVRLL 54
R ++HW A+ S E D ++ + V+ D TPL LA A + +V L
Sbjct: 126 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYL 185
Query: 55 ISNGADVNAKADGGHSAL-QYACSKGWKEIAELLIHNHANVNIQ--DVRGATPLHRAA-S 110
GAD SAL Q A ++ + L +I+ D G T L A +
Sbjct: 186 XKAGADPTIYNKSERSALHQAAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAHN 245
Query: 111 QGITPV--VKLLLTQRLDIDVN-----ITDAY-GNTPLHYACEEKRLTDAKLLV-RCGAR 161
+G V KLL+ + +D + ++ Y G T LHYA + K LV G+
Sbjct: 246 EGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSN 305
Query: 162 LDIQNKEKKTPLDL 175
D Q+++ KTP+ L
Sbjct: 306 KDKQDEDGKTPIXL 319
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK-ADG 67
AA E + LL+++ VD D+ RT L+ A G + VRLL GAD++ + G
Sbjct: 51 AARKADEQALSQLLEDRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG 109
Query: 68 GHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRA 108
G +AL A E+ E L+ A++ ++D RG T L A
Sbjct: 110 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 4/131 (3%)
Query: 37 TPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNI 96
TP AA + + L+ + DV+A + G +AL + G + LL A+++
Sbjct: 46 TPWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 104
Query: 97 QDVRGA-TPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLL 155
+D+RG T LH AA VV+ L+ L D+ + D G T L A E + T
Sbjct: 105 RDMRGGLTALHMAAGYVRPEVVEALV--ELGADIEVEDERGLTALELAREILKTTPKGNP 162
Query: 156 VRCGARLDIQN 166
++ G R+ ++
Sbjct: 163 MQFGRRIGLEK 173
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK-ADG 67
AA E + LL+++ VD D+ RT L+ A G + VRLL GAD++ + G
Sbjct: 52 AARKADEQALSQLLEDRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG 110
Query: 68 GHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRA 108
G +AL A E+ E L+ A++ ++D RG T L A
Sbjct: 111 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 4/131 (3%)
Query: 37 TPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNI 96
TP AA + + L+ + DV+A + G +AL + G + LL A+++
Sbjct: 47 TPWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 105
Query: 97 QDVRGA-TPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLL 155
+D+RG T LH AA VV+ L+ L D+ + D G T L A E + T
Sbjct: 106 RDMRGGLTALHMAAGYVRPEVVEALV--ELGADIEVEDERGLTALELAREILKTTPKGNP 163
Query: 156 VRCGARLDIQN 166
++ G R+ ++
Sbjct: 164 MQFGRRIGLEK 174
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L AAA G++E VR L+ GAD NA G +Q G ++AELL+ + A N D
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQV-MMMGSAQVAELLLLHGAEPNCAD 74
Query: 99 VRGAT-PLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLL 155
T P+H AA +G + L++ R +++ DA+G P+ A E+ A+ L
Sbjct: 75 PATLTRPVHDAAREGF--LDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYL 130
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 89/233 (38%), Gaps = 54/233 (23%)
Query: 6 IHWAALSGREDVVDFLL---KNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVN 62
+H A + E +DFLL +D ++D +T L LAA G+ V L + GA V
Sbjct: 13 LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL 72
Query: 63 AKADGGHSALQYACSKGWKEIAELLI--------------------------HNHANVNI 96
GGH+AL AC A +L+ H A V+
Sbjct: 73 VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDS 132
Query: 97 Q---------------------DVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAY 135
Q + G TPLH A +V+LL D++
Sbjct: 133 QPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN-KPEPTC 191
Query: 136 GNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLD---LLPLPHLAQAL 185
G TPLH A E + + +LL++ GA + +TPL L P P LA+ L
Sbjct: 192 GRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLL 244
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 89/233 (38%), Gaps = 54/233 (23%)
Query: 6 IHWAALSGREDVVDFLL---KNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVN 62
+H A + E +DFLL +D ++D +T L LAA G+ V L + GA V
Sbjct: 13 LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL 72
Query: 63 AKADGGHSALQYACSKGWKEIAELLI--------------------------HNHANVNI 96
GGH+AL AC A +L+ H A V+
Sbjct: 73 VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDS 132
Query: 97 Q---------------------DVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAY 135
Q + G TPLH A +V+LL D++
Sbjct: 133 QPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN-KPEPTC 191
Query: 136 GNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLD---LLPLPHLAQAL 185
G TPLH A E + + +LL++ GA + +TPL L P P LA+ L
Sbjct: 192 GRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLL 244
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 9/137 (6%)
Query: 42 AAAAGKL-EIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVR 100
AAA G + E+ RLL +A G +ALQ G +A L+ A+ N+QD
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSPAVALELLKQGASPNVQDAS 73
Query: 101 GATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
G +P+H AA G +K+L+ DVN D+ G+ P+H A E + L
Sbjct: 74 GTSPVHDAARTGFLDTLKVLVEH--GADVNALDSTGSLPIHLAIREGHSSVVSFLA---P 128
Query: 161 RLDIQNKEKK--TPLDL 175
D+ +++ TPL+L
Sbjct: 129 ESDLHHRDASGLTPLEL 145
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 54 LISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGI 113
L+ GA N + G S + A G+ + ++L+ + A+VN D G+ P+H A +G
Sbjct: 60 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 119
Query: 114 TPVVKLLLTQRLDIDVNITDAYGNTPLHYA 143
+ VV L + D++ DA G TPL A
Sbjct: 120 SSVVSFLAPES---DLHHRDASGLTPLELA 146
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 21 LLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW 80
LLK + + +D + +P+ AA G L+ +++L+ +GADVNA G + A +G
Sbjct: 60 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 119
Query: 81 KEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
+ L ++++ +D G TPL A +G ++ +L
Sbjct: 120 SSVVSFLA-PESDLHHRDASGLTPLELARQRGAQNLMDIL 158
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 9/137 (6%)
Query: 42 AAAAGKL-EIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVR 100
AAA G + E+ RLL +A G +ALQ G +A L+ A+ N+QD
Sbjct: 17 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSPAVALELLKQGASPNVQDAS 75
Query: 101 GATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
G +P+H AA G +K+L+ DVN D+ G+ P+H A E + L
Sbjct: 76 GTSPVHDAARTGFLDTLKVLVEH--GADVNALDSTGSLPIHLAIREGHSSVVSFLA---P 130
Query: 161 RLDIQNKEKK--TPLDL 175
D+ +++ TPL+L
Sbjct: 131 ESDLHHRDASGLTPLEL 147
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 54 LISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGI 113
L+ GA N + G S + A G+ + ++L+ + A+VN D G+ P+H A +G
Sbjct: 62 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 121
Query: 114 TPVVKLLLTQRLDIDVNITDAYGNTPLHYA 143
+ VV L + D++ DA G TPL A
Sbjct: 122 SSVVSFLAPES---DLHHRDASGLTPLELA 148
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 21 LLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW 80
LLK + + +D + +P+ AA G L+ +++L+ +GADVNA G + A +G
Sbjct: 62 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 121
Query: 81 KEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
+ L ++++ +D G TPL A +G ++ +L
Sbjct: 122 SSVVSFLA-PESDLHHRDASGLTPLELARQRGAQNLMDIL 160
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 35 NRTPLIL---AAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNH 91
N PL L ++ G+ ++V+ +I D + D G +AL A G EI + L+
Sbjct: 34 NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFG 93
Query: 92 ANVNIQDVRGATPLHRAASQGITPVVKLLL 121
NVN D G TPLH AAS V K L+
Sbjct: 94 VNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 78 KGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGN 137
+G ++ + +I+ + ++ + G T LH A G T +VK L+ + ++VN D+ G
Sbjct: 47 EGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV--QFGVNVNAADSDGW 104
Query: 138 TPLHYACEEKRLTDAKLLVRCGA 160
TPLH A + K LV GA
Sbjct: 105 TPLHCAASCNNVQVCKFLVESGA 127
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H A +G ++V FL++ V+ D TPL AA+ +++ + L+ +GA V A
Sbjct: 74 LHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT 133
Query: 66 DGGHSALQYACSK------GWKEIAELLIHNHANVNIQD 98
+S +Q A K G+ + ++ L + I +
Sbjct: 134 ---YSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMN 169
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 3/115 (2%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
++L G D+V ++ +D T L A AG EIV+ L+ G +VNA G
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103
Query: 69 HSALQYACSKGWKEIAELLIHNHANV---NIQDVRGATPLHRAASQGITPVVKLL 120
+ L A S ++ + L+ + A V D++ A +G T + L
Sbjct: 104 WTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 158
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L+ ++ G+ ++V+ +I D + D G +AL A G EI + L+ NVN D
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Query: 99 VRGATPLHRAASQGITPVVKLLL 121
G TPLH AAS V K L+
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLV 123
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 78 KGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGN 137
+G ++ + +I+ + ++ + G T LH A G T +VK L+ + ++VN D+ G
Sbjct: 47 EGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV--QFGVNVNAADSDGW 104
Query: 138 TPLHYACEEKRLTDAKLLVRCGA 160
TPLH A + K LV GA
Sbjct: 105 TPLHCAASCNNVQVCKFLVESGA 127
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H A +G ++V FL++ V+ D TPL AA+ +++ + L+ +GA V A
Sbjct: 74 LHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT 133
Query: 66 DGGHSALQYACSK------GWKEIAELLIHNHANVNIQD 98
+S +Q A K G+ + ++ L + I +
Sbjct: 134 ---YSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMN 169
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 3/115 (2%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
++L G D+V ++ +D T L A AG EIV+ L+ G +VNA G
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103
Query: 69 HSALQYACSKGWKEIAELLIHNHANV---NIQDVRGATPLHRAASQGITPVVKLL 120
+ L A S ++ + L+ + A V D++ A +G T + L
Sbjct: 104 WTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 158
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L AAA G++E VR L+ GA+ NA G +Q G +AELL+ + A N D
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQV-MMMGSARVAELLLLHGAEPNCAD 74
Query: 99 VRGAT-PLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACE 145
T P+H AA +G + L++ R +++ DA+G P+ A E
Sbjct: 75 PATLTRPVHDAAREGF--LDTLVVLHRAGARLDVRDAWGRLPVDLAEE 120
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 64 KAD-GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLT 122
KAD GHSA YA + + L++ A N+ + PLH+AA+ T +VK+LL
Sbjct: 26 KADVHGHSASYYAIADNNVRLVCTLLNAGALKNL--LENEFPLHQAATLEDTKIVKILLF 83
Query: 123 QRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNK 167
LD D D GNT L+YA + KL V+ RL K
Sbjct: 84 SGLD-DSQFDDK-GNTALYYAVDSGNXQTVKLFVKKNWRLXFYGK 126
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%)
Query: 35 NRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANV 94
N TPLI A AA L L+ NGA+VN G L +A G +A L + A++
Sbjct: 235 NATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADL 294
Query: 95 NIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
+D G PL A +V LL ++
Sbjct: 295 GARDSEGRDPLTIAMETANADIVTLLRLAKM 325
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 55 ISNGADVNAKADGGHSA--LQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQG 112
+++GADVN G +A L A + E L+ N ANVN D G PLH A G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 113 ITPVVKLLLTQRLDIDVNITDAYGNTPLHYACE 145
T + L L + D+ D+ G PL A E
Sbjct: 280 HTGLACLFLKRGADLGAR--DSEGRDPLTIAME 310
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%)
Query: 17 VVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYAC 76
+FLL+N + V+ D R PL A G + L + GAD+ A+ G L A
Sbjct: 250 ACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAM 309
Query: 77 SKGWKEIAELL 87
+I LL
Sbjct: 310 ETANADIVTLL 320
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%)
Query: 35 NRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANV 94
N TPLI A AA L L+ NGA+VN G L +A G +A L + A++
Sbjct: 235 NATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADL 294
Query: 95 NIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
+D G PL A +V LL ++
Sbjct: 295 GARDSEGRDPLTIAMETANADIVTLLRLAKM 325
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 55 ISNGADVNAKADGGHSA--LQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQG 112
+++GADVN G +A L A + E L+ N ANVN D G PLH A G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 113 ITPVVKLLLTQRLDIDVNITDAYGNTPLHYACE 145
T + L L + D+ D+ G PL A E
Sbjct: 280 HTGLACLFLKRGADLGAR--DSEGRDPLTIAME 310
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%)
Query: 17 VVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYAC 76
+FLL+N + V+ D R PL A G + L + GAD+ A+ G L A
Sbjct: 250 ACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAM 309
Query: 77 SKGWKEIAELL 87
+I LL
Sbjct: 310 ETANADIVTLL 320
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%)
Query: 35 NRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANV 94
N TPLI A AA L L+ NGA+VN G L +A G +A L + A++
Sbjct: 235 NATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADL 294
Query: 95 NIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
+D G PL A +V LL ++
Sbjct: 295 GARDSEGRDPLTIAMETANADIVTLLRLAKM 325
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 55 ISNGADVNAKADGGHSA--LQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQG 112
+++GADVN G +A L A + E L+ N ANVN D G PLH A G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 113 ITPVVKLLLTQRLDIDVNITDAYGNTPLHYACE 145
T + L L + D+ D+ G PL A E
Sbjct: 280 HTGLACLFLKRGADLGAR--DSEGRDPLTIAME 310
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%)
Query: 17 VVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYAC 76
+FLL+N + V+ D R PL A G + L + GAD+ A+ G L A
Sbjct: 250 ACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAM 309
Query: 77 SKGWKEIAELL 87
+I LL
Sbjct: 310 ETANADIVTLL 320
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 38 PLIL---AAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANV 94
PL+L AA G+LE+V+ + D + + G +AL A I + LI ANV
Sbjct: 21 PLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV 80
Query: 95 NIQDVRGATPLHRAASQGITPVVKLLLTQ 123
N D G TPLH AAS T V+ + L Q
Sbjct: 81 NSPDSHGWTPLHCAASCNDT-VICMALVQ 108
Score = 30.4 bits (67), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNA 63
+H A +VDFL+ + V+ D TPL AA+ I L+ +GA + A
Sbjct: 58 LHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFA 115
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
AAL+G +VV +K + ++ T L A IV LI+ GA+VN+ G
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVR-GATPLHR 107
+ L A S I L+ + A + + GAT +
Sbjct: 88 WTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEK 127
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 101 GATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
G T LH A +V L+T +VN D++G TPLH A LV+ GA
Sbjct: 54 GITALHNAICGANYSIVDFLITA--GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGA 111
Query: 161 RL 162
+
Sbjct: 112 AI 113
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 8 WAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAA---GKLEIVRLLISNGADVNAK 64
+ L D VD L K P+ + + T L LA + L IV L+ N +++ +
Sbjct: 144 FGLLQAYADGVD--LTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ 201
Query: 65 ADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPL 105
G +AL Y C E +LL+ A++ I + G TPL
Sbjct: 202 TGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPL 242
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 103 TPLH---RAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCG 159
T LH R+ + +V L+ ++D G+T LHY C KLL+R
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQT--GKGSTALHYCCLTDNAECLKLLLRGK 228
Query: 160 ARLDIQNKEKKTPLDL---LPLPHLAQALTE 187
A ++I N+ +TPLD+ L H + LT+
Sbjct: 229 ASIEIANESGETPLDIAKRLKHEHCEELLTQ 259
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 83 IAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPL-- 140
I + L+ N N++ Q +G+T LH +KLLL + I+ I + G TPL
Sbjct: 187 IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIE--IANESGETPLDI 244
Query: 141 -----HYACEE 146
H CEE
Sbjct: 245 AKRLKHEHCEE 255
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 17 VVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYAC 76
+VDFL++N +D + T L E ++LL+ A + + G + L
Sbjct: 187 IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPL---- 242
Query: 77 SKGWKEIAELLIHNHA 92
+IA+ L H H
Sbjct: 243 -----DIAKRLKHEHC 253
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 18/93 (19%)
Query: 32 DDTNR--TPLILAAAAGKLEIVRLLISNGADVNAKADG-----GHSALQY---------A 75
DD R + L +A L+ V+LL+ NGA+V+A+A G G Y A
Sbjct: 90 DDYYRGHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAA 149
Query: 76 CSKGWKEIAELLIHNHANVNIQ--DVRGATPLH 106
C+K W ++ LL + H ++Q D +G T LH
Sbjct: 150 CTKQWDVVSYLLENPHQPASLQATDSQGNTVLH 182
Score = 33.5 bits (75), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 56/138 (40%), Gaps = 30/138 (21%)
Query: 68 GHSALQYACSKGWKEIAELLIHNHANVNIQDV-------------RGATPLHRAASQGIT 114
GHSAL A K + +LL+ N ANV+ + G PL AA
Sbjct: 95 GHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQW 154
Query: 115 PVVKLLLTQ-RLDIDVNITDAYGNTPLHY-------ACEEKRLTDAKL--LVRCGARL-- 162
VV LL + TD+ GNT LH + E L + L++ GARL
Sbjct: 155 DVVSYLLENPHQPASLQATDSQGNTVLHALVXISDNSAENIALVTSXYDGLLQAGARLCP 214
Query: 163 -----DIQNKEKKTPLDL 175
DI+N + TPL L
Sbjct: 215 TVQLEDIRNLQDLTPLKL 232
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 55/137 (40%), Gaps = 35/137 (25%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L AAA G++E VR L+ GA NA G +Q G +AELL+ + A N D
Sbjct: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQV-MMMGSARVAELLLLHGAEPNCAD 74
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
LT+ P+H A E L +L R
Sbjct: 75 -------------------PATLTR---------------PVHDAAREGFLDTLVVLHRA 100
Query: 159 GARLDIQNKEKKTPLDL 175
GARLD+++ + P+DL
Sbjct: 101 GARLDVRDAWGRLPVDL 117
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 20/102 (19%)
Query: 38 PLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQ---------YACSKGWKEIAELLI 88
PL AA G EIVRLLI +GAD+ A+ G++ L +AC ++ LL+
Sbjct: 124 PLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFAC-----QMYNLLL 178
Query: 89 HNHANVNIQDV------RGATPLHRAASQGITPVVKLLLTQR 124
+++ + +G TP A +G + + L+ +R
Sbjct: 179 SYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKR 220
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 21/126 (16%)
Query: 19 DFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNG---ADVNAKADGGHSALQ-- 73
DF K K P PL LAA +L IV+ L+ N AD++A+ G++ L
Sbjct: 134 DFFKKTKG--RPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHAL 191
Query: 74 -----------YACSKGWKEIAELLIHNHANVNIQDV---RGATPLHRAASQGITPVVKL 119
+ + EI L H + ++++ +G TPL AAS G V+
Sbjct: 192 VEVADNTVDNTKFVTSXYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAY 251
Query: 120 LLTQRL 125
+L + +
Sbjct: 252 ILQREI 257
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 44/111 (39%), Gaps = 20/111 (18%)
Query: 36 RTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVN 95
+T L +A +V LL+ NGADV A A+G + +KG
Sbjct: 102 QTALHIAIERRNXTLVTLLVENGADVQAAANGDF----FKKTKGRPGF------------ 145
Query: 96 IQDVRGATPLHRAASQGITPVVKLLLTQRLD-IDVNITDAYGNTPLHYACE 145
G PL AA +VK LL D++ D+ GNT LH E
Sbjct: 146 ---YFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVE 193
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 127 IDVNITDAY--GNTPLHYACEEKRLTDAKLLVRCGARLDIQ 165
++ + TD+Y G T LH A E + T LLV GA D+Q
Sbjct: 90 VNASYTDSYYKGQTALHIAIERRNXTLVTLLVENGA--DVQ 128
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 33.9 bits (76), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 16/86 (18%)
Query: 37 TPLILAAAAGKLEIVRLLISNGADVNAKADG----GHSALQY----------ACSKGWKE 82
+ L +A L+ V+LL+ NGADV+ +A G H + AC+K W
Sbjct: 105 SALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDV 164
Query: 83 IAELLIHNH--ANVNIQDVRGATPLH 106
+ LL + H A++ D G T LH
Sbjct: 165 VTYLLENPHQPASLEATDSLGNTVLH 190
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 14/88 (15%)
Query: 68 GHSALQYACSKGWKEIAELLIHNHANVNIQDV-------------RGATPLHRAASQGIT 114
GHSAL A K + +LL+ N A+V+++ G PL AA
Sbjct: 103 GHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 162
Query: 115 PVVKLLLTQ-RLDIDVNITDAYGNTPLH 141
VV LL + TD+ GNT LH
Sbjct: 163 DVVTYLLENPHQPASLEATDSLGNTVLH 190
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 33.5 bits (75), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 16/86 (18%)
Query: 37 TPLILAAAAGKLEIVRLLISNGADVNAKADG----GHSALQY----------ACSKGWKE 82
+ L +A L+ V+LL+ NGADV+ +A G H + AC+K W
Sbjct: 92 SALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDV 151
Query: 83 IAELLIHNH--ANVNIQDVRGATPLH 106
+ LL + H A++ D G T LH
Sbjct: 152 VTYLLENPHQPASLEATDSLGNTVLH 177
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 14/88 (15%)
Query: 68 GHSALQYACSKGWKEIAELLIHNHANVNIQDV-------------RGATPLHRAASQGIT 114
GHSAL A K + +LL+ N A+V+++ G PL AA
Sbjct: 90 GHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 149
Query: 115 PVVKLLLTQ-RLDIDVNITDAYGNTPLH 141
VV LL + TD+ GNT LH
Sbjct: 150 DVVTYLLENPHQPASLEATDSLGNTVLH 177
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 57/138 (41%), Gaps = 31/138 (22%)
Query: 51 VRLLISNGADVNAKADG--------------GHSALQYACSKGWKEIAELLI---HNHAN 93
V LL++ GADV+A+A G G L A I L H A+
Sbjct: 107 VELLVAQGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVNYLTENPHKKAD 166
Query: 94 VNIQDVRGATPLH---------RAASQGITPVVKLLLTQ--RLDIDVNITDAYGN---TP 139
+ QD RG T LH R ++ +T + LLL + RL D N+ N +P
Sbjct: 167 MRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLLKCARLFPDSNLEAVLNNDGLSP 226
Query: 140 LHYACEEKRLTDAKLLVR 157
L A + ++ + ++R
Sbjct: 227 LMMAAKTGKIGIFQHIIR 244
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 40 ILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDV 99
+ A L +V +I NG ++AKA G++AL YA + +LL+ A V +
Sbjct: 179 VKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNE 238
Query: 100 RGATPL 105
G T L
Sbjct: 239 AGETAL 244
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 107 RAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQN 166
+ A+Q P+V ++ +D D GNT LHYA + KLL++ A + N
Sbjct: 180 KVANQASLPLVDFIIQNGGHLDAKAAD--GNTALHYAALYNQPDCLKLLLKGRALVGTVN 237
Query: 167 KEKKTPLDL 175
+ +T LD+
Sbjct: 238 EAGETALDI 246
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%)
Query: 43 AAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGA 102
A L +V +I NG ++AKA G++AL YA + +LL+ A V + G
Sbjct: 201 ANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGE 260
Query: 103 TPL 105
T L
Sbjct: 261 TAL 263
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 107 RAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQN 166
+ A+Q P+V ++ +D D GNT LHYA + KLL++ A + N
Sbjct: 199 KVANQASLPLVDFIIQNGGHLDAKAAD--GNTALHYAALYNQPDCLKLLLKGRALVGTVN 256
Query: 167 KEKKTPLDL 175
+ +T LD+
Sbjct: 257 EAGETALDI 265
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 31/138 (22%)
Query: 51 VRLLISNGADVNAKADG--------------GHSALQYACSKGWKEIAELLI---HNHAN 93
V LL+ GADV+A+A G G L A I L H A+
Sbjct: 109 VELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD 168
Query: 94 VNIQDVRGATPLH---------RAASQGITPVVKLLLTQ--RLDIDVNITDAYGN---TP 139
+ QD RG T LH R ++ +T + LLL + +L D N+ N +P
Sbjct: 169 LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSP 228
Query: 140 LHYACEEKRLTDAKLLVR 157
L A + ++ + ++R
Sbjct: 229 LMMAAKTGKIGIFQHIIR 246
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 8/129 (6%)
Query: 6 IHWAALSGRE--DVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLI-----SNG 58
+HW G E + + L++ + KD + TPL A E + L +
Sbjct: 142 LHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNREALDLXXDTVPSKSS 201
Query: 59 ADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVK 118
++ G+S L +A W+++A + +VN +D PL+ + + K
Sbjct: 202 LRLDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLYLSVRAAXVLLTK 261
Query: 119 LLLTQRLDI 127
LL Q+ D+
Sbjct: 262 ELL-QKTDV 269
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 105 LHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCG 159
+H AA +G T V+ L+ + I + +G T LH AC+ + AK L G
Sbjct: 24 IHVAARKGQTDEVRRLI--ETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG 76
>pdb|3I10|A Chain A, Crystal Structure Of Putative Glycerophosphoryl Diester
Phosphodiesterase (Np_812074.1) From Bacteroides
Thetaiotaomicron Vpi-5482 At 1.35 A Resolution
Length = 278
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 120 LLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLD-LLPL 178
LLT + I VN+ AY YA EK T +++ + G ++ +E + LD +L
Sbjct: 111 LLTAKGKIXVNLDKAYDIFDDVYAILEKTETQNQVIXKGGQPIETVKREFGSYLDKVLYX 170
Query: 179 PHLAQALTEIEPIVGD 194
P + E E I+ D
Sbjct: 171 PVIDLGNKEAEKIITD 186
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,003,713
Number of Sequences: 62578
Number of extensions: 238475
Number of successful extensions: 1380
Number of sequences better than 100.0: 121
Number of HSP's better than 100.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 523
Number of HSP's gapped (non-prelim): 433
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)