RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14007
(198 letters)
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 122 bits (308), Expect = 3e-36
Identities = 62/128 (48%), Positives = 78/128 (60%), Gaps = 2/128 (1%)
Query: 29 DPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLI 88
+ +D+ RTPL LAA+ G LE+V+LL+ NGADVNAK + G + L A G EI +LL+
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60
Query: 89 HNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKR 148
A+VN +D G TPLH AA G VVKLLL + DVN D G TPLH A +
Sbjct: 61 EKGADVNARDKDGNTPLHLAARNGNLDVVKLLL--KHGADVNARDKDGRTPLHLAAKNGH 118
Query: 149 LTDAKLLV 156
L KLL+
Sbjct: 119 LEVVKLLL 126
Score = 120 bits (302), Expect = 3e-35
Identities = 56/117 (47%), Positives = 75/117 (64%)
Query: 5 LIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK 64
+H AA +G +VV LL+N + V+ KD+ RTPL LAA G LEIV+LL+ GADVNA+
Sbjct: 10 PLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNAR 69
Query: 65 ADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL 121
G++ L A G ++ +LL+ + A+VN +D G TPLH AA G VVKLLL
Sbjct: 70 DKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126
Score = 104 bits (262), Expect = 4e-29
Identities = 50/114 (43%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 62 NAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL 121
NA+ + G + L A S G E+ +LL+ N A+VN +D G TPLH AA G +VKLLL
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60
Query: 122 TQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
+ DVN D GNTPLH A L KLL++ GA ++ ++K+ +TPL L
Sbjct: 61 EK--GADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHL 112
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 105 bits (264), Expect = 6e-27
Identities = 63/183 (34%), Positives = 85/183 (46%), Gaps = 23/183 (12%)
Query: 14 REDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGK-----LEIVRLLISNGADVNAKADGG 68
DVV LL N + ++ N TPL + EIV+LL+ GA+VNA + G
Sbjct: 47 NIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNG 106
Query: 69 HSALQYACSK--GWKEIAELLIHNHANVNIQDVRGATPLHRAASQGI--TPVVKLLLTQR 124
+ L YA SK I E L+ N ANVNI++ G LH ++KLL+ +
Sbjct: 107 ITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKG 166
Query: 125 LDID--------------VNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKK 170
+DI+ +NI D YG TPLHYA K L+ GA ++ NK
Sbjct: 167 VDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGD 226
Query: 171 TPL 173
TPL
Sbjct: 227 TPL 229
Score = 90.1 bits (224), Expect = 2e-21
Identities = 52/165 (31%), Positives = 74/165 (44%), Gaps = 22/165 (13%)
Query: 16 DVVDFLLKNKSPVDPKDDTNRTPLILAAAA--GKLEIVRLLISNGADVNAKADGGHSALQ 73
++V LL+ + V+ D+ TPL+ A + IV L+ NGA+VN K G + L
Sbjct: 87 EIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLH 146
Query: 74 YA--CSKGWKEIAELLIHNHANVN----------------IQDVRGATPLHRAASQGITP 115
+K +I +LLI ++N I+DV G TPLH A
Sbjct: 147 LYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPE 206
Query: 116 VVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
VK LL L + N+ + YG+TPLH A KLL+ G
Sbjct: 207 FVKYLL--DLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGP 249
Score = 69.3 bits (170), Expect = 4e-14
Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 11/156 (7%)
Query: 21 LLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGW 80
++ D PL LA A +++V++L+ NGAD+N+ + L Y + +
Sbjct: 21 IIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKY 80
Query: 81 -----KEIAELLIHNHANVNIQDVRGATPLHRAASQ--GITPVVKLLLTQRLDIDVNITD 133
KEI +LL+ ANVN D G TPL A S+ +V+ LL +VNI +
Sbjct: 81 NLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNG--ANVNIKN 138
Query: 134 AYGNTPLHYA--CEEKRLTDAKLLVRCGARLDIQNK 167
+ G LH + L KLL+ G ++ +N+
Sbjct: 139 SDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNR 174
Score = 63.9 bits (156), Expect = 3e-12
Identities = 25/81 (30%), Positives = 39/81 (48%)
Query: 16 DVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYA 75
+ V++LL P++ KD TPL A E V+ L+ GA+ N G + L A
Sbjct: 173 NRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIA 232
Query: 76 CSKGWKEIAELLIHNHANVNI 96
KEI +LL++N ++
Sbjct: 233 ILNNNKEIFKLLLNNGPSIKT 253
Score = 63.1 bits (154), Expect = 6e-12
Identities = 32/127 (25%), Positives = 48/127 (37%), Gaps = 19/127 (14%)
Query: 5 LIHWAALSGRED--VVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVN 62
L+H S + D ++ L+ ++ K+ V L+S G +N
Sbjct: 144 LLHLYLESNKIDLKILKLLIDKGVDINAKNR-----------------VNYLLSYGVPIN 186
Query: 63 AKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLT 122
K G + L YA E + L+ AN N+ + G TPLH A + KLLL
Sbjct: 187 IKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLN 246
Query: 123 QRLDIDV 129
I
Sbjct: 247 NGPSIKT 253
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 92.7 bits (231), Expect = 6e-25
Identities = 39/93 (41%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H AA +G ++V LL+ D T L LAA G LEIV+LL+ +GADVNAK
Sbjct: 1 LHLAAKNGNLELVKLLLEKG--ADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKD 58
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
G++AL A G EI +LL+ + A++N++D
Sbjct: 59 KDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91
Score = 84.2 bits (209), Expect = 1e-21
Identities = 42/95 (44%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 39 LILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
L LAA G LE+V+LL+ GADVN +AL A G EI +LL+ + A+VN +D
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITD 133
G T LH AA G +VKLLL D+N+ D
Sbjct: 59 KDGNTALHLAARNGNLEIVKLLL--EHGADINLKD 91
Score = 73.4 bits (181), Expect = 1e-17
Identities = 37/95 (38%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 72 LQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNI 131
L A G E+ +LL+ A+VN+ D T LH AA G +VKLLL DVN
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGD--TDTALHLAARNGNLEIVKLLLEH--GADVNA 56
Query: 132 TDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQN 166
D GNT LH A L KLL+ GA +++++
Sbjct: 57 KDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91
Score = 67.3 bits (165), Expect = 4e-15
Identities = 27/64 (42%), Positives = 40/64 (62%)
Query: 1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
+ +H AA +G ++V LL++ + V+ KD T L LAA G LEIV+LL+ +GAD
Sbjct: 27 DTDTALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGAD 86
Query: 61 VNAK 64
+N K
Sbjct: 87 INLK 90
Score = 52.3 bits (126), Expect = 2e-09
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 105 LHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDI 164
LH AA G +VKLLL + D+++ TD T LH A L KLL+ GA ++
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTD----TALHLAARNGNLEIVKLLLEHGADVNA 56
Query: 165 QNKEKKTPL 173
++K+ T L
Sbjct: 57 KDKDGNTAL 65
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 79.2 bits (195), Expect = 2e-17
Identities = 46/175 (26%), Positives = 84/175 (48%), Gaps = 9/175 (5%)
Query: 3 RLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVN 62
+ +H+A G + + L + + V+ +DD P+ +A +I++LL+ GA N
Sbjct: 125 KTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN 184
Query: 63 AKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLT 122
K + G S L A G +LLI + ++ + G TPLH A + ++LL+
Sbjct: 185 VKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRS-AIELLIN 243
Query: 123 QRLDIDVNITDAYGNTPLHYACE---EKRLTDAKLLVRCGARLDIQNKEKKTPLD 174
+N D G+TPLH+A + + D +L+ A + I++ + + P+D
Sbjct: 244 NA---SINDQDIDGSTPLHHAINPPCDIDIID--ILLYHKADISIKDNKGENPID 293
Score = 72.3 bits (177), Expect = 4e-15
Identities = 55/188 (29%), Positives = 81/188 (43%), Gaps = 25/188 (13%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD-------- 60
A SG +V+ +K+ + ++ + PL+ A G +I++LLI NG D
Sbjct: 42 AIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPC 101
Query: 61 ---------------VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPL 105
VN K + L YA KG E ++L A+VNI+D G P+
Sbjct: 102 IEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPI 161
Query: 106 HRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQ 165
H A ++KLLL + +V D G +PLH A E KLL+ G + +
Sbjct: 162 HIAIKHNFFDIIKLLLEKGAYANVK--DNNGESPLHNAAEYGDYACIKLLIDHGNHIMNK 219
Query: 166 NKEKKTPL 173
K TPL
Sbjct: 220 CKNGFTPL 227
Score = 70.8 bits (173), Expect = 1e-14
Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 4/159 (2%)
Query: 15 EDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQY 74
+D++ +L V+ KD +T L A G LE +++L GADVN + D G +
Sbjct: 104 KDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHI 163
Query: 75 ACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDA 134
A + +I +LL+ A N++D G +PLH AA G +KLL+ I +
Sbjct: 164 AIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKN- 222
Query: 135 YGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
G TPLH A R + +LL+ A ++ Q+ + TPL
Sbjct: 223 -GFTPLHNAIIHNR-SAIELLIN-NASINDQDIDGSTPL 258
Score = 45.3 bits (107), Expect = 7e-06
Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 22/151 (14%)
Query: 45 AGKLEIVRLLISNGAD-VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGAT 103
+G +E + +I N + +N D + L A G +I EL I + A++N + +
Sbjct: 11 SGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPH 70
Query: 104 PLHRAASQGITPVVKLLLTQRLD---------------------IDVNITDAYGNTPLHY 142
PL A G ++KLL+ +D IDVNI DA T LHY
Sbjct: 71 PLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHY 130
Query: 143 ACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
A ++ L K+L GA ++I++ P+
Sbjct: 131 AIKKGDLESIKMLFEYGADVNIEDDNGCYPI 161
Score = 27.6 bits (61), Expect = 5.3
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 16 DVVDFLLKNKSPVDPKDDTNRTPLILAAA-AGKLEIVRLLISNGADVN 62
D++D LL +K+ + KD+ P+ A K +++ +I+N +
Sbjct: 269 DIIDILLYHKADISIKDNKGENPIDTAFKYINKDPVIKDIIANAVLIK 316
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 75.6 bits (185), Expect = 6e-17
Identities = 55/155 (35%), Positives = 77/155 (49%), Gaps = 10/155 (6%)
Query: 21 LLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKG- 79
L + +D R PL AA+ G +IV+LL+++GADVNAK G + L A G
Sbjct: 59 KLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGN 118
Query: 80 ----WKEIAELLIHNHA---NVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNIT 132
E+A+LL+ A N++D G TPLH AA G +V+LLL D N
Sbjct: 119 PPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADP--NSR 176
Query: 133 DAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNK 167
++YG T L A + R+ KLL+ G L +
Sbjct: 177 NSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKF 211
Score = 69.5 bits (169), Expect = 1e-14
Identities = 46/130 (35%), Positives = 67/130 (51%), Gaps = 8/130 (6%)
Query: 1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKL-----EIVRLLI 55
+ RL +H AA G + +V LL + + V+ KD TPL LAA G E+ +LL+
Sbjct: 72 DGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLL 131
Query: 56 SNGA---DVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQG 112
GA N + + G++ L +A G +I ELL+ A+ N ++ G T L AA G
Sbjct: 132 EAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNG 191
Query: 113 ITPVVKLLLT 122
+VKLLL
Sbjct: 192 RIELVKLLLD 201
Score = 57.9 bits (139), Expect = 2e-10
Identities = 55/151 (36%), Positives = 71/151 (47%), Gaps = 7/151 (4%)
Query: 31 KDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHN 90
K L L AA E++ LI + A+ G L A SKG +I +LL+ +
Sbjct: 37 KKLNLYLELALLPAASLSELLLKLI-VDRHLAARDLDGRLPLHSAASKGDDKIVKLLLAS 95
Query: 91 HANVNIQDVRGATPLHRAASQG-----ITPVVKLLLTQRLDIDVNIT-DAYGNTPLHYAC 144
A+VN +D G TPLH AA G V KLLL D+DVN D GNTPLH+A
Sbjct: 96 GADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAA 155
Query: 145 EEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
+LL+ GA + +N T LD
Sbjct: 156 LNGDADIVELLLEAGADPNSRNSYGVTALDP 186
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 77.2 bits (190), Expect = 9e-17
Identities = 50/161 (31%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 16 DVVDFLLKNKSPVDPKD-DTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQY 74
++ LL + ++ KD T L A + LL+S GA+VN +S L +
Sbjct: 148 EITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHH 207
Query: 75 ACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGIT-PVVKLLLTQRLDIDVNITD 133
A K I +L+ N A+ + +D G TPLH + ++KLLL +DVN
Sbjct: 208 AVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEH--GVDVNAKS 265
Query: 134 A-YGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
G T LH + + +R KLL+ GA ++ N K TPL
Sbjct: 266 YILGLTALHSSIKSERKL--KLLLEYGADINSLNSYKLTPL 304
Score = 61.0 bits (148), Expect = 3e-11
Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H+A + + + + LL + V+ D TN +PL A IV +L+ NGA +A+
Sbjct: 172 LHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARD 231
Query: 66 DGGHSALQYACSKGWK-EIAELLIHNHANVNIQD-VRGATPLHRAASQGITPVVKLLLTQ 123
G++ L + +I +LL+ + +VN + + G T LH + +KLLL
Sbjct: 232 KCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIKS--ERKLKLLL-- 287
Query: 124 RLDIDVNITDAYGNTPLHYA 143
D+N ++Y TPL A
Sbjct: 288 EYGADINSLNSYKLTPLSSA 307
Score = 42.9 bits (101), Expect = 5e-05
Identities = 44/167 (26%), Positives = 68/167 (40%), Gaps = 32/167 (19%)
Query: 38 PLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSK----GWKEIAELLIH---- 89
PL A A L++V+ L++ G +VN + L C + G KE+ +
Sbjct: 40 PLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVF 99
Query: 90 ----------NHANVNI------------QDVRGATPLHRAASQGI-TPVVKLLLTQRLD 126
N+ NV I Q + ++ I + KLLL+ D
Sbjct: 100 YTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGAD 159
Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
I++ GNT LHYA E K +LL+ GA ++I +K +PL
Sbjct: 160 INM-KDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPL 205
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 72.0 bits (176), Expect = 6e-15
Identities = 53/162 (32%), Positives = 80/162 (49%), Gaps = 9/162 (5%)
Query: 17 VVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYAC 76
+ + LL+ + V+ KD TP+ AA G ++V LL+S GADVN A S L+ A
Sbjct: 160 IAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAV 219
Query: 77 SKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYG 136
+ + +I N +N+N D+ L +A + LL VN D
Sbjct: 220 DSKNIDTIKAIIDNRSNINKNDLS----LLKAIRN--EDLETSLLLYDAGFSVNSIDDCK 273
Query: 137 NTPLHYACEEKRLTD--AKLLVRCGARLDIQNKEKKTPLDLL 176
NTPLH+A + L+ KLL R GA ++ +N + +TPL L+
Sbjct: 274 NTPLHHASQAPSLSRLVPKLLER-GADVNAKNIKGETPLYLM 314
Score = 62.8 bits (152), Expect = 1e-11
Identities = 54/156 (34%), Positives = 77/156 (49%), Gaps = 5/156 (3%)
Query: 21 LLKNKSPVDPKDDTNRTPLILAAAAG-KLEIVRLLISNGADVNAKADGGHSALQYACS-K 78
LL+ + V+ K+ TPL L A G E +R LI GADVNA + L A +
Sbjct: 293 LLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLD 352
Query: 79 GWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNT 138
K+I L+ ANVN +D TP+H AA + ++ LL DI+ ++ G T
Sbjct: 353 RNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEA-LSQKIG-T 410
Query: 139 PLHYA-CEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
LH+A C K L+ GA ++ +NK+ TPL
Sbjct: 411 ALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPL 446
Score = 56.6 bits (136), Expect = 1e-09
Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 9/172 (5%)
Query: 5 LIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK 64
++ A S D + ++ N+S ++ D L+ A LE LL G VN+
Sbjct: 214 VLECAVDSKNIDTIKAIIDNRSNINKND----LSLLKAIRNEDLETSLLLYDAGFSVNSI 269
Query: 65 ADGGHSALQYAC-SKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGI-TPVVKLLLT 122
D ++ L +A + + L+ A+VN ++++G TPL+ A G T ++ L+
Sbjct: 270 DDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIM 329
Query: 123 QRLDIDVNITDAYGNTPLHYACEEKRLTDAKL-LVRCGARLDIQNKEKKTPL 173
L DVN D TPLH A R D + L+ GA ++ ++ KTP+
Sbjct: 330 --LGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPI 379
Score = 55.5 bits (133), Expect = 3e-09
Identities = 50/150 (33%), Positives = 71/150 (47%), Gaps = 7/150 (4%)
Query: 28 VDPKDDTNRTPLILAAAAGKL-EIVRLLISNGADVNAKADGGHSALQYACSKGW-KEIAE 85
V+ DD TPL A+ A L +V L+ GADVNAK G + L G+ E
Sbjct: 266 VNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIR 325
Query: 86 LLIHNHANVNIQDVRGATPLHRAAS--QGITPVVKLLLTQRLDIDVNITDAYGNTPLHYA 143
LI A+VN D TPLH+A++ + V+ LL L +VN D TP+HYA
Sbjct: 326 TLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLL---ELGANVNARDYCDKTPIHYA 382
Query: 144 CEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
+ L+ GA ++ +++ T L
Sbjct: 383 AVRNNVVIINTLLDYGADIEALSQKIGTAL 412
Score = 53.9 bits (129), Expect = 9e-09
Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 18/165 (10%)
Query: 6 IHWAALSGR-EDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK 64
+H A+ R +D+V LL+ + V+ +D ++TP+ AA + I+ L+ GAD+ A
Sbjct: 345 LHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEAL 404
Query: 65 ADGGHSALQYA-CSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITP-VVKLLLT 122
+ +AL +A C + LI ANVN ++ +TPLH A + V+++LL
Sbjct: 405 SQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLD 464
Query: 123 QRLDID-VNITDAYG-----------NTPLHYACEEKRLTDAKLL 155
D++ +NI + Y N LHY E L D+++L
Sbjct: 465 NGADVNAINIQNQYPLLIALEYHGIVNILLHYGAE---LRDSRVL 506
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 70.4 bits (173), Expect = 2e-14
Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 9/170 (5%)
Query: 14 REDVVDFLLKNKSPVDPKDDTNRTPLIL-AAAAGKLEIVRLLISNGADVNAKADGGHSAL 72
+D+V LL+ + V+ + TPL L A L++++LLI GADVNAK G + L
Sbjct: 62 VKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPL 121
Query: 73 Q-YACSKGWKE-IAELLIHNHANVNIQDVRGATPLH-RAASQGITP-VVKLLLTQRLDID 128
Y + LL+ A+VN D+ G TPL S+ +++LL+ D
Sbjct: 122 HVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLI--DAGAD 179
Query: 129 VNITDAYGNTPLHYACEEKRLTDAKL--LVRCGARLDIQNKEKKTPLDLL 176
V D + LH+ + + + L+R G + TPL +
Sbjct: 180 VYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSM 229
Score = 68.5 bits (168), Expect = 7e-14
Identities = 52/145 (35%), Positives = 73/145 (50%), Gaps = 12/145 (8%)
Query: 40 ILAAAAGKLEIVRLLISNGADVNAKADGG----HSALQYACSKGWKEIAELLIHNHANVN 95
+L A+ +E VR L++ GADVN + + G H L Y+ K K+I LL+ A+VN
Sbjct: 19 LLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKV-KDIVRLLLEAGADVN 77
Query: 96 IQDVRGATPLHRAASQGIT-PVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAK- 153
+ G TPLH T V+KLL+ + DVN D G TPLH + K
Sbjct: 78 APERCGFTPLHLYLYNATTLDVIKLLI--KAGADVNAKDKVGRTPLHVYLSGFN-INPKV 134
Query: 154 --LLVRCGARLDIQNKEKKTPLDLL 176
LL+R GA ++ + TPL +L
Sbjct: 135 IRLLLRKGADVNALDLYGMTPLAVL 159
Score = 65.0 bits (159), Expect = 1e-12
Identities = 47/147 (31%), Positives = 68/147 (46%), Gaps = 10/147 (6%)
Query: 4 LLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPL--ILAAAAGKLEIVRLLISNGADV 61
L ++ + + V+ LL+ + V+ D TPL +L + +E++RLLI GADV
Sbjct: 121 LHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADV 180
Query: 62 NAKADGGHSALQYAC--SKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITP---V 116
A D S L + K I LI + D+ G TPLH A+ V
Sbjct: 181 YAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLV 240
Query: 117 VKLLLTQRLDIDVNITDAYGNTPLHYA 143
+ LL+ I +N + YG TPLHYA
Sbjct: 241 LPLLIA---GISINARNRYGQTPLHYA 264
Score = 32.7 bits (75), Expect = 0.092
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 14 REDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQ 73
R V+ L+ S ++ ++ +TPL AA R LI+ GAD+NA + G++ L
Sbjct: 237 RSLVLPLLIAGIS-INARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPL- 294
Query: 74 YACSKGWKEIAELLIHNHA 92
+ ++ +N+
Sbjct: 295 ----------SLMVRNNNG 303
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 66.0 bits (161), Expect = 6e-13
Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 5/171 (2%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
A +G +++ LLK K D D RTPL +AA+ G + V +L+ + +V+ + G
Sbjct: 532 VASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANG 591
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
++AL A S +I +L H + + L AA + +K LL Q L++D
Sbjct: 592 NTALWNAISAKHHKIFRILYHFASISDPH--AAGDLLCTAAKRNDLTAMKELLKQGLNVD 649
Query: 129 VNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQN-KEKKTPLDLLPL 178
D G T L A E + +LL+ GA +D N + +P +L L
Sbjct: 650 SE--DHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELREL 698
Score = 50.6 bits (121), Expect = 1e-07
Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 3/148 (2%)
Query: 3 RLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVN 62
R +H AA G ED V LLK+ V +D T L A +A +I R+L + +
Sbjct: 559 RTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISD 618
Query: 63 AKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLT 122
A G L A + + L+ NV+ +D +GAT L A ++ +V+LL+
Sbjct: 619 PHAAG--DLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIM 676
Query: 123 QRLDID-VNITDAYGNTPLHYACEEKRL 149
D+D N D + T L +++ L
Sbjct: 677 NGADVDKANTDDDFSPTELRELLQKREL 704
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 60.8 bits (147), Expect = 3e-11
Identities = 59/179 (32%), Positives = 85/179 (47%), Gaps = 13/179 (7%)
Query: 6 IHWAALSGREDVVDFLLK-NKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK 64
+H A G V+ LL K D TPL LA KL+I++LLI+ GAD +
Sbjct: 72 LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIP 131
Query: 65 ADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQR 124
S L A G + ELLI + A ++I+D G TPL A ++G + K+L
Sbjct: 132 NTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKML---- 187
Query: 125 LDIDVNITDAYGNTP----LHYACEEKRLTDAKLLVRCGARLDIQ---NKEKKTPLDLL 176
LD NI D +G L YA E ++ +L ++ GA +I E+ T LD++
Sbjct: 188 LDSGANI-DYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTILDMI 245
Score = 56.9 bits (137), Expect = 7e-10
Identities = 48/144 (33%), Positives = 71/144 (49%), Gaps = 7/144 (4%)
Query: 35 NRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHA-- 92
++ L A G+L+I R L+ G + N + G S ++ A E +LL+ + A
Sbjct: 2 DQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIP 61
Query: 93 NVNIQDVRGATPLHRAASQG-ITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTD 151
+V D+ + LH A +G + V +LL + DV D G TPLH A K+L
Sbjct: 62 DVKYPDIE--SELHDAVEEGDVKAVEELLDLGKFADDVFYKD--GMTPLHLATILKKLDI 117
Query: 152 AKLLVRCGARLDIQNKEKKTPLDL 175
KLL+ GA DI N +K +PL L
Sbjct: 118 MKLLIARGADPDIPNTDKFSPLHL 141
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 53.4 bits (129), Expect = 3e-10
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 2 ERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLI 55
R +H AA+SGR ++V +LL+ ++ D+ T L +AA G LE+++LL+
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 49.5 bits (119), Expect = 7e-09
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 35 NRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLI 88
RT L AA +G+LE+V+ L+ G D+N + G++AL A G E+ +LL+
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 49.2 bits (118), Expect = 1e-08
Identities = 21/54 (38%), Positives = 28/54 (51%)
Query: 68 GHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL 121
G +AL A G E+ + L+ ++N D G T LH AA G V+KLLL
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 44.2 bits (105), Expect = 8e-07
Identities = 25/54 (46%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 103 TPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLV 156
T LH+AA G +VK LL +D+N TD GNT LH A E L KLL+
Sbjct: 3 TALHKAAISGRLELVKYLL--EKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 27.2 bits (61), Expect = 1.1
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 136 GNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
G T LH A RL K L+ G ++ +++ T L +
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHI 40
>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional.
Length = 489
Score = 56.4 bits (136), Expect = 1e-09
Identities = 54/179 (30%), Positives = 83/179 (46%), Gaps = 21/179 (11%)
Query: 16 DVVDFLLKNKSPVDPKDDTNRTPL--ILAAAA---GKLEIVRLLISNGADVNAKADGGHS 70
D+V + + V+ D+ TPL IL+ L+IV++LI NGAD+N K G +
Sbjct: 52 DIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGET 111
Query: 71 ALQYACSKGW---KEIAELLIHNHANVNIQDVRGATPL--HRAASQGI-TPVVKLLLTQR 124
L S G+ EI +I N A+ + D G T L + ++ I ++KLLL +
Sbjct: 112 PLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKG 171
Query: 125 LDIDVNITDAYGNTPLHYACEEKRLTD------AKLLVRCGARLDIQNKE-KKTPLDLL 176
+DI+ + LH C K D KL V G ++ +NK KK ++ L
Sbjct: 172 VDINT-HNNKEKYDTLH--CYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYL 227
Score = 46.4 bits (110), Expect = 3e-06
Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 10/138 (7%)
Query: 47 KLEIVRLLISNGADVNAKADGGHSALQYACS--KGWK---EIAELLIHNHANVNIQDVRG 101
+IV+L I+ GA+VN + + L S K +K +I ++LI N A++N ++ G
Sbjct: 50 STDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDG 109
Query: 102 ATPLHRAASQG-ITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTD---AKLLVR 157
TPL+ S G I + LL D + D G T L + D KLL+
Sbjct: 110 ETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLE 169
Query: 158 CGARLD-IQNKEKKTPLD 174
G ++ NKEK L
Sbjct: 170 KGVDINTHNNKEKYDTLH 187
Score = 33.3 bits (76), Expect = 0.069
Identities = 38/179 (21%), Positives = 75/179 (41%), Gaps = 27/179 (15%)
Query: 5 LIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAG---KLEIVRLLISNGADV 61
L+ ++ E ++ F+++N + D T L + + +EI++LL+ G D+
Sbjct: 116 LLSNGYINNLEILL-FMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDI 174
Query: 62 NA-----KADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPV 116
N K D H +Y + +I +L + N +N ++ H+ + + +
Sbjct: 175 NTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKEN-----KSHK--KKFMEYL 227
Query: 117 VKLLLTQR------LD-----IDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDI 164
LL + LD ID+N D G PL+Y+ + L++ G ++I
Sbjct: 228 NSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINI 286
Score = 27.9 bits (62), Expect = 4.2
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 14 REDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQ 73
+++++DF+ ++ D+ PL + + +I L+ G D+N + G++ L
Sbjct: 238 KKNILDFIFSYID-INQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLF 296
Query: 74 YACSKGWKEIAELLIHNHANVNI 96
A K I +++ N N
Sbjct: 297 TAFENESKFIFNSILNKKPNKNT 319
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 51.2 bits (123), Expect = 2e-09
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 86 LLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYA 143
LL H ++N D G TPLH AA G +V+ LL +D+ N+ D+ G T L A
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDL--NLRDSDGLTALDLA 56
Score = 43.9 bits (104), Expect = 9e-07
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
L + ID+N TD GNTPLH A + L + L++ G L++++ + T LDL
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDL 55
Score = 41.2 bits (97), Expect = 9e-06
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 21 LLKNKSPVDPKDDTNR-TPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYA 75
LL++ D N TPL LAA G LE+V+ L+ G D+N + G +AL A
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 39.6 bits (93), Expect = 3e-05
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 54 LISNG-ADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRA 108
L+ +G D+NA G++ L A G E+ + L+ ++N++D G T L A
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 27.3 bits (61), Expect = 0.94
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 5 LIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILA 42
+H AA G ++V +LLK ++ +D T L LA
Sbjct: 19 PLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 54.3 bits (131), Expect = 6e-09
Identities = 53/212 (25%), Positives = 74/212 (34%), Gaps = 57/212 (26%)
Query: 5 LIHWAALSGREDVVDFLLKNKSPVDPKDDTNR--------------TPLILAAAAGKLEI 50
L+H A D V+ +L + K T L LAA EI
Sbjct: 85 LLH-AISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEI 143
Query: 51 VRLLISNGADVNAKADGG------------HSALQ---YACSKGWKEIAELLIHNHANVN 95
V+LL+ GA V A+A G H AC I LL + A++
Sbjct: 144 VKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSP-SIVALLSEDPADIL 202
Query: 96 IQDVRGATPLH------------RAASQGITPVVKLLL-----TQRLDIDVNITDAYGNT 138
D G T LH S + LL ++ L++ I + G T
Sbjct: 203 TADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEV---ILNHQGLT 259
Query: 139 PLHYACEEKRLTDAKLLVRCGARLDIQNKEKK 170
PL A +E R+ +L L I+ K+KK
Sbjct: 260 PLKLAAKEGRIVLFRLK------LAIKYKQKK 285
>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional.
Length = 209
Score = 50.6 bits (121), Expect = 6e-08
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 28 VDPKDDTNRTPLI--LAAAAGKLEIVRLLISNGADVNAKADG-GHSALQYACSKGWK--- 81
V+ +D TP+ L +EI++ LI NGADVN K SAL + S
Sbjct: 44 VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEP 103
Query: 82 EIAELLIHNHANVNIQDVRGATPLHR 107
EI ++LI + +++ +D G LH
Sbjct: 104 EILKILIDSGSSITEEDEDGKNLLHM 129
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 50.3 bits (120), Expect = 1e-07
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 4/123 (3%)
Query: 3 RLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILA----AAAGKLEIVRLLISNG 58
R+ H AL E+ N + + D L + AA+G R+L++ G
Sbjct: 46 RIDTHLEALEATENKDATPDHNLTTEEVIDPVVAHMLTVELCQLAASGDAVGARILLTGG 105
Query: 59 ADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVK 118
AD N + G + L AC+ G ++ +L+ A+ + D G TPL A G VV+
Sbjct: 106 ADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQ 165
Query: 119 LLL 121
LL
Sbjct: 166 LLS 168
Score = 46.8 bits (111), Expect = 2e-06
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 84 AELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYA 143
A +L+ A+ N +D G TPLH A + G VV++LL D + D G TPL A
Sbjct: 98 ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLL--EFGADPTLLDKDGKTPLELA 155
Query: 144 CEEKRLTDAKLLVRC 158
E +LL R
Sbjct: 156 EENGFREVVQLLSRH 170
Score = 45.7 bits (108), Expect = 7e-06
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 106 HRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQ 165
AAS G ++LLT D N D G TPLH AC + ++L+ GA +
Sbjct: 88 QLAAS-GDAVGARILLTG--GADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLL 144
Query: 166 NKEKKTPLDL 175
+K+ KTPL+L
Sbjct: 145 DKDGKTPLEL 154
Score = 35.3 bits (81), Expect = 0.016
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNG-- 58
+ R +H A +G VV LL+ + D +TPL LA G E+V+LL +
Sbjct: 114 DGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQC 173
Query: 59 ---ADVNAKAD 66
NAK D
Sbjct: 174 HFELGANAKPD 184
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to
24 repeated units, and it mediates most of the
protein's binding activities. Repeats 13-24 are
especially active, with known sites of interaction for
the Na/K ATPase, Cl/HCO(3) anion exchanger,
voltage-gated sodium channel, clathrin heavy chain and
L1 family cell adhesion molecules. The ANK repeats are
found to form a contiguous spiral stack such that ion
transporters like the anion exchanger associate in a
large central cavity formed by the ANK repeat spiral,
while clathrin and cell adhesion molecules associate
with specific regions outside this cavity.
Length = 33
Score = 43.7 bits (104), Expect = 8e-07
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 36 RTPLILAAAAGKLEIVRLLISNGADVNAK 64
TPL LAA G LE+V+LL+ GADVNA+
Sbjct: 3 NTPLHLAARNGHLEVVKLLLEAGADVNAR 31
Score = 37.1 bits (87), Expect = 2e-04
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 68 GHSALQYACSKGWKEIAELLIHNHANVNIQD 98
G++ L A G E+ +LL+ A+VN +D
Sbjct: 2 GNTPLHLAARNGHLEVVKLLLEAGADVNARD 32
Score = 35.6 bits (83), Expect = 8e-04
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 135 YGNTPLHYACEEKRLTDAKLLVRCGARLDIQNK 167
GNTPLH A L KLL+ GA ++ ++K
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33
Score = 32.5 bits (75), Expect = 0.010
Identities = 18/33 (54%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 101 GATPLHRAASQGITPVVKLLLTQRLDIDVNITD 133
G TPLH AA G VVKLLL DVN D
Sbjct: 2 GNTPLHLAARNGHLEVVKLLL--EAGADVNARD 32
Score = 30.6 bits (70), Expect = 0.040
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDD 33
+H AA +G +VV LL+ + V+ +D
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNARDK 33
>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional.
Length = 446
Score = 46.2 bits (109), Expect = 3e-06
Identities = 42/174 (24%), Positives = 71/174 (40%), Gaps = 3/174 (1%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGK--LEIVRLLISNGADVNA 63
+H A+ +V LL + + + D ++TPL + +E + LL+ GA +N
Sbjct: 76 LHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINN 135
Query: 64 KADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQ 123
D AC+ + + + ++ I D G +HR +
Sbjct: 136 SVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMM 195
Query: 124 RLDIDVNITDAYGNTPLHYACEEK-RLTDAKLLVRCGARLDIQNKEKKTPLDLL 176
+L I + D GNTPLH C + + D L+ ++ QNK +PL LL
Sbjct: 196 KLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLPSTDVNKQNKFGDSPLTLL 249
>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional.
Length = 284
Score = 45.4 bits (107), Expect = 5e-06
Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Query: 64 KAD-GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLT 122
KAD GHSAL YA + + L++ A N+ + PLH+AA+ T +VK+LL
Sbjct: 25 KADVHGHSALYYAIADNNVRLVCTLLNAGALKNL--LENEFPLHQAATLEDTKIVKILLF 82
Query: 123 QRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARL 162
+D D D GNT L+YA + + KL V+ RL
Sbjct: 83 SGMD-DSQFDDK-GNTALYYAVDSGNMQTVKLFVKKNWRL 120
Score = 31.2 bits (70), Expect = 0.30
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 35 NRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLI 88
N PL AA +IV++L+ +G D + D G++AL YA G + +L +
Sbjct: 61 NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFV 114
>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional.
Length = 494
Score = 41.7 bits (98), Expect = 1e-04
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 47 KLEIVRLLISNGADVNAKA--DGGHSAL---QYACSKGWKEIAELLIHNHANVNIQDVRG 101
K++IV+LLI NGADVN K + A+ + S K+I +LL+ A++N++ G
Sbjct: 49 KIKIVKLLIDNGADVNYKGYIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNG 108
Query: 102 ATPL 105
+P+
Sbjct: 109 VSPI 112
Score = 37.0 bits (86), Expect = 0.004
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 14/103 (13%)
Query: 47 KLEIVRLLISNGADVNAKADGGHSALQYACSKGWK-EIAELLIHNHANVNIQDVRG--AT 103
+ L+ G DVN + G L Y K K +I +LLI N A+VN +G T
Sbjct: 15 DKNALEFLLRTGFDVNEEYRGNSILLLYLKRKDVKIKIVKLLIDNGADVN---YKGYIET 71
Query: 104 PL------HRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPL 140
PL S I +VKLLL + D+N+ G +P+
Sbjct: 72 PLCAVLRNREITSNKIKKIVKLLL--KFGADINLKTFNGVSPI 112
Score = 30.9 bits (70), Expect = 0.49
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 17 VVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYAC 76
V++F+LK ++ KD PL+++A E L+ G D+ + G + L YA
Sbjct: 239 VLNFILKYIK-INKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAI 297
Query: 77 SKG 79
G
Sbjct: 298 KHG 300
Score = 28.2 bits (63), Expect = 2.8
Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 20/144 (13%)
Query: 14 REDVVDFLLKNKSPVDPKDDTNR---TPLIL----AAAAGKLEIVRLLISNGADVNAKAD 66
++DV+ LL V+ + T+ TP+ + +++++ LI G ++ +
Sbjct: 159 KKDVIKILLS--FGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNN 216
Query: 67 GGHSALQY------ACSKGWKEIAEL-LIHNHANVNIQDVRGATPLHRAASQGITPVVKL 119
G S L+ SK KE L I + +N +D +G PL +A
Sbjct: 217 GSESVLESFLDNNKILSK--KEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNY 274
Query: 120 LLTQRLDIDVNITDAYGNTPLHYA 143
LL +L D+ G+T L YA
Sbjct: 275 LL--KLGDDIYNVSKDGDTVLTYA 296
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 36.8 bits (86), Expect = 3e-04
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 35 NRTPLILAAAAGKLEIVRLLISNGADVNA 63
RTPL LAA G LE+V+LL+ GAD+NA
Sbjct: 2 GRTPLHLAAENGNLEVVKLLLDKGADINA 30
Score = 28.3 bits (64), Expect = 0.30
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 135 YGNTPLHYACEEKRLTDAKLLVRCGARLDI 164
G TPLH A E L KLL+ GA ++
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGADINA 30
Score = 27.2 bits (61), Expect = 0.67
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 68 GHSALQYACSKGWKEIAELLIHNHANVNI 96
G + L A G E+ +LL+ A++N
Sbjct: 2 GRTPLHLAAENGNLEVVKLLLDKGADINA 30
Score = 26.0 bits (58), Expect = 1.7
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVD 29
+H AA +G +VV LL + ++
Sbjct: 6 LHLAAENGNLEVVKLLLDKGADIN 29
Score = 24.5 bits (54), Expect = 5.5
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 100 RGATPLHRAASQGITPVVKLLLTQRLDIDV 129
G TPLH AA G VVKLLL + DI+
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGADINA 30
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to
24 repeated units, and it mediates most of the
protein's binding activities.
Length = 30
Score = 36.5 bits (85), Expect = 3e-04
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 35 NRTPLILAAAAGKLEIVRLLISNGADVNA 63
TPL LAA G LE+V+LL+ +GAD+NA
Sbjct: 2 GNTPLHLAARNGNLELVKLLLEHGADINA 30
Score = 33.0 bits (76), Expect = 0.006
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 135 YGNTPLHYACEEKRLTDAKLLVRCGARLDI 164
GNTPLH A L KLL+ GA ++
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGADINA 30
Score = 31.5 bits (72), Expect = 0.018
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 68 GHSALQYACSKGWKEIAELLIHNHANVNI 96
G++ L A G E+ +LL+ + A++N
Sbjct: 2 GNTPLHLAARNGNLELVKLLLEHGADINA 30
Score = 28.4 bits (64), Expect = 0.22
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 101 GATPLHRAASQGITPVVKLLLTQRLDIDV 129
G TPLH AA G +VKLLL DI+
Sbjct: 2 GNTPLHLAARNGNLELVKLLLEHGADINA 30
Score = 28.4 bits (64), Expect = 0.27
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 1 NERLLIHWAALSGREDVVDFLLKNKSPVD 29
+ +H AA +G ++V LL++ + ++
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGADIN 29
>gnl|CDD|165157 PHA02795, PHA02795, ankyrin-like protein; Provisional.
Length = 437
Score = 36.5 bits (84), Expect = 0.006
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Query: 48 LEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHR 107
LEI +L I D+N GG + L A G+ ++ L+ N ANVN G T L
Sbjct: 201 LEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDV 260
Query: 108 AASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYAC 144
A +G + R + + I + PL C
Sbjct: 261 AVDRGS-------VIARRETHLKILEILLREPLSIDC 290
Score = 35.4 bits (81), Expect = 0.012
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 28 VDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKG 79
++ D RT L A AG +++V L+ NGA+VNA G++ L A +G
Sbjct: 214 INQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRG 265
>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional.
Length = 300
Score = 33.8 bits (77), Expect = 0.041
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 16 DVVDFLLKN----KSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG--- 68
D++D +LK ++P +++ PLI A + +LLI GADVN A+
Sbjct: 47 DIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKIT 106
Query: 69 --HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRA 108
+ ++ + C K E+L+ A++NIQ TP+ A
Sbjct: 107 PLYISVLHGCLK----CLEILLSYGADINIQTNDMVTPIELA 144
>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional.
Length = 154
Score = 32.9 bits (75), Expect = 0.044
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 86 LLIHNHANVNIQD-VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYAC 144
LL+ A++N ++ V G TPLH A + L Q +++ I + TP + AC
Sbjct: 76 LLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQP-GVNMEILNYAFKTPYYVAC 134
Query: 145 EEKRLTDAKLLVRCGARLDI 164
E +L GA+ +
Sbjct: 135 ERHDAKMMNILRAKGAQCKV 154
>gnl|CDD|165098 PHA02730, PHA02730, ankyrin-like protein; Provisional.
Length = 672
Score = 31.5 bits (71), Expect = 0.27
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 16 DVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
DV D L K +D D+ N+T L A ++ R L+ GA VN +
Sbjct: 443 DVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTS 492
>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional.
Length = 661
Score = 30.7 bits (69), Expect = 0.52
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 93 NVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKR 148
++N+ D RG T LH+A +V LLL DVNI G T + A E R
Sbjct: 444 DINMIDKRGETLLHKAVRYNKQSLVSLLLES--GSDVNIRSNNGYTCIAIAINESR 497
Score = 27.3 bits (60), Expect = 6.3
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 32 DDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSK 78
D T L A K +V LL+ +G+DVN +++ G++ + A ++
Sbjct: 449 DKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINE 495
>gnl|CDD|235584 PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 395
Score = 30.2 bits (69), Expect = 0.68
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 51 VRLLISNGADVNAK----ADGGHSALQYACSKGWKE 82
VR+ + +G + + ADG HSAL+ A W++
Sbjct: 146 VRVTLDDGETLTGRLLVAADGSHSALREALGIDWQQ 181
>gnl|CDD|165155 PHA02792, PHA02792, ankyrin-like protein; Provisional.
Length = 631
Score = 29.9 bits (67), Expect = 0.96
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 17 VVDFLLKNKSPVDPKDDT--NRTPLILAAAAGKLE---IVRLLISNGADVNAKADGGHSA 71
VV+++LKN + V DD N PL + + + I++L D+N G S
Sbjct: 354 VVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSI 413
Query: 72 LQYACSKGWKEIAELLIHNHANVNIQDVRGAT 103
L Y + E LI N A++NI G+T
Sbjct: 414 LYYCIESHSVSLVEWLIDNGADINITTKYGST 445
>gnl|CDD|227604 COG5279, CYK3, Uncharacterized protein involved in cytokinesis,
contains TGc (transglutaminase/protease-like) domain
[Cell division and chromosome partitioning].
Length = 521
Score = 29.9 bits (67), Expect = 0.99
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 97 QDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEK 147
+R H A G + K L L I I + + +P++Y +
Sbjct: 199 AQMRSVLINHEAVCTGYAELFKELC-NALGIPCEIIEGFLKSPIYYTRDIN 248
>gnl|CDD|222925 PHA02743, PHA02743, Viral ankyrin protein; Provisional.
Length = 166
Score = 27.9 bits (62), Expect = 2.5
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 41 LAAAAGKLEIVRLLISNGADVNAKADG-GHSALQYACSKGWKEIAELL 87
A A K+E+ L++ GAD+NA+ G G++ L A S E+AE L
Sbjct: 69 RANAVMKIEL---LVNMGADINARELGTGNTLLHIAASTKNYELAEWL 113
>gnl|CDD|211402 cd11526, SYLF_FYVE, The SYLF domain (also called DUF500), a novel
lipid-binding module, of FYVE zinc finger domain
containing proteins. This subfamily is composed of
uncharacterized proteins from plants and stramenopiles
containing a FYVE zinc finger domain followed by a SYLF
domain (also called DUF500). The SYLF domain of the
related protein, SH3YL1, binds phosphoinositides with
high affinity, while the N-terminal SYLF domains of both
Ysc84p and Lsb3p have been shown to bind and bundle
actin filaments, as well as bind liposomes with high
affinity.
Length = 201
Score = 28.0 bits (63), Expect = 3.1
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 10/76 (13%)
Query: 8 WAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAA----AAGKLEIVRLLISNGADVNA 63
W A G E + DF++ ++ K R + L A A G L AD+ A
Sbjct: 79 WGAQVGGE-LTDFVIVLRTRSAVKAFCGRGQVSLGAELSVAVGPLGRA-----AEADLRA 132
Query: 64 KADGGHSALQYACSKG 79
G + Y+ SKG
Sbjct: 133 GDGGVAACYSYSHSKG 148
>gnl|CDD|239685 cd03715, RT_ZFREV_like, RT_ZFREV_like: A subfamily of reverse
transcriptases (RTs) found in sequences similar to the
intact endogenous retrovirus ZFERV from zebrafish and to
Moloney murine leukemia virus RT. An RT gene is usually
indicative of a mobile element such as a retrotransposon
or retrovirus. RTs occur in a variety of mobile
elements, including retrotransposons, retroviruses,
group II introns, bacterial msDNAs, hepadnaviruses, and
caulimoviruses. These elements can be divided into two
major groups. One group contains retroviruses and DNA
viruses whose propagation involves an RNA intermediate.
They are grouped together with transposable elements
containing long terminal repeats (LTRs). The other
group, also called poly(A)-type retrotransposons,
contain fungal mitochondrial introns and transposable
elements that lack LTRs. Phylogenetic analysis suggests
that ZFERV belongs to a distinct group of retroviruses.
Length = 210
Score = 26.9 bits (60), Expect = 5.4
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 104 PLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPL 140
PL R A +GITP ++ LL I V + NTP+
Sbjct: 8 PLPREAREGITPHIQELLEAG--ILVPCQSPW-NTPI 41
>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional.
Length = 764
Score = 27.2 bits (60), Expect = 7.4
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 16 DVVDFLLKNKSPVDPKDDTNRTPL---ILAAAAGKLEIVRLLISNGADVNAKADGGHSAL 72
VV L+ + KD RT L IL +I++LL G D+N + G++ L
Sbjct: 298 SVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNI-STDIIKLLHEYGNDLNEPDNIGNTVL 356
Query: 73 Q 73
Sbjct: 357 H 357
>gnl|CDD|146824 pfam04384, Fe-S_assembly, Iron-sulphur cluster assembly. This
family of proteins is likely to be involved in the
assembly of iron-sulphur clusters. It may function as an
adaptor protein. In Escherichia coli iscX forms part of
the isc operon, which encodes genes involved in
iron-sulphur cluster assembly. Its structure is entirely
alpha helical, and it contains a modified wing-helix
structure, usually found in DNA-binding proteins. It
binds to Fe2+ and Fe3+ ions and to the cysteine
desulfurase IscS, the same surface of the protein is
involved in both binding to iron and to IscS.
Length = 64
Score = 24.9 bits (55), Expect = 8.1
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 82 EIAELLIHNHANVNIQDVRGATPLHR 107
+IA L + +V+ VR T LH+
Sbjct: 8 DIAIELEEKYPDVDPLTVR-FTDLHQ 32
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.136 0.397
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,334,363
Number of extensions: 967329
Number of successful extensions: 1072
Number of sequences better than 10.0: 1
Number of HSP's gapped: 922
Number of HSP's successfully gapped: 116
Length of query: 198
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 106
Effective length of database: 6,857,034
Effective search space: 726845604
Effective search space used: 726845604
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.2 bits)