RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14007
(198 letters)
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 181 bits (463), Expect = 5e-56
Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 2/167 (1%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
H AA G+ V + LL+ + + TPL +A L+IV+LL+ G ++ A
Sbjct: 151 HVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAW 210
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
G++ L A + E+A L+ + N + V+G TPLH AA +G +V LLL++
Sbjct: 211 NGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK--Q 268
Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
+ N+ + G TPLH +E + A +L++ G +D + TPL
Sbjct: 269 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPL 315
Score = 178 bits (454), Expect = 1e-54
Identities = 61/176 (34%), Positives = 82/176 (46%), Gaps = 8/176 (4%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
H AA +G +V +LL+NK+ V+ K ++TPL AA G +V+LL+ N A+ N
Sbjct: 52 HMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATT 111
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
GH+ L A +G E L+ A+ +G TPLH AA G V +LLL + D
Sbjct: 112 AGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER--D 169
Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLA 182
N G TPLH A L KLL+ G TPL H+A
Sbjct: 170 AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPL------HIA 219
Score = 178 bits (453), Expect = 2e-54
Identities = 56/168 (33%), Positives = 82/168 (48%), Gaps = 2/168 (1%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H A+ G +V LL+ + + + TPL +AA AG E+ + L+ N A VNAKA
Sbjct: 18 LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA 77
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
+ L A G + +LL+ N+AN N+ G TPLH AA +G V LL +
Sbjct: 78 KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK-- 135
Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
+ G TPLH A + ++ A+LL+ A + K TPL
Sbjct: 136 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPL 183
Score = 177 bits (451), Expect = 4e-54
Identities = 53/169 (31%), Positives = 79/169 (46%), Gaps = 2/169 (1%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
H AA + +V LL+ + + TPL LAA G E+V LL+S A+ N
Sbjct: 217 HIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK 276
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
G + L +G +A++LI + V+ G TPLH A+ G +VK LL
Sbjct: 277 SGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH--Q 334
Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
DVN G +PLH A ++ LL++ GA + + + TPL +
Sbjct: 335 ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAI 383
Score = 175 bits (447), Expect = 1e-53
Identities = 54/176 (30%), Positives = 73/176 (41%), Gaps = 8/176 (4%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
H AA G + V LL+ ++ TPL +AA GK+ + LL+ A NA
Sbjct: 118 HIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK 177
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
G + L A +I +LL+ + + G TPLH AA Q V + LL
Sbjct: 178 NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY--G 235
Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLA 182
N G TPLH A +E LL+ A ++ NK TPL HL
Sbjct: 236 GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPL------HLV 285
Score = 171 bits (435), Expect = 9e-52
Identities = 47/171 (27%), Positives = 82/171 (47%), Gaps = 5/171 (2%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
H AA G ++V LL ++ + + + TPL L A G + + +LI +G V+A
Sbjct: 250 HLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTR 309
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
G++ L A G ++ + L+ + A+VN + G +PLH+AA QG T +V LLL
Sbjct: 310 MGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN--G 367
Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLVRC---GARLDIQNKEKKTPLD 174
N + G TPL A ++ +L + + + +K + + +
Sbjct: 368 ASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPE 418
Score = 156 bits (397), Expect = 3e-46
Identities = 49/146 (33%), Positives = 68/146 (46%), Gaps = 2/146 (1%)
Query: 28 VDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELL 87
++ TPL +A+ G L IV+ L+ GA N + L A G E+A+ L
Sbjct: 7 GGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYL 66
Query: 88 IHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEK 147
+ N A VN + TPLH AA G T +VKLLL + + N+ G+TPLH A E
Sbjct: 67 LQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLEN--NANPNLATTAGHTPLHIAAREG 124
Query: 148 RLTDAKLLVRCGARLDIQNKEKKTPL 173
+ L+ A K+ TPL
Sbjct: 125 HVETVLALLEKEASQACMTKKGFTPL 150
Score = 145 bits (368), Expect = 6e-42
Identities = 43/138 (31%), Positives = 64/138 (46%), Gaps = 1/138 (0%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
H A G V D L+K+ VD TPL +A+ G +++V+ L+ + ADVNAK
Sbjct: 283 HLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTK 342
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
G+S L A +G +I LL+ N A+ N G TPL A G V +L +
Sbjct: 343 LGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDE 402
Query: 127 -IDVNITDAYGNTPLHYA 143
V ++D + +
Sbjct: 403 TSFVLVSDKHRMSFPETV 420
Score = 130 bits (329), Expect = 2e-36
Identities = 37/118 (31%), Positives = 48/118 (40%), Gaps = 2/118 (1%)
Query: 56 SNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITP 115
S G + G + L A G I + L+ A+ N+ +V+ TPLH AA G T
Sbjct: 2 SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTE 61
Query: 116 VVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
V K LL VN TPLH A KLL+ A ++ TPL
Sbjct: 62 VAKYLLQN--KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPL 117
Score = 72.5 bits (179), Expect = 2e-15
Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 12/96 (12%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLL---ISNGADVNA 63
H AA G D+V LLKN + + TPL +A G + + +L + V
Sbjct: 349 HQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLV 408
Query: 64 KADGGHSALQYACSKGWKEIAELLIHNHANVNIQDV 99
S E + ++ + + +
Sbjct: 409 SDKHRMSFP---------ETVDEILDVSEDEGEELI 435
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 171 bits (435), Expect = 7e-55
Identities = 49/167 (29%), Positives = 73/167 (43%), Gaps = 3/167 (1%)
Query: 7 HWAALSGREDVVDFLLKN-KSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
H A G D + L+ + V+ D+ TPLI A+A G++E VR L+ GAD + A
Sbjct: 7 HQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILA 66
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
SAL A + G+ +I LL+ ++NI D G TPL A V+ LL +
Sbjct: 67 KERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR-- 124
Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTP 172
D+ G TP+ A +++ +L N P
Sbjct: 125 GADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171
Score = 146 bits (370), Expect = 5e-45
Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 3/142 (2%)
Query: 35 NRTPLILAAAAGKLEIVRLLISNGAD-VNAKADGGHSALQYACSKGWKEIAELLIHNHAN 93
+ + AA G+L+ ++ + G + VN + G + L +A + G E L+ A+
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 94 VNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAK 153
+I + L A++ G T +V LLL + D+D+NI D G TPL YA + +
Sbjct: 62 PHILAKERESALSLASTGGYTDIVGLLLER--DVDINIYDWNGGTPLLYAVRGNHVKCVE 119
Query: 154 LLVRCGARLDIQNKEKKTPLDL 175
L+ GA L + TP+DL
Sbjct: 120 ALLARGADLTTEADSGYTPMDL 141
Score = 99.8 bits (250), Expect = 5e-27
Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 3/108 (2%)
Query: 67 GGHSALQYACSKGWKEIAELLIHNHAN-VNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
G ++ ++G + + + N VN D RG TPL A++ G V+ LL
Sbjct: 1 GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW-- 58
Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
D +I + L A LL+ ++I + TPL
Sbjct: 59 GADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPL 106
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 172 bits (439), Expect = 2e-54
Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 3/170 (1%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA-DVNAKA 65
H AA R D LL+ + + +D+ RTPL A +A + ++LI N A D++A+
Sbjct: 62 HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
G + L A + + E LI++HA+VN D G + LH AA+ +LL
Sbjct: 122 HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN-- 179
Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
+ ++ + TPL A E AK+L+ A DI + + P D+
Sbjct: 180 GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 229
Score = 159 bits (405), Expect = 3e-49
Identities = 50/162 (30%), Positives = 76/162 (46%), Gaps = 5/162 (3%)
Query: 7 HWAALSGREDVVDFLLKNK-SPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
H A + + V L++N+ + +D + TPLILAA ++ LI++ ADVNA
Sbjct: 95 HAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD 154
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
D G SAL +A + + A +L+ N AN ++Q+ R TPL AA +G K+LL
Sbjct: 155 DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH-- 212
Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNK 167
+ +ITD P A E +LL +
Sbjct: 213 FANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHH--HHHHH 252
Score = 154 bits (393), Expect = 2e-47
Identities = 48/184 (26%), Positives = 81/184 (44%), Gaps = 10/184 (5%)
Query: 1 NERLLIHWAALSGREDVVDFLLKNK-SPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA 59
+ V+ + S + D T T L LAA + + + L+ A
Sbjct: 22 GGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA 81
Query: 60 DVNAKADGGHSALQYACSKGWKEIAELLIHNHA-NVNIQDVRGATPLHRAASQGITPVVK 118
D N + + G + L A S + + ++LI N A +++ + G TPL AA + +++
Sbjct: 82 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLE 141
Query: 119 LLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPL 178
L+ DVN D G + LH+A + A +L++ GA D+QN ++TPL
Sbjct: 142 DLINS--HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPL----- 194
Query: 179 PHLA 182
LA
Sbjct: 195 -FLA 197
Score = 137 bits (348), Expect = 1e-40
Identities = 43/169 (25%), Positives = 68/169 (40%), Gaps = 21/169 (12%)
Query: 28 VDPKDDTNRTPLILAAAAGK-------------LEIVRLLISNGADV-NAKADGGHSALQ 73
V+ + TPL++A+ +G ++ I GA + N G +AL
Sbjct: 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALH 62
Query: 74 YACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITD 133
A + A+ L+ A+ NIQD G TPLH A S V ++L+ R D++
Sbjct: 63 LAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR-ATDLDARM 121
Query: 134 AYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLA 182
G TPL A + L+ A ++ + K+ L H A
Sbjct: 122 HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL------HWA 164
Score = 97.2 bits (243), Expect = 4e-25
Identities = 40/138 (28%), Positives = 52/138 (37%), Gaps = 23/138 (16%)
Query: 60 DVNAKADGGHSALQYACSKGW-------------KEIAELLIHNHANV-NIQDVRGATPL 105
DVN + G + L A G + I+ A++ N D G T L
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 106 HRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGAR-LDI 164
H AA + K LL D NI D G TPLH A ++L+R A LD
Sbjct: 62 HLAARYSRSDAAKRLLEA--SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119
Query: 165 QNKEKKTPLDLLPLPHLA 182
+ + TPL LA
Sbjct: 120 RMHDGTTPL------ILA 131
Score = 39.0 bits (92), Expect = 4e-04
Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 24/72 (33%)
Query: 127 IDVNITDAYGNTPLHYACEEKRLTD-------------AKLLVRCGARLDIQN---KEKK 170
+DVN+ G TPL A + + GA + N + +
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGA--SLHNQTDRTGE 58
Query: 171 TPLDLLPLPHLA 182
T L HLA
Sbjct: 59 TAL------HLA 64
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 170 bits (434), Expect = 7e-54
Identities = 56/170 (32%), Positives = 91/170 (53%), Gaps = 3/170 (1%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA-DVNAKA 65
AA + + V +L+K + VDPKD T L LAA G E+V+ L+SNG DVN +
Sbjct: 49 MEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQD 108
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
DGG + + +A ++ +LL+ +++NI+D LH AA G + ++LL
Sbjct: 109 DGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAA-- 166
Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
D++ + +G++PLH A E R L + + + ++NKE +TPL
Sbjct: 167 KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQC 216
Score = 166 bits (424), Expect = 2e-52
Identities = 56/168 (33%), Positives = 83/168 (49%), Gaps = 3/168 (1%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
H AA +G D+ L++ + +D + RTPL+ AA LE V+ LI GA V+ K
Sbjct: 16 HAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDA 75
Query: 67 GGHSALQYACSKGWKEIAELLI-HNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
G + L A KG E+ + L+ + +VN QD G TP+ A +VKLLL++
Sbjct: 76 EGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK-- 133
Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
D+NI D N LH+A + A++L+ L N +PL
Sbjct: 134 GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPL 181
Score = 160 bits (408), Expect = 6e-50
Identities = 48/155 (30%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 7 HWAALSGREDVVDFLLKNKSP-VDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
H AA G +VV +LL N V+ +DD TP+I A +++V+LL+S G+D+N +
Sbjct: 82 HLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRD 141
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
+ + L +A G +IAE+L+ +++ ++ G +PLH AA + V L L++
Sbjct: 142 NEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR-- 199
Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
D DV + + G TPL A ++ A + +
Sbjct: 200 DSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234
Score = 149 bits (379), Expect = 1e-45
Identities = 47/146 (32%), Positives = 77/146 (52%), Gaps = 1/146 (0%)
Query: 28 VDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELL 87
+ R+PL AA AG ++I +L+ GA+++ ++ + L A E + L
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYL 63
Query: 88 IHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEK 147
I A V+ +D G+T LH AA +G VV+ LL+ +DVN D G TP+ +A E K
Sbjct: 64 IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG-QMDVNCQDDGGWTPMIWATEYK 122
Query: 148 RLTDAKLLVRCGARLDIQNKEKKTPL 173
+ KLL+ G+ ++I++ E+ L
Sbjct: 123 HVDLVKLLLSKGSDINIRDNEENICL 148
Score = 129 bits (326), Expect = 1e-37
Identities = 28/120 (23%), Positives = 51/120 (42%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
WA D+V LL S ++ +D+ L AA +G ++I +L++ D++A
Sbjct: 116 IWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNI 175
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
G S L A + + L + ++V +++ G TPL A+ + D
Sbjct: 176 HGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235
Score = 110 bits (277), Expect = 3e-30
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 3/116 (2%)
Query: 59 ADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVK 118
+ + S L A G +I +L+ AN++ TPL AA VK
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK 61
Query: 119 LLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGAR-LDIQNKEKKTPL 173
L+ V+ DA G+T LH A ++ + L+ G ++ Q+ TP+
Sbjct: 62 YLIKA--GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM 115
Score = 79.4 bits (197), Expect = 1e-18
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 91 HANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLT 150
H N ++ +PLH AA G + +L+ +++ TPL A E L
Sbjct: 1 HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQA--GANIDTCSEDQRTPLMEAAENNHLE 58
Query: 151 DAKLLVRCGARLDIQNKEKKTPL 173
K L++ GA +D ++ E T L
Sbjct: 59 AVKYLIKAGALVDPKDAEGSTCL 81
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 168 bits (428), Expect = 7e-54
Identities = 47/162 (29%), Positives = 73/162 (45%), Gaps = 2/162 (1%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
H A G + ++ ++ ++ D+ TPL+ AAA G++ +V L+ NGAD
Sbjct: 8 HQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK 67
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
G SAL ACSKG+ +I ++L+ +VN D G TPL A VK+LL
Sbjct: 68 GRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES--G 125
Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKE 168
D I G + A + +++ +L KE
Sbjct: 126 ADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167
Score = 151 bits (383), Expect = 5e-47
Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 2/141 (1%)
Query: 35 NRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANV 94
N + AA G++ + I +N + G + L +A + G + E L+ N A+
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62
Query: 95 NIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKL 154
+ + L A S+G T +VK+LL +DVN D G TPL YA + K+
Sbjct: 63 QLLGKGRESALSLACSKGYTDIVKMLLDC--GVDVNEYDWNGGTPLLYAVHGNHVKCVKM 120
Query: 155 LVRCGARLDIQNKEKKTPLDL 175
L+ GA I+ +DL
Sbjct: 121 LLESGADPTIETDSGYNSMDL 141
Score = 105 bits (265), Expect = 3e-29
Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 2/107 (1%)
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
++ ++G I +N D G TPL AA+ G VV+ LL
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN--G 59
Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
D + + L AC + K+L+ CG ++ + TPL
Sbjct: 60 ADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPL 106
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 169 bits (432), Expect = 2e-53
Identities = 61/172 (35%), Positives = 86/172 (50%), Gaps = 5/172 (2%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKD-DTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
HWAA++ R D+V + + + VD D N TPL A G L +V L+ GAD +
Sbjct: 47 HWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLID 106
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITP-VVKLLLTQR 124
G S + A G I LI +V++ D G TPL AA + + +LLLT
Sbjct: 107 GEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF- 165
Query: 125 LDIDVNITDAY-GNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
++ VN+ D Y NT LH+A T LL+ GA +D QN + ++ LDL
Sbjct: 166 -NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDL 216
Score = 167 bits (426), Expect = 1e-52
Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 5/171 (2%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
I A G + L++ V D N T L AA ++++V+ IS GA V+
Sbjct: 13 IVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG 72
Query: 66 -DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQR 124
D + L +A +G + L+ A+ ++ D G + +H AA G T +V L+ +
Sbjct: 73 GDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK- 131
Query: 125 LDIDVNITDAYGNTPLHYACEEKRLTD-AKLLVRCGARLDIQNK-EKKTPL 173
DV++ D G TPL +A D +LL+ +++ +K K T L
Sbjct: 132 -GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTAL 181
Score = 151 bits (384), Expect = 3e-46
Identities = 44/166 (26%), Positives = 66/166 (39%), Gaps = 9/166 (5%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
HWA G +V L+K + D + + LAA G IV LI+ G DV+
Sbjct: 81 HWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQ 140
Query: 67 GGHSALQYACSKG-WKEIAELLIHNHANVNIQD-VRGATPLHRAASQGITPVVKLLLTQR 124
G + L +A + + LL+ + +VN+ D T LH A G T V+ LLL
Sbjct: 141 NGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA- 199
Query: 125 LDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKK 170
+V+ + G + L A + K + L K
Sbjct: 200 -GANVDAQNIKGESALDLAKQRKNVWMINHLQEARQ-----AKGYD 239
Score = 151 bits (383), Expect = 4e-46
Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 3/147 (2%)
Query: 28 VDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELL 87
+ DD + ++ A G E R L+ G DV + L +A ++ +
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61
Query: 88 IHNHANVNIQDV-RGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEE 146
I A V+ +TPLH A QG +V L+ D ++ D G + +H A +
Sbjct: 62 ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY--GADPSLIDGEGCSCIHLAAQF 119
Query: 147 KRLTDAKLLVRCGARLDIQNKEKKTPL 173
+ L+ G +D+ ++ TPL
Sbjct: 120 GHTSIVAYLIAKGQDVDMMDQNGMTPL 146
Score = 127 bits (322), Expect = 7e-37
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 2/127 (1%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAG-KLEIVRLLISNGADVNAK 64
IH AA G +V +L+ VD D TPL+ AA ++ RLL++ VN
Sbjct: 113 IHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLG 172
Query: 65 AD-GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQ 123
++AL +A G + LL+ ANV+ Q+++G + L A + ++ L
Sbjct: 173 DKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232
Query: 124 RLDIDVN 130
R +
Sbjct: 233 RQAKGYD 239
Score = 95.2 bits (238), Expect = 2e-24
Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 2/94 (2%)
Query: 7 HWAALSG-REDVVDFLLKNKSPVDPKDDTN-RTPLILAAAAGKLEIVRLLISNGADVNAK 64
WAA D LL V+ D + T L A AG ++ LL+ GA+V+A+
Sbjct: 147 MWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQ 206
Query: 65 ADGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
G SAL A + + L +
Sbjct: 207 NIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240
Score = 73.6 bits (182), Expect = 2e-16
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 3/82 (3%)
Query: 93 NVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDA 152
++ D + +A GI + L+ DV D T LH+A R+
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEA--GYDVRQPDKENVTLLHWAAINNRIDLV 58
Query: 153 KLLVRCGARLDIQNKEK-KTPL 173
K + GA +D + TPL
Sbjct: 59 KYYISKGAIVDQLGGDLNSTPL 80
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 169 bits (430), Expect = 2e-53
Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 3/170 (1%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA-DVNAKA 65
H AA R D LL+ + + +D+ RTPL A +A + ++LI N A D++A+
Sbjct: 30 HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 89
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
G + L A + + E LI++HA+VN D G + LH AA+ +LL
Sbjct: 90 HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN-- 147
Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
+ ++ + TPL A E AK+L+ A DI + + P D+
Sbjct: 148 GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 197
Score = 158 bits (402), Expect = 4e-49
Identities = 50/155 (32%), Positives = 75/155 (48%), Gaps = 3/155 (1%)
Query: 7 HWAALSGREDVVDFLLKNK-SPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
H A + + V L++N+ + +D + TPLILAA ++ LI++ ADVNA
Sbjct: 63 HAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD 122
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
D G SAL +A + + A +L+ N AN ++Q+ R TPL AA +G K+LL
Sbjct: 123 DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH-- 180
Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
+ +ITD P A E +LL
Sbjct: 181 FANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL 215
Score = 149 bits (380), Expect = 8e-46
Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 10/172 (5%)
Query: 13 GREDVVDFLLKNKSPV-DPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSA 71
V+ + + + + D T T L LAA + + + L+ AD N + + G +
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61
Query: 72 LQYACSKGWKEIAELLIHNHA-NVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVN 130
L A S + + ++LI N A +++ + G TPL AA + +++ L+ DVN
Sbjct: 62 LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS--HADVN 119
Query: 131 ITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLA 182
D G + LH+A + A +L++ GA D+QN ++TPL LA
Sbjct: 120 AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPL------FLA 165
Score = 134 bits (339), Expect = 1e-39
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 9/135 (6%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
AA E +++ L+ + + V+ DD ++ L AAA ++ +L+ NGA+ + + +
Sbjct: 97 ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN 156
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
+ L A +G E A++L+ + AN +I D P A + +V+LL
Sbjct: 157 REETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEY--- 213
Query: 127 IDVNITDAYGNTPLH 141
+ + LH
Sbjct: 214 ------NLVRSPQLH 222
Score = 127 bits (322), Expect = 4e-37
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 8/139 (5%)
Query: 45 AGKLEIVRLLISNGADV-NAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGAT 103
++ I GA + N G +AL A + A+ L+ A+ NIQD G T
Sbjct: 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 60
Query: 104 PLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLD 163
PLH A S V ++L+ R D++ G TPL A + L+ A ++
Sbjct: 61 PLHAAVSADAQGVFQILIRNR-ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN 119
Query: 164 IQNKEKKTPLDLLPLPHLA 182
+ K+ L H A
Sbjct: 120 AVDDLGKSAL------HWA 132
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 170 bits (433), Expect = 3e-53
Identities = 50/169 (29%), Positives = 73/169 (43%), Gaps = 4/169 (2%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
H A L G V LLK+ + V+ TPL A +G + V LL+ +GA V ++D
Sbjct: 41 HEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD 100
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
S + A +G E LI N++ + TPL+ A VK LL D
Sbjct: 101 LA-SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGAD 159
Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
++ ++PLH A LL+ GA +N E K P++L
Sbjct: 160 VN---QGKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVEL 205
Score = 163 bits (416), Expect = 7e-51
Identities = 49/176 (27%), Positives = 83/176 (47%), Gaps = 10/176 (5%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
H AA+ G + + L+ V+ + +PL A G L V++L+ +GA VN
Sbjct: 8 HEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTA 67
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
H+ L AC G + LL+ + A+V + A+P+H AA +G V L+
Sbjct: 68 DWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAY--G 124
Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLA 182
+++ ++ TPL+ ACE ++ K L+ GA ++ Q K + +PL H
Sbjct: 125 GNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPL------HAV 173
Score = 162 bits (413), Expect = 2e-50
Identities = 42/169 (24%), Positives = 70/169 (41%), Gaps = 6/169 (3%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
A +SG D V+ LL++ + V P+ D +P+ AA G +E V LI+ G +++ K
Sbjct: 74 FNACVSGSWDCVNLLLQHGASVQPESD-LASPIHEAARRGHVECVNSLIAYGGNIDHKIS 132
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
+ L AC + + L+ + A+VN Q +PLH A + LL+
Sbjct: 133 HLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVARTASEELACLLMDF--G 189
Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
D +A G P+ E L A+L + + +
Sbjct: 190 ADTQAKNAEGKRPVELVPPESPL--AQLFLEREGPPSLMQLCRLRIRKC 236
Score = 151 bits (384), Expect = 6e-46
Identities = 36/151 (23%), Positives = 63/151 (41%), Gaps = 5/151 (3%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
IH AA G + V+ L+ +D K TPL LA + V+ L+ +GADVN +
Sbjct: 105 IHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QG 163
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
G S L +E+A LL+ A+ ++ G P+ + P+ +L L +
Sbjct: 164 KGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLER-- 219
Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLV 156
+ ++ ++ KL++
Sbjct: 220 EGPPSLMQLCRLRIRKCFGIQQHHKITKLVL 250
Score = 144 bits (367), Expect = 2e-43
Identities = 40/147 (27%), Positives = 57/147 (38%), Gaps = 9/147 (6%)
Query: 36 RTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVN 95
+P+ AA G +R LIS G VN S L AC G ++L+ + A VN
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 96 IQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLL 155
TPL A G V LLL + ++ +P+H A + L
Sbjct: 64 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ---PESDLASPIHEAARRGHVECVNSL 120
Query: 156 VRCGARLDIQNKEKKTPLDLLPLPHLA 182
+ G +D + TPL +LA
Sbjct: 121 IAYGGNIDHKISHLGTPL------YLA 141
Score = 102 bits (256), Expect = 5e-27
Identities = 32/115 (27%), Positives = 45/115 (39%), Gaps = 9/115 (7%)
Query: 68 GHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDI 127
S + A G + LI VNI +PLH A G VK+LL
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKH--GA 60
Query: 128 DVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLA 182
VN A +TPL AC LL++ GA + ++ + +P+ H A
Sbjct: 61 QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPI------HEA 108
Score = 72.1 bits (178), Expect = 9e-16
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 99 VRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRC 158
+ +P+H AA G ++ L++Q VNI A +PLH AC L+ K+L++
Sbjct: 1 MSDWSPMHEAAIHGHQLSLRNLISQ--GWAVNIITADHVSPLHEACLGGHLSCVKILLKH 58
Query: 159 GARLDIQNKEKKTPL 173
GA+++ + TPL
Sbjct: 59 GAQVNGVTADWHTPL 73
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 168 bits (428), Expect = 2e-52
Identities = 50/169 (29%), Positives = 73/169 (43%), Gaps = 4/169 (2%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
H A L G V LLK+ + V+ TPL A +G + V LL+ +GA V ++D
Sbjct: 97 HEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD 156
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
S + A +G E LI N++ + TPL+ A VK LL D
Sbjct: 157 LA-SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGAD 215
Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
++ ++PLH A LL+ GA +N E K P++L
Sbjct: 216 VN---QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVEL 261
Score = 151 bits (384), Expect = 9e-46
Identities = 43/205 (20%), Positives = 64/205 (31%), Gaps = 40/205 (19%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDT-------------------------------NRT 37
+ L+ S + D + +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWS 61
Query: 38 PLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQ 97
P+ AA G +R LIS G VN S L AC G ++L+ + A VN
Sbjct: 62 PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV 121
Query: 98 DVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVR 157
TPL A G V LLL + ++ +P+H A + L+
Sbjct: 122 TADWHTPLFNACVSGSWDCVNLLLQHGASVQ---PESDLASPIHEAARRGHVECVNSLIA 178
Query: 158 CGARLDIQNKEKKTPLDLLPLPHLA 182
G +D + TPL +LA
Sbjct: 179 YGGNIDHKISHLGTPL------YLA 197
Score = 149 bits (380), Expect = 3e-45
Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 5/157 (3%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
A +SG D V+ LL++ + V P+ D +P+ AA G +E V LI+ G +++ K
Sbjct: 130 FNACVSGSWDCVNLLLQHGASVQPESD-LASPIHEAARRGHVECVNSLIAYGGNIDHKIS 188
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
+ L AC + + L+ + A+VN Q +PLH + LL+
Sbjct: 189 HLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDF--G 245
Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLD 163
D +A G P+ E L L R GA L
Sbjct: 246 ADTQAKNAEGKRPVELVPPESPLA-QLFLEREGASLP 281
Score = 125 bits (316), Expect = 1e-35
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
IH AA G + V+ L+ +D K TPL LA + V+ L+ +GADVN +
Sbjct: 161 IHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QG 219
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL 121
G S L +E+A LL+ A+ ++ G P+ + P+ +L L
Sbjct: 220 KGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFL 273
Score = 114 bits (289), Expect = 1e-31
Identities = 30/133 (22%), Positives = 60/133 (45%), Gaps = 4/133 (3%)
Query: 41 LAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVR 100
+ ++ L+ G+ + + DG + + G ++ + + ++ V
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASM-DGKQGGMDGSKPAGPRDFPGIRLLSNPL-MGDAVS 58
Query: 101 GATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
+P+H AA G ++ L++Q VNI A +PLH AC L+ K+L++ GA
Sbjct: 59 DWSPMHEAAIHGHQLSLRNLISQ--GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA 116
Query: 161 RLDIQNKEKKTPL 173
+++ + TPL
Sbjct: 117 QVNGVTADWHTPL 129
Score = 60.6 bits (148), Expect = 2e-11
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNA 63
H + E++ L+ + K+ + P+ L L + L GA +
Sbjct: 227 HAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL-FLEREGASLPK 282
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 165 bits (421), Expect = 5e-52
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 7/175 (4%)
Query: 7 HWAALSGREDVVDFLLKNKSPV---DPKDDTNRTPLILAAAAGKLEIVRLLISN--GADV 61
HW+ ++ FLL V D DD+ TP +A + G LE+V+ L D+
Sbjct: 41 HWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL 100
Query: 62 NAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL 121
N + G + L A K W E+++ LI N A+V I+D PLHRAAS G +++LL
Sbjct: 101 NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC 160
Query: 122 TQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLV-RCGARLDIQNKEKKTPLDL 175
VN D G TPL +A E A LLV + GA D+ + + D+
Sbjct: 161 GLG-KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214
Score = 153 bits (389), Expect = 4e-47
Identities = 48/174 (27%), Positives = 71/174 (40%), Gaps = 9/174 (5%)
Query: 7 HWAALSGR-EDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNA-- 63
H A + V + L S + KD R PL + + EI L+S +VN
Sbjct: 7 HQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDD 66
Query: 64 -KADGGHSALQYACSKGWKEIAELLIHNH--ANVNIQDVRGATPLHRAASQGITPVVKLL 120
D G + ACS G E+ + L ++N +G T LH A + V + L
Sbjct: 67 YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFL 126
Query: 121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCG-ARLDIQNKEKKTPL 173
+ V I D + PLH A L +LL G + ++ Q+K+ TPL
Sbjct: 127 IEN--GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Score = 150 bits (382), Expect = 4e-46
Identities = 43/153 (28%), Positives = 62/153 (40%), Gaps = 7/153 (4%)
Query: 7 HWAALSGREDVVDFLLKN--KSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK 64
H A G +VV L K ++ + T L LA E+ + LI NGA V K
Sbjct: 77 HIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK 136
Query: 65 ADGGHSALQYACSKGWKEIAELLI-HNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQ 123
L A S G ++ ELL + VN QD +G TPL A ++G LL+ +
Sbjct: 137 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196
Query: 124 RLDIDVNITDAYGNTPLHYACEEKRLTDAKLLV 156
+ ++ D G A E+ K +
Sbjct: 197 Y-GAEYDLVDNKGAKAEDVALNEQV---KKFFL 225
Score = 147 bits (373), Expect = 1e-44
Identities = 44/143 (30%), Positives = 64/143 (44%), Gaps = 4/143 (2%)
Query: 35 NRTPLILAAAAGKL-EIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHAN 93
+ PL A + ++ LL S + + K G L ++ S EI L+ N
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61
Query: 94 VNIQDVR---GATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLT 150
VN+ D G TP H A S G VVK L + L D+N G T LH A +K
Sbjct: 62 VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121
Query: 151 DAKLLVRCGARLDIQNKEKKTPL 173
++ L+ GA + I++K + PL
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPL 144
Score = 43.2 bits (103), Expect = 1e-05
Identities = 8/52 (15%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 7 HWAALSGREDVVDFLLKNKSP-VDPKDDTNRTPLILAAAAGKLEIVRLLISN 57
A G D L++ D D+ +A ++ + ++N
Sbjct: 179 FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNN 227
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 164 bits (417), Expect = 9e-52
Identities = 49/175 (28%), Positives = 75/175 (42%), Gaps = 7/175 (4%)
Query: 5 LIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK 64
L+ A + V + L VD D TPL +A +EI + LI GAD+N +
Sbjct: 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ 68
Query: 65 ADGGHSALQYACSKGWKEIAELLI-HNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQ 123
S YA ++G EI ++ H ++N + G L AA +G VKLLL
Sbjct: 69 NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED 128
Query: 124 RLDIDVNITDAYGNTPLHYACEEKRLTD-----AKLLVRCGARLDIQNKEKKTPL 173
D++ + +G T L A + KLL+ GA I++ +T +
Sbjct: 129 G-REDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAM 182
Score = 147 bits (373), Expect = 4e-45
Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 9/157 (5%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA-DVNAKA 65
+ A + ++ L+ + ++ ++ + +P + A A G+ EI+ ++ + D+N
Sbjct: 44 NIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHN 103
Query: 66 DGGHSALQYACSKGWKEIAELLI-HNHANVNIQDVRGATPLHRAA-----SQGITPVVKL 119
G +AL A KG + +LL+ +++ Q+ G T L A +Q +VKL
Sbjct: 104 RYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL 163
Query: 120 LLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLV 156
L+ D +I D G T + YA ++ +K+L
Sbjct: 164 LMEN--GADQSIKDNSGRTAMDYANQKGYTEISKILA 198
Score = 143 bits (364), Expect = 1e-43
Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 2/144 (1%)
Query: 31 KDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHN 90
K L A ++ +L V+ G++ L A EIA+ LI
Sbjct: 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61
Query: 91 HANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLT 150
A++N+Q+ +P A +QG T ++ +L D+N + YG L A E+ +
Sbjct: 62 GADINLQNSISDSPYLYAGAQGRTEILAYMLKHA-TPDLNKHNRYGGNALIPAAEKGHID 120
Query: 151 DAKLLVRCG-ARLDIQNKEKKTPL 173
+ KLL+ G +D QN T L
Sbjct: 121 NVKLLLEDGREDIDFQNDFGYTAL 144
Score = 90.6 bits (226), Expect = 5e-23
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 7/91 (7%)
Query: 7 HWAALSGREDVVDFLLKN-KSPVDPKDDTNRTPLILAAAA-----GKLEIVRLLISNGAD 60
AA G D V LL++ + +D ++D T LI A +IV+LL+ NGAD
Sbjct: 111 IPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD 170
Query: 61 VNAKADGGHSALQYACSKGWKEIAELLI-HN 90
+ K + G +A+ YA KG+ EI+++L +N
Sbjct: 171 QSIKDNSGRTAMDYANQKGYTEISKILAQYN 201
Score = 73.6 bits (182), Expect = 1e-16
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 96 IQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLL 155
++ L A + V ++L V+ D GNTPL+ A + AK L
Sbjct: 1 MKTYEVGALLEAANQRDTKKVKEILQDT--TYQVDEVDTEGNTPLNIAVHNNDIEIAKAL 58
Query: 156 VRCGARLDIQNKEKKTPL 173
+ GA +++QN +P
Sbjct: 59 IDRGADINLQNSISDSPY 76
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 164 bits (419), Expect = 1e-51
Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 7/174 (4%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA----DVN 62
H A ++ VV L+ + D +T LA +R L+ + A D+
Sbjct: 51 HLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLE 110
Query: 63 AKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVR-GATPLHRAASQGITPVVKLLL 121
A+ G +AL A + +E +LL+ A+++ D++ G +PL A +V+LLL
Sbjct: 111 ARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL 170
Query: 122 TQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
+VN G++ LH A L + LVR GA ++N TPL +
Sbjct: 171 QH--GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMV 222
Score = 159 bits (405), Expect = 2e-49
Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 11/176 (6%)
Query: 7 HWAALSGREDVVDFLLKNKSP----VDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVN 62
H A + G V L+ +D ++ +TPL LA +VRLL++ GA
Sbjct: 14 HIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM 73
Query: 63 AKADGGHSALQYACSKGWKEIAELLIHNHA----NVNIQDVRGATPLHRAASQGITPVVK 118
A G +A AC L+ + A ++ ++ G T LH A + V+
Sbjct: 74 ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQ 133
Query: 119 LLLTQRLDIDVNITDA-YGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
LLL + D++ D G +PL +A E L+ +LL++ GA ++ Q + L
Sbjct: 134 LLLER--GADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSAL 187
Score = 154 bits (393), Expect = 1e-47
Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 7/159 (4%)
Query: 7 HWAALSGREDVVDFLLKNKSP----VDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVN 62
H A + LL + +P ++ ++ T L +A E V+LL+ GAD++
Sbjct: 84 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADID 143
Query: 63 AK-ADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL 121
A G S L +A + +LL+ + ANVN Q G++ LH A+ +G+ P+V+ L+
Sbjct: 144 AVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLV 203
Query: 122 TQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
D ++ + + +TPL A + + + A
Sbjct: 204 RS--GADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240
Score = 136 bits (346), Expect = 1e-40
Identities = 37/159 (23%), Positives = 61/159 (38%), Gaps = 13/159 (8%)
Query: 31 KDDTNRTPLILAAAAGKLEIVRLLIS----NGADVNAKADGGHSALQYACSKGWKEIAEL 86
D+ TPL +A G L V L++ G +++ + + L A + L
Sbjct: 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL 64
Query: 87 LIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQ--RLDIDVNITDAYGNTPLHYAC 144
L+ A+ D G T H A ++ LL +D+ + G T LH A
Sbjct: 65 LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV 124
Query: 145 EEKRLTDAKLLVRCGARLDIQN-KEKKTPLDLLPLPHLA 182
+ +LL+ GA +D + K ++PL A
Sbjct: 125 NTECQETVQLLLERGADIDAVDIKSGRSPL------IHA 157
Score = 100 bits (252), Expect = 1e-26
Identities = 21/87 (24%), Positives = 39/87 (44%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
A + +V LL++ + V+ + + + L A+ G L +VR L+ +GAD + K
Sbjct: 155 IHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNC 214
Query: 67 GGHSALQYACSKGWKEIAELLIHNHAN 93
+ L A S+ +I A+
Sbjct: 215 HNDTPLMVARSRRVIDILRGKATRPAS 241
Score = 100 bits (251), Expect = 2e-26
Identities = 32/130 (24%), Positives = 50/130 (38%), Gaps = 16/130 (12%)
Query: 61 VNAKADGGHSALQYACSKGWKEIAELLI----HNHANVNIQDVRGATPLHRAASQGITPV 116
+ G + L A +G L+ ++I + TPLH A + V
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61
Query: 117 VKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGAR----LDIQNKEKKTP 172
V+LL+T D +G T H ACE + T + L+ A L+ +N + T
Sbjct: 62 VRLLVTA--GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA 119
Query: 173 LDLLPLPHLA 182
L H+A
Sbjct: 120 L------HVA 123
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 166 bits (422), Expect = 2e-51
Identities = 58/181 (32%), Positives = 88/181 (48%), Gaps = 15/181 (8%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
H A RED+V+ LL++ + + TP +LAA AG +++++L +S GADVN
Sbjct: 44 HNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDF 103
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQD----------VRGATPLHRAASQGITPV 116
G +A A G + + L ANVN++ GAT L AA +G V
Sbjct: 104 YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV 163
Query: 117 VKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTD----AKLLVRCGARLDIQNKEKKTP 172
+K+LL + DVN D G L +A +D LL+ GA ++++ + KTP
Sbjct: 164 LKILLDEM-GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTP 222
Query: 173 L 173
L
Sbjct: 223 L 223
Score = 162 bits (412), Expect = 6e-50
Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK-- 64
AA++G ++ L + V+ D T + AA GK++ ++ L GA+VN +
Sbjct: 77 LLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK 136
Query: 65 --------ADGGHSALQYACSKGWKEIAELLI-HNHANVNIQDVRGATPLHRAASQG--- 112
GG +AL A KG E+ ++L+ A+VN D G L A
Sbjct: 137 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 196
Query: 113 -ITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAK-LLVRCGARLDIQNKEKK 170
+ + LLL DVN+ G TPL A E+K L + LL + ++ + + K
Sbjct: 197 DVEAITHLLLDH--GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK 254
Query: 171 TPL 173
T L
Sbjct: 255 TAL 257
Score = 156 bits (398), Expect = 8e-48
Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 10/177 (5%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNR-TPLILAAAAGKLEIVRLLISNGADVNAKA 65
A + D+V LL+ + V+ +++ TPL A + +IV LL+ +GAD +
Sbjct: 10 IKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRK 69
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
G + A G ++ +L + A+VN D G T AA G +K L +
Sbjct: 70 KNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGA 129
Query: 126 DI--------DVNITDAYGNTPLHYACEEKRLTDAKLLV-RCGARLDIQNKEKKTPL 173
++ D G T L A E+ + K+L+ GA ++ + + L
Sbjct: 130 NVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 186
Score = 149 bits (380), Expect = 4e-45
Identities = 56/175 (32%), Positives = 85/175 (48%), Gaps = 16/175 (9%)
Query: 7 HWAALSGREDVVDFLL----------KNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLIS 56
AA+ G+ + FL K K + T L+ AA G +E++++L+
Sbjct: 110 MEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD 169
Query: 57 N-GADVNAKADGGHSALQYACSKG----WKEIAELLIHNHANVNIQDVRGATPLHRAASQ 111
GADVNA + G +AL +A + I LL+ + A+VN++ RG TPL A +
Sbjct: 170 EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229
Query: 112 GITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQN 166
+V+ LL Q I++N TD+ G T L A E K A+LL + GA D +
Sbjct: 230 KHLGLVQRLLEQE-HIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283
Score = 139 bits (354), Expect = 3e-41
Identities = 42/139 (30%), Positives = 71/139 (51%), Gaps = 3/139 (2%)
Query: 35 NRTPLILAAAAGKLEIVRLLISNGADVNAKA-DGGHSALQYACSKGWKEIAELLIHNHAN 93
+ LI A +++V+ L+ GA+VN + +GG + L A ++I ELL+ + A+
Sbjct: 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64
Query: 94 VNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAK 153
++ GATP AA G ++KL L++ DVN D YG T A ++ K
Sbjct: 65 PVLRKKNGATPFLLAAIAGSVKLLKLFLSK--GADVNECDFYGFTAFMEAAVYGKVKALK 122
Query: 154 LLVRCGARLDIQNKEKKTP 172
L + GA ++++ K K+
Sbjct: 123 FLYKRGANVNLRRKTKEDQ 141
Score = 98.7 bits (247), Expect = 2e-25
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 7 HWAALSGR----EDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISN-GADV 61
A LS E + LL + + V+ + + +TPLILA L +V+ L+ ++
Sbjct: 187 IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI 246
Query: 62 NAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDV 99
N G +AL A K+IAELL A+ + D+
Sbjct: 247 NDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284
Score = 66.7 bits (164), Expect = 1e-13
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 98 DVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAY-GNTPLHYACEEKRLTDAKLLV 156
V L +A +V+ LL +VN + G TPLH A + R +LL+
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEG--GANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59
Query: 157 RCGARLDIQNKEKKTPL 173
R GA ++ K TP
Sbjct: 60 RHGADPVLRKKNGATPF 76
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 158 bits (403), Expect = 6e-50
Identities = 42/156 (26%), Positives = 65/156 (41%), Gaps = 3/156 (1%)
Query: 6 IHWAALSGREDVVDFLLKNK-SPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK 64
I G V L N + ++ DD +PL A G+ +V +LI GA +N
Sbjct: 9 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 68
Query: 65 ADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQR 124
G + L A S G ++I + L+ A++N + G PLH A G V + L+
Sbjct: 69 NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN- 127
Query: 125 LDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
V+I + YG P+ A R + + G
Sbjct: 128 -GALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ 162
Score = 152 bits (386), Expect = 2e-47
Identities = 50/145 (34%), Positives = 71/145 (48%), Gaps = 3/145 (2%)
Query: 32 DDTNRTPLILAAAAGKLEIVRLLISNGA-DVNAKADGGHSALQYACSKGWKEIAELLIHN 90
+ G VRL + N D+N D G S L +AC +G + E+LI
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61
Query: 91 HANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLT 150
A +N+ + TPLH AAS G +V+ LL + D+N + +GN PLHYAC +
Sbjct: 62 GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK--ADINAVNEHGNVPLHYACFWGQDQ 119
Query: 151 DAKLLVRCGARLDIQNKEKKTPLDL 175
A+ LV GA + I NK + P+D
Sbjct: 120 VAEDLVANGALVSICNKYGEMPVDK 144
Score = 139 bits (353), Expect = 2e-42
Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 1/133 (0%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
HWA GR VV+ L+ + ++ + + TPL LAA+ G +IV+ L+ AD+NA +
Sbjct: 44 HWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNE 103
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
G+ L YAC G ++AE L+ N A V+I + G P+ +A + + + +
Sbjct: 104 HGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQN 163
Query: 127 ID-VNITDAYGNT 138
++ + D +
Sbjct: 164 LNRIPYKDTFWKG 176
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 156 bits (398), Expect = 3e-49
Identities = 61/150 (40%), Positives = 84/150 (56%), Gaps = 2/150 (1%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
AA +GR+D V L+ N + V+ +D + TPL LAA G LEIV +L+ NGADVNA
Sbjct: 19 LEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDH 78
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
G + L+ A G EI E+L+ N A+VN D+ G TPLH AA G +V++LL
Sbjct: 79 AGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN--G 136
Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLV 156
DVN D +G T + + A++L
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 146 bits (372), Expect = 3e-45
Identities = 57/139 (41%), Positives = 80/139 (57%), Gaps = 2/139 (1%)
Query: 37 TPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNI 96
L+ AA AG+ + VR+L++NGADVNA+ G + L A G EI E+L+ N A+VN
Sbjct: 16 KKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA 75
Query: 97 QDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLV 156
D G TPL AA G +V++LL DVN D G+TPLH A L ++L+
Sbjct: 76 VDHAGMTPLRLAALFGHLEIVEVLLKN--GADVNANDMEGHTPLHLAAMFGHLEIVEVLL 133
Query: 157 RCGARLDIQNKEKKTPLDL 175
+ GA ++ Q+K KT D+
Sbjct: 134 KNGADVNAQDKFGKTAFDI 152
Score = 106 bits (268), Expect = 9e-30
Identities = 43/127 (33%), Positives = 61/127 (48%), Gaps = 11/127 (8%)
Query: 58 GADVNAK--ADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITP 115
G+ + +D G L A G + +L+ N A+VN +D G TPLH AA G
Sbjct: 3 GSHHHHHHGSDLG-KKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLE 61
Query: 116 VVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
+V++LL DVN D G TPL A L ++L++ GA ++ + E TPL
Sbjct: 62 IVEVLLKN--GADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPL-- 117
Query: 176 LPLPHLA 182
HLA
Sbjct: 118 ----HLA 120
Score = 55.8 bits (136), Expect = 3e-10
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLIS 56
H AA+ G ++V+ LLKN + V+ +D +T ++ G ++ +L
Sbjct: 118 HLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 157 bits (399), Expect = 4e-49
Identities = 47/175 (26%), Positives = 72/175 (41%), Gaps = 8/175 (4%)
Query: 1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
N ++ +DFL + +D NRTPL++A G + L+ N
Sbjct: 7 NGEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAIDKLVENFDK 60
Query: 61 VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
+ K G +AL +A IAE L+ +NVN +D G TPL + G + + L
Sbjct: 61 LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFL 120
Query: 121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
L +VN + G TPL A + R K L+ GA + ++ T
Sbjct: 121 LEH--GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEAS 173
Score = 156 bits (398), Expect = 5e-49
Identities = 46/150 (30%), Positives = 74/150 (49%), Gaps = 2/150 (1%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
A + G E+ +D L++N ++ KD T LI A +L I L+S G++VN K
Sbjct: 40 MVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDF 99
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
G + L ++ G+ E++ L+ + ANVN +++ G TPL A+ G + +VK LL
Sbjct: 100 SGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL--G 157
Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLV 156
D++ D G T A R K+
Sbjct: 158 ADISARDLTGLTAEASARIFGRQEVIKIFT 187
Score = 120 bits (303), Expect = 1e-34
Identities = 31/143 (21%), Positives = 56/143 (39%), Gaps = 8/143 (5%)
Query: 31 KDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHN 90
D + + + L N + + L AC G + + L+ N
Sbjct: 4 MDKNGEIVEKIKDEKSINQNLDFLR------NYRDSYNRTPLMVACMLGMENAIDKLVEN 57
Query: 91 HANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLT 150
+ +D+ G+T L A + + LL++ +VN D G TPL ++
Sbjct: 58 FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK--GSNVNTKDFSGKTPLMWSIIFGYSE 115
Query: 151 DAKLLVRCGARLDIQNKEKKTPL 173
+ L+ GA ++ +N E +TPL
Sbjct: 116 MSYFLLEHGANVNDRNLEGETPL 138
Score = 53.9 bits (131), Expect = 1e-09
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA 59
A+ GR ++V LL+ + + +D T T A G+ E++++
Sbjct: 139 IVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191
Score = 28.9 bits (66), Expect = 0.74
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 6/44 (13%)
Query: 130 NITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
+ D G E+ + L + ++ +TPL
Sbjct: 2 SHMDKNGEIVEKIKDEKSINQNLDFLR------NYRDSYNRTPL 39
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 160 bits (406), Expect = 4e-49
Identities = 33/168 (19%), Positives = 62/168 (36%), Gaps = 6/168 (3%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
++A +V LL + + + N PL AA +IV++L+ +G D + D
Sbjct: 36 YYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDD 93
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRG-ATPLHRAASQGITPVVKLLLTQRL 125
G++AL YA G + +L + + + G T + A +V L++
Sbjct: 94 KGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI- 152
Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
A + +H + + LL+ + N P
Sbjct: 153 --PSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPD 198
Score = 141 bits (358), Expect = 7e-42
Identities = 24/169 (14%), Positives = 49/169 (28%), Gaps = 12/169 (7%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTN-RTPLILAAAAGKLEIVRLLISNGADVNAKA 65
++A SG V +K + T +T A + IV +S A
Sbjct: 100 YYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLA 159
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATP-LHRAASQGITPVVKLLLTQR 124
S + G ++ LL+ + N + P + A +++ L
Sbjct: 160 IL-LSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYD 218
Query: 125 LDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
++I + AK+++ + K +
Sbjct: 219 INI---------YSANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDI 258
Score = 137 bits (347), Expect = 3e-40
Identities = 27/175 (15%), Positives = 58/175 (33%), Gaps = 13/175 (7%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
+ + + L +K D + A A + +V L++ GA N
Sbjct: 6 RINTWKSKQLKSFLSSKD-TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL--EN 62
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDID 128
L A + +I ++L+ + + + D +G T L+ A G VKL + + +
Sbjct: 63 EFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK--NWR 120
Query: 129 VNITDAYG-NTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLA 182
+ G T ++A ++ + + + H+
Sbjct: 121 LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP-STFDLAILLSCI------HIT 168
Score = 126 bits (320), Expect = 3e-36
Identities = 14/152 (9%), Positives = 46/152 (30%), Gaps = 11/152 (7%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
+ A + +V + L ++ P + + + G ++++ LL+ N
Sbjct: 134 YHAVMLNDVSIVSYFL-SEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNS 192
Query: 67 GGHS-ALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
++ A E+ + L N+ + + K+++ +
Sbjct: 193 LLFIPDIKLAIDNKDIEMLQALFKYDINIY-------SANLENVLLDDAEIAKMIIEK-- 243
Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVR 157
++ + + + + +R
Sbjct: 244 HVEYKSDSYTKDLDIVKNNKLDEIISKNKELR 275
Score = 124 bits (314), Expect = 2e-35
Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 6/135 (4%)
Query: 40 ILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDV 99
+ K + ++ + + D GHSA YA + + L++ A N+ +
Sbjct: 4 LSRINTWKSKQLKSFL-SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE- 61
Query: 100 RGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCG 159
PLH+AA+ T +VK+LL +D + D GNT L+YA + + KL V+
Sbjct: 62 -NEFPLHQAATLEDTKIVKILLFS--GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKN 118
Query: 160 ARLDIQNKE-KKTPL 173
RL K KT
Sbjct: 119 WRLMFYGKTGWKTSF 133
Score = 62.5 bits (153), Expect = 3e-12
Identities = 7/89 (7%), Positives = 22/89 (24%), Gaps = 7/89 (7%)
Query: 5 LIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK 64
I A + +++ L K + + + EI +++I + +
Sbjct: 198 DIKLAIDNKDIEMLQALFKYDINIY-------SANLENVLLDDAEIAKMIIEKHVEYKSD 250
Query: 65 ADGGHSALQYACSKGWKEIAELLIHNHAN 93
+ + +
Sbjct: 251 SYTKDLDIVKNNKLDEIISKNKELRLMYV 279
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 154 bits (393), Expect = 1e-48
Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 2/154 (1%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
AA G + + LL+N V+ ++ RT L G EI R L+ GA+ + K
Sbjct: 10 ASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLKDR 68
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
G + + A G+ + + L+ A+VNI+D G PLH AA +G VV+ L+
Sbjct: 69 TGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA- 127
Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
+V + G+T A R L+ GA
Sbjct: 128 SNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 141 bits (359), Expect = 2e-43
Identities = 51/145 (35%), Positives = 70/145 (48%), Gaps = 4/145 (2%)
Query: 32 DDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNH 91
+ L AAA G LE + L+ N +VNA+ G +ALQ G EIA L+
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLRG 60
Query: 92 ANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTD 151
AN +++D G +H AA G ++ LL DVNI D GN PLH A +E L
Sbjct: 61 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEF--QADVNIEDNEGNLPLHLAAKEGHLRV 118
Query: 152 AKLLVRCGAR-LDIQNKEKKTPLDL 175
+ LV+ A + +N + T DL
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDL 143
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 155 bits (395), Expect = 5e-48
Identities = 38/168 (22%), Positives = 62/168 (36%), Gaps = 2/168 (1%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
+ + + V + L+ ++ G+ ++V+ +I D + D
Sbjct: 10 PPGKRTNLRKTGSERIAHGMRVK-FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPND 68
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
G +AL A G EI + L+ NVN D G TPLH AAS V K L+
Sbjct: 69 EGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAA 128
Query: 127 ID-VNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
+ + +D EE ++ L ++ I NK L
Sbjct: 129 VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYAL 176
Score = 146 bits (372), Expect = 2e-44
Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 8/173 (4%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
++L G D+V ++ +D T L A AG EIV+ L+ G +VNA
Sbjct: 42 LDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADS 101
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQ---DVRGATPLHRAASQGITPVVKLLLTQ 123
G + L A S ++ + L+ + A V D++ A +G T + L
Sbjct: 102 DGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV 161
Query: 124 RLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLL 176
+ I + L + D +L ++ G + I ++E + ++
Sbjct: 162 --QEKMGIMNKGVIYALWDYEPQN---DDELPMKEGDCMTIIHREDEDEIEWW 209
Score = 137 bits (348), Expect = 6e-41
Identities = 34/145 (23%), Positives = 60/145 (41%), Gaps = 4/145 (2%)
Query: 32 DDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNH 91
+ T + L + I++G V + L + +G ++ + +I+
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEV 60
Query: 92 ANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTD 151
+ ++ + G T LH A G T +VK L+ ++VN D+ G TPLH A +
Sbjct: 61 DDPSLPNDEGITALHNAVCAGHTEIVKFLVQF--GVNVNAADSDGWTPLHCAASCNNVQV 118
Query: 152 AKLLVRCGARLDIQN-KEKKTPLDL 175
K LV GA + + +T D
Sbjct: 119 CKFLVESGAAVFAMTYSDMQTAADK 143
Score = 81.1 bits (201), Expect = 3e-19
Identities = 21/127 (16%), Positives = 34/127 (26%), Gaps = 11/127 (8%)
Query: 7 HWAALSGREDVVDFLLK---NKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNA 63
H AA V FL++ + D G + + L +
Sbjct: 108 HCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGI 167
Query: 64 KADGGHSALQYACSKGWKEIAELLIHNHANVNI--QDVRGATPLHRAAS---QGITPVVK 118
G AL + EL + + I ++ A +G P
Sbjct: 168 MNKGVIYALWDYEPQN---DDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNL 224
Query: 119 LLLTQRL 125
L L R+
Sbjct: 225 LGLYPRI 231
Score = 49.9 bits (120), Expect = 8e-08
Identities = 7/74 (9%), Positives = 17/74 (22%), Gaps = 3/74 (4%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
G FL + + + L E L + G +
Sbjct: 143 KCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDE---LPMKEGDCMTIIH 199
Query: 66 DGGHSALQYACSKG 79
+++ ++
Sbjct: 200 REDEDEIEWWWARL 213
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 152 bits (388), Expect = 7e-48
Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 3/149 (2%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
AA +G++D V L+ N +P D +PL LAA G +L+ G +A+
Sbjct: 7 LEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK 65
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
+ L A S+G I E+L+ + A+VN +D+ T LH A VV+LL+
Sbjct: 66 VDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY--G 123
Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLL 155
DV+ + T + + A++L
Sbjct: 124 ADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 140 bits (355), Expect = 5e-43
Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 3/139 (2%)
Query: 37 TPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNI 96
L+ AA AG+ + VR+L++NGA G S L A G E+L+ + +
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAPFTTDWLG-TSPLHLAAQYGHFSTTEVLLRAGVSRDA 62
Query: 97 QDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLV 156
+ TPLH AAS+G +V++LL DVN D T LH+A E +LL+
Sbjct: 63 RTKVDRTPLHMAASEGHANIVEVLLKH--GADVNAKDMLKMTALHWATEHNHQEVVELLI 120
Query: 157 RCGARLDIQNKEKKTPLDL 175
+ GA + Q+K KT D+
Sbjct: 121 KYGADVHTQSKFCKTAFDI 139
Score = 95.5 bits (239), Expect = 2e-25
Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 9/115 (7%)
Query: 68 GHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDI 127
L A G + +L+ N A D G +PLH AA G ++LL +
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRA--GV 58
Query: 128 DVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLA 182
+ TPLH A E ++L++ GA ++ ++ K T L H A
Sbjct: 59 SRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTAL------HWA 107
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 158 bits (402), Expect = 1e-47
Identities = 31/187 (16%), Positives = 64/187 (34%), Gaps = 18/187 (9%)
Query: 7 HWAALSGRE--DVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLI-----SNGA 59
HW G E +++ L++ + KD + TPL+ A E + L++ +
Sbjct: 143 HWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSL 202
Query: 60 DVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKL 119
++ G+S L +A W+++A + +VN++D PL+ + + + K
Sbjct: 203 RLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKE 262
Query: 120 LLTQRLDI-----------DVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKE 168
LL + V + A + + +LL +
Sbjct: 263 LLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNT 322
Query: 169 KKTPLDL 175
Sbjct: 323 GAGGAVK 329
Score = 155 bits (395), Expect = 1e-46
Identities = 23/187 (12%), Positives = 56/187 (29%), Gaps = 20/187 (10%)
Query: 7 HWAALSGREDVVDFLLKNKSP-----VDPKDDTNRTPLILAAAAGKLEIVRLLISNGADV 61
A + +D ++ +D + + L A ++ + G DV
Sbjct: 178 MRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDV 237
Query: 62 NAKADGGHSALQYACSKGWKEIAELLI-------------HNHANVNIQDVRGATPLHRA 108
N + + L + + + L+ HN V V + A
Sbjct: 238 NMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAA 297
Query: 109 ASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKE 168
A V++LL + +V + G ++ ++ + A + +++
Sbjct: 298 ADPSKQEVLQLLQEK--LDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRS 355
Query: 169 KKTPLDL 175
+ +
Sbjct: 356 RARSSAV 362
Score = 146 bits (370), Expect = 7e-43
Identities = 37/170 (21%), Positives = 60/170 (35%), Gaps = 18/170 (10%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
IH AA G+ D V L++ ++ T L LA G ++ + L S G +
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLW- 82
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
G + A ++ L+ G P V +
Sbjct: 83 -HGQKPIHLAVMANKTDLVVALVEGAKER------GQMPESLLNECDEREVNE------- 128
Query: 126 DIDVNITDAYGNTPLHYACEE--KRLTDAKLLVRCGARLDIQNKEKKTPL 173
I ++ G T LH+ + L K+LV+ GA ++K +TPL
Sbjct: 129 -IGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPL 177
Score = 136 bits (344), Expect = 5e-39
Identities = 27/150 (18%), Positives = 47/150 (31%), Gaps = 15/150 (10%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLIS---------- 56
HWA L EDV ++ V+ +D+ + PL L+ A + + + L+
Sbjct: 216 HWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQAC 275
Query: 57 ---NGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGI 113
NG V + A +E+ +LL V GA + +
Sbjct: 276 PYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAA 335
Query: 114 TPVVKLLLTQRLDIDVNITDAYGNTPLHYA 143
V ++ L V +
Sbjct: 336 PAVKRMKLAP--SAPVRTRSRSRARSSAVS 363
Score = 81.8 bits (203), Expect = 8e-19
Identities = 9/70 (12%), Positives = 25/70 (35%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+ AA +++V+ L + V +T + + R+ ++ A V ++
Sbjct: 294 VPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRS 353
Query: 66 DGGHSALQYA 75
+ +
Sbjct: 354 RSRARSSAVS 363
Score = 81.1 bits (201), Expect = 1e-18
Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 4/90 (4%)
Query: 84 AELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYA 143
+ N D +H AA +G T V+ L+ + I + +G T LH A
Sbjct: 3 GSMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIET--GVSPTIQNRFGCTALHLA 60
Query: 144 CEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
C+ + AK L G + P+
Sbjct: 61 CKFGCVDTAKYLASVGE--VHSLWHGQKPI 88
Score = 54.5 bits (132), Expect = 3e-09
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPH 180
+T ++ +D +H A + + + + L+ G IQN+ T L H
Sbjct: 5 MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTAL------H 58
Query: 181 LA 182
LA
Sbjct: 59 LA 60
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 152 bits (386), Expect = 2e-47
Identities = 55/155 (35%), Positives = 75/155 (48%), Gaps = 4/155 (2%)
Query: 7 HWAALSGREDVVDFLLKNKSP-VDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
AA +G + V L +S + TPL AA ++ +V L+ +GADV+AK
Sbjct: 13 LEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKD 72
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
GG L ACS G E+AELL+ + A VN+ D+ TPLH AA++G + KLLL
Sbjct: 73 KGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH-- 130
Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
D + GNTPL + LL A
Sbjct: 131 GADPTKKNRDGNTPLDLVKDGDTDI-QDLLRGDAA 164
Score = 137 bits (349), Expect = 8e-42
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 3/146 (2%)
Query: 31 KDDTNRTPLILAAAAGKLEIVRLLIS-NGADVNAKADGGHSALQYACSKGWKEIAELLIH 89
+ L+ AA AG +E V+ L + + + L +A + E L+
Sbjct: 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63
Query: 90 NHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRL 149
+ A+V+ +D G PLH A S G V +LL+ VN+ D + TPLH A + +
Sbjct: 64 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH--GAVVNVADLWKFTPLHEAAAKGKY 121
Query: 150 TDAKLLVRCGARLDIQNKEKKTPLDL 175
KLL++ GA +N++ TPLDL
Sbjct: 122 EICKLLLQHGADPTKKNRDGNTPLDL 147
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 157 bits (399), Expect = 4e-47
Identities = 42/183 (22%), Positives = 79/183 (43%), Gaps = 15/183 (8%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISN---GADVNA 63
A L+ R +V +L+K + + + R+ L AAA ++ ++++ D+
Sbjct: 171 MLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEE 230
Query: 64 KADGGHSALQYACSKGWKE---IAELLIHNHANVNI--------QDVRGATPLHRAASQG 112
G +AL ++ A+LL+ A V+ + +G T LH AA
Sbjct: 231 LDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVS 290
Query: 113 ITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTP 172
P+VK L+ ++ + + D G TP+ A +E R+ L++ GA ++ + T
Sbjct: 291 NMPIVKYLVGEK-GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTA 349
Query: 173 LDL 175
L
Sbjct: 350 RQL 352
Score = 144 bits (365), Expect = 4e-42
Identities = 40/172 (23%), Positives = 67/172 (38%), Gaps = 17/172 (9%)
Query: 7 HWAALSGREDVVDFLLKNKSP---VDPKDDTNRTPLILAAAAGKLE---IVRLLISNGAD 60
H AA + ++ ++L + ++ D T L++ A + +LL+ GA
Sbjct: 204 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAK 263
Query: 61 VN--------AKADGGHSALQYACSKGWKEIAELLI-HNHANVNIQDVRGATPLHRAASQ 111
V+ ++ G +AL YA I + L+ +N + QD G TP+ AA +
Sbjct: 264 VDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQE 323
Query: 112 GITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLD 163
G VV L+ Q V DA +T A + RC +
Sbjct: 324 GRIEVVMYLIQQ--GASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373
Score = 142 bits (360), Expect = 2e-41
Identities = 43/193 (22%), Positives = 73/193 (37%), Gaps = 22/193 (11%)
Query: 1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISN--- 57
+ +H A +G + + + + + NRT L A+ E LI +
Sbjct: 93 ESPIKLHTEA-AGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAK 150
Query: 58 -----GADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQG 112
GADVNA ++ L A + + L+ A+ I + + LH+AA+
Sbjct: 151 ECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANR 210
Query: 113 ITPVVKLLLTQRLD-IDVNITDAYGNTPLHYACEEK---RLTDAKLLVRCGA-------- 160
++ +L D+ D G T L + ++ AKLLV GA
Sbjct: 211 DFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA 270
Query: 161 RLDIQNKEKKTPL 173
R D + + +T L
Sbjct: 271 RKDSEKYKGRTAL 283
Score = 142 bits (360), Expect = 2e-41
Identities = 32/179 (17%), Positives = 57/179 (31%), Gaps = 15/179 (8%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+G + + DF N + + L AAG I + ++
Sbjct: 65 NPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLH-TEAAGSYAITEPITRESVNIIDP- 122
Query: 66 DGGHSALQYACSKGWKEIAELLIHNH--------ANVNIQDVRGATPLHRAASQGITPVV 117
+ L + S E +E LI + A+VN D TPL A +V
Sbjct: 123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLV 182
Query: 118 KLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLV---RCGARLDIQNKEKKTPL 173
L+ D I + + LH A + ++ + ++ ++ T L
Sbjct: 183 AYLMKA--GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTAL 239
Score = 101 bits (253), Expect = 8e-26
Identities = 23/168 (13%), Positives = 50/168 (29%), Gaps = 27/168 (16%)
Query: 23 KNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKE 82
+ +++ L+ A+ G ++ R N G
Sbjct: 25 EKNRKNHQSITSSQHSLLEASYDGYIKRQR---------NELQHYSLYPNPQGYGNGNDF 75
Query: 83 IAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHY 142
+ + N + LH A G + + + + +++ + T LH+
Sbjct: 76 LGDFNHTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRE--SVNII-DPRHNRTVLHW 131
Query: 143 ACEEKRL--------TDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLA 182
+AK + GA ++ + ++ TPL LA
Sbjct: 132 IASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPL------MLA 173
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 152 bits (387), Expect = 9e-47
Identities = 45/187 (24%), Positives = 81/187 (43%), Gaps = 19/187 (10%)
Query: 7 HWAALSGR----EDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVN 62
H A + +V+ + + + ++ +++ +TPL LA + EI L+ G D
Sbjct: 13 HLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE 72
Query: 63 AKADGGHSALQYACSKGWKEIAELLI------HNHANVNIQDVRGATPLHRAASQGITPV 116
+ G++ L AC +G +L H H+ + + G T LH A+ G +
Sbjct: 73 LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGI 132
Query: 117 VKLLLTQRLDIDVNITD-AYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
V+LL++ DVN + G T LH A + + LL++CGA ++ + +P
Sbjct: 133 VELLVSL--GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPY-- 188
Query: 176 LPLPHLA 182
L
Sbjct: 189 ----QLT 191
Score = 150 bits (380), Expect = 9e-46
Identities = 44/176 (25%), Positives = 65/176 (36%), Gaps = 9/176 (5%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD------ 60
H A ++ + ++ + LL + +D TPL LA G L V +L +
Sbjct: 50 HLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSI 109
Query: 61 VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD-VRGATPLHRAASQGITPVVKL 119
+ A GH+ L A G+ I ELL+ A+VN Q+ G T LH A +V L
Sbjct: 110 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 169
Query: 120 LLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
LL DVN G +P + L + E +
Sbjct: 170 LLKC--GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESY 223
Score = 135 bits (343), Expect = 3e-40
Identities = 44/161 (27%), Positives = 67/161 (41%), Gaps = 15/161 (9%)
Query: 31 KDDTNRTPLILAAAAG----KLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAEL 86
+ + L LA +E++R + + A +N + + + L A EIAE
Sbjct: 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63
Query: 87 LIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDI----DVNITDAYGNTPLHY 142
L+ + ++D RG TPLH A QG V +L + T+ G+T LH
Sbjct: 64 LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 123
Query: 143 ACEEKRLTDAKLLVRCGARLDIQNKEK-KTPLDLLPLPHLA 182
A L +LLV GA ++ Q +T L HLA
Sbjct: 124 ASIHGYLGIVELLVSLGADVNAQEPCNGRTAL------HLA 158
Score = 130 bits (329), Expect = 5e-38
Identities = 39/153 (25%), Positives = 60/153 (39%), Gaps = 9/153 (5%)
Query: 7 HWAALSGREDVVDFLLKN------KSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
H A G V L ++ S + + T L LA+ G L IV LL+S GAD
Sbjct: 83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD 142
Query: 61 VNAKADG-GHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKL 119
VNA+ G +AL A ++ LL+ A+VN +G +P + T + +
Sbjct: 143 VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQ 202
Query: 120 LLTQRLDIDVNITDAYGNTPLHYACEEKRLTDA 152
L +L ++ Y E +
Sbjct: 203 LG--QLTLENLQMLPESEDEESYDTESEFTEFT 233
Score = 96.9 bits (242), Expect = 4e-25
Identities = 36/130 (27%), Positives = 48/130 (36%), Gaps = 18/130 (13%)
Query: 63 AKADGGHSALQYACSKGWK----EIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVK 118
+ G S L A K E+ + + A +N Q+ TPLH A + +
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62
Query: 119 LLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA------RLDIQNKEKKTP 172
LL D + D GNTPLH ACE+ L +L + L N T
Sbjct: 63 ALLGA--GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC 120
Query: 173 LDLLPLPHLA 182
L HLA
Sbjct: 121 L------HLA 124
Score = 77.2 bits (191), Expect = 9e-18
Identities = 15/79 (18%), Positives = 22/79 (27%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
H A D+V LLK + V+ +P L I + L +
Sbjct: 156 HLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP 215
Query: 67 GGHSALQYACSKGWKEIAE 85
Y + E E
Sbjct: 216 ESEDEESYDTESEFTEFTE 234
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 151 bits (383), Expect = 2e-46
Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 6/170 (3%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+ A + D L + + D + T + G+ ++ V +A
Sbjct: 16 VFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLI-----PSNYVAEQA 70
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
+ + L A +G + N VN D G+T L+ A G +V++L TQ
Sbjct: 71 ESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQP- 129
Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
+I++N + G+T LH A + +LL+ GAR D++N EKK D+
Sbjct: 130 NIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDM 179
Score = 150 bits (382), Expect = 3e-46
Identities = 40/168 (23%), Positives = 64/168 (38%), Gaps = 8/168 (4%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
GR ++ + + ++ PL AA G L +R + N VN
Sbjct: 50 WKGTSKGRTGLIPSNYVAE-----QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDK 104
Query: 67 GGHSALQYACSKGWKEIAELLI-HNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
G +AL +AC G K+I E+L + +N Q+ G T LH AA +G +V+LLL +
Sbjct: 105 AGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK-- 162
Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
++ + A + K A + N E
Sbjct: 163 GARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDD 210
Score = 145 bits (368), Expect = 4e-44
Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 3/141 (2%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISN-GADVNAKA 65
H AA G + L N+ V+ D T L A G +IV +L + ++N +
Sbjct: 78 HEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQN 137
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
G +AL A KG+ +I +LL+ A +++++ A + ++K
Sbjct: 138 KLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGT-- 195
Query: 126 DIDVNITDAYGNTPLHYACEE 146
D +++A + E
Sbjct: 196 DAVRTLSNAEDYLDDEDSDLE 216
Score = 122 bits (308), Expect = 4e-35
Identities = 32/139 (23%), Positives = 49/139 (35%), Gaps = 8/139 (5%)
Query: 36 RTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVN 95
+ + A + L D+ D + SKG + V
Sbjct: 13 QVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKG-----RTGLIPSNYVA 67
Query: 96 IQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLL 155
Q PLH AA +G ++ L R + VN D G+T L++AC ++L
Sbjct: 68 EQAESIDNPLHEAAKRGNLSWLRECLDNR--VGVNGLDKAGSTALYWACHGGHKDIVEML 125
Query: 156 V-RCGARLDIQNKEKKTPL 173
+ L+ QNK T L
Sbjct: 126 FTQPNIELNQQNKLGDTAL 144
Score = 112 bits (282), Expect = 3e-31
Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 1/107 (0%)
Query: 7 HWAALSGREDVVDFLLKNKSP-VDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+WA G +D+V+ L + ++ ++ T L AA G +IV+LL++ GA + +
Sbjct: 111 YWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRN 170
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQG 112
A A + + + A + + + +
Sbjct: 171 IEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEH 217
Score = 88.5 bits (220), Expect = 4e-22
Identities = 16/112 (14%), Positives = 32/112 (28%), Gaps = 7/112 (6%)
Query: 62 NAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL 121
G + A + L ++ T + S+G T ++
Sbjct: 6 PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIP--- 62
Query: 122 TQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
V + PLH A + L+ + + ++ +K T L
Sbjct: 63 ----SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTAL 110
Score = 45.7 bits (109), Expect = 2e-06
Identities = 10/81 (12%), Positives = 20/81 (24%), Gaps = 14/81 (17%)
Query: 102 ATPLHRAASQGITPVVKLLLTQRLDI---------DVNITDAYGNTPLHYACEEKRLTDA 152
+ P + G V + L T D+ +T +
Sbjct: 2 SKPPPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSK-----G 56
Query: 153 KLLVRCGARLDIQNKEKKTPL 173
+ + + Q + PL
Sbjct: 57 RTGLIPSNYVAEQAESIDNPL 77
Score = 32.2 bits (74), Expect = 0.064
Identities = 1/42 (2%), Positives = 8/42 (19%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKL 48
A + ++ + + + +
Sbjct: 178 DMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHH 219
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 154 bits (392), Expect = 3e-46
Identities = 51/160 (31%), Positives = 74/160 (46%), Gaps = 2/160 (1%)
Query: 5 LIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK 64
L+ A E ++ L D TPL LAA ++ IV+LL+ +GADV+AK
Sbjct: 28 LLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK 87
Query: 65 ADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQR 124
GG L ACS G E+ ELL+ + A VN D+ TPLH AAS+ V LLL+
Sbjct: 88 DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH- 146
Query: 125 LDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDI 164
D + + +G + + A + + + L
Sbjct: 147 -GADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQA 185
Score = 146 bits (371), Expect = 4e-43
Identities = 42/193 (21%), Positives = 74/193 (38%), Gaps = 26/193 (13%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIV--------------- 51
H AA R +V LL + + + ++ + +A E +
Sbjct: 129 HEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAARE 188
Query: 52 ------RLLISNGADVNAKADGGHSALQYACSKGW---KEIAELLIHNHANVNIQDVRGA 102
+ ++ + +AL A + K++AELL+ ANVN ++
Sbjct: 189 ADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFM 248
Query: 103 TPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARL 162
TPLH AA + V+++L +N D+ G T LH A L +LL+ G+
Sbjct: 249 TPLHVAAERAHNDVMEVLHKH--GAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDP 306
Query: 163 DIQNKEKKTPLDL 175
I + + T +
Sbjct: 307 SIISLQGFTAAQM 319
Score = 146 bits (370), Expect = 5e-43
Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 3/156 (1%)
Query: 21 LLKNKSPVDPKDDTNRTPLILAAAAG-KLEIVRLLISNGADVNAKADGGHSALQYACSKG 79
L + + + L+ AA +G + +++ LL + +A + L A
Sbjct: 10 LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYN 69
Query: 80 WKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTP 139
I +LL+ + A+V+ +D G PLH A S G V +LLL VN D + TP
Sbjct: 70 RVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKH--GACVNAMDLWQFTP 127
Query: 140 LHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
LH A + R+ LL+ GA + N K+ +D+
Sbjct: 128 LHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDM 163
Score = 130 bits (330), Expect = 4e-37
Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 12/143 (8%)
Query: 7 HWAALSG---REDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNA 63
H A S R+ V + LL+ + V+ K+ TPL +AA +++ +L +GA +NA
Sbjct: 216 HCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNA 275
Query: 64 KADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQ 123
G +AL A G + LL+ ++ +I ++G T V+ +L++
Sbjct: 276 LDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNE-----AVQQILSE 330
Query: 124 RLDIDVNITDAYGNTPLHYACEE 146
+ +D + L A +
Sbjct: 331 STPM--RTSD--VDYRLLEASKA 349
Score = 121 bits (307), Expect = 1e-33
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 3/126 (2%)
Query: 49 EIVRLLISNGADVNAKAD-GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHR 107
+ L A + L+ A S +++ LL + N + D R +TPLH
Sbjct: 5 KSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHL 64
Query: 108 AASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNK 167
AA +V+LLL DV+ D G PLH AC +LL++ GA ++ +
Sbjct: 65 AAGYNRVRIVQLLLQH--GADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDL 122
Query: 168 EKKTPL 173
+ TPL
Sbjct: 123 WQFTPL 128
Score = 106 bits (266), Expect = 1e-27
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
H AA DV++ L K+ + ++ D +T L AA AG L+ RLL+S G+D + +
Sbjct: 252 HVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISL 311
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQG 112
G +A Q E + ++ + DV L A+ G
Sbjct: 312 QGFTAAQMG-----NEAVQQILSESTPMRTSDVDY--RLLEASKAG 350
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 148 bits (376), Expect = 5e-46
Identities = 43/151 (28%), Positives = 64/151 (42%), Gaps = 5/151 (3%)
Query: 7 HWAALSGREDVVDFLL-KNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
AA G V LL + D + +T L G I L+ GA N +
Sbjct: 7 SGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQ-VMMFGSTAIALELLKQGASPNVQD 65
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
G S + A G+ + ++L+ + A+VN+ D GA P+H A +G T VV L +
Sbjct: 66 TSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-- 123
Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLV 156
D++ DA G TPL A + +L
Sbjct: 124 -SDLHRRDARGLTPLELALQRGAQDLVDILQ 153
Score = 132 bits (336), Expect = 4e-40
Identities = 45/140 (32%), Positives = 64/140 (45%), Gaps = 5/140 (3%)
Query: 37 TPLILAAAAGKLEIVR-LLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVN 95
L AAA G ++ VR LL +A G +ALQ G IA L+ A+ N
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQGASPN 62
Query: 96 IQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLL 155
+QD G +P+H AA G +K+L+ DVN+ D G P+H A +E L
Sbjct: 63 VQDTSGTSPVHDAARTGFLDTLKVLVEH--GADVNVPDGTGALPIHLAVQEGHTAVVSFL 120
Query: 156 VRCGARLDIQNKEKKTPLDL 175
+ L ++ TPL+L
Sbjct: 121 AA-ESDLHRRDARGLTPLEL 139
Score = 127 bits (321), Expect = 9e-38
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
G + LLK + + +D + +P+ AA G L+ +++L+ +GADVN
Sbjct: 41 QVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG 99
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQ 123
G + A +G + L ++++ +D RG TPL A +G +V +L
Sbjct: 100 TGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155
Score = 92.1 bits (230), Expect = 3e-24
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 10/113 (8%)
Query: 71 ALQYACSKG-WKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDV 129
L A ++G +E+ LL + + + G T L G T + LL Q
Sbjct: 5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQ-VMMFGSTAIALELLKQ--GASP 61
Query: 130 NITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLA 182
N+ D G +P+H A L K+LV GA +++ + P+ HLA
Sbjct: 62 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPI------HLA 108
Score = 64.4 bits (158), Expect = 1e-13
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 100 RGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCG 159
R L AA++G V+ LL + + + + +G T L A L++ G
Sbjct: 1 RAGDRLSGAAARGDVQEVRRLLHRE-LVHPDALNRFGKTALQVMM-FGSTAIALELLKQG 58
Query: 160 ARLDIQNKEKKTPL 173
A ++Q+ +P+
Sbjct: 59 ASPNVQDTSGTSPV 72
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 148 bits (375), Expect = 1e-45
Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 7/167 (4%)
Query: 1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
+ G + V + TP AA + + L+ D
Sbjct: 13 EGAMEYLIEWKDGHSPSWVPSSYIAADVVSEY---ETPWWTAARKADEQALSQLLE-DRD 68
Query: 61 VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVR-GATPLHRAASQGITPVVKL 119
V+A + G +AL + G + LL A+++ +D+R G T LH AA VV+
Sbjct: 69 VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 128
Query: 120 LLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQN 166
L+ D+ + D G T L A E + T ++ G R+ ++
Sbjct: 129 LVEL--GADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK 173
Score = 133 bits (338), Expect = 5e-40
Identities = 32/146 (21%), Positives = 53/146 (36%), Gaps = 7/146 (4%)
Query: 31 KDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHN 90
++ G ADV ++ + A K ++ L+
Sbjct: 10 TAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALSQLLE- 65
Query: 91 HANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDA-YGNTPLHYACEEKRL 149
+V+ D G T L A G V+LL D++ D G T LH A R
Sbjct: 66 DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA--GADLDHRDMRGGLTALHMAAGYVRP 123
Query: 150 TDAKLLVRCGARLDIQNKEKKTPLDL 175
+ LV GA ++++++ T L+L
Sbjct: 124 EVVEALVELGADIEVEDERGLTALEL 149
Score = 104 bits (263), Expect = 8e-29
Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTN-RTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+ A G + V L + + +D +D T L +AA + E+V L+ GAD+ +
Sbjct: 81 LFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVED 140
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDV 99
+ G +AL+ A + + ++ V
Sbjct: 141 ERGLTALELAREILKTTPKGNPMQFGRRIGLEKV 174
Score = 86.0 bits (214), Expect = 2e-21
Identities = 29/127 (22%), Positives = 41/127 (32%), Gaps = 13/127 (10%)
Query: 57 NGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPV 116
N + A G G + A+V TP AA +
Sbjct: 3 NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQA 59
Query: 117 VKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQN-KEKKTPLDL 175
+ LL D DV+ D G T L + +LL GA LD ++ + T L
Sbjct: 60 LSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTAL-- 114
Query: 176 LPLPHLA 182
H+A
Sbjct: 115 ----HMA 117
Score = 43.3 bits (103), Expect = 1e-05
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 16/67 (23%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLE----------------I 50
H AA R +VV+ L++ + ++ +D+ T L LA K +
Sbjct: 115 HMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKV 174
Query: 51 VRLLISN 57
+ +L
Sbjct: 175 INVLEGQ 181
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 150 bits (382), Expect = 1e-45
Identities = 42/184 (22%), Positives = 59/184 (32%), Gaps = 17/184 (9%)
Query: 7 HWAALSGREDVVDFLLKN-------------KSPVDPKDDTNRTPLILAAAA-GKLEIVR 52
H A LL+ D DT+ P + + + E
Sbjct: 83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEP 142
Query: 53 LLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD-VRGATPLHRAASQ 111
+ A+ GH+ L A E+ LL A++N + G TPLH A
Sbjct: 143 RDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEA 202
Query: 112 GITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKT 171
V++LLL D G TPL A A+LL GA +K +
Sbjct: 203 QAASVLELLLKA--GADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLS 260
Query: 172 PLDL 175
P
Sbjct: 261 PCSS 264
Score = 148 bits (377), Expect = 9e-45
Identities = 48/193 (24%), Positives = 69/193 (35%), Gaps = 24/193 (12%)
Query: 7 HWAALSGREDVVDFLLK---NKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNA 63
H A + E +DFLL +D ++D +T L LAA G+ V L + GA V
Sbjct: 14 HLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLV 73
Query: 64 KADGGHSALQYACSKGWKEIAELLIHNHANVNIQDV-------------RGATPLHRAAS 110
GGH+AL AC A +L+ + P +
Sbjct: 74 AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQ 133
Query: 111 QGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEK- 169
+ + + + G+TPLH A K +LL GA L+
Sbjct: 134 PNPENEEEPRDEDW-RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCG 192
Query: 170 KTPLDLLPLPHLA 182
+TPL HLA
Sbjct: 193 RTPL------HLA 199
Score = 141 bits (357), Expect = 9e-42
Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 3/143 (2%)
Query: 5 LIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK 64
+ + + + ++ ++ TPL +A E+VRLL GAD+N
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP 187
Query: 65 -ADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQ 123
G + L A + ELL+ A+ + G TPL A + + +LL
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAH 247
Query: 124 RLDIDVNITDAYGNTPLHYACEE 146
+P + +
Sbjct: 248 --GAPEPEDGGDKLSPCSSSGSD 268
Score = 126 bits (320), Expect = 3e-36
Identities = 34/167 (20%), Positives = 54/167 (32%), Gaps = 21/167 (12%)
Query: 31 KDDTNRTPLILAAAAGKLEIVRLLISNGAD---VNAKADGGHSALQYACSKGWKEIAELL 87
+ T L LA + L+ A ++ + D G +AL A G E L
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64
Query: 88 IHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAY-----------G 136
A V + + G T LH A +LL R + +D Y
Sbjct: 65 YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS 124
Query: 137 NTPLHYACEEKRLTD-AKLLVRCGARLDIQNKEKKTPLDLLPLPHLA 182
+ P + + +L+ +N + TPL H+A
Sbjct: 125 HAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL------HVA 165
Score = 123 bits (311), Expect = 7e-35
Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 1/116 (0%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKD-DTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
H A + ++V L + ++ + RTPL LA A ++ LL+ GAD A+
Sbjct: 163 HVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARM 222
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL 121
GG + L A + +A LL + A +P + S +
Sbjct: 223 YGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGD 278
Score = 96.1 bits (240), Expect = 1e-24
Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 5/116 (4%)
Query: 61 VNAKADGGHSALQYACSKGWKEIAELLIHNHAN---VNIQDVRGATPLHRAASQGITPVV 117
+ G +AL A + + L+ A +++Q+ G T LH AA G V
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 118 KLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
+ L V + + G+T LH AC + T A +L++ +
Sbjct: 62 EKLYAA--GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQ 115
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 149 bits (378), Expect = 1e-44
Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 4/168 (2%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
G E ++ + + K D + + A ++G E V L+ GAD+N
Sbjct: 13 QLKRWIGSETDLEPPVVKRKKTKVKFD-DGAVFLAACSSGDTEEVLRLLERGADINYANV 71
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
G +AL AC ++ + L+ N AN+N D G PLH AAS G + + L++Q
Sbjct: 72 DGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQ--G 129
Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLV-RCGARLDIQNKEKKTPL 173
V ++ G+TPL A EE + V R G ++ KE++ +
Sbjct: 130 AHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM 177
Score = 147 bits (374), Expect = 4e-44
Identities = 43/193 (22%), Positives = 79/193 (40%), Gaps = 27/193 (13%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
A SG + V LL+ + ++ + T L A +++V+ L+ NGA++N +
Sbjct: 45 LAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN 104
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
G L A S G+ +IAE LI A+V + G TPL A + + +++ + ++
Sbjct: 105 EGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ-G 163
Query: 127 IDVNITDAYGNT--------------------------PLHYACEEKRLTDAKLLVRCGA 160
+D+ LH A + KLL++
Sbjct: 164 VDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY 223
Query: 161 RLDIQNKEKKTPL 173
++I++ + TPL
Sbjct: 224 DVNIKDYDGWTPL 236
Score = 145 bits (368), Expect = 4e-43
Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 10/170 (5%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLIS-NGADVNAKA 65
H AA G D+ ++L+ + V + TPL +A E+++ ++ G D+ A
Sbjct: 111 HAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEA-- 168
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
A + ++ + L H N G T LH AA++G T V+KLL+ R
Sbjct: 169 -----ARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR- 222
Query: 126 DIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
DVNI D G TPLH A + ++LV ++ NK +T D+
Sbjct: 223 -YDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDV 271
Score = 134 bits (340), Expect = 5e-39
Identities = 41/145 (28%), Positives = 58/145 (40%), Gaps = 3/145 (2%)
Query: 31 KDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHN 90
D + L G + + K D G + ACS G E L+
Sbjct: 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRLLER 62
Query: 91 HANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLT 150
A++N +V G T LH+A +VK L+ ++N D G PLH A L
Sbjct: 63 GADINYANVDGLTALHQACIDDNVDMVKFLVEN--GANINQPDNEGWIPLHAAASCGYLD 120
Query: 151 DAKLLVRCGARLDIQNKEKKTPLDL 175
A+ L+ GA + N E TPLD+
Sbjct: 121 IAEYLISQGAHVGAVNSEGDTPLDI 145
Score = 132 bits (335), Expect = 3e-38
Identities = 36/166 (21%), Positives = 63/166 (37%), Gaps = 12/166 (7%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
A E+++ + + + + + L S + A
Sbjct: 144 DIAEEEAMEELLQNEV------NRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAK 197
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
G +AL A +KG+ E+ +LLI +VNI+D G TPLH AA G ++L+
Sbjct: 198 SGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN--L 255
Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTP 172
D+ + G T A E+ L + ++ + EK+
Sbjct: 256 CDMEAVNKVGQTAFDVADEDIL----GYLEELQKKQNLLHSEKREK 297
Score = 98.0 bits (245), Expect = 4e-25
Identities = 27/113 (23%), Positives = 40/113 (35%), Gaps = 3/113 (2%)
Query: 61 VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
+ Q G + E + ++ G A S G T V L
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRL 59
Query: 121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
L + D+N + G T LH AC + + K LV GA ++ + E PL
Sbjct: 60 LER--GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPL 110
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 144 bits (364), Expect = 2e-43
Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 2/173 (1%)
Query: 1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
+ ++ + A +++ + +L +KS D +RT L A +AG EIV L+ G
Sbjct: 6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65
Query: 61 VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
VN K D G S L A S G EI + L+ A+VN + G TPLH AAS+ + +L
Sbjct: 66 VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125
Query: 121 LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
L + + D Y T +H A + L +L+ A +IQ+ E TPL
Sbjct: 126 LEG--GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPL 176
Score = 135 bits (341), Expect = 4e-40
Identities = 79/182 (43%), Positives = 110/182 (60%), Gaps = 8/182 (4%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
HWA +G ++V+FLL+ PV+ KDD +PL +AA+AG EIV+ L+ GA VNA
Sbjct: 45 HWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQ 104
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
G + L YA SK EIA +L+ AN + +D AT +HRAA++G +V +LL
Sbjct: 105 NGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY--K 162
Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALT 186
NI D GNTPLH AC+E+R+ +AK LV GA + I+NKE+KTPL +A+
Sbjct: 163 ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPL------QVAKGGL 216
Query: 187 EI 188
+
Sbjct: 217 GL 218
Score = 129 bits (326), Expect = 8e-38
Identities = 45/143 (31%), Positives = 67/143 (46%), Gaps = 2/143 (1%)
Query: 31 KDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHN 90
+N LA + E+ ++++ + +AL +ACS G EI E L+
Sbjct: 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL 62
Query: 91 HANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLT 150
VN +D G +PLH AAS G +VK LL + VN + G TPLHYA + R
Sbjct: 63 GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK--GAHVNAVNQNGCTPLHYAASKNRHE 120
Query: 151 DAKLLVRCGARLDIQNKEKKTPL 173
A +L+ GA D ++ T +
Sbjct: 121 IAVMLLEGGANPDAKDHYDATAM 143
Score = 113 bits (285), Expect = 1e-31
Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 4/158 (2%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
H AA +G +++V LL + V+ + TPL AA+ + EI +L+ GA+ +AK
Sbjct: 78 HIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH 137
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
+A+ A +KG ++ +L+ A+ NIQD G TPLH A + K L+TQ
Sbjct: 138 YDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ--G 195
Query: 127 IDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDI 164
+ I + TPL A L + G +
Sbjct: 196 ASIYIENKEEKTPLQVAKGGLGL--ILKRLAEGEEASM 231
Score = 93.4 bits (232), Expect = 8e-24
Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 2/129 (1%)
Query: 1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
N +H+AA R ++ LL+ + D KD + T + AAA G L++V +L+ A
Sbjct: 105 NGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS 164
Query: 61 VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
N + G++ L AC + E A+ L+ A++ I++ TPL A G ++
Sbjct: 165 TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKR 222
Query: 121 LTQRLDIDV 129
L + + +
Sbjct: 223 LAEGEEASM 231
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 140 bits (356), Expect = 3e-43
Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 2/130 (1%)
Query: 31 KDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHN 90
+ T L +A+ G + V L+ NG+D N K G + L AC+ G ++ ELL+ +
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65
Query: 91 HANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLT 150
A VN + +PLH AA G +VKLLL+ N + +G P+ Y +E +
Sbjct: 66 KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY--GASRNAVNIFGLRPVDYTDDESMKS 123
Query: 151 DAKLLVRCGA 160
L + +
Sbjct: 124 LLLLPEKNES 133
Score = 134 bits (339), Expect = 7e-41
Identities = 34/115 (29%), Positives = 55/115 (47%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
H A++ G V++LL+N S + KD TPL A G L++V LL+ + A VN
Sbjct: 15 HIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGY 74
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL 121
S L A G +I +LL+ A+ N ++ G P+ + + ++ L
Sbjct: 75 QNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPE 129
Score = 114 bits (288), Expect = 5e-33
Identities = 39/118 (33%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 58 GADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVV 117
G D G + L A KG E L+ N ++ N++D G TPLH A + G VV
Sbjct: 1 GIDPFTNHRG-ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59
Query: 118 KLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
+LLL VN T ++PLH A + + KLL+ GA + N P+D
Sbjct: 60 ELLLQH--KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDY 115
Score = 102 bits (256), Expect = 3e-28
Identities = 29/87 (33%), Positives = 44/87 (50%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
H A G VV+ LL++K+ V+ N +PL AA G ++IV+LL+S GA NA
Sbjct: 48 HEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNI 107
Query: 67 GGHSALQYACSKGWKEIAELLIHNHAN 93
G + Y + K + L N ++
Sbjct: 108 FGLRPVDYTDDESMKSLLLLPEKNESS 134
Score = 57.8 bits (141), Expect = 3e-11
Identities = 11/57 (19%), Positives = 21/57 (36%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNA 63
H AA +G D+V LL + + + P+ ++ L N + +
Sbjct: 81 HDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSSAS 137
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 139 bits (354), Expect = 7e-43
Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 9/149 (6%)
Query: 28 VDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELL 87
+ + L AAA G++E VR L+ GA+ NA G +Q G +AELL
Sbjct: 5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM-MMGSARVAELL 63
Query: 88 IHNHANVNIQDVRGAT-PLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEE 146
+ + A N D T P+H AA +G + +L +++ DA+G P+ A E
Sbjct: 64 LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAG--ARLDVRDAWGRLPVDLAEEL 121
Query: 147 KRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
A+ L +
Sbjct: 122 GHRDVARYLRAAAG-----GTRGSNHARI 145
Score = 131 bits (331), Expect = 3e-39
Identities = 28/141 (19%), Positives = 51/141 (36%), Gaps = 9/141 (6%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA- 65
AA GR + V LL+ + + + R P+ + G + LL+ +GA+ N
Sbjct: 17 ATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQV-MMMGSARVAELLLLHGAEPNCADP 75
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
+ A +G+ + +L A ++++D G P+ A G V + L
Sbjct: 76 ATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAG 135
Query: 126 DIDVNITDAYGNTPLHYACEE 146
G+ E
Sbjct: 136 GTR-------GSNHARIDAAE 149
Score = 105 bits (265), Expect = 2e-29
Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 7/108 (6%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRT-PLILAAAAGKLEIVRLLISNGADVNAK 64
I + G V + LL + + + D T P+ AA G L+ + +L GA ++ +
Sbjct: 49 IQVMMM-GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVR 107
Query: 65 ADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQG 112
G + A G +++A L G+ A++G
Sbjct: 108 DAWGRLPVDLAEELGHRDVARYLRAAAGGTR-----GSNHARIDAAEG 150
Score = 102 bits (256), Expect = 4e-28
Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 4/118 (3%)
Query: 59 ADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVK 118
+ + L A ++G E L+ AN N + G P+ G V +
Sbjct: 3 PAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQ-VMMMGSARVAE 61
Query: 119 LLLTQRLDIDVNITDAYGNT-PLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
LLL + N D T P+H A E L +L R GARLD+++ + P+DL
Sbjct: 62 LLLLHGA--EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL 117
Score = 35.5 bits (83), Expect = 0.004
Identities = 9/45 (20%), Positives = 13/45 (28%), Gaps = 5/45 (11%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIV 51
A G DV +L + + AA G +I
Sbjct: 116 DLAEELGHRDVARYLRAAAGGTRGSN-----HARIDAAEGPSDIP 155
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 139 bits (352), Expect = 1e-42
Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 4/134 (2%)
Query: 28 VDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELL 87
+ ++ L AAA G++E VR L+ GAD NA G +Q G ++AELL
Sbjct: 5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVM-MMGSAQVAELL 63
Query: 88 IHNHANVNIQDVRGAT-PLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEE 146
+ + A N D T P+H AA +G + +L +++ DA+G P+ A E+
Sbjct: 64 LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA--GARLDVCDAWGRLPVDLAEEQ 121
Query: 147 KRLTDAKLLVRCGA 160
A+ L
Sbjct: 122 GHRDIARYLHAATG 135
Score = 126 bits (318), Expect = 1e-37
Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 2/118 (1%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA- 65
AA G+ + V LL+ + + + R P+ + G ++ LL+ +GA+ N
Sbjct: 17 ATAAARGQVETVRQLLEAGADPNALNRFGRRPIQV-MMMGSAQVAELLLLHGAEPNCADP 75
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQ 123
+ A +G+ + +L A +++ D G P+ A QG + + L
Sbjct: 76 ATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133
Score = 111 bits (281), Expect = 5e-32
Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 4/119 (3%)
Query: 58 GADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVV 117
++ + L A ++G E L+ A+ N + G P+ G V
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQ-VMMMGSAQVA 60
Query: 118 KLLLTQRLDIDVNITDAYGNT-PLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
+LLL + N D T P+H A E L +L R GARLD+ + + P+DL
Sbjct: 61 ELLLLH--GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDL 117
Score = 91.0 bits (227), Expect = 5e-24
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRT-PLILAAAAGKLEIVRLLISNGADVNAK 64
I G V + LL + + + D T P+ AA G L+ + +L GA ++
Sbjct: 49 IQVMM-MGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVC 107
Query: 65 ADGGHSALQYACSKGWKEIAELLIHNHAN 93
G + A +G ++IA L +
Sbjct: 108 DAWGRLPVDLAEEQGHRDIARYLHAATGD 136
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 138 bits (351), Expect = 1e-42
Identities = 61/125 (48%), Positives = 71/125 (56%), Gaps = 2/125 (1%)
Query: 36 RTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVN 95
RTPL LAA G LE+V+LL+ GADVNAK G + L A G E+ +LL+ A+VN
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 96 IQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLL 155
+D G TPLH AA G VVKLLL DVN D G TPLH A L KLL
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 156 VRCGA 160
+ GA
Sbjct: 121 LEAGA 125
Score = 133 bits (337), Expect = 1e-40
Identities = 56/115 (48%), Positives = 70/115 (60%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
H AA +G +VV LL+ + V+ KD RTPL LAA G LE+V+LL+ GADVNAK
Sbjct: 7 HLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK 66
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL 121
G + L A G E+ +LL+ A+VN +D G TPLH AA G VVKLLL
Sbjct: 67 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Score = 102 bits (256), Expect = 2e-28
Identities = 45/106 (42%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Query: 68 GHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDI 127
G + L A G E+ +LL+ A+VN +D G TPLH AA G VVKLLL
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG--A 59
Query: 128 DVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
DVN D G TPLH A L KLL+ GA ++ ++K +TPL
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 105
Score = 99.0 bits (248), Expect = 4e-27
Identities = 39/86 (45%), Positives = 51/86 (59%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
H AA +G +VV LL+ + V+ KD RTPL LAA G LE+V+LL+ GADVNAK
Sbjct: 40 HLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK 99
Query: 67 GGHSALQYACSKGWKEIAELLIHNHA 92
G + L A G E+ +LL+ A
Sbjct: 100 NGRTPLHLAARNGHLEVVKLLLEAGA 125
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 141 bits (359), Expect = 1e-42
Identities = 38/168 (22%), Positives = 64/168 (38%), Gaps = 7/168 (4%)
Query: 1 NERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGAD 60
+ G + V + TP AA + + L+ D
Sbjct: 14 EGAMEYLIEWKDGHSPSWVPSSYIAADVVSEY---ETPWWTAARKADEQALSQLLE-DRD 69
Query: 61 VNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVR-GATPLHRAASQGITPVVKL 119
V+A + G +AL + G + LL A+++ +D+R G T LH AA VV+
Sbjct: 70 VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 129
Query: 120 LLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNK 167
L+ D+ + D G T L A E + T ++ G R+ ++
Sbjct: 130 LVEL--GADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKV 175
Score = 140 bits (354), Expect = 1e-41
Identities = 41/188 (21%), Positives = 67/188 (35%), Gaps = 24/188 (12%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK-A 65
AA E + LL+++ VD D+ RT L+ A G + VRLL GAD++ +
Sbjct: 50 WTAARKADEQALSQLLEDRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDM 108
Query: 66 DGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRL 125
GG +AL A E+ E L+ A++ ++D RG T L A T +
Sbjct: 109 RGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGR 168
Query: 126 DI--------------------DVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQ 165
I ++ G + + + A +
Sbjct: 169 RIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVA--EDV 226
Query: 166 NKEKKTPL 173
K+ + L
Sbjct: 227 AKDYEDGL 234
Score = 129 bits (326), Expect = 1e-37
Identities = 32/146 (21%), Positives = 53/146 (36%), Gaps = 7/146 (4%)
Query: 31 KDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHN 90
++ G ADV ++ + A K ++ L+
Sbjct: 11 TAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALSQLLE- 66
Query: 91 HANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDA-YGNTPLHYACEEKRL 149
+V+ D G T L A G V+LL D++ D G T LH A R
Sbjct: 67 DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA--GADLDHRDMRGGLTALHMAAGYVRP 124
Query: 150 TDAKLLVRCGARLDIQNKEKKTPLDL 175
+ LV GA ++++++ T L+L
Sbjct: 125 EVVEALVELGADIEVEDERGLTALEL 150
Score = 82.3 bits (204), Expect = 1e-19
Identities = 26/113 (23%), Positives = 36/113 (31%), Gaps = 7/113 (6%)
Query: 62 NAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL 121
+ A G G + A+V TP AA + + LL
Sbjct: 9 SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQALSQLL 65
Query: 122 TQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKE-KKTPL 173
D DV+ D G T L + +LL GA LD ++ T L
Sbjct: 66 E---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTAL 115
Score = 55.7 bits (135), Expect = 6e-10
Identities = 13/85 (15%), Positives = 23/85 (27%), Gaps = 6/85 (7%)
Query: 89 HNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKR 148
N + GA G +P D+ + TP A +
Sbjct: 3 VNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV-----VSEYETPWWTAARKAD 57
Query: 149 LTDAKLLVRCGARLDIQNKEKKTPL 173
L+ +D ++ +T L
Sbjct: 58 EQALSQLLE-DRDVDAVDENGRTAL 81
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 141 bits (358), Expect = 1e-42
Identities = 44/187 (23%), Positives = 72/187 (38%), Gaps = 26/187 (13%)
Query: 7 HWAALSGREDVVDFLLKN-----KSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADV 61
H AAL + L++ P+ + +T L +A + +VR L++ GA V
Sbjct: 42 HIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASV 101
Query: 62 NAKADG-------------GHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRA 108
+A+A G G L +A G +EI LLI + A++ QD G T LH
Sbjct: 102 SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHIL 161
Query: 109 ASQG----ITPVVKLLLTQRLDID----VNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
Q + LLL+ + + G TP A E + + L++
Sbjct: 162 ILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRK 221
Query: 161 RLDIQNK 167
+ +
Sbjct: 222 HIAAAHH 228
Score = 133 bits (338), Expect = 1e-39
Identities = 43/205 (20%), Positives = 68/205 (33%), Gaps = 37/205 (18%)
Query: 7 HWAALSGR-EDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADV---- 61
AA + + L V + T L +AA LE +L+ ++
Sbjct: 8 LLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEP 67
Query: 62 -NAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD-------------VRGATPLHR 107
++ G +AL A + L+ A+V+ + G PL
Sbjct: 68 MTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSF 127
Query: 108 AASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDA----KLLVRCGA--- 160
AA G +V+LL+ D+ D+ GNT LH + T A LL+
Sbjct: 128 AACVGSEEIVRLLIEH--GADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDH 185
Query: 161 ---RLDIQNKEKKTPLDLLPLPHLA 182
+ N + TP LA
Sbjct: 186 LKSLELVPNNQGLTPF------KLA 204
Score = 120 bits (304), Expect = 2e-34
Identities = 37/163 (22%), Positives = 62/163 (38%), Gaps = 23/163 (14%)
Query: 37 TPLILAAAAGKLEIV-RLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANV- 94
+PL+LAA ++ + +LL G +V+ + G +AL A E A +L+ +
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 95 ----NIQDVRGATPLHRAASQGITPVVKLLLTQRLDID-----------VNITDAYGNTP 139
+ G T LH A +V+ LL + + + YG P
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP 124
Query: 140 LHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLA 182
L +A +LL+ GA + Q+ T L H+
Sbjct: 125 LSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVL------HIL 161
Score = 114 bits (287), Expect = 7e-32
Identities = 35/154 (22%), Positives = 61/154 (39%), Gaps = 25/154 (16%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTN-------------RTPLILAAAAGKLEIVRL 53
H A ++ ++V LL + V + + PL AA G EIVRL
Sbjct: 80 HIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRL 139
Query: 54 LISNGADVNAKADGGHSALQYACSKGWKEIA----ELLIHNHANVN------IQDVRGAT 103
LI +GAD+ A+ G++ L + K A LL+ + + + +G T
Sbjct: 140 LIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLT 199
Query: 104 PLHRAASQGITPVVKLLLTQRLDIDVNITDAYGN 137
P A +G + + L+ +R + + +
Sbjct: 200 PFKLAGVEGNIVMFQHLMQKR--KHIAAAHHHHH 231
Score = 58.0 bits (141), Expect = 8e-11
Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 12/87 (13%)
Query: 101 GATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
+PL AA + + LL +V+ A G T LH A L A +L+
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFE-GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAP 61
Query: 161 -----RLDIQNKEKKTPLDLLPLPHLA 182
+ + E +T L H+A
Sbjct: 62 ELVFEPMTSELYEGQTAL------HIA 82
Score = 36.4 bits (85), Expect = 0.003
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 135 YGNTPLHYACEEKRL-TDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLA 182
+PL A +E + +KLL G + + +T L H+A
Sbjct: 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETAL------HIA 44
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 140 bits (355), Expect = 4e-42
Identities = 36/172 (20%), Positives = 64/172 (37%), Gaps = 10/172 (5%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
AAL+G +VV +K + ++ T L A IV LI+ GA+VN+
Sbjct: 26 LDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDS 85
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVR-GATPLHRAAS--QGITPVVKLLLTQ 123
G + L A S I L+ + A + + GAT + +G L
Sbjct: 86 HGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADV 145
Query: 124 RLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDI--QNKEKKTPL 173
+ + + ++ L E +L R G + + ++ ++T
Sbjct: 146 --EQSMGLMNSGAVYALWDYSAE---FGDELSFREGESVTVLRRDGPEETDW 192
Score = 135 bits (342), Expect = 4e-40
Identities = 40/161 (24%), Positives = 57/161 (35%), Gaps = 6/161 (3%)
Query: 18 VDFLLKNKSPVDPKDD---TNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQY 74
+ +L+ L+ AA G+LE+V+ + D + + G +AL
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60
Query: 75 ACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDA 134
A I + LI ANVN D G TPLH AAS T + L+ I T +
Sbjct: 61 AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFA-TTLS 119
Query: 135 YGNTPLHYA--CEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
G T E A L + + N L
Sbjct: 120 DGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYAL 160
Score = 129 bits (327), Expect = 7e-38
Identities = 32/171 (18%), Positives = 57/171 (33%), Gaps = 7/171 (4%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK-A 65
H A +VDFL+ + V+ D TPL AA+ I L+ +GA + A
Sbjct: 59 HNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTL 118
Query: 66 DGGHSALQYA--CSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQ 123
G +A + +G+ + A L ++ + + L S + +
Sbjct: 119 SDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALW-DYSAEFGDELSFREGE 177
Query: 124 RLDIDVNITDAYGNTPLHYACEEKRL-TDAKLLVRCGARLDIQNKEKKTPL 173
+ V D T +A + + R+ Q + K
Sbjct: 178 --SVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKHHH 226
Score = 59.2 bits (144), Expect = 4e-11
Identities = 11/103 (10%), Positives = 23/103 (22%), Gaps = 4/103 (3%)
Query: 7 HWAALS--GREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK 64
G D +L + + + L +A + + V +
Sbjct: 126 EKCDPYREGYADCATYLADVEQSMGLMNSGAVYALW-DYSAEFGDELSFREGESVTVLRR 184
Query: 65 ADGGHSALQYACSKGWKEI-AELLIHNHANVNIQDVRGATPLH 106
+ +A G + V Q + H
Sbjct: 185 DGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKHHHH 227
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 139 bits (351), Expect = 5e-42
Identities = 25/179 (13%), Positives = 66/179 (36%), Gaps = 20/179 (11%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAA-----AGKLEIVRLLISNGAD 60
+ AA+ G + L + + K+ ++ ++ + +I LI+ GAD
Sbjct: 10 VSAAAMLGTYEDFLELFEKG--YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD 67
Query: 61 VNAKADGGHSALQYACSKGWK------EIAELLIHNHANVNIQDVRGATPLHRAASQG-- 112
+ ++ G + G E+ ++ + A++ + +
Sbjct: 68 IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFV 127
Query: 113 ----ITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNK 167
+ P+ KL+ +Q + + I D +G T L + ++ K++ + +++
Sbjct: 128 DENEMIPLYKLIFSQS-GLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKEN 185
Score = 124 bits (314), Expect = 2e-36
Identities = 24/158 (15%), Positives = 50/158 (31%), Gaps = 18/158 (11%)
Query: 34 TNRTPLILAAAAGKLEIVRLLISNGADVNAKADG---GHSALQYACSKGWKEIAELLIHN 90
+ + AA G E L G + + L+ + +I+ LI+
Sbjct: 5 SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64
Query: 91 HANVNIQDVRGATPLHRAASQG------ITPVVKLLLTQRLDIDVNITDAYGNTPLHYAC 144
A++ + G T G T + K+ L + D+ +
Sbjct: 65 GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKG--ADITALYKPYKIVVFKNI 122
Query: 145 EEKRLTDAK-------LLVRCGARLDIQNKEKKTPLDL 175
+ + + + + G +L I++K T L+
Sbjct: 123 FNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEF 160
Score = 75.5 bits (186), Expect = 2e-17
Identities = 15/120 (12%), Positives = 30/120 (25%), Gaps = 11/120 (9%)
Query: 63 AKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVR---GATPLHRAASQGITPVVKL 119
+ A + + A G E L ++ L + +
Sbjct: 1 SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMF 60
Query: 120 LLTQRLDIDVNITDAYGNTPLHYACEE------KRLTDAKLLVRCGARLDIQNKEKKTPL 173
L+ + D+ G T + K+ + GA + K K +
Sbjct: 61 LINK--GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVV 118
Score = 28.9 bits (65), Expect = 0.69
Identities = 1/28 (3%), Positives = 9/28 (32%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDT 34
+ + + + + K+++
Sbjct: 159 EFVKRCQKPIALKMMEDYIKKYNLKENS 186
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 132 bits (334), Expect = 5e-40
Identities = 47/119 (39%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 37 TPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNI 96
L+ AA AG+ + VR+L++NGADVNAK + G + L A + G EI E+L+ N A+VN
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA 75
Query: 97 QDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLL 155
D G TPLH AA G + ++LL DVN D +G T + A++L
Sbjct: 76 VDAIGFTPLHLAAFIGHLEIAEVLLKH--GADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 128 bits (324), Expect = 2e-38
Identities = 47/115 (40%), Positives = 65/115 (56%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
AA +G++D V L+ N + V+ KD+ TPL LA A G LEIV +L+ NGADVNA
Sbjct: 19 LEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDA 78
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL 121
G + L A G EIAE+L+ + A+VN QD G T + G + ++L
Sbjct: 79 IGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133
Score = 106 bits (268), Expect = 5e-30
Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 9/120 (7%)
Query: 54 LISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGI 113
+G+D+ K L A G + +L+ N A+VN +D G TPL+ A + G
Sbjct: 7 HHHHGSDLGKK-------LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGH 59
Query: 114 TPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
+V++LL DVN DA G TPLH A L A++L++ GA ++ Q+K KT
Sbjct: 60 LEIVEVLLKN--GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAF 117
Score = 52.4 bits (127), Expect = 3e-09
Identities = 12/50 (24%), Positives = 25/50 (50%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLIS 56
H AA G ++ + LLK+ + V+ +D +T ++ G ++ +L
Sbjct: 85 HLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 130 bits (329), Expect = 2e-39
Identities = 35/117 (29%), Positives = 49/117 (41%), Gaps = 2/117 (1%)
Query: 30 PKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIH 89
P + A G L+ V+ ++ G DVN +GG L YA G EI E L+
Sbjct: 2 PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL 61
Query: 90 NHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEE 146
A++N D TPL A +G VKLLL++ D + G T +
Sbjct: 62 KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSK--GADKTVKGPDGLTAFEATDNQ 116
Score = 127 bits (323), Expect = 2e-38
Identities = 31/112 (27%), Positives = 50/112 (44%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
WA +G D V + V+ + R PL AA G+LEI+ L+ GAD+NA
Sbjct: 12 MWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDK 71
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVK 118
+ L A +G +LL+ A+ ++ G T +Q I +++
Sbjct: 72 HHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 40.5 bits (96), Expect = 4e-05
Identities = 7/41 (17%), Positives = 16/41 (39%)
Query: 133 DAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
+ + +A + L + K V G ++ + + PL
Sbjct: 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPL 44
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 129 bits (326), Expect = 5e-39
Identities = 41/114 (35%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Query: 29 DPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLI 88
TPL AA G E V+ L+S GADVNA++ G++ L A G EI +LL+
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL 62
Query: 89 HNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHY 142
A+VN + G TP H A G +VKLL + DVN + H+
Sbjct: 63 AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAK--GADVNARSWGSSHHHHH 114
Score = 118 bits (299), Expect = 5e-35
Identities = 37/100 (37%), Positives = 53/100 (53%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
H AA +G + V LL + V+ + TPL LAA G EIV+LL++ GADVNA++
Sbjct: 14 HNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSK 73
Query: 67 GGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLH 106
G++ A G EI +LL A+VN + + H
Sbjct: 74 DGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 105 bits (265), Expect = 7e-30
Identities = 38/116 (32%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Query: 58 GADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVV 117
G +K G++ L A G E + L+ A+VN + G TPLH AA G +V
Sbjct: 1 GHMWGSK--DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58
Query: 118 KLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPL 173
KLLL + DVN GNTP H A + KLL GA ++ ++
Sbjct: 59 KLLLAK--GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112
Score = 79.3 bits (197), Expect = 8e-20
Identities = 25/68 (36%), Positives = 36/68 (52%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
H AA +G ++V LL + V+ + TP LA G EIV+LL + GADVNA++
Sbjct: 47 HLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSW 106
Query: 67 GGHSALQY 74
G +
Sbjct: 107 GSSHHHHH 114
Score = 68.9 bits (170), Expect = 9e-16
Identities = 33/88 (37%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 95 NIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKL 154
G TPLH AA G VK LL++ DVN GNTPLH A + KL
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSK--GADVNARSKDGNTPLHLAAKNGHAEIVKL 60
Query: 155 LVRCGARLDIQNKEKKTPLDLLPLPHLA 182
L+ GA ++ ++K+ TP HLA
Sbjct: 61 LLAKGADVNARSKDGNTPE------HLA 82
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 114 bits (288), Expect = 8e-32
Identities = 45/199 (22%), Positives = 68/199 (34%), Gaps = 45/199 (22%)
Query: 7 HWAAL---SGREDVVDFLLKN-----------KSPVDPKDDTNRTPLILAAAAGKLEIVR 52
A L +GR D + LL SP +T L +A V
Sbjct: 51 PKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVE 110
Query: 53 LLISNGADVNAKADG--------------GHSALQYACSKGWKEIAELLI---HNHANVN 95
LL+ GADV+A+A G G L A I L H A++
Sbjct: 111 LLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLR 170
Query: 96 IQDVRGATPLHRAASQG---------ITPVVKLLLTQRLDID-----VNITDAYGNTPLH 141
QD RG T LH + +T + LLL + + + + G +PL
Sbjct: 171 RQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLM 230
Query: 142 YACEEKRLTDAKLLVRCGA 160
A + ++ + ++R
Sbjct: 231 MAAKTGKIGIFQHIIRREI 249
Score = 87.9 bits (218), Expect = 1e-21
Identities = 33/176 (18%), Positives = 56/176 (31%), Gaps = 37/176 (21%)
Query: 35 NRTPLILAAAAGKLE----IVRLLISNGADVNAK----ADGGHSALQYA---CSKGWKEI 83
NR L + G + ++ L+++ + + G + L A S G +
Sbjct: 5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64
Query: 84 AELLIHN-----------HANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDI----- 127
+L+ ++ RG T LH A + V+LL+ + D+
Sbjct: 65 IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124
Query: 128 -------DVNITDAYGNTPLHYACEEKRLTDAKLLVRCG---ARLDIQNKEKKTPL 173
D +G PL A + L G A L Q+ T L
Sbjct: 125 GRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVL 180
Score = 72.1 bits (177), Expect = 1e-15
Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 19/108 (17%)
Query: 7 HWAALSGREDVVDFLLKNKSP---VDPKDDTNRTPLILAAAAGK---------LEIVRLL 54
AA + + +V +L +N + +D T L A ++ LL
Sbjct: 145 SLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLL 204
Query: 55 ISNGADVNAKADG-------GHSALQYACSKGWKEIAELLIHNHANVN 95
+ A + + G S L A G I + +I
Sbjct: 205 LIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA 252
Score = 45.2 bits (107), Expect = 3e-06
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Query: 16 DVVDFLLKNKSPVDPK-------DDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
+ D LL + + P ++ +PL++AA GK+ I + +I A
Sbjct: 199 KMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHH 258
Query: 69 H 69
H
Sbjct: 259 H 259
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 108 bits (274), Expect = 1e-31
Identities = 45/88 (51%), Positives = 54/88 (61%)
Query: 36 RTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVN 95
RTPL LAA G LE+V+LL+ GADVNAK G + L A G E+ +LL+ A+VN
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 96 IQDVRGATPLHRAASQGITPVVKLLLTQ 123
+D G TPLH AA G VVKLLL
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 99.0 bits (248), Expect = 1e-27
Identities = 39/86 (45%), Positives = 51/86 (59%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
H AA +G +VV LL+ + V+ KD RTPL LAA G LE+V+LL+ GADVNAK
Sbjct: 7 HLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK 66
Query: 67 GGHSALQYACSKGWKEIAELLIHNHA 92
G + L A G E+ +LL+ A
Sbjct: 67 NGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 89.3 bits (223), Expect = 7e-24
Identities = 41/93 (44%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 68 GHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDI 127
G + L A G E+ +LL+ A+VN +D G TPLH AA G VVKLLL
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG--A 59
Query: 128 DVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
DVN D G TPLH A L KLL+ GA
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 68.2 bits (168), Expect = 1e-15
Identities = 34/73 (46%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 101 GATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
G TPLH AA G VVKLLL DVN D G TPLH A L KLL+ GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 161 RLDIQNKEKKTPL 173
++ ++K +TPL
Sbjct: 60 DVNAKDKNGRTPL 72
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 113 bits (284), Expect = 2e-31
Identities = 38/200 (19%), Positives = 66/200 (33%), Gaps = 48/200 (24%)
Query: 7 HWAALS---GREDVVDFLLK-----------NKSPVDPKDDTNRTPLILAAAAGKLEIVR 52
A L+ G + LL+ + + + L +A L+ V+
Sbjct: 48 MKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVK 107
Query: 53 LLISNGADVNAKADG-------------GHSALQYACSKGWKEIAELLI---HNHANVNI 96
LL+ NGADV+ +A G G L A ++ L+ H A++
Sbjct: 108 LLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEA 167
Query: 97 QDVRGATPLH----------------RAASQGITPVVKLLLTQRLDIDVNITDAYGNTPL 140
D G T LH G+ + L I++ G TPL
Sbjct: 168 TDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPT--VQLEEISNHQGLTPL 225
Query: 141 HYACEEKRLTDAKLLVRCGA 160
A +E ++ + +++
Sbjct: 226 KLAAKEGKIEIFRHILQREF 245
Score = 109 bits (275), Expect = 7e-30
Identities = 45/216 (20%), Positives = 67/216 (31%), Gaps = 54/216 (25%)
Query: 15 EDVVDFLLKNK----SPVDPKDDTNRTPLILAAAA---GKLEIVRLLISNG--------- 58
++++L N + T +T L+ A G + L+
Sbjct: 19 TGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL 78
Query: 59 --ADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQD-------------VRGAT 103
A + GHSAL A K + +LL+ N A+V+++ G
Sbjct: 79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGEL 138
Query: 104 PLHRAASQGITPVVKLLLTQRLDI-DVNITDAYGNTPLHYACEEKRLTD----------- 151
PL AA VV LL + TD+ GNT LH +
Sbjct: 139 PLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYD 198
Query: 152 -----AKLLVRCGARLDIQNKEKKTPLDLLPLPHLA 182
L +I N + TPL LA
Sbjct: 199 GLLQMGARLCPTVQLEEISNHQGLTPL------KLA 228
Score = 102 bits (257), Expect = 3e-27
Identities = 31/162 (19%), Positives = 52/162 (32%), Gaps = 33/162 (20%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTN-------------RTPLILAAAAGKLEIVRL 53
H A V L++N + V + PL LAA + ++V
Sbjct: 95 HIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTY 154
Query: 54 LISNG---ADVNAKADGGH----------------SALQYACSKGWKEIAELLIHNHANV 94
L+ N A + A G+ SAL G ++ L
Sbjct: 155 LLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLE 214
Query: 95 NIQDVRGATPLHRAASQGITPVVKLLLTQRLDI-DVNITDAY 135
I + +G TPL AA +G + + +L + + +
Sbjct: 215 EISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHHHH 256
Score = 59.8 bits (145), Expect = 3e-11
Identities = 26/152 (17%), Positives = 45/152 (29%), Gaps = 37/152 (24%)
Query: 35 NRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANV 94
+R L + G E + L L+Y +
Sbjct: 2 DRDRLFSVVSRGVPEELTGL-----------------LEYLRWNSKYLTD--------SA 36
Query: 95 NIQDVRGATPLHRAA---SQGITPVVKLLL---------TQRLDIDVNITDAYGNTPLHY 142
+ G T L +A G+ + LL ++ G++ LH
Sbjct: 37 YTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHI 96
Query: 143 ACEEKRLTDAKLLVRCGARLDIQNKEKKTPLD 174
A E++ L KLLV GA + ++ +
Sbjct: 97 AIEKRSLQCVKLLVENGADVHLRACGRFFQKH 128
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 108 bits (273), Expect = 4e-31
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 3/112 (2%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGG 68
+ L+ S + L+ AA AG+ + VR+L++NGADV AK G
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSDL---GKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 69 HSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
+ L A G E+ +LL+ A+V QD G T + G + ++L
Sbjct: 58 STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 104 bits (263), Expect = 1e-29
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 5/114 (4%)
Query: 42 AAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRG 101
++ L+ G+ + + L A G + +L+ N A+V +D G
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSD---LGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 102 ATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLL 155
+TPLH AA G VVKLLL DV D +G T + + A++L
Sbjct: 58 STPLHLAARNGHLEVVKLLLEA--GADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 86.1 bits (214), Expect = 2e-22
Identities = 33/81 (40%), Positives = 48/81 (59%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
AA +G++D V L+ N + V KD TPL LAA G LE+V+LL+ GADV A+
Sbjct: 29 LEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDK 88
Query: 67 GGHSALQYACSKGWKEIAELL 87
G +A + G +++AE+L
Sbjct: 89 FGKTAFDISIDNGNEDLAEIL 109
Score = 83.0 bits (206), Expect = 3e-21
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 5/101 (4%)
Query: 75 ACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDA 134
S + L+ +++ L AA G V++L+ DV D
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMAN--GADVAAKDK 55
Query: 135 YGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
G+TPLH A L KLL+ GA + Q+K KT D+
Sbjct: 56 NGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI 96
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 111 bits (279), Expect = 2e-30
Identities = 43/221 (19%), Positives = 70/221 (31%), Gaps = 58/221 (26%)
Query: 7 HWAALS---GREDVVDFLLKNKSPVDP-----------KDDTNRTPLILAAAAGKLEIVR 52
A L+ G+ D + LL D +T L +A + +V
Sbjct: 59 LKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVT 118
Query: 53 LLISNGADVNAKADG--------------GHSALQYACSKGWKEIAELLI---HNHANVN 95
LL+ NGADV A A+G G L A I + L+ A+++
Sbjct: 119 LLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADIS 178
Query: 96 IQDVRGATPLHRAASQG---------ITPVVKLLLTQRLDI-----DVNITDAYGNTPLH 141
+D G T LH +T + +L + IT+ G TPL
Sbjct: 179 ARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLA 238
Query: 142 YACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLA 182
A ++ +++ + + H A
Sbjct: 239 LAASSGKIGVLAYILQ-------REIHEPECR------HAA 266
Score = 106 bits (266), Expect = 2e-28
Identities = 35/173 (20%), Positives = 57/173 (32%), Gaps = 42/173 (24%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTN--------------RTPLILAAAAGKLEIVR 52
H A +V L++N + V + + PL LAA +L IV+
Sbjct: 106 HIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVK 165
Query: 53 LLISNG---ADVNAKADGGHSALQYACSKGWKEIAE----------------LLIHNHAN 93
L+ N AD++A+ G++ L + L
Sbjct: 166 FLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKL 225
Query: 94 VNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEE 146
I + +G TPL AAS G V+ +L + + + H A
Sbjct: 226 EEITNRKGLTPLALAASSGKIGVLAYILQR---------EIHEPECRHAAAHH 269
Score = 95.6 bits (238), Expect = 3e-24
Identities = 34/185 (18%), Positives = 56/185 (30%), Gaps = 37/185 (20%)
Query: 29 DPKDDTNRTPLILAAAAGK-------LEIVRLLISNGADVNAK-ADGGHSALQYA---CS 77
P +R + A A L ++ D K + G + L A
Sbjct: 7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLH 66
Query: 78 KGWKEIAELLIHN-----------HANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLD 126
G + LL+ +A+ +G T LH A + +V LL+ D
Sbjct: 67 NGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD 126
Query: 127 ID------------VNITDAYGNTPLHYACEEKRLTDAKLLVRCG---ARLDIQNKEKKT 171
+ +G PL A +L K L++ A + ++ T
Sbjct: 127 VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNT 186
Query: 172 PLDLL 176
L L
Sbjct: 187 VLHAL 191
Score = 76.7 bits (189), Expect = 2e-17
Identities = 20/125 (16%), Positives = 32/125 (25%), Gaps = 26/125 (20%)
Query: 7 HWAALSGREDVVDFLLKNKSP---VDPKDDTNRTPLILAAAAGK---------------- 47
AA + + +V FLL+N + +D T L
Sbjct: 153 SLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEI 212
Query: 48 LEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHR 107
L + L G + L A S G + ++ + H
Sbjct: 213 LILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH-------EPECRHA 265
Query: 108 AASQG 112
AA
Sbjct: 266 AAHHH 270
Score = 66.0 bits (161), Expect = 2e-13
Identities = 27/138 (19%), Positives = 41/138 (29%), Gaps = 20/138 (14%)
Query: 56 SNGADVNAKADGGHSALQYACSKGWKEIAELLIH-------NHANVNIQDV-RGATPLHR 107
S A ++ A ++ + E L+ + +D G T L +
Sbjct: 1 SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLK 60
Query: 108 A---ASQGITPVVKLLLTQRLDID---------VNITDAYGNTPLHYACEEKRLTDAKLL 155
A G + LLL D + G T LH A E + +T LL
Sbjct: 61 AMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLL 120
Query: 156 VRCGARLDIQNKEKKTPL 173
V GA +
Sbjct: 121 VENGADVQAAANGDFFKK 138
Score = 48.6 bits (116), Expect = 2e-07
Identities = 10/78 (12%), Positives = 23/78 (29%), Gaps = 7/78 (8%)
Query: 2 ERLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADV 61
+ + + + L + + TPL LAA++GK+ ++ ++
Sbjct: 200 DNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH- 258
Query: 62 NAKADGGHSALQYACSKG 79
A
Sbjct: 259 ------EPECRHAAAHHH 270
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 110 bits (276), Expect = 1e-29
Identities = 28/187 (14%), Positives = 54/187 (28%), Gaps = 18/187 (9%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAG----KLEIVRLLISNGADVN 62
HW ++V L+K+ S D+ + L+ A + LL +
Sbjct: 136 HWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI 195
Query: 63 AKADGGHSALQYACSKGWKE------------IAELLIHNHANVNIQDVRGATPLHRAAS 110
+ + L + + ++ +
Sbjct: 196 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKN 255
Query: 111 QGITPVVKLLLTQRLDI--DVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKE 168
+ L + I +N D+ G+T L+ A ++ L+ GA I NK
Sbjct: 256 GERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKS 315
Query: 169 KKTPLDL 175
P+D
Sbjct: 316 GLRPVDF 322
Score = 105 bits (262), Expect = 1e-27
Identities = 28/201 (13%), Positives = 64/201 (31%), Gaps = 18/201 (8%)
Query: 5 LIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKL-EIVRLLISNGADVNA 63
+ +++ L + S + + ++ + L E+ + ++N
Sbjct: 66 FLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNI 125
Query: 64 KADG-GHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQG---ITPVVKL 119
D G++ L + S E+ + L+ + +N D G + L +A + +
Sbjct: 126 PVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEA 185
Query: 120 LLTQRLDIDVNITDAYGNTPLHYACEEKRLTD------------AKLLVRCGARLDIQNK 167
LL L + + D+ T LH+ +T +V+ R
Sbjct: 186 LL-DYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGT 244
Query: 168 EKKTPLDLLPLPHLAQALTEI 188
+K ++ E
Sbjct: 245 NEKESKPNDKNGERKDSILEN 265
Score = 101 bits (252), Expect = 4e-26
Identities = 31/195 (15%), Positives = 70/195 (35%), Gaps = 25/195 (12%)
Query: 7 HWAALSGREDVVDFLLKNKSPVD-PKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
H + S ++V D + ++ P D+ TPL + LE+V+ L+ +G++
Sbjct: 102 HVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGD 161
Query: 66 DGGHSALQYACSKG----WKEIAELLIHNHANVNIQDVRGATPLHRAA-----------S 110
+ G S L A LL + + + ++D T LH +
Sbjct: 162 NMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAA 221
Query: 111 QGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLL---VRCGARLDIQNK 167
+ ++ + ++ + + + + E++ + + L L+ Q+
Sbjct: 222 KYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS 281
Query: 168 EKKTPLDLLPLPHLA 182
T L ++A
Sbjct: 282 NGDTCL------NIA 290
Score = 70.1 bits (171), Expect = 1e-14
Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 4/105 (3%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGK----LEIVRLLISNGADVNAK 64
AA + ++ +++K ++ + + LE + L +NA+
Sbjct: 220 AAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQ 279
Query: 65 ADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAA 109
G + L A G I + L+ A+ I + G P+ A
Sbjct: 280 DSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
Score = 59.7 bits (144), Expect = 5e-11
Identities = 14/69 (20%), Positives = 26/69 (37%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD 66
+ + +D + ++ +D T L +AA G + IV L+ GAD
Sbjct: 255 NGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANK 314
Query: 67 GGHSALQYA 75
G + +
Sbjct: 315 SGLRPVDFG 323
Score = 36.9 bits (85), Expect = 0.002
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 7 HWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAA 43
+ AA G +VD LL + + + P+ A
Sbjct: 288 NIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 100 bits (251), Expect = 1e-25
Identities = 25/170 (14%), Positives = 50/170 (29%), Gaps = 6/170 (3%)
Query: 26 SPVDPKDDTNRTPLILAAAAGK---LEIVRLLISNGADVNAKADGGHSALQYACSKGWKE 82
S K + +AA G L+ + LL+++ V + A + A G
Sbjct: 83 SDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLH 142
Query: 83 IAELLIHNHANVNIQDVR--GATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPL 140
+ L + ++ AA G V+ L + A
Sbjct: 143 VLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAF 202
Query: 141 HYACEEK-RLTDAKLLVRCGARLDIQNKEKKTPLDLLPLPHLAQALTEIE 189
+A + L+ C L + + P +A+ + ++
Sbjct: 203 RWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLK 252
Score = 87.3 bits (216), Expect = 1e-20
Identities = 26/201 (12%), Positives = 48/201 (23%), Gaps = 30/201 (14%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDT--NRTPLILAAAAGKLEIVRLLISNGADVNA 63
AA +G V++ L + N LAA G L ++ L
Sbjct: 132 FRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEAT 191
Query: 64 K---ADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
A+ ++ A +G + L+ + ++ + + I V L
Sbjct: 192 AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRL 251
Query: 121 LTQR-----------LDIDVNITDAYGNTPLHYACEEKRLTDAKLL--------VRCGAR 161
D+ G L + ++ A
Sbjct: 252 KEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAP 311
Query: 162 LDIQNKEKKTPLDLLPLPHLA 182
+ L LA
Sbjct: 312 TATIPGDANELL------RLA 326
Score = 87.3 bits (216), Expect = 1e-20
Identities = 24/198 (12%), Positives = 46/198 (23%), Gaps = 28/198 (14%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKD--DTNRTPLILAAAA-GKLEIVRLLISNGADVN 62
AA +G V++ L + N AA G ++ L+ +
Sbjct: 167 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA 226
Query: 63 AKADGGHSALQYACSKGWKEIAELLIHNHANVNI-------------QDVRGATPLHRAA 109
+ + L H + + ++G L
Sbjct: 227 YAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLI 286
Query: 110 SQGITPVVKLL------LTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGARLD 163
+ ++ + + N L A LL+ + L
Sbjct: 287 RRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLA 346
Query: 164 IQNK------EKKTPLDL 175
+ E LDL
Sbjct: 347 LTKANNYYINETGGRLDL 364
Score = 79.2 bits (195), Expect = 8e-18
Identities = 23/162 (14%), Positives = 41/162 (25%), Gaps = 9/162 (5%)
Query: 15 EDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKAD-GGHSALQ 73
++ + L K+ L+ A + L S+ K++ A
Sbjct: 47 KEAIHIFLPGT-----KNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAI 101
Query: 74 YACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITD 133
CS + LL+ + V + AA G V+ L + +
Sbjct: 102 TGCSSA-LDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQ 160
Query: 134 AYGNTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKK--TPL 173
A A E L L + +
Sbjct: 161 AENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAF 202
Score = 60.0 bits (145), Expect = 5e-11
Identities = 17/124 (13%), Positives = 34/124 (27%), Gaps = 20/124 (16%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGK---LEIVRLLIS-----N 57
+ G D+V + L L+ +R L+S
Sbjct: 258 FKLSNPDGVFDLVT---------KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKA 308
Query: 58 GADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVV 117
A + L+ A G + LL+ + + + A + + G +
Sbjct: 309 LAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTK---ANNYYINETGGRLDLR 365
Query: 118 KLLL 121
+ L
Sbjct: 366 AVAL 369
Score = 59.2 bits (143), Expect = 9e-11
Identities = 13/100 (13%), Positives = 31/100 (31%), Gaps = 11/100 (11%)
Query: 4 LLIHWAALSGREDVVDFL--------LKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLI 55
++ E ++D + +K +P L LA G LL+
Sbjct: 280 YMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLL 339
Query: 56 SNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVN 95
S + + + G ++ + + +H + +
Sbjct: 340 SIPSVLALTKANN---YYINETGGRLDLRAVALEHHHHHH 376
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 78.9 bits (194), Expect = 4e-18
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Query: 27 PVDPKDDTNRTPLILAAAAGK---LEIVRLLISNGADVNAKADGGHSALQYACSKGWKEI 83
P+ + + T L LA + L IV L+ N +++ + G +AL Y C E
Sbjct: 161 PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAEC 220
Query: 84 AELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLL 121
+LL+ A++ I + G TPL A +LL
Sbjct: 221 LKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLT 258
Score = 75.4 bits (185), Expect = 9e-17
Identities = 32/152 (21%), Positives = 54/152 (35%), Gaps = 15/152 (9%)
Query: 19 DFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAK------ADGGHSAL 72
+ K + K + A + + ++G D+ K + +AL
Sbjct: 118 RYARKKHADTAAKLHSLCE----AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETAL 173
Query: 73 QYACSKG---WKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDV 129
A I + L+ N N++ Q +G+T LH +KLLL + I
Sbjct: 174 HLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI-- 231
Query: 130 NITDAYGNTPLHYACEEKRLTDAKLLVRCGAR 161
I + G TPL A K +LL + +
Sbjct: 232 EIANESGETPLDIAKRLKHEHCEELLTQALSG 263
Score = 68.9 bits (168), Expect = 2e-14
Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 10/105 (9%)
Query: 3 RLLIHWAALSGRED---VVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA 59
+H A S +VDFL++N +D + T L E ++LL+ A
Sbjct: 170 ETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA 229
Query: 60 DVNAKADGGHSALQYACSKGWKEIAELLIH-------NHANVNIQ 97
+ + G + L A + ELL +H +V +
Sbjct: 230 SIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVHVEYE 274
Score = 65.8 bits (160), Expect = 2e-13
Identities = 31/159 (19%), Positives = 60/159 (37%), Gaps = 8/159 (5%)
Query: 22 LKNKSPVDPKDDTNRTPL---ILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSK 78
L ++ PV P ++ I A + + A +++ + + + +
Sbjct: 89 LPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTRDIFGLLQ 148
Query: 79 GWKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKL--LLTQRLDIDVNITDAYG 136
+ + +L + T LH A + + L Q +++ G
Sbjct: 149 AYADGVDLTEKIPLANGHEPDE--TALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKG 205
Query: 137 NTPLHYACEEKRLTDAKLLVRCGARLDIQNKEKKTPLDL 175
+T LHY C KLL+R A ++I N+ +TPLD+
Sbjct: 206 STALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI 244
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 77.1 bits (189), Expect = 5e-17
Identities = 36/122 (29%), Positives = 48/122 (39%), Gaps = 4/122 (3%)
Query: 42 AAAAGKLEIVRLLISNGADVNAKADG--GHSALQYACSKGWKEIAELLIHNHANVNIQDV 99
+ L + +++GADVN G + L A + E L+ N ANVN D
Sbjct: 207 SGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADS 266
Query: 100 RGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCG 159
G PLH A G T + L L + D+ D+ G PL A E LL
Sbjct: 267 AGRGPLHHATILGHTGLACLFLKRGA--DLGARDSEGRDPLTIAMETANADIVTLLRLAK 324
Query: 160 AR 161
R
Sbjct: 325 MR 326
Score = 74.8 bits (183), Expect = 2e-16
Identities = 30/90 (33%), Positives = 39/90 (43%)
Query: 32 DDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNH 91
N TPLI A AA L L+ NGA+VN G L +A G +A L +
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRG 291
Query: 92 ANVNIQDVRGATPLHRAASQGITPVVKLLL 121
A++ +D G PL A +V LL
Sbjct: 292 ADLGARDSEGRDPLTIAMETANADIVTLLR 321
Score = 64.8 bits (157), Expect = 8e-13
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 98 DVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVR 157
ATPL +A + + LL + +VN D+ G PLH+A A L ++
Sbjct: 232 GQDNATPLIQATAANSLLACEFLL--QNGANVNQADSAGRGPLHHATILGHTGLACLFLK 289
Query: 158 CGARLDIQNKEKKTPLDL 175
GA L ++ E + PL +
Sbjct: 290 RGADLGARDSEGRDPLTI 307
Score = 64.8 bits (157), Expect = 8e-13
Identities = 23/91 (25%), Positives = 34/91 (37%)
Query: 3 RLLIHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVN 62
+ A + +FLL+N + V+ D R PL A G + L + GAD+
Sbjct: 236 ATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG 295
Query: 63 AKADGGHSALQYACSKGWKEIAELLIHNHAN 93
A+ G L A +I LL
Sbjct: 296 ARDSEGRDPLTIAMETANADIVTLLRLAKMR 326
Score = 44.0 bits (103), Expect = 1e-05
Identities = 16/62 (25%), Positives = 24/62 (38%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKA 65
+H A + G + LK + + +D R PL +A +IV LL A
Sbjct: 272 LHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAA 331
Query: 66 DG 67
G
Sbjct: 332 QG 333
Score = 35.9 bits (82), Expect = 0.006
Identities = 15/75 (20%), Positives = 26/75 (34%)
Query: 101 GATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVRCGA 160
GA + P + L D++ TPL A L + L++ GA
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA 259
Query: 161 RLDIQNKEKKTPLDL 175
++ + + PL
Sbjct: 260 NVNQADSAGRGPLHH 274
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 75.0 bits (184), Expect = 1e-16
Identities = 30/135 (22%), Positives = 45/135 (33%), Gaps = 11/135 (8%)
Query: 30 PKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADG------GHSALQYACSKGWK-- 81
+ L A L V +NG D G L A +
Sbjct: 146 RRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQAS 205
Query: 82 -EIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPL 140
+ + +I N +++ + G T LH AA +KLLL R V + G T L
Sbjct: 206 LPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR--ALVGTVNEAGETAL 263
Query: 141 HYACEEKRLTDAKLL 155
A ++ +LL
Sbjct: 264 DIARKKHHKECEELL 278
Score = 72.7 bits (178), Expect = 9e-16
Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 4/101 (3%)
Query: 24 NKSPVDPKDDTN-RTPLILAAAAGK---LEIVRLLISNGADVNAKADGGHSALQYACSKG 79
+ P L LA L +V +I NG ++AKA G++AL YA
Sbjct: 178 GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYN 237
Query: 80 WKEIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLL 120
+ +LL+ A V + G T L A + +LL
Sbjct: 238 QPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 278
Score = 69.2 bits (169), Expect = 2e-14
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 10/105 (9%)
Query: 3 RLLIHWAALSGRED---VVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISNGA 59
L++H A + +VDF+++N +D K T L AA + + ++LL+ A
Sbjct: 191 ELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRA 250
Query: 60 DVNAKADGGHSALQYACSKGWKEIAELLI-------HNHANVNIQ 97
V + G +AL A K KE ELL +V+
Sbjct: 251 LVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLHVDYS 295
Score = 65.8 bits (160), Expect = 3e-13
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 101 GATPLHRA---ASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEEKRLTDAKLLVR 157
LH A A+Q P+V ++ ++ A GNT LHYA + KLL++
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNG--GHLDAKAADGNTALHYAALYNQPDCLKLLLK 247
Query: 158 CGARLDIQNKEKKTPLDL 175
A + N+ +T LD+
Sbjct: 248 GRALVGTVNEAGETALDI 265
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 69.2 bits (169), Expect = 3e-14
Identities = 30/143 (20%), Positives = 47/143 (32%), Gaps = 12/143 (8%)
Query: 28 VDPKDDTNRTPLILAAAAGKLEIVRLLISNGADVNAKADG------GHSALQYACSKGWK 81
+ L A L V +NG D G L A +
Sbjct: 126 ARRCTPEPQR-LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQ 184
Query: 82 ---EIAELLIHNHANVNIQDVRGATPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNT 138
+ + +I N +++ + G T LH AA +KLLL R + + G T
Sbjct: 185 ASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG--TVNEAGET 242
Query: 139 PLHYACEEKRLTDAKLLVRCGAR 161
L A ++ +LL + A
Sbjct: 243 ALDIARKKHHKECEELLEQAQAG 265
Score = 57.2 bits (138), Expect = 4e-10
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 1 NERLLIHWAALSGRED---VVDFLLKNKSPVDPKDDTNRTPLILAAAAGKLEIVRLLISN 57
E L++H A + +VDF+++N +D K T L AA + + ++LL+
Sbjct: 170 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG 229
Query: 58 GADVNAKADGGHSALQYACSKGWKEIAELLIHNHAN 93
A V + G +AL A K KE ELL A
Sbjct: 230 RALVGTVNEAGETALDIARKKHHKECEELLEQAQAG 265
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 2e-07
Identities = 46/257 (17%), Positives = 75/257 (29%), Gaps = 96/257 (37%)
Query: 3 RLLIHWAALSGR-----------EDVVDFLLKNKSPVD-------------PKDDTNRT- 37
L IH+ G+ E +VD LK + K + T
Sbjct: 1671 NLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ 1730
Query: 38 ---PLILAAAAGKLEIVRLLISNGADVNAKADGGHS-----ALQYACSKGWKEIAELLIH 89
P + L S G GHS AL A +A+++
Sbjct: 1731 FTQPALTLME---KAAFEDLKSKGLIPADATFAGHSLGEYAAL--AS------LADVM-- 1777
Query: 90 NHANVNIQDV------RGATPLHRAASQG-----------ITP--VVKLLLTQRLDIDV- 129
+I+ + RG T + A + I P V + L V
Sbjct: 1778 -----SIESLVEVVFYRGMT-MQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE 1831
Query: 130 NITDAYG--------NTP-LHYAC--EEKRLTDAKLLVRCGARLDIQNKEKKTPLDLLPL 178
+ G N Y + + L D + L+ K +K +D++ L
Sbjct: 1832 RVGKRTGWLVEIVNYNVENQQYVAAGDLRAL-DT--VTNV---LN-FIKLQK--IDIIEL 1882
Query: 179 PHLAQALTEIEPIVGDL 195
+L+ +E + G L
Sbjct: 1883 QK---SLS-LEEVEGHL 1895
Score = 34.6 bits (79), Expect = 0.019
Identities = 35/193 (18%), Positives = 61/193 (31%), Gaps = 61/193 (31%)
Query: 6 IHWAALSGREDVVDFLLKNKSPV-----------DPKDDTNRTPLILAAAAGKLEIVRLL 54
IH A ++ L+K K + P D + + L A G ++V +
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 55 ISNGADVNAKADGGHSALQ-----YACSKGWKEIAEL----------LIHNHANVNIQDV 99
GG Q Y ++E+ +L LI A + +
Sbjct: 161 ------------GG----QGNTDDY-----FEELRDLYQTYHVLVGDLIKFSAETLSELI 199
Query: 100 RGATPLHRAASQGITPVVKLLLT--QRLDIDVNITDAYGNTPL-------HY--ACEEKR 148
R + +QG+ +++ L D D ++ + PL HY +
Sbjct: 200 RTTLDAEKVFTQGL-NILEWLENPSNTPDKDYLLSIPI-SCPLIGVIQLAHYVVTAKLLG 257
Query: 149 LTDAKLLVR-CGA 160
T +L GA
Sbjct: 258 FTPGELRSYLKGA 270
Score = 33.1 bits (75), Expect = 0.051
Identities = 33/176 (18%), Positives = 50/176 (28%), Gaps = 63/176 (35%)
Query: 9 AALSGREDVVDFLLKNKSPVDPKDDTNRTPL---------------------ILAAAAGK 47
+L G + L K K+P D +R P +L A+
Sbjct: 384 QSLYG---LNLTLRKAKAP--SGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL 438
Query: 48 LEIVRLLISNGADVNAKA---------DGGHSALQYACSKGWKEIAELLIHNHANVNIQD 98
I + L+ N NAK DG L+ + I + +I V +
Sbjct: 439 --INKDLVKNNVSFNAKDIQIPVYDTFDGSD--LRVLSGSISERIVDCIIRLP--VKWET 492
Query: 99 VRGATPLH-----RAASQGITPVVKLLLTQRL------------DIDVNITDAYGN 137
H + G+ LT R +D+N D YG
Sbjct: 493 TTQFKATHILDFGPGGASGLGV-----LTHRNKDGTGVRVIVAGTLDINPDDDYGF 543
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.018
Identities = 39/233 (16%), Positives = 64/233 (27%), Gaps = 88/233 (37%)
Query: 22 LKNKSPVDPKDDTNRTPLI--LAAAAGKLEIVRLLISNGADVNAKADGGHSALQYACSKG 79
L N + V K + +R L A +L + ++ +G G K
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG-------VLG-------SGKT 164
Query: 80 WKEIAELLIHNHANVNIQDVRGATPLHRAASQGI---------TPVVKLLLTQRL--DID 128
W + +V + + I +P L + Q+L ID
Sbjct: 165 W------VA---LDV-CLSYK----VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 129 VNIT---DAYGNTPLHYACEEKRLTD---AKLLVRCGARL----DIQNKEKKTPLDL--- 175
N T D N L + L +K C L ++QN + +L
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC---LLVLLNVQNAKAWNAFNLSCK 267
Query: 176 ---------------------LPLPHLAQALTE----------IEPIVGDLPE 197
+ L H + LT ++ DLP
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase
inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB:
3unw_A* 3ss3_A 3ss4_A 3ss5_A*
Length = 534
Score = 29.7 bits (66), Expect = 0.73
Identities = 7/42 (16%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 6 IHWAALSGREDVVDFLLKNKSPVDPKDDTNRTPLILAAAAGK 47
+ + +L + + + K SP + +D + T + + G+
Sbjct: 486 LDYESLQQELALKETVWKKVSP-ESNEDISTTVVYRMESLGE 526
Score = 26.3 bits (57), Expect = 9.2
Identities = 4/44 (9%), Positives = 13/44 (29%), Gaps = 3/44 (6%)
Query: 103 TPLHRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPLHYACEE 146
PL + Q + + + + + + T ++
Sbjct: 484 GPLDYESLQQELALKETVWKK---VSPESNEDISTTVVYRMESL 524
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha
& beta protein, PLP-dependent transferase, aminotransf
mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB:
2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Length = 425
Score = 29.2 bits (66), Expect = 0.92
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Query: 48 LEIVRLLISNGADVNAKADGGHSALQYACSKGWKE----IAELLIHNHANVNIQDVRGAT 103
+ + + NG + + ALQY+ S G E + +L I H I
Sbjct: 48 FKTAVITVENGKTIQFGEEMMKRALQYSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQG 107
Query: 104 P----LHRAASQGITPVVKLLL 121
+ + QG+ V ++++
Sbjct: 108 QMDLCVTSGSQQGLCKVFEMII 129
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like
fold structural genomics, joint center for structural
genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium
glutamicum}
Length = 427
Score = 29.3 bits (66), Expect = 0.92
Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 9/70 (12%)
Query: 38 PLILAAAAGK-----LEIVRLLISNGADVNAKADGGHSALQYACSKGWKE----IAELLI 88
L L GK L+ L++ + KA G Y G + A+LL
Sbjct: 33 NLKLDLTRGKPSSEQLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLLG 92
Query: 89 HNHANVNIQD 98
V D
Sbjct: 93 VPVEQVLAGD 102
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of
PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens}
SCOP: c.79.1.1 PDB: 1m54_A*
Length = 435
Score = 26.5 bits (59), Expect = 5.7
Identities = 6/35 (17%), Positives = 11/35 (31%)
Query: 106 HRAASQGITPVVKLLLTQRLDIDVNITDAYGNTPL 140
+P + I +I G+TP+
Sbjct: 77 QLGRPASESPHHHTAPAKSPKILPDILKKIGDTPM 111
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase,
UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma
brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A*
2q0g_A*
Length = 353
Score = 26.7 bits (58), Expect = 6.1
Identities = 15/111 (13%), Positives = 37/111 (33%), Gaps = 14/111 (12%)
Query: 55 ISNGADVNAKADGGHSALQYACSKGWKEIAELLIHNHANVNIQDVRGATPLHRAASQGIT 114
+ D + + ++A ++ H + N+++VR
Sbjct: 93 NKTDVEDGKGGDAATQVAKGLQADILAKLARVIRQKHLSWNVEEVRRTR----------V 142
Query: 115 PVVKLLLTQRLDIDVNITDAYG--NTPL--HYACEEKRLTDAKLLVRCGAR 161
PVV++ +D D+ G N+ L Y + + ++ ++
Sbjct: 143 PVVRVKGGGAVDFDITAYRRNGVRNSALLRAYFEQNPPCRWLSMSIKRWSK 193
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family,
oxdidative decarboxylation, cystein, lantibiotics,
mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP}
SCOP: c.34.1.1
Length = 194
Score = 26.0 bits (58), Expect = 8.3
Identities = 1/19 (5%), Positives = 6/19 (31%), Gaps = 1/19 (5%)
Query: 44 AAGK-LEIVRLLISNGADV 61
++ + S ++
Sbjct: 20 SSVGISSYLLYFKSFFKEI 38
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 26.1 bits (58), Expect = 8.7
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 114 TPVVKLLLTQRLDIDVNITDAYGNTPL 140
+P + + R I NI + G TPL
Sbjct: 37 SPHIHRGIAHRQQITPNILEVIGCTPL 63
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center
for structural genomics of infec diseases, csgid,
oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus}
Length = 175
Score = 25.6 bits (57), Expect = 9.4
Identities = 4/20 (20%), Positives = 7/20 (35%), Gaps = 1/20 (5%)
Query: 44 AAGK-LEIVRLLISNGADVN 62
+ + L S +VN
Sbjct: 17 NSINISHYIIELKSKFDEVN 36
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.397
Gapped
Lambda K H
0.267 0.0902 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,106,216
Number of extensions: 183444
Number of successful extensions: 1504
Number of sequences better than 10.0: 1
Number of HSP's gapped: 643
Number of HSP's successfully gapped: 330
Length of query: 198
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 109
Effective length of database: 4,216,824
Effective search space: 459633816
Effective search space used: 459633816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (24.7 bits)