Query psy1401
Match_columns 79
No_of_seqs 105 out of 198
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 17:14:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1401.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1401hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a18_M RPL22, ribosomal protei 100.0 1.2E-50 4E-55 277.7 10.0 78 2-79 34-111 (118)
2 3izc_W 60S ribosomal protein R 100.0 9.9E-51 3.4E-55 279.0 6.8 78 2-79 32-109 (121)
3 3iz5_W 60S ribosomal protein L 100.0 8E-49 2.8E-53 272.2 5.9 78 2-79 40-120 (130)
4 1ggl_A Protein (cellular retin 53.9 20 0.0007 23.3 4.3 39 2-41 15-57 (134)
5 4a1y_A Myelin P2 protein; tran 53.2 12 0.0004 24.6 3.0 39 2-41 17-59 (133)
6 4a60_A Fatty acid-binding prot 47.2 26 0.00088 23.7 4.1 39 2-41 38-80 (154)
7 2qo4_A Liver-basic fatty acid 47.1 34 0.0012 21.9 4.5 39 2-41 14-56 (126)
8 3elx_A Ileal bIle acid-binding 46.5 35 0.0012 22.4 4.6 39 2-41 17-60 (138)
9 1ifc_A Intestinal fatty acid b 44.4 38 0.0013 21.9 4.4 39 2-41 14-56 (132)
10 3p6d_A Fatty acid-binding prot 43.8 21 0.00073 23.5 3.2 39 2-41 23-65 (139)
11 1p6p_A Fatty acid-binding prot 43.6 33 0.0011 21.9 4.0 39 2-41 13-55 (125)
12 3q6l_A Fatty acid-binding prot 42.8 22 0.00075 24.0 3.2 39 2-41 36-78 (152)
13 2f73_A L-FABP, fatty acid-bind 42.4 38 0.0013 22.7 4.3 39 2-41 36-78 (149)
14 1mvg_A Liver basic fatty acid 42.4 35 0.0012 21.9 4.0 39 2-41 13-55 (125)
15 2rcq_A CRBP-II, retinol-bindin 42.0 42 0.0014 22.0 4.4 39 2-41 19-61 (141)
16 2lba_A BABP protein; ileal bIl 41.5 42 0.0014 21.9 4.3 39 2-41 18-61 (136)
17 2a0a_A DER F 13; beta barrel, 40.9 43 0.0015 21.5 4.3 39 2-41 15-57 (131)
18 3vg7_A Fatty acid-binding prot 40.7 43 0.0015 21.7 4.3 39 2-41 17-59 (132)
19 1lpj_A Retinol-binding protein 40.7 34 0.0012 22.1 3.8 39 2-41 15-57 (133)
20 1vyf_A SM14, 14 kDa fatty acid 39.6 49 0.0017 21.4 4.4 39 2-41 17-59 (135)
21 3rsw_A Fatty acid-binding prot 37.1 31 0.0011 23.5 3.2 39 2-41 41-83 (158)
22 3ppt_A Sodium-calcium exchange 34.9 40 0.0014 21.9 3.4 39 2-41 15-57 (133)
23 1b56_A Fatty acid binding prot 32.8 45 0.0016 21.6 3.4 39 2-41 18-60 (135)
24 1mdc_A Insect fatty acid bindi 32.3 47 0.0016 21.5 3.4 39 2-41 15-57 (132)
25 1eal_A Gastrotropin, ileal lip 31.7 48 0.0016 21.2 3.4 39 2-41 13-56 (127)
26 2g7b_A Cellular retinoic acid- 31.6 43 0.0015 21.7 3.2 39 2-41 14-58 (137)
27 1crb_A Cellular retinol bindin 31.5 49 0.0017 21.4 3.4 39 2-41 15-57 (134)
28 1ftp_A Muscle fatty acid bindi 30.8 72 0.0025 20.5 4.1 39 2-41 16-59 (133)
29 1fdq_A Fatty acid-binding prot 30.4 53 0.0018 21.1 3.4 39 2-41 15-57 (131)
30 2lpe_A Kinase suppressor of RA 30.3 4.3 0.00015 28.3 -2.0 15 58-72 85-99 (149)
31 2lo0_A Uncharacterized protein 27.9 19 0.00065 22.4 0.8 12 2-13 45-56 (75)
32 1o8v_A Fatty acid binding prot 27.8 62 0.0021 20.9 3.4 39 2-41 16-59 (134)
33 3sgr_A Tandem repeat of amyloi 24.2 5 0.00017 20.3 -1.9 16 9-24 8-23 (25)
34 2kl8_A OR15; structural genomi 23.2 84 0.0029 19.6 3.2 36 2-40 14-50 (85)
35 2ekd_A Hypothetical protein PH 22.3 30 0.001 24.5 1.1 34 10-50 74-107 (207)
36 1mgs_A Human melanoma growth s 22.1 69 0.0024 18.5 2.6 31 23-53 40-70 (73)
37 1yfb_A Transition state regula 21.2 1.2E+02 0.0041 17.2 3.4 19 21-39 39-57 (59)
No 1
>4a18_M RPL22, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_M 4a1b_M 4a1d_M
Probab=100.00 E-value=1.2e-50 Score=277.72 Aligned_cols=78 Identities=47% Similarity=0.905 Sum_probs=77.2
Q ss_pred chHHHhhhhhccCCccCCCCCcEEEEEeCCEEEEEeccccchHHHHHHHHHHhhhccccceeEEEeecCceEEEeecC
Q psy1401 2 DMEKYLLERIKVGGKTSNFGNAVSLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLRDWLRVVANKKDSYELRYFQ 79 (79)
Q Consensus 2 ~fE~fL~erIKV~gk~gnlg~~V~v~r~k~ki~v~s~~~fsKrYlKYLtKKyLkk~~LrdwlrVva~~K~~YeLrYfn 79 (79)
+||+||||||||||++||||+.|+|++++++|+|+|++||||||||||||||||||+|||||||||++|++|||||||
T Consensus 34 ~fekfL~erIKV~gk~gnLg~~V~i~~~~~ki~V~s~~~fSKRYLKYLTKKyLKK~~LRDwlRVVA~~K~~YeLrYfn 111 (118)
T 4a18_M 34 EFAEFLKSKIKVGGKLGNLGENITISNDDKKINVQSTIPFSKRYLKYLTKKYLKKQDLRNYLYVTSSDKNSYQLRYFN 111 (118)
T ss_dssp HHHHHHHHHCCBTTBSSCCTTTEEEEECSSEEEEEESSCCCHHHHHHHHHHHHHHTTCTTTEEEEEEETTEEEEEECC
T ss_pred HHHHHHHHHhhccCcccccCCeEEEEEcCCEEEEEeccccchHHHHHHHHHHhhhccccceEEEEecCCCeEEEEEEe
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>3izc_W 60S ribosomal protein RPL22 (L22E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_W 3u5e_U 3u5i_U 4b6a_U
Probab=100.00 E-value=9.9e-51 Score=279.04 Aligned_cols=78 Identities=50% Similarity=0.893 Sum_probs=77.2
Q ss_pred chHHHhhhhhccCCccCCCCCcEEEEEeCCEEEEEeccccchHHHHHHHHHHhhhccccceeEEEeecCceEEEeecC
Q psy1401 2 DMEKYLLERIKVGGKTSNFGNAVSLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLRDWLRVVANKKDSYELRYFQ 79 (79)
Q Consensus 2 ~fE~fL~erIKV~gk~gnlg~~V~v~r~k~ki~v~s~~~fsKrYlKYLtKKyLkk~~LrdwlrVva~~K~~YeLrYfn 79 (79)
+||+||||||||||++||||+.|+|++++++|+|+|++||||||||||||||||||+|||||||||++|++|||||||
T Consensus 32 ~fekfL~erIKV~gk~gnLg~~V~i~~~~~ki~V~s~~~fSKRYLKYLTKKyLKK~~LRDwlRVVa~~K~~YeLryf~ 109 (121)
T 3izc_W 32 SYAKYLIDHIKVEGAVGNLGNAVTVTEDGTVVTVVSTAKFSGKYLKYLTKKYLKKNQLRDWIRFVSTKTNEYRLAFYQ 109 (121)
T ss_dssp HHHHHHHHHHHHHSSSSSCCCCEEEEECSSEEEEEESSSCSHHHHHHHHHHHHTTSSSCCCCCCSSSCSSCEEEECCC
T ss_pred HHHHHHHHHheecCcccccCceEEEEEcCCEEEEEeccccchHHHHHHHHHHhhhccccceEEEEecCCCeEEEEEEe
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999999997
No 3
>3iz5_W 60S ribosomal protein L22 (L22E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_W
Probab=100.00 E-value=8e-49 Score=272.19 Aligned_cols=78 Identities=68% Similarity=1.119 Sum_probs=76.9
Q ss_pred chHHHhhhhhcc-CCccCCCCCcEEEEEeCCEEEEEeccccchHHHHHHHHHHhhhccccceeEEEeecC--ceEEEeec
Q psy1401 2 DMEKYLLERIKV-GGKTSNFGNAVSLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLRDWLRVVANKK--DSYELRYF 78 (79)
Q Consensus 2 ~fE~fL~erIKV-~gk~gnlg~~V~v~r~k~ki~v~s~~~fsKrYlKYLtKKyLkk~~LrdwlrVva~~K--~~YeLrYf 78 (79)
+||+|||||||| ||++||||+.|+|++++++|+|+|++||||||||||||||||||+|||||||||++| ++||||||
T Consensus 40 ~fekfL~erIKV~nGk~gnLg~~V~i~~~k~ki~V~s~~~fSKRYLKYLTKKyLKKn~LRDwLRVVA~~Kd~~~YeLrYf 119 (130)
T 3iz5_W 40 SLEKFLQERIKVAGGKAGNLGDSVTVTRDKTKVTVTSDGAFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYF 119 (130)
T ss_dssp HHHHHHHHHHHHHSSCCSSSCCCEEEEECSSCEEEEESSSCSSTTHHHHHHHHHTTSSSCSSCCCCCSSSTTTTEEEECC
T ss_pred HHHHHHHhheeecCCcccccCCceEEEEeCCEEEEEecceechHHHHHHHHHHHhhcchhheEEEEecCCCCCeeEEEEE
Confidence 699999999999 999999999999999999999999999999999999999999999999999999999 79999999
Q ss_pred C
Q psy1401 79 Q 79 (79)
Q Consensus 79 n 79 (79)
|
T Consensus 120 n 120 (130)
T 3iz5_W 120 N 120 (130)
T ss_dssp C
T ss_pred e
Confidence 7
No 4
>1ggl_A Protein (cellular retinol-binding protein III); carrier, transport protein; 2.31A {Homo sapiens} SCOP: b.60.1.2
Probab=53.88 E-value=20 Score=23.29 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=27.2
Q ss_pred chHHHhhhhhccCCccCCC----CCcEEEEEeCCEEEEEecccc
Q psy1401 2 DMEKYLLERIKVGGKTSNF----GNAVSLERQKTKVILTADVAF 41 (79)
Q Consensus 2 ~fE~fL~erIKV~gk~gnl----g~~V~v~r~k~ki~v~s~~~f 41 (79)
+||.||++ +=|+=-+-++ .-.+.|+.+++.+++.+..+|
T Consensus 15 Nfdeylka-lGv~~~~rk~a~~~kp~~ei~~~Gd~~~ikt~s~~ 57 (134)
T 1ggl_A 15 NMEDYLQA-LNISLAVRKIALLLKPDKEIEHQGNHMTVRTLSTF 57 (134)
T ss_dssp CHHHHHHH-TTCCTTTTTTGGGCCCEEEEEECSSEEEEEEECSS
T ss_pred CHHHHHHH-hCCCHHHHhhhhcCCcEEEEEEcCCEEEEEEEcCC
Confidence 79999975 4443322222 346889999999999987775
No 5
>4a1y_A Myelin P2 protein; transport; HET: PLM; 1.20A {Homo sapiens} PDB: 2wut_A* 4a1h_A* 1pmp_A* 1yiv_A*
Probab=53.15 E-value=12 Score=24.56 Aligned_cols=39 Identities=15% Similarity=0.335 Sum_probs=26.9
Q ss_pred chHHHhhhhhccCC---ccC-CCCCcEEEEEeCCEEEEEecccc
Q psy1401 2 DMEKYLLERIKVGG---KTS-NFGNAVSLERQKTKVILTADVAF 41 (79)
Q Consensus 2 ~fE~fL~erIKV~g---k~g-nlg~~V~v~r~k~ki~v~s~~~f 41 (79)
+||.||.+ +=|+= +.+ .+...+.|+.+++.+++.+..+|
T Consensus 17 Nfdeylka-lGv~~~~Rk~a~~~kp~~~I~~~Gd~~tikt~s~~ 59 (133)
T 4a1y_A 17 NFDDYMKA-LGVGLATRKLGNLAKPTVIISKKGDIITIRTESTF 59 (133)
T ss_dssp SHHHHHHH-HTCCHHHHHHHHHCCCEEEEEEETTEEEEEEEETT
T ss_pred CHHHHHHH-cCCCHHHHHhHhhCCCeEEEEECCCEEEEEEecCC
Confidence 78999865 22221 222 23457999999999999988776
No 6
>4a60_A Fatty acid-binding protein 9 testis lipid-binding protein, TLBP, testis-type fatty...; transport protein; 1.53A {Homo sapiens} PDB: 3nr3_A*
Probab=47.21 E-value=26 Score=23.71 Aligned_cols=39 Identities=15% Similarity=0.336 Sum_probs=27.5
Q ss_pred chHHHhhhhhccCC---ccCC-CCCcEEEEEeCCEEEEEecccc
Q psy1401 2 DMEKYLLERIKVGG---KTSN-FGNAVSLERQKTKVILTADVAF 41 (79)
Q Consensus 2 ~fE~fL~erIKV~g---k~gn-lg~~V~v~r~k~ki~v~s~~~f 41 (79)
+||.||.+ +=|+= +.++ +.-.+.|+.+++.+++.+..+|
T Consensus 38 Nfdeymka-lGV~~~~Rk~a~~~kp~~eI~q~Gd~~tikt~st~ 80 (154)
T 4a60_A 38 NFEDYMKE-LGVNFAARNMAGLVKPTVTISVDGKMMTIRTESSF 80 (154)
T ss_dssp SHHHHHHH-HTCCHHHHHHHTTSCCEEEEEEETTEEEEEEEETT
T ss_pred CHHHHHHH-hCCCHHHHHHHhcCCceEEEEEcCCEEEEEEEcCC
Confidence 79999865 44431 2233 3457899999999999887775
No 7
>2qo4_A Liver-basic fatty acid binding protein; liver bIle acid-binding protein, BABP, fatty acid-binding PR FABP, cholic acid cholate, bIle acid; HET: CHD; 1.50A {Danio rerio} PDB: 2qo6_A* 2qo5_A* 2ftb_A* 2ft9_A*
Probab=47.10 E-value=34 Score=21.92 Aligned_cols=39 Identities=13% Similarity=0.245 Sum_probs=26.4
Q ss_pred chHHHhhhhhccCC---ccCC-CCCcEEEEEeCCEEEEEecccc
Q psy1401 2 DMEKYLLERIKVGG---KTSN-FGNAVSLERQKTKVILTADVAF 41 (79)
Q Consensus 2 ~fE~fL~erIKV~g---k~gn-lg~~V~v~r~k~ki~v~s~~~f 41 (79)
+||.||++ +=|+= +.++ +...+.|+.+++.+++.+..+|
T Consensus 14 Nfdeylka-lGv~~~~rk~a~~~kp~~ei~~~Gd~~~ikt~s~~ 56 (126)
T 2qo4_A 14 NYEEFLRA-ISLPEEVIKLAKDVKPVTEIQQNGSDFTITSKTPG 56 (126)
T ss_dssp SHHHHHHH-TTCCHHHHHHTTTCCCEEEEEEETTEEEEEEEETT
T ss_pred CHHHHHHH-cCCCHHHHHhhccCCceEEEEEeCCEEEEEEEcCC
Confidence 68888864 23321 2233 3357889999999999887775
No 8
>3elx_A Ileal bIle acid-binding protein; ileal bIle acid-bindign protein, zebrafish, cholic acid, LIP binding, transport, lipid binding protein; 1.60A {Danio rerio} SCOP: b.60.1.0 PDB: 3elz_A* 3em0_A*
Probab=46.50 E-value=35 Score=22.44 Aligned_cols=39 Identities=10% Similarity=0.059 Sum_probs=27.4
Q ss_pred chHHHhhhhhccCC---ccCC-CCCcEEEEEeCCEEEEEeccc-c
Q psy1401 2 DMEKYLLERIKVGG---KTSN-FGNAVSLERQKTKVILTADVA-F 41 (79)
Q Consensus 2 ~fE~fL~erIKV~g---k~gn-lg~~V~v~r~k~ki~v~s~~~-f 41 (79)
+||.||++ +=|+= +.++ +.-.+.|+.+++.+++.+..+ |
T Consensus 17 Nfdeymka-lGv~~~~Rk~~~~~kp~~~I~~~Gd~~tikt~s~~~ 60 (138)
T 3elx_A 17 GYEPFCKL-IGIPDDVIAKGRDFKLVTEIVQNGDDFTWTQYYPNN 60 (138)
T ss_dssp SHHHHHHH-TTCCHHHHHHTTTCCCEEEEEEETTEEEEEEEEGGG
T ss_pred CHHHHHHH-hCCCHHHHhHHhcCCceEEEEEcCCEEEEEEEEcCC
Confidence 79999865 34432 2333 334789999999999988877 5
No 9
>1ifc_A Intestinal fatty acid binding protein; lipid-binding protein; 1.19A {Rattus norvegicus} SCOP: b.60.1.2 PDB: 1ael_A 1icm_A* 1ifb_A 1ure_A* 2ifb_A* 3akn_A* 1icn_A* 1t8v_A 1dc9_A 1a57_A 1kzx_A 1kzw_A 3akm_A* 3ifb_A 1sa8_A
Probab=44.39 E-value=38 Score=21.87 Aligned_cols=39 Identities=13% Similarity=0.263 Sum_probs=26.7
Q ss_pred chHHHhhhhhccCC---ccCC-CCCcEEEEEeCCEEEEEecccc
Q psy1401 2 DMEKYLLERIKVGG---KTSN-FGNAVSLERQKTKVILTADVAF 41 (79)
Q Consensus 2 ~fE~fL~erIKV~g---k~gn-lg~~V~v~r~k~ki~v~s~~~f 41 (79)
+||.||++ +=|+= +.++ +...+.|+.+++.+++.+..+|
T Consensus 14 Nfdeylka-lGv~~~~rk~a~~~kp~~ei~~~Gd~~~ikt~s~~ 56 (132)
T 1ifc_A 14 NYEKFMEK-MGINVVKRKLGAHDNLKLTITQEGNKFTVKESSNF 56 (132)
T ss_dssp SHHHHHHH-HTCCHHHHHHHTTCCCEEEEEEETTEEEEEEECSS
T ss_pred CHHHHHHH-cCCCHHHHHHhccCCCeEEEEEeCCEEEEEEEcCC
Confidence 68889865 33321 2222 3357889999999999987775
No 10
>3p6d_A Fatty acid-binding protein, adipocyte; lipocalin, beta barrel, lipid BI protein; HET: ZGB; 1.06A {Homo sapiens} SCOP: b.60.1.2 PDB: 3p6c_A* 3p6e_A* 3p6f_A* 3p6g_A* 3p6h_A* 3rzy_A 2hnx_A* 3fr4_A* 2nnq_A* 1tow_A* 1tou_A* 3fr2_A* 3fr5_A* 1adl_A* 1alb_A 1lib_A 1lic_A* 1lid_A* 1lie_A* 1lif_A* ...
Probab=43.76 E-value=21 Score=23.50 Aligned_cols=39 Identities=15% Similarity=0.348 Sum_probs=27.1
Q ss_pred chHHHhhhhhccCC---ccCC-CCCcEEEEEeCCEEEEEecccc
Q psy1401 2 DMEKYLLERIKVGG---KTSN-FGNAVSLERQKTKVILTADVAF 41 (79)
Q Consensus 2 ~fE~fL~erIKV~g---k~gn-lg~~V~v~r~k~ki~v~s~~~f 41 (79)
+||.||.+ +=|+= +.++ +...+.|+.+++.+++.+..+|
T Consensus 23 Nfdeymka-lGv~~~~rk~a~~~kp~~~I~~~Gd~~tikt~s~~ 65 (139)
T 3p6d_A 23 NFDDYMKE-VGVGFATRKVAGMAKPNMIISVNGDVITIKSESTF 65 (139)
T ss_dssp SHHHHHHH-HTCCHHHHHHHHHCCCEEEEEEETTEEEEEEECSS
T ss_pred CHHHHHHH-hCCcHHHHHHHHhCCCeEEEEEcCCEEEEEEEecc
Confidence 78999865 33431 2222 3347899999999999888776
No 11
>1p6p_A Fatty acid-binding protein, liver; beta barrel, lipid binding protein; 2.50A {Bufo arenarum} SCOP: b.60.1.2
Probab=43.57 E-value=33 Score=21.94 Aligned_cols=39 Identities=13% Similarity=0.326 Sum_probs=26.3
Q ss_pred chHHHhhhhhccCC---ccCC-CCCcEEEEEeCCEEEEEecccc
Q psy1401 2 DMEKYLLERIKVGG---KTSN-FGNAVSLERQKTKVILTADVAF 41 (79)
Q Consensus 2 ~fE~fL~erIKV~g---k~gn-lg~~V~v~r~k~ki~v~s~~~f 41 (79)
+||.||++ +=|+= +.++ +...+.|+.+++.+++.+..+|
T Consensus 13 Nfdeymka-lGv~~~~rk~a~~~kp~~ei~~~Gd~~~ikt~s~~ 55 (125)
T 1p6p_A 13 NYENFLRT-VGLPEDIIKVAKDVNPVIEIEQNGNEFVVTSKTPK 55 (125)
T ss_dssp SHHHHHHH-HTCCHHHHHHHTTCCCEEEEEECSSEEEEEEEETT
T ss_pred CHHHHHHH-hCCCHHHHHhhccCCcEEEEEEcCCEEEEEEEcCC
Confidence 68888864 23321 2222 3357889999999999887775
No 12
>3q6l_A Fatty acid-binding protein, adipocyte; lipid chaperone, lipid binding protein; 1.40A {Homo sapiens} PDB: 2q9s_A* 2qm9_A*
Probab=42.76 E-value=22 Score=23.96 Aligned_cols=39 Identities=15% Similarity=0.348 Sum_probs=27.1
Q ss_pred chHHHhhhhhccCC---ccCC-CCCcEEEEEeCCEEEEEecccc
Q psy1401 2 DMEKYLLERIKVGG---KTSN-FGNAVSLERQKTKVILTADVAF 41 (79)
Q Consensus 2 ~fE~fL~erIKV~g---k~gn-lg~~V~v~r~k~ki~v~s~~~f 41 (79)
+||.||.+ +=|+= +.++ +.-.+.|+.+++.+++.+..+|
T Consensus 36 Nfdeymka-lGv~~~~Rk~a~~~kp~~eI~~~Gd~~tikt~st~ 78 (152)
T 3q6l_A 36 NFDDYMKE-VGVGFATRKVAGMAKPNMIISVNGDVITIKSESTF 78 (152)
T ss_dssp SHHHHHHH-HTCCHHHHHHHHHCCCEEEEEEETTEEEEEEECSS
T ss_pred CHHHHHHH-hCCCHHHHHHHHhCCCeEEEEEcCCEEEEEEEecc
Confidence 79999865 33431 2222 3347899999999999887776
No 13
>2f73_A L-FABP, fatty acid-binding protein, liver; structural genomics, structural genomics consortium, SGC, lipid binding protein; 2.50A {Homo sapiens} SCOP: b.60.1.2
Probab=42.41 E-value=38 Score=22.67 Aligned_cols=39 Identities=8% Similarity=0.182 Sum_probs=26.6
Q ss_pred chHHHhhhhhccCC---ccC-CCCCcEEEEEeCCEEEEEecccc
Q psy1401 2 DMEKYLLERIKVGG---KTS-NFGNAVSLERQKTKVILTADVAF 41 (79)
Q Consensus 2 ~fE~fL~erIKV~g---k~g-nlg~~V~v~r~k~ki~v~s~~~f 41 (79)
+||.||++ +=|+= +.+ .+...+.|+.+++.+++.+..+|
T Consensus 36 Nfdeylka-lGV~~~~Rk~a~~~kp~~eI~~~Gd~~tikt~st~ 78 (149)
T 2f73_A 36 NFEAFMKA-IGLPEELIQKGKDIKGVSEIVQNGKHFKFTITAGS 78 (149)
T ss_dssp CHHHHHHH-TTCCHHHHHHHTTCCCEEEEEEETTEEEEEEEETT
T ss_pred CHHHHHHH-cCCCHHHHhhhccCCceEEEEEeCCEEEEEEEeCC
Confidence 68899864 23321 222 23457889999999999987775
No 14
>1mvg_A Liver basic fatty acid binding protein; beta-barrel, calycin, ten antiparallel beta strands, helix- turn-helix motif, transport protein; NMR {Gallus gallus} SCOP: b.60.1.2 PDB: 1tvq_A 1tw4_A* 1zry_A 2jn3_A* 2k62_A*
Probab=42.38 E-value=35 Score=21.91 Aligned_cols=39 Identities=13% Similarity=0.313 Sum_probs=26.4
Q ss_pred chHHHhhhhhccCC---ccC-CCCCcEEEEEeCCEEEEEecccc
Q psy1401 2 DMEKYLLERIKVGG---KTS-NFGNAVSLERQKTKVILTADVAF 41 (79)
Q Consensus 2 ~fE~fL~erIKV~g---k~g-nlg~~V~v~r~k~ki~v~s~~~f 41 (79)
+||.||++ +=|+= +.+ .+...+.|+.+++.+++.+..+|
T Consensus 13 Nfdeylka-lGv~~~~rk~a~~~kp~~ei~~~Gd~~~ikt~s~~ 55 (125)
T 1mvg_A 13 NYEEFLKA-LALPEDLIKMARDIKPIVEIQQKGDDFVVTSKTPR 55 (125)
T ss_dssp SHHHHHHH-SSSCHHHHHHHHTCCCEEEEEEETTEEEEEEECSS
T ss_pred CHHHHHHH-cCCCHHHHHhhccCCcEEEEEEeCCEEEEEEEcCC
Confidence 68888864 33321 222 23357889999999999987775
No 15
>2rcq_A CRBP-II, retinol-binding protein II, cellular; cellular retinol binding protein II, lipid-binding protein, X-RAY, cytoplasm, transport, vitamin A; HET: TLA; 1.20A {Homo sapiens} PDB: 2rct_A* 1b4m_A 1eii_A* 1opa_A 1opb_A* 1kqw_A* 1kqx_A
Probab=42.03 E-value=42 Score=22.03 Aligned_cols=39 Identities=10% Similarity=0.250 Sum_probs=26.6
Q ss_pred chHHHhhhhhccCC---cc-CCCCCcEEEEEeCCEEEEEecccc
Q psy1401 2 DMEKYLLERIKVGG---KT-SNFGNAVSLERQKTKVILTADVAF 41 (79)
Q Consensus 2 ~fE~fL~erIKV~g---k~-gnlg~~V~v~r~k~ki~v~s~~~f 41 (79)
+||.||++ +=|+= +. ..+.-.+.|+.+++.+++.+..+|
T Consensus 19 Nfdeylka-lGv~~~~rk~a~~~kp~~ei~~~Gd~~tikt~s~~ 61 (141)
T 2rcq_A 19 NFEGYMKA-LDIDFATRKIAVRLTQTKVIDQDGDNFKTKTTSTF 61 (141)
T ss_dssp SHHHHHHH-TTCCHHHHHHHTTCCCEEEEEEETTEEEEEEECSS
T ss_pred CHHHHHHH-hCCCHHHHHHhhcCCcEEEEEEeCCEEEEEEEcCC
Confidence 68899865 33321 22 233457889999999999987775
No 16
>2lba_A BABP protein; ileal bIle acid binding protein, lipid binding protein; HET: CHO; NMR {Gallus gallus}
Probab=41.54 E-value=42 Score=21.92 Aligned_cols=39 Identities=5% Similarity=0.077 Sum_probs=26.0
Q ss_pred chHHHhhhhhccCC---ccCC-CCCcEEEEEeCCEEEEEec-ccc
Q psy1401 2 DMEKYLLERIKVGG---KTSN-FGNAVSLERQKTKVILTAD-VAF 41 (79)
Q Consensus 2 ~fE~fL~erIKV~g---k~gn-lg~~V~v~r~k~ki~v~s~-~~f 41 (79)
+||.||++ +=|+= +.++ +.-.+.|+.+++++++.+. .+|
T Consensus 18 Nfdeylka-lGv~~~~rk~a~~~kp~~ei~~~Gd~~tikt~~s~~ 61 (136)
T 2lba_A 18 NYDDFVKK-IGLPADKIEMGRNCKIVTEVVQNGNDFTWTQHFPGG 61 (136)
T ss_dssp SHHHHHHH-HTCCHHHHTTTSSCCCEEEECEETTEEEEEEECTTS
T ss_pred CHHHHHHH-hCCCHHHHHhhccCCcEEEEEEcCCEEEEEEEeCCC
Confidence 68999864 33332 2222 3347889999999999887 665
No 17
>2a0a_A DER F 13; beta barrel, helix, allergen; NMR {Dermatophagoides farinae} SCOP: b.60.1.2
Probab=40.94 E-value=43 Score=21.55 Aligned_cols=39 Identities=13% Similarity=0.293 Sum_probs=26.7
Q ss_pred chHHHhhhhhccCC---ccCC-CCCcEEEEEeCCEEEEEecccc
Q psy1401 2 DMEKYLLERIKVGG---KTSN-FGNAVSLERQKTKVILTADVAF 41 (79)
Q Consensus 2 ~fE~fL~erIKV~g---k~gn-lg~~V~v~r~k~ki~v~s~~~f 41 (79)
+||.||.+ +=|+= +.++ +...+.|+.+++.+++.+..+|
T Consensus 15 Nfdeylka-lGv~~~~rk~a~~~kp~~ei~~~Gd~~~ikt~s~~ 57 (131)
T 2a0a_A 15 KFDEFLDK-LGVGFMVKTAAKTLKPTFEVAIENDQYIFRSLSTF 57 (131)
T ss_dssp SHHHHHHH-HTCCHHHHTGGGTTCCEEEEEECSSCEEEEECCTT
T ss_pred CHHHHHHH-cCCCHHHHHHhhcCCceEEEEEcCCEEEEEEEcCC
Confidence 78899865 33332 2233 3357889999999999987775
No 18
>3vg7_A Fatty acid-binding protein, liver; lfabp, S-SAD, copper kalpha, palmitic acid, lipid binding PR; HET: PLM; 1.44A {Homo sapiens} PDB: 3b2i_A* 3b2j_A* 3b2k_A* 3b2l_A* 3stk_A* 3stm_X* 3stn_A 3vg2_A* 3vg3_A* 3vg4_A* 3vg5_A* 3vg6_A* 3b2h_A* 2py1_A 2l67_A 2l68_A 2lkk_A* 2ju3_A 2ju7_A 2ju8_A* ...
Probab=40.69 E-value=43 Score=21.73 Aligned_cols=39 Identities=8% Similarity=0.170 Sum_probs=27.1
Q ss_pred chHHHhhhhhccCC---ccCC-CCCcEEEEEeCCEEEEEecccc
Q psy1401 2 DMEKYLLERIKVGG---KTSN-FGNAVSLERQKTKVILTADVAF 41 (79)
Q Consensus 2 ~fE~fL~erIKV~g---k~gn-lg~~V~v~r~k~ki~v~s~~~f 41 (79)
+||.||++ +=|+= +.++ +...+.|+.+++.+++.+..+|
T Consensus 17 Nfdeymka-lGv~~~~rk~~~~~kp~~~I~~~Gd~~~ikt~s~~ 59 (132)
T 3vg7_A 17 NFEAFMKA-IGLPEELIQKGKDIKGVSEIVQNGKHFKFTITAGS 59 (132)
T ss_dssp SHHHHHHH-TTCCHHHHHHHTTCCCEEEEEEETTEEEEEEEETT
T ss_pred CHHHHHHH-hCCCHHHHHHHHhCCCEEEEEEcCCEEEEEEEEcC
Confidence 78999865 33331 2233 3347899999999998887775
No 19
>1lpj_A Retinol-binding protein IV, cellular; cellular retinol-binding protein, CRBP, vitamin A, ILBPS, transport protein; 2.00A {Homo sapiens} SCOP: b.60.1.2
Probab=40.68 E-value=34 Score=22.07 Aligned_cols=39 Identities=13% Similarity=0.351 Sum_probs=27.2
Q ss_pred chHHHhhhhhccC---CccCCC-CCcEEEEEeCCEEEEEecccc
Q psy1401 2 DMEKYLLERIKVG---GKTSNF-GNAVSLERQKTKVILTADVAF 41 (79)
Q Consensus 2 ~fE~fL~erIKV~---gk~gnl-g~~V~v~r~k~ki~v~s~~~f 41 (79)
+||.||+. +=|+ -+.+++ .-.+.|+.+++.+++.+..+|
T Consensus 15 Nfdeylka-lGv~~~~rk~a~~~kp~~ei~~~Gd~~~ikt~s~~ 57 (133)
T 1lpj_A 15 NFEGYMLA-LGIDFATRKIAKLLKPQKVIEQNGDSFTIHTNSSL 57 (133)
T ss_dssp SHHHHHHH-HTCCHHHHHHHTTCCCEEEEEEETTEEEEEEECSS
T ss_pred CHHHHHHH-hCCCHHHHHHHHhCCCeEEEEEcCCEEEEEEEeCC
Confidence 68899865 3443 233333 357889999999999887765
No 20
>1vyf_A SM14, 14 kDa fatty acid binding protein; transport protein; HET: OLA; 1.85A {Schistosoma mansoni} SCOP: b.60.1.2 PDB: 1vyg_A* 2poa_A
Probab=39.57 E-value=49 Score=21.38 Aligned_cols=39 Identities=10% Similarity=0.253 Sum_probs=26.4
Q ss_pred chHHHhhhhhccCC---ccC-CCCCcEEEEEeCCEEEEEecccc
Q psy1401 2 DMEKYLLERIKVGG---KTS-NFGNAVSLERQKTKVILTADVAF 41 (79)
Q Consensus 2 ~fE~fL~erIKV~g---k~g-nlg~~V~v~r~k~ki~v~s~~~f 41 (79)
+||.||+. +=|+= +.+ .+...+.|+.+++.+++.+..+|
T Consensus 17 Nfdeylka-lGv~~~~rk~a~~~kp~~ei~~~Gd~~~ikt~s~~ 59 (135)
T 1vyf_A 17 NFDAVMSK-LGVSWATRQIGNTVTPTVTFTMDGDKMTMLTESTF 59 (135)
T ss_dssp SHHHHHHH-TTCCHHHHHHHTTCCCEEEEEEETTEEEEEEECSS
T ss_pred CHHHHHHH-cCCCHHHHHhhccCCceEEEEEcCCEEEEEEEcCC
Confidence 68888865 23321 222 23457889999999999987775
No 21
>3rsw_A Fatty acid-binding protein, heart; lipid carrier, molecular chaperone, heart fatty acid binding type 2 diabetes, atherosclerosis, chaperone; 2.60A {Homo sapiens} PDB: 1g5w_A 1hmr_A* 1hms_A* 1hmt_A* 2hmb_A* 1bwy_A
Probab=37.07 E-value=31 Score=23.45 Aligned_cols=39 Identities=15% Similarity=0.342 Sum_probs=26.8
Q ss_pred chHHHhhhhhccCC---ccCC-CCCcEEEEEeCCEEEEEecccc
Q psy1401 2 DMEKYLLERIKVGG---KTSN-FGNAVSLERQKTKVILTADVAF 41 (79)
Q Consensus 2 ~fE~fL~erIKV~g---k~gn-lg~~V~v~r~k~ki~v~s~~~f 41 (79)
+||.||.+ +=|+= +.++ +.-.++|+.+++.+++.+..+|
T Consensus 41 Nfdeymka-lGV~~~~Rk~a~~~kp~~eI~q~Gd~~tikt~St~ 83 (158)
T 3rsw_A 41 NFDDYMKS-LGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTF 83 (158)
T ss_dssp SHHHHHHH-TTCCHHHHHHHHHCCCEEEEEEETTEEEEEEECSS
T ss_pred CHHHHHHH-hCCCHHHHHHHHhCCCeEEEEECCCEEEEEEEccC
Confidence 79999865 33431 2222 3347899999999999887775
No 22
>3ppt_A Sodium-calcium exchanger; fatty acid transporter, lipid binding proteins, squid nerve, regulatory factor, beta-sandwich, fatty acid; HET: PAM; 1.28A {Loligo pealei} SCOP: b.60.1.0 PDB: 3pp6_A*
Probab=34.89 E-value=40 Score=21.88 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=26.6
Q ss_pred chHHHhhhhhccCC---ccCC-CCCcEEEEEeCCEEEEEecccc
Q psy1401 2 DMEKYLLERIKVGG---KTSN-FGNAVSLERQKTKVILTADVAF 41 (79)
Q Consensus 2 ~fE~fL~erIKV~g---k~gn-lg~~V~v~r~k~ki~v~s~~~f 41 (79)
+||.||.+ +=|+= +.++ +...+.|+.+++.+++.+..||
T Consensus 15 Nfdeymka-lGv~~~~rk~~~~~kp~~~I~~~Gd~~tikt~s~~ 57 (133)
T 3ppt_A 15 NFDDYMKA-VGVGMVMRKMANAATPTQEIKIDGDSWSIKTSTTF 57 (133)
T ss_dssp SHHHHHHH-HTCCHHHHHHHHHCCCEEEEEEETTEEEEEEECSS
T ss_pred CHHHHHHH-hCCCHHHHhhhhcCCcEEEEEECCCEEEEEEEeCC
Confidence 68999865 33321 1222 3347899999999999988776
No 23
>1b56_A Fatty acid binding protein; lipid-binding, fatty acid transport, beta barrel, lipid binding protein; HET: PLM; 2.05A {Homo sapiens} SCOP: b.60.1.2 PDB: 1jjj_A
Probab=32.78 E-value=45 Score=21.56 Aligned_cols=39 Identities=13% Similarity=0.270 Sum_probs=26.1
Q ss_pred chHHHhhhhhccCC---ccCC-CCCcEEEEEeCCEEEEEecccc
Q psy1401 2 DMEKYLLERIKVGG---KTSN-FGNAVSLERQKTKVILTADVAF 41 (79)
Q Consensus 2 ~fE~fL~erIKV~g---k~gn-lg~~V~v~r~k~ki~v~s~~~f 41 (79)
+||.||+. +=|+= +.++ +...+.|+.+++.+++.+..+|
T Consensus 18 Nfdeylka-lGv~~~~rk~a~~~kp~~ei~~~Gd~~tikt~s~~ 60 (135)
T 1b56_A 18 GFDEYMKE-LGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTL 60 (135)
T ss_dssp SHHHHHHH-HTCCHHHHHHHHHCCCEEEEEEETTEEEEEEECSS
T ss_pred CHHHHHHH-cCCCHHHHHHhhcCCcEEEEEEcCCEEEEEEEcCC
Confidence 68888865 33321 2222 3347889999999999887775
No 24
>1mdc_A Insect fatty acid binding protein; HET: PLM; 1.75A {Manduca sexta} SCOP: b.60.1.2
Probab=32.29 E-value=47 Score=21.47 Aligned_cols=39 Identities=8% Similarity=0.027 Sum_probs=25.7
Q ss_pred chHHHhhhhhccCC---cc-CCCCCcEEEEEeCCEEEEEecccc
Q psy1401 2 DMEKYLLERIKVGG---KT-SNFGNAVSLERQKTKVILTADVAF 41 (79)
Q Consensus 2 ~fE~fL~erIKV~g---k~-gnlg~~V~v~r~k~ki~v~s~~~f 41 (79)
+||.||.+ +=|+= +. ..+...+.|+.+++.+++.+..+|
T Consensus 15 Nfdeylka-lGv~~~~rk~a~~~kp~~ei~~~Gd~~~ikt~s~~ 57 (132)
T 1mdc_A 15 NFDGFLKS-AGLSDDKIQALVSDKPTQKMEANGDSYSNTSTGGG 57 (132)
T ss_dssp SHHHHHHT-TTCCHHHHHHHHHCCCEEEEEEETTEEEEEEESTT
T ss_pred CHHHHHHH-hCCCHHHHhhhccCCceEEEEEeCCEEEEEEEcCC
Confidence 68888864 22221 11 223357889999999999987775
No 25
>1eal_A Gastrotropin, ileal lipid binding protein; intracellular lipid binding protein, bIle acid binding, ileal epithelium, fatty acid binding protein; NMR {Sus scrofa} SCOP: b.60.1.2 PDB: 1eio_A* 1o1u_A 1o1v_A*
Probab=31.73 E-value=48 Score=21.22 Aligned_cols=39 Identities=0% Similarity=0.115 Sum_probs=25.5
Q ss_pred chHHHhhhhhccCC---ccCC-CCCcEEEEEeCCEEEEEec-ccc
Q psy1401 2 DMEKYLLERIKVGG---KTSN-FGNAVSLERQKTKVILTAD-VAF 41 (79)
Q Consensus 2 ~fE~fL~erIKV~g---k~gn-lg~~V~v~r~k~ki~v~s~-~~f 41 (79)
+||.||++ +=|+= +.++ +...+.|+.+++.+++.+. .+|
T Consensus 13 Nfdeymka-lGv~~~~rk~a~~~kp~~ei~~~Gd~~~ikt~~s~~ 56 (127)
T 1eal_A 13 NYDEFMKR-LALPSDAIDKARNLKIISEVKQDGQNFTWSQQYPGG 56 (127)
T ss_dssp CTTHHHHH-HTCCHHHHHHHTTCCEEEEEEESSSEEEEEEECSSS
T ss_pred CHHHHHHH-hCCCHHHHHhhhcCCcEEEEEEcCCEEEEEEEECCC
Confidence 68888864 22321 2223 3347889999999999887 665
No 26
>2g7b_A Cellular retinoic acid-binding protein 2; crabpii, retinoids, beta barrel, crystallography, X-RAY, high resolution, schiff base; HET: AZE; 1.18A {Homo sapiens} PDB: 3d97_A* 3fa8_A 3i17_B 3fa7_A* 3fa9_A 3d95_A 3cwk_A 3f8a_A* 3fep_A* 3fek_B 3fa6_A 1bm5_A 1xca_A 3fel_A* 3f9d_A* 3cr6_A* 3fen_A 1blr_A 1cbq_A* 1cbs_A* ...
Probab=31.62 E-value=43 Score=21.65 Aligned_cols=39 Identities=15% Similarity=0.205 Sum_probs=26.7
Q ss_pred chHHHhhhhhccCC---ccCC---CCCcEEEEEeCCEEEEEecccc
Q psy1401 2 DMEKYLLERIKVGG---KTSN---FGNAVSLERQKTKVILTADVAF 41 (79)
Q Consensus 2 ~fE~fL~erIKV~g---k~gn---lg~~V~v~r~k~ki~v~s~~~f 41 (79)
+||.||++ +=|+= +.++ +.-.+.|+.+++.+++.+..+|
T Consensus 14 Nfdeylka-lGv~~~~rk~a~~~~~kp~~ei~~~Gd~~tikt~s~~ 58 (137)
T 2g7b_A 14 NFEELLKV-LGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTV 58 (137)
T ss_dssp CHHHHHHH-TTCCHHHHHHHHHHHSSCEEEEEEETTEEEEEEEETT
T ss_pred CHHHHHHH-cCCCHHHHhhhhcccCCceEEEEECCCEEEEEEEECC
Confidence 68899875 23321 2232 4457889999999999887765
No 27
>1crb_A Cellular retinol binding protein; cellular lipophilic transport protein; HET: RTL; 2.10A {Rattus rattus} SCOP: b.60.1.2 PDB: 1mx7_A 1mx8_A* 1jbh_A 1kgl_A*
Probab=31.55 E-value=49 Score=21.37 Aligned_cols=39 Identities=21% Similarity=0.359 Sum_probs=25.9
Q ss_pred chHHHhhhhhccCC---ccCC-CCCcEEEEEeCCEEEEEecccc
Q psy1401 2 DMEKYLLERIKVGG---KTSN-FGNAVSLERQKTKVILTADVAF 41 (79)
Q Consensus 2 ~fE~fL~erIKV~g---k~gn-lg~~V~v~r~k~ki~v~s~~~f 41 (79)
+||.||++ +=|+= +.++ +.-.+.|+.+++.+++.+..+|
T Consensus 15 Nfdeylka-lGv~~~~rk~a~~~kp~~ei~~~Gd~~~ikt~s~~ 57 (134)
T 1crb_A 15 NFEEYLRA-LDVNVALRKIANLLKPDKEIVQDGDHMIIRTLSTF 57 (134)
T ss_dssp SHHHHHHT-TTCCHHHHHHHHHCCCEEEEEEETTEEEEEEECSS
T ss_pred CHHHHHHH-cCCCHHHHHHhhcCCceEEEEEcCCEEEEEEecCC
Confidence 68888864 22321 2222 3357889999999999887775
No 28
>1ftp_A Muscle fatty acid binding protein; binding protein(fatty acid); 2.20A {Schistocerca gregaria} SCOP: b.60.1.2 PDB: 2flj_A*
Probab=30.80 E-value=72 Score=20.53 Aligned_cols=39 Identities=31% Similarity=0.465 Sum_probs=26.1
Q ss_pred chHHHhhhhhccCC---ccCC-CCCcEEEEE-eCCEEEEEecccc
Q psy1401 2 DMEKYLLERIKVGG---KTSN-FGNAVSLER-QKTKVILTADVAF 41 (79)
Q Consensus 2 ~fE~fL~erIKV~g---k~gn-lg~~V~v~r-~k~ki~v~s~~~f 41 (79)
+||.||.+ +=|+= +.++ +...+.|+. +++.+++.+..+|
T Consensus 16 Nfdeylka-lGv~~~~rk~a~~~kp~~ei~~~~Gd~~~ikt~s~~ 59 (133)
T 1ftp_A 16 NFEEYMKA-IGVGAIERKAGLALSPVIELEILDGDKFKLTSKTAI 59 (133)
T ss_dssp SHHHHHHH-TTCCHHHHHHHTTCCCEEEEEECSSSEEEEEEECSS
T ss_pred CHHHHHHH-hCCCHHHHHHhhcCCceEEEEEcCCCEEEEEEEcCC
Confidence 68888865 33321 2233 335788999 8999999887775
No 29
>1fdq_A Fatty acid-binding protein, brain; omega-3, long chain poly unsaturated fatty acid, lipid binding protein; HET: HXA; 2.10A {Homo sapiens} SCOP: b.60.1.2 PDB: 1fe3_A* 1jjx_A
Probab=30.40 E-value=53 Score=21.07 Aligned_cols=39 Identities=18% Similarity=0.352 Sum_probs=25.9
Q ss_pred chHHHhhhhhccCC---ccC-CCCCcEEEEEeCCEEEEEecccc
Q psy1401 2 DMEKYLLERIKVGG---KTS-NFGNAVSLERQKTKVILTADVAF 41 (79)
Q Consensus 2 ~fE~fL~erIKV~g---k~g-nlg~~V~v~r~k~ki~v~s~~~f 41 (79)
+||.||++ +=|+= +.+ .+...+.|+.+++.+++.+..+|
T Consensus 15 Nfdeylka-lGv~~~~rk~a~~~kp~~ei~~~Gd~~~ikt~s~~ 57 (131)
T 1fdq_A 15 NFDEYMKA-LGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTF 57 (131)
T ss_dssp SHHHHHHH-TTCCHHHHHHHHHCCCEEEEEEETTEEEEEEECSS
T ss_pred CHHHHHHH-cCCCHHHHHHHhcCCCeEEEEEcCCEEEEEEecCC
Confidence 68888865 33321 122 23347889999999999887775
No 30
>2lpe_A Kinase suppressor of RAS 1; SAM domain, CC-SAM, coiled-coil, signaling protein, scaffold protein; NMR {Mus musculus}
Probab=30.28 E-value=4.3 Score=28.27 Aligned_cols=15 Identities=20% Similarity=0.616 Sum_probs=11.5
Q ss_pred cccceeEEEeecCce
Q psy1401 58 NLRDWLRVVANKKDS 72 (79)
Q Consensus 58 ~LrdwlrVva~~K~~ 72 (79)
.|++|||||--++++
T Consensus 85 ~l~~WLrvVgl~~es 99 (149)
T 2lpe_A 85 RFSDWLYIFNVRPEV 99 (149)
T ss_dssp CSTTTHHHHTCCHHH
T ss_pred hHHHHHHHhccCHHH
Confidence 589999999765543
No 31
>2lo0_A Uncharacterized protein; dimerization, homodimerization, protein binding; NMR {Aspergillus fumigatus}
Probab=27.86 E-value=19 Score=22.41 Aligned_cols=12 Identities=33% Similarity=0.664 Sum_probs=10.2
Q ss_pred chHHHhhhhhcc
Q psy1401 2 DMEKYLLERIKV 13 (79)
Q Consensus 2 ~fE~fL~erIKV 13 (79)
|++-||++|||=
T Consensus 45 DL~gFL~qRlkD 56 (75)
T 2lo0_A 45 DLQGFLEQRLKD 56 (75)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHhcCC
Confidence 578899999993
No 32
>1o8v_A Fatty acid binding protein homolog; lipid binding protein, hydatid disease, fatty-acid transport; HET: PLM; 1.60A {Echinococcus granulosus} SCOP: b.60.1.2
Probab=27.83 E-value=62 Score=20.86 Aligned_cols=39 Identities=15% Similarity=0.199 Sum_probs=25.8
Q ss_pred chHHHhhhhhccCC---ccCC-CCCcEEEEE-eCCEEEEEecccc
Q psy1401 2 DMEKYLLERIKVGG---KTSN-FGNAVSLER-QKTKVILTADVAF 41 (79)
Q Consensus 2 ~fE~fL~erIKV~g---k~gn-lg~~V~v~r-~k~ki~v~s~~~f 41 (79)
+||.||+. +=|+= +.++ +...+.|+. +++.+++.+..+|
T Consensus 16 Nfdeylka-lGv~~~~rk~a~~~kp~~ei~~~~Gd~~~ikt~s~~ 59 (134)
T 1o8v_A 16 GFDKIMER-LGVDFVTRKMGNLVKPNLIVTDLGGGKYKMRSESTF 59 (134)
T ss_dssp SHHHHHHH-HTCCHHHHHHHHHCCCEEEEEEEETTEEEEEEECSS
T ss_pred CHHHHHHH-cCCCHHHHHHhhcCCceEEEEEcCCCEEEEEEEcCC
Confidence 68888865 33321 1222 334788999 9999999887775
No 33
>3sgr_A Tandem repeat of amyloid-related segment of alpha crystallin residues 90-100 mutant...; amyloid oligomer, beta cylindrin, protein fibril; 2.17A {Homo sapiens}
Probab=24.21 E-value=5 Score=20.31 Aligned_cols=16 Identities=38% Similarity=0.756 Sum_probs=8.3
Q ss_pred hhhccCCccCCCCCcE
Q psy1401 9 ERIKVGGKTSNFGNAV 24 (79)
Q Consensus 9 erIKV~gk~gnlg~~V 24 (79)
+-|.|+||..-||+.|
T Consensus 8 dvievggklkvlgdvi 23 (25)
T 3sgr_A 8 DVIEVGGKLKVLGDVI 23 (26)
T ss_dssp EEEEETTEEEEEEEEE
T ss_pred eeeeeCcEEEEeeeEE
Confidence 3455555555555444
No 34
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=23.24 E-value=84 Score=19.60 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=27.6
Q ss_pred chHHHhhhhhccCCccCCCCCcEEEEEeCCEEEEEe-ccc
Q psy1401 2 DMEKYLLERIKVGGKTSNFGNAVSLERQKTKVILTA-DVA 40 (79)
Q Consensus 2 ~fE~fL~erIKV~gk~gnlg~~V~v~r~k~ki~v~s-~~~ 40 (79)
.||+-|.|-|. .+..+++.|+-+-++|.+.+.- .+|
T Consensus 14 afekalkemir---qarkfagtvtytldgndleiritgvp 50 (85)
T 2kl8_A 14 AFEKALKEMIR---QARKFAGTVTYTLDGNDLEIRITGVP 50 (85)
T ss_dssp HHHHHHHHHHH---HHTTTTCEEEEEECSSCEEEEEESCC
T ss_pred HHHHHHHHHHH---HHHhhcceEEEEecCCeeEEEEecCh
Confidence 48888999887 6777888999999988755542 344
No 35
>2ekd_A Hypothetical protein PH0250; NPPSFA, national project on protein structural and functiona analyses; 2.30A {Pyrococcus horikoshii}
Probab=22.27 E-value=30 Score=24.52 Aligned_cols=34 Identities=21% Similarity=0.506 Sum_probs=22.3
Q ss_pred hhccCCccCCCCCcEEEEEeCCEEEEEeccccchHHHHHHH
Q psy1401 10 RIKVGGKTSNFGNAVSLERQKTKVILTADVAFSKRYLKYLT 50 (79)
Q Consensus 10 rIKV~gk~gnlg~~V~v~r~k~ki~v~s~~~fsKrYlKYLt 50 (79)
=||++|+. +.|+.| .+|.++++..|-+.|-+-+-
T Consensus 74 VIKiGG~~-~~GnVv------~ri~i~~d~i~~~~Y~~~~~ 107 (207)
T 2ekd_A 74 VIKMGGTK-DIGRVI------GRLNISKYVISEQEYMEIVS 107 (207)
T ss_dssp EEEESCSC-CCSEEE------EEECCBTTBCCHHHHHHHHT
T ss_pred EEEeccee-eeeeEE------EEEeCCCchHHHHHHHHHHH
Confidence 36778866 667665 46777777556777776443
No 36
>1mgs_A Human melanoma growth stimulatory activity; chemokine(growth factor); NMR {Homo sapiens} SCOP: d.9.1.1 PDB: 1msg_A 1msh_A 1qnk_A
Probab=22.11 E-value=69 Score=18.54 Aligned_cols=31 Identities=10% Similarity=0.163 Sum_probs=23.3
Q ss_pred cEEEEEeCCEEEEEeccccchHHHHHHHHHH
Q psy1401 23 AVSLERQKTKVILTADVAFSKRYLKYLTKKY 53 (79)
Q Consensus 23 ~V~v~r~k~ki~v~s~~~fsKrYlKYLtKKy 53 (79)
.|-.++.+..|-+..+.|..|++++.|-++-
T Consensus 40 VIf~tk~g~~vC~dP~~~wVk~~i~~l~~~~ 70 (73)
T 1mgs_A 40 VIATLKNGRKACLNPASPIVKKIIEKMLNSD 70 (73)
T ss_dssp EEEEETTSCEEEECTTSHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCEEecCCChHHHHHHHHHHHhhc
Confidence 3444444557888999999999999987753
No 37
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=21.18 E-value=1.2e+02 Score=17.22 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=15.3
Q ss_pred CCcEEEEEeCCEEEEEecc
Q psy1401 21 GNAVSLERQKTKVILTADV 39 (79)
Q Consensus 21 g~~V~v~r~k~ki~v~s~~ 39 (79)
|+.|.++.+++.|.+...-
T Consensus 39 Gd~l~i~~~~~~IiL~p~~ 57 (59)
T 1yfb_A 39 KDALEIYVDDEKIILKKYK 57 (59)
T ss_dssp TCEEEEEEETTEEEEEECC
T ss_pred CCEEEEEEECCEEEEEECC
Confidence 6789999998999887643
Done!