RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1401
(79 letters)
>gnl|CDD|201965 pfam01776, Ribosomal_L22e, Ribosomal L22e protein family.
Length = 112
Score = 133 bits (338), Expect = 1e-42
Identities = 56/78 (71%), Positives = 65/78 (83%)
Query: 2 DMEKYLLERIKVGGKTSNFGNAVSLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLRD 61
+ EK+L ERIKV GKT N GN V++ER K K+ +T+++ FSKRYLKYLTKKYLKKNNLRD
Sbjct: 25 NFEKFLHERIKVNGKTGNLGNKVTIERDKNKITVTSEIPFSKRYLKYLTKKYLKKNNLRD 84
Query: 62 WLRVVANKKDSYELRYFQ 79
WLRVVA KDSYELRYF
Sbjct: 85 WLRVVATSKDSYELRYFN 102
>gnl|CDD|173474 PTZ00198, PTZ00198, 60S ribosomal protein L22; Provisional.
Length = 122
Score = 103 bits (259), Expect = 1e-30
Identities = 47/76 (61%), Positives = 58/76 (76%)
Query: 4 EKYLLERIKVGGKTSNFGNAVSLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLRDWL 63
E++L +RIKV GKT N GN V + R+K K+ +T + FSKRYLKYLTKKYLKK LRD+L
Sbjct: 40 EQFLQDRIKVDGKTGNLGNKVRVSREKNKITVTTTIPFSKRYLKYLTKKYLKKKQLRDFL 99
Query: 64 RVVANKKDSYELRYFQ 79
RVVA K +YEL+YF
Sbjct: 100 RVVATGKGTYELKYFN 115
>gnl|CDD|236076 PRK07710, PRK07710, acetolactate synthase catalytic subunit;
Reviewed.
Length = 571
Score = 27.4 bits (61), Expect = 0.63
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 39 VAFSKRYLKYLTKKYLKKNNLRDWLRVVANKKDSYELRY 77
VA +K+ L+ L ++ KK N +WL ++ N K+ Y L Y
Sbjct: 330 VADAKQALQVLLQQEGKKENHHEWLSLLKNWKEKYPLSY 368
>gnl|CDD|215543 PLN03028, PLN03028, pyrophosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 610
Score = 27.4 bits (61), Expect = 0.79
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 4 EKYLLERIKVGGKTSNFGNAVSLERQKTKVILTADVAFSKRYLKYLTKK 52
EKY +G K S+ +L+ VIL +VA SK L +TK+
Sbjct: 249 EKYYYFIRLMGRKASHVALECALQSHPNMVILGEEVAASKLTLFDITKQ 297
>gnl|CDD|223463 COG0386, BtuE, Glutathione peroxidase [Posttranslational
modification, protein turnover, chaperones].
Length = 162
Score = 26.1 bits (58), Expect = 1.5
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 21 GNAVSLERQKTKVILTADVA----FSKRY--LKYLTKKYLKKN 57
G VSL K KV+L + A F+ +Y L+ L KKY K
Sbjct: 15 GEPVSLSDYKGKVLLIVNTASKCGFTPQYEGLEALYKKYKDKG 57
>gnl|CDD|220565 pfam10095, DUF2333, Uncharacterized protein conserved in bacteria
(DUF2333). Members of this family of hypothetical
bacterial proteins have no known function.
Length = 337
Score = 26.1 bits (58), Expect = 1.8
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
Query: 43 KRYLKYLTKK-------YLKKNNLRDWLRVVANKKDSYELR 76
KRYL L+ Y + +NLR+WL V + S R
Sbjct: 164 KRYLARLSDTNQNDAQFYARADNLRNWLEDVEKRLGSLSQR 204
>gnl|CDD|238207 cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family;
tetrameric selenoenzymes that catalyze the reduction of
a variety of hydroperoxides including lipid
peroxidases, using GSH as a specific electron donor
substrate. GSH peroxidase contains one selenocysteine
residue per subunit, which is involved in catalysis.
Different isoenzymes are known in mammals,which are
involved in protection against reactive oxygen species,
redox regulation of many metabolic processes,
peroxinitrite scavenging, and modulation of
inflammatory processes.
Length = 152
Score = 25.9 bits (58), Expect = 1.9
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 17 TSNFGNAVSLERQKTKVILTADVA----FSKRY--LKYLTKKY 53
G VSL + K KV+L +VA F+ +Y L+ L +KY
Sbjct: 8 KDIDGEPVSLSKYKGKVLLIVNVASKCGFTPQYEGLEALYEKY 50
>gnl|CDD|99848 cd06145, REX1_like, DEDDh 3'-5' exonuclease domain of RNA
exonuclease 1, -3 and similar eukaryotic proteins. This
subfamily is composed of RNA exonuclease 1 (REX1 or
Rex1p), REX3 (or Rex3p), and similar eukaryotic
proteins. In yeast, REX1 and REX3 are required for 5S
rRNA and MRP (mitochondrial RNA processing) RNA
maturation, respectively. They are DEDDh-type DnaQ-like
3'-5' exonucleases containing three conserved sequence
motifs termed ExoI, ExoII and ExoIII, with a specific
Hx(4)D conserved pattern at ExoIII. These motifs are
clustered around the active site and contain four
conserved acidic residues that serve as ligands for the
two metal ions required for catalysis. REX1 is the major
exonuclease responsible for pre-tRNA trail trimming and
may also be involved in nuclear CCA turnover. REX
proteins function in the processing and maturation of
many RNA species, similar to the function of Escherichia
coli RNase T.
Length = 150
Score = 25.9 bits (58), Expect = 1.9
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 42 SKRYLKYLTKKYLKK 56
K LK L KKYL +
Sbjct: 113 YKPSLKNLAKKYLGR 127
>gnl|CDD|225744 COG3203, OmpC, Outer membrane protein (porin) [Cell envelope
biogenesis, outer membrane].
Length = 354
Score = 25.8 bits (57), Expect = 2.7
Identities = 9/56 (16%), Positives = 16/56 (28%), Gaps = 1/56 (1%)
Query: 16 KTSNFGNAVSLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLRDWLRVVANKKD 71
K + + K V + A FSK Y+ ++ + D
Sbjct: 289 KGKDLNGVTDKDLVKY-VDVGATYYFSKNTSTYVDYGINLLDSDDNATVPGGGNTD 343
>gnl|CDD|151444 pfam10997, DUF2837, Protein of unknown function (DUF2837). This
bacterial family of proteins has no known function.
Length = 254
Score = 25.3 bits (56), Expect = 3.2
Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 4/46 (8%)
Query: 20 FGNAVSLERQKTKVILTADVAFSKRYLKYLTKKYL---KKNNLRDW 62
F A+ + V FS LK L KK + L+
Sbjct: 95 FSRAIIHFEETGSVPRLVVKGFSISGLKRL-KKSVRLPSLEYLKQL 139
>gnl|CDD|182034 PRK09698, PRK09698, D-allose kinase; Provisional.
Length = 302
Score = 25.3 bits (56), Expect = 3.8
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 39 VAFSKRYLKYLTKKYLKKNNLRDWLRVVANKKDSY 73
AF + L + +KYL+K + +R + +
Sbjct: 250 PAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDF 284
>gnl|CDD|235287 PRK04342, PRK04342, DNA topoisomerase VI subunit A; Provisional.
Length = 367
Score = 25.2 bits (56), Expect = 4.3
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 40 AFSKRYLKYLTKKYL 54
A + + LK++T +YL
Sbjct: 342 ALASKGLKFVTDEYL 356
>gnl|CDD|180368 PRK06048, PRK06048, acetolactate synthase 3 catalytic subunit;
Reviewed.
Length = 561
Score = 25.1 bits (55), Expect = 4.3
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 39 VAFSKRYLKYLTKKYLKKNNLRDWLRVVANKKDSYELRYF 78
V +K+ LK L K Y++ + ++WL + K Y L+Y
Sbjct: 322 VGDAKQVLKSLIK-YVQYCDRKEWLDKINQWKKEYPLKYK 360
>gnl|CDD|236966 PRK11747, dinG, ATP-dependent DNA helicase DinG; Provisional.
Length = 697
Score = 25.2 bits (56), Expect = 4.6
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 23 AVSLERQKTKVILTADVA 40
++ +K VI TA VA
Sbjct: 72 PIARAEKKKLVISTATVA 89
>gnl|CDD|216698 pfam01785, Closter_coat, Closterovirus coat protein. This family
consist of coat proteins from closteroviruses a member
of the closteroviridae. The viral coat protein
encapsulates and protects the viral genome. Both the
large cp1 and smaller cp2 coat protein originate from
the same primary transcript. Members of the
closteroviridae include Sugar beet yellow virus and
Grapevine leafroll-associated virus, closteroviruses
have a positive strand ssRNA genome with no DNA stage
during replication.
Length = 188
Score = 24.6 bits (54), Expect = 6.2
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 16 KTSNFGNAVSLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLRDWLR 64
K + G+ K + AD ++K L K N LR + R
Sbjct: 60 KVAYNGSNTYSIGGKEYTVKDADF---FNFVKSLKLLRNKPNALRQFAR 105
>gnl|CDD|132835 cd00147, cPLA2_like, Cytosolic phospholipase A2, catalytic domain;
hydrolyses arachidonyl phospholipids. Catalytic domain
of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4)
hydrolyzes the sn-2-acyl ester bond of phospholipids to
release arachidonic acid. At the active site, cPLA2
contains a serine nucleophile through which the
catalytic mechanism is initiated. The active site is
partially covered by a solvent-accessible flexible lid.
cPLA2 displays interfacial activation as it exists in
both "closed lid" and "open lid" forms. Movement of the
cPLA2 lid possibly exposes a greater hydrophobic surface
and the active site. cPLA2 belongs to the alpha-beta
hydrolase family which is identified by a characteristic
nucleophile elbow with a consensus sequence of
Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu =
nucleophile). Calcium is required for cPLA2 to bind with
membranes or phospholipids. Group IV cPLA2 includes six
intercellular enzymes: cPLA2alpha, cPLA2beta,
cPLA2gamma, cPLA2delta, cPLA2epsilon, and cPLA2zeta.
Length = 438
Score = 24.5 bits (54), Expect = 6.8
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 17 TSNFGNAVSLERQKTKVILTADVAFSKRYLKYLTKKYLKK 56
S ++E K VI + + FS LKY K+ +K
Sbjct: 97 WSQKDLDEAIEWLKRHVIKSPLLLFSPERLKYYAKELEEK 136
>gnl|CDD|217385 pfam03140, DUF247, Plant protein of unknown function. The
function of the plant proteins constituting this family
is unknown.
Length = 387
Score = 24.1 bits (53), Expect = 8.8
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 43 KRYLKYLTKKYLKKNNLRDWLRVVAN 68
RYL + + +L D L V
Sbjct: 41 WRYLNRFLDRTGRGLSLEDLLAAVRE 66
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.373
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,981,164
Number of extensions: 303816
Number of successful extensions: 403
Number of sequences better than 10.0: 1
Number of HSP's gapped: 403
Number of HSP's successfully gapped: 32
Length of query: 79
Length of database: 10,937,602
Length adjustment: 48
Effective length of query: 31
Effective length of database: 8,808,610
Effective search space: 273066910
Effective search space used: 273066910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)