RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1401
(79 letters)
>3izc_W 60S ribosomal protein RPL22 (L22E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_W
3u5e_U 3u5i_U
Length = 121
Score = 107 bits (268), Expect = 2e-32
Identities = 39/78 (50%), Positives = 51/78 (65%)
Query: 2 DMEKYLLERIKVGGKTSNFGNAVSLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLRD 61
KYL++ IKV G N GNAV++ T V + + FS +YLKYLTKKYLKKN LRD
Sbjct: 32 SYAKYLIDHIKVEGAVGNLGNAVTVTEDGTVVTVVSTAKFSGKYLKYLTKKYLKKNQLRD 91
Query: 62 WLRVVANKKDSYELRYFQ 79
W+R V+ K + Y L ++Q
Sbjct: 92 WIRFVSTKTNEYRLAFYQ 109
>3iz5_W 60S ribosomal protein L22 (L22E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_W
Length = 130
Score = 104 bits (261), Expect = 4e-31
Identities = 54/81 (66%), Positives = 65/81 (80%), Gaps = 3/81 (3%)
Query: 2 DMEKYLLERIKV-GGKTSNFGNAVSLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLR 60
+EK+L ERIKV GGK N G++V++ R KTKV +T+D AFSKRYLKYLTKKYLKK+N+R
Sbjct: 40 SLEKFLQERIKVAGGKAGNLGDSVTVTRDKTKVTVTSDGAFSKRYLKYLTKKYLKKHNVR 99
Query: 61 DWLRVVANKKD--SYELRYFQ 79
DWLRV+A KD YELRYF
Sbjct: 100 DWLRVIAANKDRNVYELRYFN 120
>4a18_M RPL22, ribosomal protein L22; ribosome, eukaryotic initiation
factor 6, EIF6, transla large ribosomal subunit, rRNA;
3.52A {Tetrahymena thermophila} PDB: 4a19_M 4a1b_M
4a1d_M
Length = 118
Score = 103 bits (258), Expect = 1e-30
Identities = 37/76 (48%), Positives = 54/76 (71%)
Query: 4 EKYLLERIKVGGKTSNFGNAVSLERQKTKVILTADVAFSKRYLKYLTKKYLKKNNLRDWL 63
++L +IKVGGK N G +++ K+ + + + FSKRYLKYLTKKYLKK +LR++L
Sbjct: 36 AEFLKSKIKVGGKLGNLGENITISNDDKKINVQSTIPFSKRYLKYLTKKYLKKQDLRNYL 95
Query: 64 RVVANKKDSYELRYFQ 79
V ++ K+SY+LRYF
Sbjct: 96 YVTSSDKNSYQLRYFN 111
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Length = 195
Score = 26.2 bits (57), Expect = 1.1
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 44 RYLKYLTKKYLKKNNLRDW 62
R + +K Y K R +
Sbjct: 3 RAPRTYSKTYSTKKPRRPY 21
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET:
U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Length = 189
Score = 24.6 bits (54), Expect = 4.1
Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 10/63 (15%)
Query: 5 KYLLERIKVGGKTSNFGNAVSLERQKTKVILTADVAFSKRY----------LKYLTKKYL 54
+ L ++ VG + A+ + + T+ R L+ L+++ L
Sbjct: 79 QLLKGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLL 138
Query: 55 KKN 57
K+
Sbjct: 139 HKS 141
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1;
protein-nucleotide complex, ATP-binding, endoplasmic
reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces
cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A*
3sdj_A*
Length = 434
Score = 24.4 bits (53), Expect = 4.4
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 9 ERIKVGGKTSNFGNAVSLERQKTKVILTAD--VAFSKRYLKYLTK--KYLKKNNLRDWLR 64
+R+++ + + + VI + D V F K ++ L + KY + L D LR
Sbjct: 314 DRLEIENRDPPSALLMKFDAGSDFVIPSGDWTVKFDKTFMDNLERYRKY-HSSKLMDLLR 372
Query: 65 VVANKKDSYE 74
+ NK +
Sbjct: 373 ALRNKYHHFM 382
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 23.8 bits (52), Expect = 6.7
Identities = 4/41 (9%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 30 KTKVILTADVAFSKRYLKYLTKKYLKKNNLRDWLRVVANKK 70
+ I + +R + + +++ ++ A K+
Sbjct: 175 PVERIEDQRIF--ERAFEIFARSIGIESSFSEFFEDFARKR 213
>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold,
epididymal androgen related protein, struc genomics,
structural genomics consortium; 2.00A {Homo sapiens}
Length = 215
Score = 23.9 bits (52), Expect = 7.5
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 16 KTSNFGNAVSLERQKTKVILTADVA----FSKRY--LKYLTKKY 53
N VS ++ K IL +VA + +Y L L ++
Sbjct: 41 IALNKNEYVSFKQYVGKHILFVNVATYCGLTAQYPELNALQEEL 84
>4evq_A Putative ABC transporter subunit, substrate-bindi component;
structural genomics, PSI-biology, midwest center for
structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas
palustris} PDB: 4evr_A
Length = 375
Score = 23.4 bits (51), Expect = 9.1
Identities = 6/28 (21%), Positives = 9/28 (32%), Gaps = 1/28 (3%)
Query: 30 KTKVILTADVAFSKRYLKYLTKKYLKKN 57
K V +T A + + KK
Sbjct: 152 KKAVTVTWKYAAGEEMVSG-FKKSFTAG 178
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.373
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,202,401
Number of extensions: 56812
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 16
Length of query: 79
Length of database: 6,701,793
Length adjustment: 48
Effective length of query: 31
Effective length of database: 5,361,585
Effective search space: 166209135
Effective search space used: 166209135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.4 bits)