BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14013
(792 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8WVM7|STAG1_HUMAN Cohesin subunit SA-1 OS=Homo sapiens GN=STAG1 PE=1 SV=3
Length = 1258
Score = 568 bits (1465), Expect = e-161, Method: Compositional matrix adjust.
Identities = 318/660 (48%), Positives = 420/660 (63%), Gaps = 107/660 (16%)
Query: 102 LVDEWIEQYKSHKESALLSLMQFFINGSGCRGKITSNMANNMEHAAIIRKMTEEFDEESG 161
+VD+WIE YK ++ ALL L+ FFI SGCRG + M NM++A IIRKMTEEFDE+SG
Sbjct: 101 VVDDWIESYKQDRDIALLDLINFFIQCSGCRGTVRIEMFRNMQNAEIIRKMTEEFDEDSG 160
Query: 162 EYPLIMAGQQWKKFRSNFCDFVAHLVKQCQYSIIYDQYLMDNVISLLTGLSDSQVRAFRH 221
+YPL M G QWKKFRSNFC+F+ L++QCQYSIIYD+Y+MD VISLLTGLSDSQVRAFRH
Sbjct: 161 DYPLTMPGPQWKKFRSNFCEFIGVLIRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRH 220
Query: 222 TATLAAMKLMTALVDVALVVSVNLDNTQRQYESERQKTRDKRASDRLESLMTKRQELE-- 279
T+TLAAMKLMTALV+VAL +S++ DNTQRQYE+ER K KRA++RLE L+ KR+EL+
Sbjct: 221 TSTLAAMKLMTALVNVALNLSIHQDNTQRQYEAERNKMIGKRANERLELLLQKRKELQEN 280
Query: 280 ----ENM-----------------DEIKNM---------------------LTYM----- 292
ENM EI+ + L Y+
Sbjct: 281 QDEIENMMNSIFKGIFVHRYRDAIAEIRAICIEEIGVWMKMYSDAFLNDSYLKYVGWTLH 340
Query: 293 -------FKSVFALQPLYASEDLKGKLELFTSKFKDRIVAMTLDKEYDVAVHAVRLVISI 345
K + ALQ LY + +L KLELFT++FKDRIV+MTLDKEYDVAV A+RLV I
Sbjct: 341 DRQGEVRLKCLKALQSLYTNRELFPKLELFTNRFKDRIVSMTLDKEYDVAVEAIRLVTLI 400
Query: 346 L------------------------------------KLFVPDDEFANVHTKGGKRRLKN 369
L KLF D A KRR +N
Sbjct: 401 LHGSEEALSNEDCENVYHLVYSAHRPVAVAAGEFLHKKLFSRHDPQAEEAL--AKRRGRN 458
Query: 370 TP---LIRDLVQFFIESELHEHGAYLVDSLIESN-EMMKDWECMTDLLLEEPNPKYNEEP 425
+P LIR LV FF+ESELHEH AYLVDSL ES+ E++KDWECMT+LLLEEP EE
Sbjct: 459 SPNGNLIRMLVLFFLESELHEHAAYLVDSLWESSQELLKDWECMTELLLEEP--VQGEEA 516
Query: 426 LDDRQETSLIELMVCCVRQAATGDAPVGRGPNRRIASMKEMKQVQDDKQRLTEHFIKVLP 485
+ DRQE++LIELMVC +RQAA PVGRG +R+ + KE K DD+ +LTEHFI LP
Sbjct: 517 MSDRQESALIELMVCTIRQAAEAHPPVGRGTGKRVLTAKERKTQIDDRNKLTEHFIITLP 576
Query: 486 QLLDKYVADHDKLTNLLSLPQYFDLNIYTTSRREKDLDELLKKLQKIVDKHNDTEVLETC 545
LL KY AD +K+ NLL +PQYFDL IY+T R EK LD LLK+++ +V+KH +++VLE C
Sbjct: 577 MLLSKYSADAEKVANLLQIPQYFDLEIYSTGRMEKHLDALLKQIKFVVEKHVESDVLEAC 636
Query: 546 AKTLETLCCEENASIFTRCDVQRRTLIEKTIVDKYTESLDDWNNSLEAGVKPDDDETFNL 605
+KT LC EE +I R D+ R LI++ VD++ S++D L+ G + DDD+ +N+
Sbjct: 637 SKTYSILCSEE-YTIQNRVDIARSQLIDE-FVDRFNHSVEDL---LQEGEEADDDDIYNV 691
Query: 606 VSSLKKIATFYSCHNMGQWNVWDTAYKTILEAQSNSPKAPPQEAVQYCMRACYFSLLWDL 665
+S+LK++ +F++ H++ +W+++ Y+ + + A P++ V ++ ++S+LW L
Sbjct: 692 LSTLKRLTSFHNAHDLTKWDLFGNCYRLLKTGIEHG--AMPEQIVVQALQCSHYSILWQL 749
>sp|Q9D3E6|STAG1_MOUSE Cohesin subunit SA-1 OS=Mus musculus GN=Stag1 PE=1 SV=3
Length = 1258
Score = 568 bits (1464), Expect = e-161, Method: Compositional matrix adjust.
Identities = 318/660 (48%), Positives = 420/660 (63%), Gaps = 107/660 (16%)
Query: 102 LVDEWIEQYKSHKESALLSLMQFFINGSGCRGKITSNMANNMEHAAIIRKMTEEFDEESG 161
+VD+WIE YK ++ ALL L+ FFI SGCRG + M NM++A IIRKMTEEFDE+SG
Sbjct: 101 VVDDWIELYKQDRDIALLDLINFFIQCSGCRGTVRIEMFRNMQNAEIIRKMTEEFDEDSG 160
Query: 162 EYPLIMAGQQWKKFRSNFCDFVAHLVKQCQYSIIYDQYLMDNVISLLTGLSDSQVRAFRH 221
+YPL M G QWKKFRSNFC+F+ L++QCQYSIIYD+Y+MD VISLLTGLSDSQVRAFRH
Sbjct: 161 DYPLTMPGPQWKKFRSNFCEFIGVLIRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRH 220
Query: 222 TATLAAMKLMTALVDVALVVSVNLDNTQRQYESERQKTRDKRASDRLESLMTKRQELE-- 279
T+TLAAMKLMTALV+VAL +S++ DNTQRQYE+ER K KRA++RLE L+ KR+EL+
Sbjct: 221 TSTLAAMKLMTALVNVALNLSIHQDNTQRQYEAERNKMIGKRANERLELLLQKRKELQEN 280
Query: 280 ----ENM-----------------DEIKNM---------------------LTYM----- 292
ENM EI+ + L Y+
Sbjct: 281 QDEIENMMNSIFKGIFVHRYRDAIAEIRAICIEEIGVWMKMYSDAFLNDSYLKYVGWTLH 340
Query: 293 -------FKSVFALQPLYASEDLKGKLELFTSKFKDRIVAMTLDKEYDVAVHAVRLVISI 345
K + ALQ LY + +L KLELFT++FKDRIV+MTLDKEYDVAV A+RLV I
Sbjct: 341 DRQGEVRLKCLKALQSLYTNRELFPKLELFTNRFKDRIVSMTLDKEYDVAVEAIRLVTLI 400
Query: 346 L------------------------------------KLFVPDDEFANVHTKGGKRRLKN 369
L KLF D A KRR +N
Sbjct: 401 LHGSEEALSNEDCENVYHLVYSAHRPVAVAAGEFLHKKLFSRHDPQA--EEALAKRRGRN 458
Query: 370 TP---LIRDLVQFFIESELHEHGAYLVDSLIESN-EMMKDWECMTDLLLEEPNPKYNEEP 425
+P LIR LV FF+ESELHEH AYLVDSL ES+ E++KDWECMT+LLLEEP EE
Sbjct: 459 SPNGNLIRMLVLFFLESELHEHAAYLVDSLWESSQELLKDWECMTELLLEEP--VQGEEA 516
Query: 426 LDDRQETSLIELMVCCVRQAATGDAPVGRGPNRRIASMKEMKQVQDDKQRLTEHFIKVLP 485
+ DRQE++LIELMVC +RQAA PVGRG +R+ + KE K DD+ +LTEHFI LP
Sbjct: 517 MSDRQESALIELMVCTIRQAAEAHPPVGRGTGKRVLTAKERKTQIDDRNKLTEHFIITLP 576
Query: 486 QLLDKYVADHDKLTNLLSLPQYFDLNIYTTSRREKDLDELLKKLQKIVDKHNDTEVLETC 545
LL KY AD +K+ NLL +PQYFDL IY+T R EK LD LLK+++ +V+KH +++VLE C
Sbjct: 577 MLLSKYSADAEKVANLLQIPQYFDLEIYSTGRMEKHLDALLKQIKFVVEKHVESDVLEAC 636
Query: 546 AKTLETLCCEENASIFTRCDVQRRTLIEKTIVDKYTESLDDWNNSLEAGVKPDDDETFNL 605
+KT LC EE +I R D+ R LI++ VD++ S++D L+ G + DDD+ +N+
Sbjct: 637 SKTYSILCSEE-YTIQNRVDIARSQLIDE-FVDRFNHSVEDL---LQEGEEADDDDIYNV 691
Query: 606 VSSLKKIATFYSCHNMGQWNVWDTAYKTILEAQSNSPKAPPQEAVQYCMRACYFSLLWDL 665
+S+LK++ +F++ H++ +W+++ Y+ + + A P++ V ++ ++S+LW L
Sbjct: 692 LSTLKRLTSFHNAHDLTKWDLFGNCYRLLKTGIEHG--AMPEQIVVQALQCSHYSILWQL 749
>sp|O35638|STAG2_MOUSE Cohesin subunit SA-2 OS=Mus musculus GN=Stag2 PE=1 SV=3
Length = 1231
Score = 563 bits (1451), Expect = e-159, Method: Compositional matrix adjust.
Identities = 310/662 (46%), Positives = 418/662 (63%), Gaps = 102/662 (15%)
Query: 102 LVDEWIEQYKSHKESALLSLMQFFINGSGCRGKITSNMANNMEHAAIIRKMTEEFDEESG 161
+VD+WIE YK ++ ALL L+ FFI SGC+G +T+ M +M+++ IIRKMTEEFDE+SG
Sbjct: 98 VVDDWIESYKHDRDIALLDLINFFIQCSGCKGVVTAEMFRHMQNSEIIRKMTEEFDEDSG 157
Query: 162 EYPLIMAGQQWKKFRSNFCDFVAHLVKQCQYSIIYDQYLMDNVISLLTGLSDSQVRAFRH 221
+YPL MAG QWKKF+S+FC+F+ LV+QCQYSIIYD+Y+MD VISLLTGLSDSQVRAFRH
Sbjct: 158 DYPLTMAGPQWKKFKSSFCEFIGVLVRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRH 217
Query: 222 TATLAAMKLMTALVDVALVVSVNLDNTQRQYESERQKTRDKRASDRLESLMTKRQELE-- 279
T+TLAAMKLMTALV+VAL +S+N+DNTQRQYE+ER K KRA++RLE L+ KR+EL+
Sbjct: 218 TSTLAAMKLMTALVNVALNLSINMDNTQRQYEAERNKMIGKRANERLELLLQKRKELQEN 277
Query: 280 ----ENM-----------------DEIKNM---------------------LTYM----- 292
ENM EI+ + L Y+
Sbjct: 278 QDEIENMMNAIFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMH 337
Query: 293 -------FKSVFALQPLYASEDLKGKLELFTSKFKDRIVAMTLDKEYDVAVHAVRLVISI 345
K + ALQ LY +++L KLELFTS+FKDRIV+MTLDKEYDVAV A++L+ +
Sbjct: 338 DKQGEVRLKCLTALQGLYYNKELNSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLV 397
Query: 346 L------------------------------------KLFVPDDEFANVHTKGGKRRLKN 369
L KLF D + K R+ N
Sbjct: 398 LQSSEEVLTAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSRRDPEEDGLMKRRGRQGPN 457
Query: 370 TPLIRDLVQFFIESELHEHGAYLVDSLIE-SNEMMKDWECMTDLLLEEPNPKYNEEPLDD 428
L++ LV FF+ESELHEH AYLVDS+ + + E++KDWECM LLLEEP EE L D
Sbjct: 458 ANLVKTLVFFFLESELHEHAAYLVDSMWDCATELLKDWECMNSLLLEEPLS--GEEALTD 515
Query: 429 RQETSLIELMVCCVRQAATGDAPVGRGPNRRIASMKEMKQVQDDKQRLTEHFIKVLPQLL 488
RQE++LIE+M+C +RQAA PVGRG +R+ + KE K DD+ R+TE F LPQLL
Sbjct: 516 RQESALIEIMLCTIRQAAECHPPVGRGTGKRVLTAKEKKTQLDDRTRITELFAVALPQLL 575
Query: 489 DKYVADHDKLTNLLSLPQYFDLNIYTTSRREKDLDELLKKLQKIVDKHNDTEVLETCAKT 548
KY D +K+TNLL LPQYFDL IYTT R EK LD LL++++ IV+KH DT+VLE C+KT
Sbjct: 576 AKYSVDAEKVTNLLQLPQYFDLEIYTTGRLEKHLDALLRQIRNIVEKHTDTDVLEACSKT 635
Query: 549 LETLCCEENASIFTRCDVQRRTLIEKTIVDKYTESLDDWNNSLEAGVKPDDDETFNLVSS 608
LC EE +IF R D+ R LI++ + DK+ L+D+ L+ G +PD+D+ + ++S+
Sbjct: 636 YHALCNEE-FTIFNRVDISRSQLIDE-LADKFNRLLEDF---LQEGEEPDEDDAYQVLST 690
Query: 609 LKKIATFYSCHNMGQWNVWDTAYKTILEAQSNSPKAPPQEAVQYCMRACYFSLLWDLHHC 668
LK+I F++ H++ +W+++ YK + N P++ V + ++ ++ +LW L
Sbjct: 691 LKRITAFHNAHDLSKWDLFACNYKLLKTGIENGDM--PEQIVIHALQCAHYVILWQLAKI 748
Query: 669 EE 670
E
Sbjct: 749 TE 750
>sp|Q8N3U4|STAG2_HUMAN Cohesin subunit SA-2 OS=Homo sapiens GN=STAG2 PE=1 SV=3
Length = 1231
Score = 562 bits (1448), Expect = e-159, Method: Compositional matrix adjust.
Identities = 309/662 (46%), Positives = 418/662 (63%), Gaps = 102/662 (15%)
Query: 102 LVDEWIEQYKSHKESALLSLMQFFINGSGCRGKITSNMANNMEHAAIIRKMTEEFDEESG 161
+VD+WIE YK ++ ALL L+ FFI SGC+G +T+ M +M+++ IIRKMTEEFDE+SG
Sbjct: 98 VVDDWIESYKHDRDIALLDLINFFIQCSGCKGVVTAEMFRHMQNSEIIRKMTEEFDEDSG 157
Query: 162 EYPLIMAGQQWKKFRSNFCDFVAHLVKQCQYSIIYDQYLMDNVISLLTGLSDSQVRAFRH 221
+YPL MAG QWKKF+S+FC+F+ LV+QCQYSIIYD+Y+MD VISLLTGLSDSQVRAFRH
Sbjct: 158 DYPLTMAGPQWKKFKSSFCEFIGVLVRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRH 217
Query: 222 TATLAAMKLMTALVDVALVVSVNLDNTQRQYESERQKTRDKRASDRLESLMTKRQELE-- 279
T+TLAAMKLMTALV+VAL +S+N+DNTQRQYE+ER K KRA++RLE L+ KR+EL+
Sbjct: 218 TSTLAAMKLMTALVNVALNLSINMDNTQRQYEAERNKMIGKRANERLELLLQKRKELQEN 277
Query: 280 ----ENM-----------------DEIKNM---------------------LTYM----- 292
ENM EI+ + L Y+
Sbjct: 278 QDEIENMMNAIFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMH 337
Query: 293 -------FKSVFALQPLYASEDLKGKLELFTSKFKDRIVAMTLDKEYDVAVHAVRLVISI 345
K + ALQ LY +++L KLELFTS+FKDRIV+MTLDKEYDVAV A++L+ +
Sbjct: 338 DKQGEVRLKCLTALQGLYYNKELNSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLV 397
Query: 346 L------------------------------------KLFVPDDEFANVHTKGGKRRLKN 369
L KLF D + K R+ N
Sbjct: 398 LQSSEEVLTAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSRRDPEEDGMMKRRGRQGPN 457
Query: 370 TPLIRDLVQFFIESELHEHGAYLVDSLIE-SNEMMKDWECMTDLLLEEPNPKYNEEPLDD 428
L++ LV FF+ESELHEH AYLVDS+ + + E++KDWECM LLLEEP EE L D
Sbjct: 458 ANLVKTLVFFFLESELHEHAAYLVDSMWDCATELLKDWECMNSLLLEEPLS--GEEALTD 515
Query: 429 RQETSLIELMVCCVRQAATGDAPVGRGPNRRIASMKEMKQVQDDKQRLTEHFIKVLPQLL 488
RQE++LIE+M+C +RQAA PVGRG +R+ + KE K DD+ ++TE F LPQLL
Sbjct: 516 RQESALIEIMLCTIRQAAECHPPVGRGTGKRVLTAKEKKTQLDDRTKITELFAVALPQLL 575
Query: 489 DKYVADHDKLTNLLSLPQYFDLNIYTTSRREKDLDELLKKLQKIVDKHNDTEVLETCAKT 548
KY D +K+TNLL LPQYFDL IYTT R EK LD LL++++ IV+KH DT+VLE C+KT
Sbjct: 576 AKYSVDAEKVTNLLQLPQYFDLEIYTTGRLEKHLDALLRQIRNIVEKHTDTDVLEACSKT 635
Query: 549 LETLCCEENASIFTRCDVQRRTLIEKTIVDKYTESLDDWNNSLEAGVKPDDDETFNLVSS 608
LC EE +IF R D+ R LI++ + DK+ L+D+ L+ G +PD+D+ + ++S+
Sbjct: 636 YHALCNEE-FTIFNRVDISRSQLIDE-LADKFNRLLEDF---LQEGEEPDEDDAYQVLST 690
Query: 609 LKKIATFYSCHNMGQWNVWDTAYKTILEAQSNSPKAPPQEAVQYCMRACYFSLLWDLHHC 668
LK+I F++ H++ +W+++ YK + N P++ V + ++ ++ +LW L
Sbjct: 691 LKRITAFHNAHDLSKWDLFACNYKLLKTGIENGDM--PEQIVIHALQCTHYVILWQLAKI 748
Query: 669 EE 670
E
Sbjct: 749 TE 750
>sp|Q9DGN0|STAG2_XENLA Cohesin subunit SA-2 OS=Xenopus laevis GN=stag2 PE=1 SV=1
Length = 1194
Score = 537 bits (1383), Expect = e-151, Method: Compositional matrix adjust.
Identities = 301/666 (45%), Positives = 409/666 (61%), Gaps = 102/666 (15%)
Query: 102 LVDEWIEQYKSHKESALLSLMQFFINGSGCRGKITSNMANNMEHAAIIRKMTEEFDEESG 161
+VD+WIE YK K+ ALL L+ FFI SGC+G ++ M +M+++ IIR+MTEEFDE+SG
Sbjct: 29 VVDDWIEAYKHSKDVALLDLINFFIQCSGCKGVVSGEMFRHMQNSEIIRRMTEEFDEDSG 88
Query: 162 EYPLIMAGQQWKKFRSNFCDFVAHLVKQCQYSIIYDQYLMDNVISLLTGLSDSQVRAFRH 221
+YPL MAG QWKKF+ +FC+F+ LV+QCQYSIIYD+Y+MD VISLLTGLSDSQVRAFRH
Sbjct: 89 DYPLTMAGPQWKKFKFSFCEFIGVLVRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRH 148
Query: 222 TATLAAMKLMTALVDVALVVSVNLDNTQRQYESERQKTRDKRASDRLESLMTKRQELEEN 281
T+TLAAMKLMTALV+VAL +S+N+DNTQRQYE+ER K KRA+DRLE L+ KR+EL+EN
Sbjct: 149 TSTLAAMKLMTALVNVALNLSINMDNTQRQYEAERNKMIGKRANDRLELLLQKRKELQEN 208
Query: 282 MDEIKNMLTYMFKSVFA------------------------------------------- 298
DEI+NM+ +FK VF
Sbjct: 209 QDEIENMMNAIFKGVFVHRYRDAIAEIRAICIEEIGVWMKMYSDAFLNDSYLKYVGWTMH 268
Query: 299 -------LQPLYASEDLKGKLELFT------SKFKDRIVAMTLDKEYDVAVHAVRLVISI 345
L+ L A + L EL T S+FKDRIV+MTLDKEYDVAV A++L+ +
Sbjct: 269 DKQGEVRLKCLTALQGLYYNRELNTKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLV 328
Query: 346 L------------------------------------KLFVPDDEFANVHTKGGKRRLKN 369
L KLF D + K R N
Sbjct: 329 LQSSDEVLTAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSCRDPEEDGIMKRRGRLSPN 388
Query: 370 TPLIRDLVQFFIESELHEHGAYLVDSLIE-SNEMMKDWECMTDLLLEEPNPKYNEEPLDD 428
L++ LV FF+ESELHEH AYLVDS+ + + E++KDW+CM LLL+ +P EE L D
Sbjct: 389 ANLVKTLVFFFLESELHEHAAYLVDSMWDCATELLKDWDCMNSLLLD--DPLNGEEALTD 446
Query: 429 RQETSLIELMVCCVRQAATGDAPVGRGPNRRIASMKEMKQVQDDKQRLTEHFIKVLPQLL 488
RQE++LIE+++C VRQAA PVGRG +R+ + KE K DDK LTE F LPQLL
Sbjct: 447 RQESALIEILLCTVRQAAECHPPVGRGTGKRVLTAKEKKSQMDDKTHLTELFAVSLPQLL 506
Query: 489 DKYVADHDKLTNLLSLPQYFDLNIYTTSRREKDLDELLKKLQKIVDKHNDTEVLETCAKT 548
KY D +K+TNLL LPQYFDL IYTT R EK L+ LL++++ IV+KH DT+VLE C+KT
Sbjct: 507 AKYSVDAEKVTNLLQLPQYFDLEIYTTGRLEKHLEALLRQIRNIVEKHTDTDVLEACSKT 566
Query: 549 LETLCCEENASIFTRCDVQRRTLIEKTIVDKYTESLDDWNNSLEAGVKPDDDETFNLVSS 608
LC EE +I+ R D+ + LI++ + DK+ L+D+ L+ + D+D+ + ++S+
Sbjct: 567 YHALCNEE-FTIYNRVDIAKSQLIDE-LADKFNRLLEDF---LQEEEELDEDDAYQVLST 621
Query: 609 LKKIATFYSCHNMGQWNVWDTAYKTILEAQSNSPKAPPQEAVQYCMRACYFSLLWDLHHC 668
LK+I F++ H++ +W+++ YK + N P++ V + ++ ++ +LW L
Sbjct: 622 LKRITAFHNAHDLSRWDLFSGNYKLLKTGIENGDM--PEQIVVHALQCTHYVILWQLAKF 679
Query: 669 EELAQS 674
E S
Sbjct: 680 SETGSS 685
>sp|Q9DGN1|STAG1_XENLA Cohesin subunit SA-1 OS=Xenopus laevis GN=stag1 PE=1 SV=1
Length = 1265
Score = 533 bits (1374), Expect = e-150, Method: Compositional matrix adjust.
Identities = 303/660 (45%), Positives = 412/660 (62%), Gaps = 107/660 (16%)
Query: 102 LVDEWIEQYKSHKESALLSLMQFFINGSGCRGKITSNMANNMEHAAIIRKMTEEFDEESG 161
+VD+WIE YK ++ ALL L+ FFI SGC+G + M NM++A IIRKMTEEFDE+SG
Sbjct: 108 VVDDWIESYKQDRDIALLDLINFFIQCSGCKGTVRIEMFRNMQNAEIIRKMTEEFDEDSG 167
Query: 162 EYPLIMAGQQWKKFRSNFCDFVAHLVKQCQYSIIYDQYLMDNVISLLTGLSDSQVRAFRH 221
+YPL M G WKKFR NFC+F++ L++QCQYSIIYD+Y+MD VISLLTGLSDSQVRAFRH
Sbjct: 168 DYPLTMPGPHWKKFRCNFCEFISVLIRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRH 227
Query: 222 TATLAAMKLMTALVDVALVVSVNLDNTQRQYESERQKTRDKRASDRLESLMTKRQELEEN 281
T+TLAAMKLMTALV+VAL +S++ DNTQRQYE+ER K +KRA++RLE L+ KR+EL+EN
Sbjct: 228 TSTLAAMKLMTALVNVALNLSIHQDNTQRQYETERNKIINKRANERLELLLQKRKELQEN 287
Query: 282 MDEIKNMLTYMFKSVFA------------------------------------------- 298
DEI+NM+ +FK +F
Sbjct: 288 QDEIENMMNSIFKGIFVHRYRDAIAEIRAICIEEIGVWMKMYSDAFLNDSYLKYVGWTLH 347
Query: 299 -------LQPLYASEDLKGKLEL------FTSKFKDRIVAMTLDKEYDVAVHAVRLVISI 345
L+ L A + L EL FT++FKDRIV+MTLDKEYDVAV A+RLV I
Sbjct: 348 DRQGEVRLKCLKALQSLYTNRELFPKLELFTNRFKDRIVSMTLDKEYDVAVEAIRLVTLI 407
Query: 346 L------------------------------------KLFVPDDEFANVHTKGGKRRLKN 369
L KLF D A KRR ++
Sbjct: 408 LHGSEEALSNEDCENVYHLVYSAHRPVAVAAGEFLHKKLFSRHDPQA--EEALAKRRGRS 465
Query: 370 TP---LIRDLVQFFIESELHEHGAYLVDSLIESN-EMMKDWECMTDLLLEEPNPKYNEEP 425
+P L++ LV FF+ESELHEH AYLVDSL ES+ E++KDWECMT+LL+EE P EE
Sbjct: 466 SPNGNLVKMLVLFFLESELHEHAAYLVDSLWESSQELLKDWECMTELLVEE--PMQGEEV 523
Query: 426 LDDRQETSLIELMVCCVRQAATGDAPVGRGPNRRIASMKEMKQVQDDKQRLTEHFIKVLP 485
+ +RQE++L+ELMVC +RQAA PVGRG +R+ + KE K DDK +LTEHFI LP
Sbjct: 524 MSERQESALVELMVCTIRQAAEAHPPVGRGTGKRVLTAKERKTQLDDKTKLTEHFIVALP 583
Query: 486 QLLDKYVADHDKLTNLLSLPQYFDLNIYTTSRREKDLDELLKKLQKIVDKHNDTEVLETC 545
LL KY AD +K+ NLL +PQYFDL +Y+T R EK LD LLK+++ +V+KH +++VLE C
Sbjct: 584 VLLSKYSADAEKVANLLQIPQYFDLELYSTGRMEKHLDSLLKQIRFVVEKHIESDVLEAC 643
Query: 546 AKTLETLCCEENASIFTRCDVQRRTLIEKTIVDKYTESLDDWNNSLEAGVKPDDDETFNL 605
+KT LC EE +I R ++ LI++ + D+++ ++ L+ + D+DE +N+
Sbjct: 644 SKTYSILCSEE-YTIQNRVEIAHSQLIDE-LADRFSHAV---EELLQEAEEADEDEIYNV 698
Query: 606 VSSLKKIATFYSCHNMGQWNVWDTAYKTILEAQSNSPKAPPQEAVQYCMRACYFSLLWDL 665
++SLK++ F++ H++ +W+ + Y+ +L A Q VQ ++ ++S+LW L
Sbjct: 699 MASLKRLTCFHNAHDLTKWDFFGNCYR-LLRAGIEHEGMMEQIVVQ-ALQCSHYSILWQL 756
>sp|Q9UJ98|STAG3_HUMAN Cohesin subunit SA-3 OS=Homo sapiens GN=STAG3 PE=1 SV=2
Length = 1225
Score = 459 bits (1182), Expect = e-128, Method: Compositional matrix adjust.
Identities = 269/663 (40%), Positives = 383/663 (57%), Gaps = 114/663 (17%)
Query: 102 LVDEWIEQYKSHKESALLSLMQFFINGSGCRGKITSNMANNMEHAAIIRKMTEEFDEESG 161
LVDEW++ YK +++ L L+ FFI GC+G +T M M ++ II+ +TE+F+E+SG
Sbjct: 114 LVDEWLDSYKQDQDAGFLELVNFFIQSCGCKGIVTPEMFKKMSNSEIIQHLTEQFNEDSG 173
Query: 162 EYPLIMAGQQWKKFRSNFCDFVAHLVKQCQYSIIYDQYLMDNVISLLTGLSDSQVRAFRH 221
+YPLI G WKKF+ +FC+FV LV QCQYS++YD + MD++ISLLTGLSDSQVRAFRH
Sbjct: 174 DYPLIAPGPSWKKFQGSFCEFVRTLVCQCQYSLLYDGFPMDDLISLLTGLSDSQVRAFRH 233
Query: 222 TATLAAMKLMTALVDVALVVSVNLDNTQRQYESERQKTRDKRASDRLESLMTKRQELEEN 281
T+TLAAMKLMT+LV VAL +SV+ DN QRQYE+ER K +RA +RLESL+ KR+EL+E+
Sbjct: 234 TSTLAAMKLMTSLVKVALQLSVHQDNNQRQYEAERNKGPGQRAPERLESLLEKRKELQEH 293
Query: 282 -----------------------MDEIKNM---------------------LTYM----- 292
+ EI+ + L Y+
Sbjct: 294 QEEIEGMMNALFRGVFVHRYRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGWTLH 353
Query: 293 -------FKSVFALQPLYASEDLKGKLELFTSKFKDRIVAMTLDKEYDVAVHAVRLVISI 345
K V AL+ LY + DL +LELFTS+FKDR+V+M +D+EYDVAV AVRL+I I
Sbjct: 354 DKHREVRLKCVKALKGLYGNRDLTTRLELFTSRFKDRMVSMVMDREYDVAVEAVRLLILI 413
Query: 346 LK------------------------------------LFVPDDEFANVHTKGGKRRLKN 369
LK LF P+ E + GG+ + ++
Sbjct: 414 LKNMEGVLTDADCESVYPVVYASHRGLASAAGEFLYWKLFYPECE---IRMMGGREQRQS 470
Query: 370 TPLIRDLVQ----FFIESELHEHGAYLVDSLIE-SNEMMKDWECMTDLLLEEPNPKYNEE 424
R Q FF+ESELH+H AYLVDSL + + +KDWE +T LLLE+ ++
Sbjct: 471 PGAQRTFFQLLLSFFVESELHDHAAYLVDSLWDCAGARLKDWEGLTSLLLEK------DQ 524
Query: 425 PLDDRQETSLIELMVCCVRQAATGDAPVGRGPNRRIASMKEMKQVQDDKQRLTEHFIKVL 484
L D QE++LIE++V RQA+ G PVGR R+ + KE K DD+ +LTEH I +L
Sbjct: 525 NLGDVQESTLIEILVSSARQASEGHPPVGRVTGRKGLTSKERKTQADDRVKLTEHLIPLL 584
Query: 485 PQLLDKYVADHDKLTNLLSLPQYFDLNIYTTSRREKDLDELLKKLQKIVDKHNDTEVLET 544
PQLL K+ AD +K+T LL L FDL+IY T R EK L+ L++LQ++V KH + VLE
Sbjct: 585 PQLLAKFSADAEKVTPLLQLLSCFDLHIYCTGRLEKHLELFLQQLQEVVVKHAEPAVLEA 644
Query: 545 CAKTLETLCCEENASIFTRCDVQRRTLIEKTIVDKYTESLDDWNNSLEAGVKPDDDETFN 604
A L LC E + F+R D R L++ + D++ + L++ S D+DE +N
Sbjct: 645 GAHALYLLCNPE-FTFFSRADFARSQLVD-LLTDRFQQELEELLQSSFL----DEDEVYN 698
Query: 605 LVSSLKKIATFYSCHNMGQWNVWDTAYKTILEAQSNSPKAPPQEAVQYCMRACYFSLLWD 664
L ++LK+++ FY+ H++ +W +++ + + +A P + + + YFS+LW
Sbjct: 699 LAATLKRLSAFYNTHDLTRWELYEPCCQLLQKAVDTG--EVPHQVILPALTLVYFSILWT 756
Query: 665 LHH 667
L H
Sbjct: 757 LTH 759
>sp|Q99M76|STAG3_RAT Cohesin subunit SA-3 OS=Rattus norvegicus GN=Stag3 PE=2 SV=1
Length = 1256
Score = 419 bits (1078), Expect = e-116, Method: Compositional matrix adjust.
Identities = 258/663 (38%), Positives = 376/663 (56%), Gaps = 108/663 (16%)
Query: 102 LVDEWIEQYKSHKESALLSLMQFFINGSGCRGKITSNMANNMEHAAIIRKMTEEFDEESG 161
LVDEW+E YK + + L L+ FFI GC+ +T M M ++ II+ +TEEF+E+SG
Sbjct: 129 LVDEWLENYKQDENAGFLELVNFFIRACGCKSTVTPEMFKTMSNSEIIQHLTEEFNEDSG 188
Query: 162 EYPLIMAGQQWKKFRSNFCDFVAHLVKQCQYSIIYDQYLMDNVISLLTGLSDSQVRAFRH 221
+YPL G WKKF+ +FC+FV LV QCQYS+++D + MD++ISLL GLSDSQVRAFRH
Sbjct: 189 DYPLTAPGPSWKKFQGSFCEFVKTLVCQCQYSLLFDGFPMDDLISLLIGLSDSQVRAFRH 248
Query: 222 TATLAAMKLMTALVDVALVVSVNLDNTQRQYESERQKTRDKRASDRLESLMTKRQELEEN 281
T+TLAAMKLMT+LV VAL +S++ DN QRQYE+ER K ++RA +RLESL+ KR+E +EN
Sbjct: 249 TSTLAAMKLMTSLVKVALQLSLHKDNNQRQYEAERNKGPEQRAPERLESLLEKRKEFQEN 308
Query: 282 -----------------------MDEIKNM---------------------LTYM----- 292
+ EI+ + L Y+
Sbjct: 309 QEEIEGMMNAIFRGVFVHRYRDILPEIRAVCIEEIGCWMQSYSTSFLNDSYLKYIGWTLH 368
Query: 293 -------FKSVFALQPLYASEDLKGKLELFTSKFKDRIVAMTLDKEYDVAVHAVRLVISI 345
K V AL LY++++L ++ELFT++FKDR+V+M +D+E +VAV A+RL+ I
Sbjct: 369 DKHKEVRLKCVKALAGLYSNQELSSRMELFTNRFKDRMVSMVMDRESEVAVEAIRLLTLI 428
Query: 346 LK-----------------LFVPDDEFAN----------VHTKGGK-----RRLKNTP-- 371
LK +++ + A+ H + G R + +P
Sbjct: 429 LKNMEGVLTSADCEKIYSIVYISNRAMASSAGEFVYWKIFHPECGAKAVSGRERRRSPQA 488
Query: 372 ---LIRDLVQFFIESELHEHGAYLVDSLIE-SNEMMKDWECMTDLLLEEPNPKYNEEPLD 427
I L+ FF+ESE H+H AYLVDSL + + +KDWE +T LLL++ ++ L
Sbjct: 489 QRTFIYLLLAFFMESEHHDHAAYLVDSLWDCAGSYLKDWESLTSLLLQK------DQNLG 542
Query: 428 DRQETSLIELMVCCVRQAATGDAPVGRGPNRRIASMKEMKQVQDDKQRLTEHFIKVLPQL 487
D QE LIE++V RQAA G PVGR ++ + KE K DK +L EH I +LPQL
Sbjct: 543 DMQERMLIEILVSSARQAAEGHPPVGRITGKKSLTAKERKLQAYDKVKLAEHLIPLLPQL 602
Query: 488 LDKYVADHDKLTNLLSLPQYFDLNIYTTSRREKDLDELLKKLQKIVDKHNDTEVLETCAK 547
L K+ AD + + LL L YFDLNIY T R EK L+ LL++LQ++V KH + EVLE A
Sbjct: 603 LAKFSADAENVAPLLRLLSYFDLNIYCTQRLEKHLELLLQQLQEVVVKHVEPEVLEAAAH 662
Query: 548 TLETLCCEENASIFTRCDVQRRTLIEKTIVDKYTESLDDWNNSLEAGVKPDDDETFNLVS 607
L LC E + F+R D R L++ + D++ + LDD S D+DE ++L +
Sbjct: 663 ALYLLCKPE-FTFFSRVDFARSQLVD-LLTDRFQQELDDLMQSSFL----DEDEVYSLTA 716
Query: 608 SLKKIATFYSCHNMGQWNVWDTAYKTILEAQSNSPKAPPQEAVQYCMRACYFSLLWDLHH 667
+LK+++ FY+ H++ +W + + + + +A P + + + YFS+LW + H
Sbjct: 717 TLKRLSAFYNAHDLTRWEISEPCSRLLRKAVDTG--EVPHQVILPALTLVYFSILWTVTH 774
Query: 668 CEE 670
E
Sbjct: 775 ISE 777
>sp|O70576|STAG3_MOUSE Cohesin subunit SA-3 OS=Mus musculus GN=Stag3 PE=1 SV=2
Length = 1240
Score = 418 bits (1074), Expect = e-115, Method: Compositional matrix adjust.
Identities = 260/688 (37%), Positives = 386/688 (56%), Gaps = 109/688 (15%)
Query: 77 QKKTIAATHYQVDLTSTPYQVRLIMLVDEWIEQYKSHKESALLSLMQFFINGSGCRGKIT 136
+ +++ +T+Y D + LVDEW++ YK + + L L+ FFI GC+ +T
Sbjct: 105 KNESVPSTNYLFDAVKAARSC-MQSLVDEWLDNYKQDENAGFLELINFFIRACGCKSTVT 163
Query: 137 SNMANNMEHAAIIRKMTEEFDEESGEYPLIMAGQQWKKFRSNFCDFVAHLVKQCQYSIIY 196
M M ++ II+ +TEEF+E+SG+YPL G WKKF+ +FC+FV LV QCQYS++Y
Sbjct: 164 PEMFKTMSNSEIIQHLTEEFNEDSGDYPLTAPGPSWKKFQGSFCEFVKTLVYQCQYSLLY 223
Query: 197 DQYLMDNVISLLTGLSDSQVRAFRHTATLAAMKLMTALVDVALVVSVNLDNTQRQYESER 256
D + MD++ISLL GLSDSQVRAFRHT+TLAAMKLMT+LV VAL +S++ DN QRQYE+ER
Sbjct: 224 DGFPMDDLISLLIGLSDSQVRAFRHTSTLAAMKLMTSLVKVALQLSLHKDNNQRQYEAER 283
Query: 257 QKTRDKRASDRLESLMTKRQELEEN-----------------------MDEIKNM----- 288
K ++RA +RLESL+ KR+E +EN + EI+ +
Sbjct: 284 NKGPEQRAPERLESLLEKRKEFQENQEDIEGMMNAIFRGVFVHRYRDILPEIRAICIEEI 343
Query: 289 ----------------LTYM------------FKSVFALQPLYASEDLKGKLELFTSKFK 320
L Y+ K V AL LY++++L ++ELFT++FK
Sbjct: 344 GYWMQSYSTSFLNDSYLKYIGWTLHDKHKEVRLKCVKALAGLYSNQELSLRMELFTNRFK 403
Query: 321 DRIVAMTLDKEYDVAVHAVRLVISILK-----------------LFVPDDEFAN------ 357
DR+V+M +D+E +VAV A+RL+ ILK +++ + A+
Sbjct: 404 DRMVSMVMDRECEVAVEAIRLLTLILKNMEGVLTSADCEKIYSIVYISNRAMASSAGEFV 463
Query: 358 ----VHTKGGK-----RRLKNTP-----LIRDLVQFFIESELHEHGAYLVDSLIE-SNEM 402
H + G R + +P I L+ FF+ESE H H AYLVDSL + +
Sbjct: 464 YWKIFHPECGAKAVSDRERRRSPQAQKTFIYLLLAFFMESEHHNHAAYLVDSLWDCAGSY 523
Query: 403 MKDWECMTDLLLEEPNPKYNEEPLDDRQETSLIELMVCCVRQAATGDAPVGRGPNRRIAS 462
+KDWE +T+LLL++ ++ L D QE LIE++V RQAA G PVGR ++ +
Sbjct: 524 LKDWESLTNLLLQK------DQNLGDMQERMLIEILVSSARQAAEGHPPVGRITGKKSLT 577
Query: 463 MKEMKQVQDDKQRLTEHFIKVLPQLLDKYVADHDKLTNLLSLPQYFDLNIYTTSRREKDL 522
KE K DK +L EH I +LPQLL K+ AD + + LL L YFDL+IY T R EK L
Sbjct: 578 AKERKLQAYDKMKLAEHLIPLLPQLLAKFSADAENVAPLLQLLSYFDLSIYCTQRLEKHL 637
Query: 523 DELLKKLQKIVDKHNDTEVLETCAKTLETLCCEENASIFTRCDVQRRTLIEKTIVDKYTE 582
+ LL++LQ++V KH + EVLE A L LC E + F+R D R L++ + D++ +
Sbjct: 638 ELLLQQLQEVVVKHVEPEVLEAAAHALYLLCKPE-FTFFSRVDFARSQLVD-FLTDRFQQ 695
Query: 583 SLDDWNNSLEAGVKPDDDETFNLVSSLKKIATFYSCHNMGQWNVWDTAYKTILEAQSNSP 642
LDD S D+DE ++L ++LK+++ FY+ H++ +W + + + + +A
Sbjct: 696 ELDDLMQSSFL----DEDEVYSLTATLKRLSAFYNAHDLTRWEISEPCSRLLRKAVDTG- 750
Query: 643 KAPPQEAVQYCMRACYFSLLWDLHHCEE 670
P + + + YFS+LW + H E
Sbjct: 751 -EVPHQVILPALTLVYFSILWTVTHISE 777
>sp|Q8TBR4|STG34_HUMAN STAG3-like protein 4 OS=Homo sapiens GN=STAG3L4 PE=2 SV=1
Length = 150
Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/121 (59%), Positives = 94/121 (77%)
Query: 158 EESGEYPLIMAGQQWKKFRSNFCDFVAHLVKQCQYSIIYDQYLMDNVISLLTGLSDSQVR 217
++SG+YPL G WKKF+ +FC+FV LV +CQY +++D + MDN+ISLLTG SDSQV
Sbjct: 29 KDSGDYPLTAPGLSWKKFQGSFCEFVGTLVCRCQYILLHDDFPMDNLISLLTGFSDSQVC 88
Query: 218 AFRHTATLAAMKLMTALVDVALVVSVNLDNTQRQYESERQKTRDKRASDRLESLMTKRQE 277
AF HT+TLAAMKLMT+LV VAL +S++ D QRQYE+ER K +RA +RLESL+ K +E
Sbjct: 89 AFCHTSTLAAMKLMTSLVRVALQLSLHEDINQRQYEAERNKGPGQRAPERLESLLEKHKE 148
Query: 278 L 278
L
Sbjct: 149 L 149
>sp|P0CL83|ST3L1_HUMAN STAG3-like protein 1 OS=Homo sapiens GN=STAG3L1 PE=2 SV=1
Length = 205
Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/138 (47%), Positives = 92/138 (66%), Gaps = 10/138 (7%)
Query: 294 KSVFALQPLYASEDLKGKLELFTSKFKDRIVAMTLDKEYDVAVHAVRLVISILKLFVPDD 353
K V AL+ LY + DL +LELFT +FKD +V+M +D+EY VAV AVRL+I ILKLF P+
Sbjct: 63 KCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILILKLFYPEC 122
Query: 354 EFANVHTKGGKRRLKNTP-----LIRDLVQFFIESELHEHGAYLVDSLIE-SNEMMKDWE 407
E + T GG+ + + +P + L+ FF+ES+LH+H AYLVD+L + + +KDWE
Sbjct: 123 E---IRTMGGREQ-RQSPGAQRTFFQLLLSFFVESKLHDHAAYLVDNLWDCAGTQLKDWE 178
Query: 408 CMTDLLLEEPNPKYNEEP 425
+T LLLE+ + EP
Sbjct: 179 GLTSLLLEKDQSTCHMEP 196
>sp|P0CL84|ST3L2_HUMAN STAG3-like protein 2 OS=Homo sapiens GN=STAG3L2 PE=2 SV=1
Length = 134
Score = 65.1 bits (157), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/54 (59%), Positives = 41/54 (75%)
Query: 294 KSVFALQPLYASEDLKGKLELFTSKFKDRIVAMTLDKEYDVAVHAVRLVISILK 347
K V AL+ LY + DL +LELFT +FKD +V+M +D+EY VAV AVRL+I ILK
Sbjct: 63 KCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILILK 116
>sp|O13816|SCC3_SCHPO Cohesin subunit psc3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=psc3 PE=1 SV=3
Length = 962
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 88/196 (44%), Gaps = 5/196 (2%)
Query: 106 WIEQYKSHKESALLSLMQFFINGSGCRGKITSNMANNMEHAAIIRKMTEEFDEESG--EY 163
W Y +SAL +L+ F + GC I + + A+ + E + +Y
Sbjct: 105 WFADYAKDNQSALANLINFILKCCGCNRAINVFDVQDQDSASATLSQIQLSVERTSTRDY 164
Query: 164 PLIMAGQQWKKFRSNFCDFVAHLVKQCQY-SIIYDQYLMDNVISLLTGLSDSQVRAFRHT 222
PL +++ FR +++ V Q + +Y+ + ++++S + +S S +R RHT
Sbjct: 165 PLNSKNLKFRNFRKRLTGLLSNFVSQLSIRNYLYNSTVFEDIMSWVVAMSSSTMRPIRHT 224
Query: 223 ATLAAMKLMTALVDVALVVSVNLDNTQRQYESERQKTRDKRASDRLESLMTKRQELEENM 282
AT+ + +MT L + + + +Q E E +++R R +R+ L E+ +
Sbjct: 225 ATVFCLNIMTFLCEKSKELLNEHAIATKQLEKEEKRSRVNR--NRINELNNSLGEIVKQQ 282
Query: 283 DEIKNMLTYMFKSVFA 298
D + L F SVF
Sbjct: 283 DTLTTYLNDYFDSVFV 298
>sp|P0CL85|ST3L3_HUMAN STAG3-like protein 3 OS=Homo sapiens GN=STAG3L3 PE=2 SV=1
Length = 134
Score = 63.5 bits (153), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/54 (59%), Positives = 40/54 (74%)
Query: 294 KSVFALQPLYASEDLKGKLELFTSKFKDRIVAMTLDKEYDVAVHAVRLVISILK 347
K V AL+ LY + DL +LELFT FKD +V+M +D+EY VAV AVRL+I ILK
Sbjct: 63 KCVKALKGLYGNRDLTARLELFTGCFKDWMVSMIMDREYSVAVEAVRLLILILK 116
>sp|P40541|SCC3_YEAST Cohesin subunit SCC3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=IRR1 PE=1 SV=1
Length = 1150
Score = 38.5 bits (88), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 97/221 (43%), Gaps = 25/221 (11%)
Query: 89 DLTSTPYQVRLIMLVDEWIEQYKSHKESALLSLMQFFINGSGCRGKITS-NMANNMEHAA 147
D+ ST V + L+ EW+E Y +++ L + +N G ++ ++ +N
Sbjct: 139 DILSTSEDVSIEELLREWLETYSENRDKFLQEFINLLLNCCGSVARVEDHDVHSNESSNE 198
Query: 148 IIRKMTEEFDEES-GEYPLIMAGQQWKK-------FRSNFCDFVAHLVK-----QCQY-- 192
I ++ F + E+ L+++ + K+ NF +F+ L++ Q Y
Sbjct: 199 TIGEIQLLFQRQKLHEFYLLISKENKKRKNFKMGPLYQNFAEFMTKLLEVANDLQLLYVE 258
Query: 193 ------SIIYDQYLMDNVISLLTGLSDSQVRAFRHTATLAAMKLMTALVDVALVVSVN-L 245
I+ ++D +++ L+ S ++R FR+ +TL L A+ + N L
Sbjct: 259 SDEDDTQIVTGNLVLD-LLTWLSSFSVCKIRCFRYISTLTLYLFQDYLTQQAVNLEKNYL 317
Query: 246 DNTQRQYESERQKTR-DKRASDRLESLMTKRQELEENMDEI 285
+Q E +K R + + ++LES + + Q + +D I
Sbjct: 318 AKLSKQLSLEEKKKRPNNKTLEKLESTIAETQGSKVVIDSI 358
>sp|Q3AZZ0|EX7L_SYNS9 Exodeoxyribonuclease 7 large subunit OS=Synechococcus sp. (strain
CC9902) GN=xseA PE=3 SV=1
Length = 387
Score = 37.4 bits (85), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 251 QYESERQKTRDKRASDRLESLMTKRQELEENMDEIKNMLTYMFKSVFALQPL-YASEDLK 309
+ E +RQ+ D+RA R +S + + Q+L+++++ +++L + S + + L S D
Sbjct: 288 RIERDRQRLNDRRAFLRQQSPLRRLQQLQDDLNRKRDLLRALSPSRWLQRGLALLSNDAG 347
Query: 310 GKLELFTS-KFKDRIVAMTLDKEYDVAVHAVR 340
L TS K DR+V D E D V VR
Sbjct: 348 ETLSGVTSIKVGDRVVIQMNDGELDTDVKVVR 379
>sp|P87128|EIF3J_SCHPO Probable eukaryotic translation initiation factor 3 subunit J
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC3A12.13c PE=1 SV=2
Length = 274
Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 132 RGKITSNMANNMEHAAIIRKMTEEFDEESGEYPLIMAGQQWKKFRSNFCDFVAHL---VK 188
+ +I S++AN M+ I+ K + + A Q+ K ++++ F A + VK
Sbjct: 112 QAEIDSDLANAMDLFDIVDKNSASANRSK------QADQRQLKTKADYAAFQADILKKVK 165
Query: 189 QCQYSIIYDQYLMDNVISLLTGLSDSQVRAFRHT 222
CQ + Y+ ++ D + LLTGL+ + ++A + +
Sbjct: 166 NCQTTAEYNNFVQDLIPLLLTGLNATNLKAVQKS 199
>sp|E3W202|SASY_SANAL Santalene synthase OS=Santalum album PE=1 SV=1
Length = 569
Score = 34.7 bits (78), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 17/144 (11%)
Query: 266 DRLESLMTKRQELEEN----MDEIKNMLTYMFKSVFALQPLYASE--DLKGKL---ELFT 316
D L+SL T +EE +++K + +MF + ++PL E D+ +L LF
Sbjct: 45 DFLQSLATHHNIVEERHLKLAEKLKGQVKFMFGA--PMEPLAKLELVDVVQRLGLNHLFE 102
Query: 317 SKFKDRIVAMTLDKE---YDVAVHAVRLVISILK---LFVPDDEFANVHTKGGKRRLKNT 370
++ K+ + ++ D + +HA L +L+ LF+P D F K G+ +K
Sbjct: 103 TEIKEALFSIYKDGSNGWWFGHLHATSLRFRLLRQCGLFIPQDVFKTFQNKTGEFDMKLC 162
Query: 371 PLIRDLVQFFIESELHEHGAYLVD 394
++ L+ + S L G ++D
Sbjct: 163 DNVKGLLSLYEASYLGWKGENILD 186
>sp|E3W203|SAUSY_SANAS Santalene synthase OS=Santalum austrocaledonicum PE=1 SV=1
Length = 569
Score = 34.3 bits (77), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 68/144 (47%), Gaps = 17/144 (11%)
Query: 266 DRLESLMTKRQELEEN----MDEIKNMLTYMFKSVFALQPLYASE--DLKGKLEL---FT 316
D L+SL T +EE +++K + +MF + ++PL E D+ +L L F
Sbjct: 45 DFLQSLATHHNIVEERHLKLAEKLKGQVKFMFGA--PMEPLAKLELVDVVQRLGLNHRFE 102
Query: 317 SKFKDRIVAMTLDKE---YDVAVHAVRLVISILK---LFVPDDEFANVHTKGGKRRLKNT 370
++ K+ + ++ D+ + +HA L +L+ LF+P D F K G+ +K
Sbjct: 103 TEIKEALFSIYKDESNGWWFGHLHATSLRFRLLRQCGLFIPQDVFKTFQNKTGEFDMKLC 162
Query: 371 PLIRDLVQFFIESELHEHGAYLVD 394
++ L+ + S L G ++D
Sbjct: 163 DNVKGLLSLYEASYLGWKGENILD 186
>sp|Q38XT2|RSGA_LACSS Putative ribosome biogenesis GTPase RsgA OS=Lactobacillus sakei
subsp. sakei (strain 23K) GN=rsgA PE=3 SV=1
Length = 299
Score = 33.5 bits (75), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 361 KGGKRRLKNTPLIRDLVQFFIESELHEHGAYLVDSLIESNEMMK 404
+G R+ K TPL+ D V+F ESE Y+++ L NEM++
Sbjct: 28 RGNFRKRKITPLVGDFVEF--ESESQTESGYILEILDRKNEMIR 69
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 288,332,744
Number of Sequences: 539616
Number of extensions: 12193752
Number of successful extensions: 40873
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 40762
Number of HSP's gapped (non-prelim): 106
length of query: 792
length of database: 191,569,459
effective HSP length: 126
effective length of query: 666
effective length of database: 123,577,843
effective search space: 82302843438
effective search space used: 82302843438
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)