Query psy14013
Match_columns 792
No_of_seqs 190 out of 276
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 17:19:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14013.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14013hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2011|consensus 100.0 2E-106 4E-111 949.8 56.9 607 89-716 78-786 (1048)
2 PF08514 STAG: STAG domain ; 100.0 9.8E-36 2.1E-40 279.3 12.7 118 158-277 1-118 (118)
3 COG5537 IRR1 Cohesin [Cell div 100.0 1.5E-27 3.4E-32 265.4 36.4 412 96-553 94-653 (740)
4 PF05918 API5: Apoptosis inhib 82.4 62 0.0013 38.8 17.7 131 510-662 205-341 (556)
5 KOG1048|consensus 69.9 14 0.00031 44.9 8.2 233 532-788 240-508 (717)
6 PF02985 HEAT: HEAT repeat; I 68.4 8.7 0.00019 27.4 3.8 28 320-347 2-29 (31)
7 PTZ00429 beta-adaptin; Provisi 60.6 4.3E+02 0.0093 33.1 25.9 67 480-554 324-397 (746)
8 PF12830 Nipped-B_C: Sister ch 46.9 23 0.00051 36.1 4.1 33 315-347 5-37 (187)
9 PF12719 Cnd3: Nuclear condens 46.2 4E+02 0.0087 29.0 13.9 132 328-493 75-211 (298)
10 PHA01750 hypothetical protein 44.4 69 0.0015 27.5 5.6 47 226-281 24-71 (75)
11 KOG1059|consensus 38.9 3.7E+02 0.008 33.3 12.6 33 315-347 333-365 (877)
12 PRK11637 AmiB activator; Provi 36.7 2.2E+02 0.0048 32.8 10.4 86 240-328 44-135 (428)
13 PF04799 Fzo_mitofusin: fzo-li 35.7 1.7E+02 0.0036 29.9 7.9 71 221-293 94-164 (171)
14 PF12777 MT: Microtubule-bindi 33.4 2.7E+02 0.0058 31.2 10.2 18 308-325 320-337 (344)
15 KOG2153|consensus 32.4 5.7E+02 0.012 31.3 12.7 50 171-220 276-341 (704)
16 PF12755 Vac14_Fab1_bd: Vacuol 30.5 1.5E+02 0.0032 27.3 6.1 24 322-346 72-95 (97)
17 PF07047 OPA3: Optic atrophy 3 29.9 5.1E+02 0.011 25.1 10.1 79 203-285 48-131 (134)
18 PF12348 CLASP_N: CLASP N term 28.0 3.5E+02 0.0075 27.7 9.3 47 299-347 77-123 (228)
19 PHA03386 P10 fibrous body prot 27.6 2.4E+02 0.0052 26.0 6.7 53 232-290 8-60 (94)
20 PF13513 HEAT_EZ: HEAT-like re 27.2 1.1E+02 0.0023 24.2 4.2 36 310-345 20-55 (55)
21 PF12726 SEN1_N: SEN1 N termin 26.5 5E+02 0.011 32.2 11.7 172 520-704 437-616 (727)
22 PF05531 NPV_P10: Nucleopolyhe 24.7 4.5E+02 0.0098 23.3 7.7 55 236-290 11-66 (75)
23 PF07889 DUF1664: Protein of u 24.1 3.8E+02 0.0082 26.0 7.9 11 267-277 69-79 (126)
24 KOG2211|consensus 24.0 1.5E+03 0.032 28.2 31.9 71 234-304 73-156 (797)
25 PF05402 PqqD: Coenzyme PQQ sy 23.2 1.2E+02 0.0025 25.2 3.8 34 96-129 29-62 (68)
26 cd07596 BAR_SNX The Bin/Amphip 22.5 7.3E+02 0.016 24.9 10.4 30 265-294 144-173 (218)
27 PF01540 Lipoprotein_7: Adhesi 21.9 9.7E+02 0.021 26.3 11.0 142 173-339 163-309 (353)
28 PF05752 Calici_MSP: Calicivir 21.9 6.4E+02 0.014 25.7 9.2 72 225-297 5-83 (167)
29 PF10234 Cluap1: Clusterin-ass 20.6 4.4E+02 0.0094 28.9 8.4 34 263-296 208-241 (267)
30 PF01956 DUF106: Integral memb 20.1 5.4E+02 0.012 25.6 8.6 60 222-281 16-81 (168)
31 PF01452 Rota_NSP4: Rotavirus 20.1 44 0.00095 33.2 0.7 40 117-156 71-110 (173)
No 1
>KOG2011|consensus
Probab=100.00 E-value=1.9e-106 Score=949.80 Aligned_cols=607 Identities=41% Similarity=0.679 Sum_probs=559.8
Q ss_pred cCCCCcc------cccHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcCCCcccCccccCCCchHHHHHHHHHHHhh-ccC
Q psy14013 89 DLTSTPY------QVRLIMLVDEWIEQYKSHKESALLSLMQFFINGSGCRGKITSNMANNMEHAAIIRKMTEEFDE-ESG 161 (792)
Q Consensus 89 ~~~~~Lf------~~~~~~va~eWie~Y~~d~~~Al~eLINfil~~cGc~~~It~~d~~d~d~~~ii~~l~e~f~e-~s~ 161 (792)
...++|| +.+++++|++|++.|++|++.||++||||||+||||+|.||++|++++|+++++..|++.|.+ +++
T Consensus 78 ~~~~eLf~~l~~~k~~i~~lv~~W~e~Yk~n~~~al~~linf~l~~cGck~~Vt~~~v~~~ds~~i~~~~~e~~~e~es~ 157 (1048)
T KOG2011|consen 78 FDPNELFAILLDSKSPIEELVDEWIEDYKENRDKALLELINFFLQCCGCKGRVTDFDVQDVDSSSITLSMTELFDERESG 157 (1048)
T ss_pred cChHHHHHHHHcccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCcccccHHhhccccchHHHHHHHHHHhhhhhc
Confidence 5568899 777999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred ccCcccCCccchhHHhhHHHHHHHHHHHhcc-CcccchhhHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q psy14013 162 EYPLIMAGQQWKKFRSNFCDFVAHLVKQCQY-SIIYDQYLMDNVISLLTGLSDSQVRAFRHTATLAAMKLMTALVDVALV 240 (792)
Q Consensus 162 eYPLi~k~k~~K~Fr~n~~eF~~~LV~~~~~-~iLyD~~Lm~~l~~wLt~lS~S~vR~FRHTATl~aLkl~taLv~va~~ 240 (792)
+||++++||.||+||.+||+|+..||.+|++ ++|||+++|+++++||+|||+|++|+||||||++||++||+||+||.+
T Consensus 158 DYpl~~~g~~~k~fr~~~~~fl~~lV~q~q~~s~l~d~~lmd~~is~LtamSdSqvR~fRhTaTl~~mklmt~Lv~va~~ 237 (1048)
T KOG2011|consen 158 DYPLTSKGPEWKNFRENFCEFLPTLVSQCQYGSCLFDSFLMDDLISWLTAMSDSQVRAFRHTATLAAMKLMTALVSVALN 237 (1048)
T ss_pred cCcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999996 999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhhHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----------------------
Q psy14013 241 VSVNLDNTQRQYESERQKTRDKRASDRLESLMTKRQELEENMDEIKNMLTYMFKSVF----------------------- 297 (792)
Q Consensus 241 l~~~l~~~qrQleaEkkK~~~~r~~~rle~L~~~i~e~~e~~~~i~~~i~~iF~~VF----------------------- 297 (792)
|+.+.++++||||+|++|+++||+ |+++|..++.++|+++++|++||++||++||
T Consensus 238 Ls~~~~~tskQleaEr~k~r~~ra--rle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi 315 (1048)
T KOG2011|consen 238 LSSHNDKTSKQLEAERNKSRGNRA--RLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWI 315 (1048)
T ss_pred HHHhhHHHHHHHHHHhcccccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHH
Confidence 999999999999999999999876 9999999999999999999999999999999
Q ss_pred ---------------------------------hhhhhccCccchhhHhhHHHHHHHHHhhhccCcchhHHHHHHHHHHH
Q psy14013 298 ---------------------------------ALQPLYASEDLKGKLELFTSKFKDRIVAMTLDKEYDVAVHAVRLVIS 344 (792)
Q Consensus 298 ---------------------------------aL~~Ly~~~d~~~~L~~Ft~RFk~RlVeM~~D~D~~V~v~AI~Ll~~ 344 (792)
+|.+||+++++.++|++||+|||+|||||| |+|.+|+|.||+|+..
T Consensus 316 ~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMa-drd~~~~Vrav~L~~~ 394 (1048)
T KOG2011|consen 316 KSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMA-DRDRNVSVRAVGLVLC 394 (1048)
T ss_pred HhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHH
Confidence 999999999999999999999999999999 9999999999999888
Q ss_pred HHh-----------------ccCCCcccc--ccc------------c-----ccCCCCCCCchHHHHHHHHHhhcccccc
Q psy14013 345 ILK-----------------LFVPDDEFA--NVH------------T-----KGGKRRLKNTPLIRDLVQFFIESELHEH 388 (792)
Q Consensus 345 i~~-----------------lf~~~~~~~--~~~------------~-----~~~~~~~~~~~~i~~Ll~f~~ese~he~ 388 (792)
++. +|+.++..+ ++. . ++.....++.+.+..|+.||+++++|+|
T Consensus 395 ~~~~~~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~~~~~a~~e~~~~~~~~~~~~~~~~l~~lv~~fi~~~l~~~ 474 (1048)
T KOG2011|consen 395 LLLSSSGLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKKLFERVANSERVGAEKSLLKAENRELLPLLVSFFEESELHQH 474 (1048)
T ss_pred HHHhcccccChhHHHHHHHHHhccCcchHHHHHHHHHHHhhccccchhhhccccccccccccchHHHHHHHhhhhhhhhh
Confidence 887 444443222 110 0 1111234566789999999999999999
Q ss_pred hhHHHHhhcc-cchhhcchHHHHHHHccCCCCCCCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcc-cccHHHh
Q psy14013 389 GAYLVDSLIE-SNEMMKDWECMTDLLLEEPNPKYNEEPLDDRQETSLIELMVCCVRQAATGDAPVGRGPNRR-IASMKEM 466 (792)
Q Consensus 389 ~~ylVDsLw~-~~~~lkDWe~m~~~LL~D~~~~~~e~~L~~~qe~iLieIL~asVkqa~~g~~p~gR~~~rk-~~s~ke~ 466 (792)
++|+||++|+ ....++||+||..+|+..+.+ +++.+++.+++.|+|+|++++||+++|++|+||+.++| .+|.||.
T Consensus 475 ~~ylv~~l~ds~~~~lkDw~c~~s~ll~~~~~--~~~~l~~~~~s~lie~m~~sirq~ae~e~~v~~~~n~k~~~S~ke~ 552 (1048)
T KOG2011|consen 475 AAYLVDSLFDSLDFLLKDWACMTSLLLDKLLP--QGQELSSADESTLIEIMLNSIRQSAEGEPPVGRHQNSKNNLSAKED 552 (1048)
T ss_pred HHHHHHHHHHhhHHHhcccHHHHHhhcccccc--hhhhccchhhHHHHHHHHHHHHHHhcCCCCccccccccccccHHHH
Confidence 9999999999 899999999999999999876 67789999999999999999999999999999995555 6899999
Q ss_pred hhhhhhHHHHHHHHHHhhHHHHHHhccCHHHHHhhhccccccChhhhcccchhhhHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy14013 467 KQVQDDKQRLTEHFIKVLPQLLDKYVADHDKLTNLLSLPQYFDLNIYTTSRREKDLDELLKKLQKIVDKHNDTEVLETCA 546 (792)
Q Consensus 467 k~~~e~~~~lT~~li~~LP~LL~Ky~ad~e~v~~LL~ip~~~dLe~y~~~r~e~~l~~LL~~I~~~f~~Hsd~~VL~~~a 546 (792)
+...+++.++|.++++.+|+|+.||.+|.+++++|+.||+||+++.|+..|++.+|.+++.++..++.+|.+.+|+++|+
T Consensus 553 ~~~~e~r~~~t~~~~~~lp~Ll~k~~~d~~k~~nl~~i~~~~~l~~y~~~r~~~~l~a~~~~~~~~~~khle~~~l~sc~ 632 (1048)
T KOG2011|consen 553 ADLEEDRPDLTERLIENLPQLLSKYSADEEKSANLHLIPTHFSLEEYSLGRQEEHLRAASQQITDIIEKHLESEVLESCD 632 (1048)
T ss_pred HHHHHhhhhHHHHHHHHhHHHHhhhhhHHHhhhhHHhhhhhhhHHhhhhHhHHHHHHHHHHHHHHHhhhhccHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCChhHHHHHHHHHHHHHHHhccccCCCcch
Q psy14013 547 KTLETLCCEENASIFTRCDVQRRTLIEKTIVDKYTESLDDWNNSLEAGVKPDDDETFNLVSSLKKIATFYSCHNMGQWNV 626 (792)
Q Consensus 547 ~al~~l~~~~~~~i~s~~~~~~~eL~d~~l~~~~~~~l~~~~~l~~~~~~~~ed~~~~l~~~L~RL~~l~s~~dls~w~l 626 (792)
.++.++|.++. +....+...+.++.+ ...+.++..++.+..... ++++.++++++++|+++|++.+++..|++
T Consensus 633 ~~~~~l~~~el-s~~~~~di~r~~~~d-l~~~~~~~il~~f~~~~~-----~~~~~~~~l~~lk~~~~~q~~~~~~~~~l 705 (1048)
T KOG2011|consen 633 KPYEFLCYEEL-SKITDKDIERSNLYD-LFDTKYDKILDIFLLFIR-----DEDDEYAVLSRLKRLASFQNSIDLLKWDL 705 (1048)
T ss_pred chHHHHhhHHH-hhhHHHHHHHhhhhH-hHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999988 788889999999999 999999999999875432 67889999999999999999999999999
Q ss_pred hhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHhcccccchhhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHcccC
Q psy14013 627 WDTAYKTILEAQSNSPKAPPQEAVQYCMRACYFSLLWDLHHCEELAQSGAGTAVEDAVAETKGRLLRFMDSMEEMLKLEH 706 (792)
Q Consensus 627 ~d~~~~iL~~~~~rg~~~l~~E~v~~al~~~~~~l~W~l~~l~~~~~~~~~~~~~~~~~~L~~~~~~f~~~~~~~l~~~~ 706 (792)
|+.++..+..... + ..|..++..+++++++.+.|.+..+.. +..+.++.+..|+++.+.|+..|..+++. .
T Consensus 706 ~~~l~~~l~e~~~-~--d~~~~~~l~~~~~~~~~~~~~~~~i~~-----~~~~~~e~l~~f~~~~~~~~~l~~~~~~~-~ 776 (1048)
T KOG2011|consen 706 FKALAESLHERIN-R--DPQRCIILFKLQLLGNKLTYDLVKIKN-----GEVCGAEFLSELRSRSDSMFNLVDEYLEE-V 776 (1048)
T ss_pred HHHHHHHhhhhhc-c--CchhhHHHHHHHHhhhhhhhhhhhhcc-----CCCccHHHHHHHHHHhHHHHHHHHHHHHh-h
Confidence 9999998887743 3 688899999999999999999998885 15667899999999999999999999987 5
Q ss_pred chhhhhhhhh
Q psy14013 707 CEEYKEEKGH 716 (792)
Q Consensus 707 ~~~v~~k~~v 716 (792)
+.+|+++++.
T Consensus 777 ~~ev~e~~~~ 786 (1048)
T KOG2011|consen 777 NMEVEEQAVR 786 (1048)
T ss_pred hhHHHHHHHH
Confidence 7788888776
No 2
>PF08514 STAG: STAG domain ; InterPro: IPR013721 STAG domain proteins are subunits of cohesin complex - a protein complex required for sister chromatid cohesion in eukaryotes. The STAG domain is present in Schizosaccharomyces pombe (Fission yeast) mitotic cohesin Psc3, and the meiosis specific cohesin Rec11. Many organisms express a meiosis-specific STAG protein, for example, mice and humans have a meiosis specific variant called STAG3, although budding yeast does not have a meiosis specific version [].
Probab=100.00 E-value=9.8e-36 Score=279.30 Aligned_cols=118 Identities=58% Similarity=0.932 Sum_probs=112.8
Q ss_pred hccCccCcccCCccchhHHhhHHHHHHHHHHHhccCcccchhhHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHH
Q psy14013 158 EESGEYPLIMAGQQWKKFRSNFCDFVAHLVKQCQYSIIYDQYLMDNVISLLTGLSDSQVRAFRHTATLAAMKLMTALVDV 237 (792)
Q Consensus 158 e~s~eYPLi~k~k~~K~Fr~n~~eF~~~LV~~~~~~iLyD~~Lm~~l~~wLt~lS~S~vR~FRHTATl~aLkl~taLv~v 237 (792)
|++++|||++++|+||+||.||++||+.||..|++++|||++||+++++||++||+|++||||||||++||+|+|+||++
T Consensus 1 e~~~~YPli~k~~~~k~Fr~~~~~F~~~lv~~~~~~~Lyd~~l~~~l~~wl~~lS~S~~R~fRhTaT~~~l~i~t~L~~v 80 (118)
T PF08514_consen 1 EDSSDYPLISKGKKFKKFRKNFCEFFDQLVEQCHSSILYDDYLMDNLISWLTALSSSKVRPFRHTATLAALKIMTSLCDV 80 (118)
T ss_pred CCcccCCCcCCCcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHhccCCceeehHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhhHHHHHHHHHhhcccchhhhHHHHHHHHHHH
Q psy14013 238 ALVVSVNLDNTQRQYESERQKTRDKRASDRLESLMTKRQE 277 (792)
Q Consensus 238 a~~l~~~l~~~qrQleaEkkK~~~~r~~~rle~L~~~i~e 277 (792)
+.++...+++++||+++|++|++.++ .|++.|+++++|
T Consensus 81 ~~~l~~~~~~~~rQl~aE~~k~~~~~--~r~~~l~~~i~~ 118 (118)
T PF08514_consen 81 AKSLSEELEKTQRQLEAEKKKKRKNK--SRLEELEQKIKE 118 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccH--HHHHHHHHHhcC
Confidence 99999999999999999999988764 499999998865
No 3
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=99.97 E-value=1.5e-27 Score=265.35 Aligned_cols=412 Identities=18% Similarity=0.204 Sum_probs=263.5
Q ss_pred cccHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcCCCcccCccccCCCchH-HHHHHHHHHHhhc-cCccC-cccCCccc
Q psy14013 96 QVRLIMLVDEWIEQYKSHKESALLSLMQFFINGSGCRGKITSNMANNMEHA-AIIRKMTEEFDEE-SGEYP-LIMAGQQW 172 (792)
Q Consensus 96 ~~~~~~va~eWie~Y~~d~~~Al~eLINfil~~cGc~~~It~~d~~d~d~~-~ii~~l~e~f~e~-s~eYP-Li~k~k~~ 172 (792)
+.....++..|.+.|.+|...+|.+||||++.||||...|+..|++|.|++ ++|.++|--+..+ +.+|- ++...-.-
T Consensus 94 Dv~~e~lsvhwfedY~kn~~kfl~~lINf~L~ccGc~~rv~nfDVqd~dS~~eTLgqIqls~~r~k~fe~~lyly~eNfK 173 (740)
T COG5537 94 DVIREILSVHWFEDYMKNLSKFLNSLINFDLSCCGCLTRVGNFDVQDYDSTYETLGQIQLSILRGKGFEVVLYLYDENFK 173 (740)
T ss_pred cccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccccccccccccccccchHHHHHHHHHHHHhcccceeeeeeehhhhH
Confidence 778889999999999999999999999999999999999999999999998 9999999988877 44553 33322111
Q ss_pred hhHHhhHHH-----HHHHHHHHhc-cCcccchhhHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy14013 173 KKFRSNFCD-----FVAHLVKQCQ-YSIIYDQYLMDNVISLLTGLSDSQVRAFRHTATLAAMKLMTALVDVALVVSVNLD 246 (792)
Q Consensus 173 K~Fr~n~~e-----F~~~LV~~~~-~~iLyD~~Lm~~l~~wLt~lS~S~vR~FRHTATl~aLkl~taLv~va~~l~~~l~ 246 (792)
.+||..... |.-..|.+.. ..-||.+.+|.++++|+.+||+|++||||||||++++-+|+-||..|..+
T Consensus 174 ~~~rd~~~~F~~~~llveFvs~~~v~~~i~nss~~ld~~~W~~sms~st~r~~RhtaT~~c~liq~~Lc~qa~~l----- 248 (740)
T COG5537 174 VRFRDVYQDFNIRALLVEFVSEWVVSVGIFNSSCYLDYIGWALSMSNSTVRCFRHTATSCCRLIQKKLCVQAFSL----- 248 (740)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhceeecchHHHHHHHHHHhccCCceeeeehhhHHHHHHHHHHHHHHHHHH-----
Confidence 233333221 2222333322 34688999999999999999999999999999999999999999999843
Q ss_pred hHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----------------------------
Q psy14013 247 NTQRQYESERQKTRDKRASDRLESLMTKRQELEENMDEIKNMLTYMFKSVF----------------------------- 297 (792)
Q Consensus 247 ~~qrQleaEkkK~~~~r~~~rle~L~~~i~e~~e~~~~i~~~i~~iF~~VF----------------------------- 297 (792)
+.||++.+ ..++..+...+ +.+|+++|+++||
T Consensus 249 --------sEKksR~n--e~~l~~ln~sl---------~~d~i~dicdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~y 309 (740)
T COG5537 249 --------SEKKSRMN--ELALYDLNPSL---------IRDEIKDICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDY 309 (740)
T ss_pred --------HHHhhhHH--HHHHHhhcchH---------HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhcchHH
Confidence 33444332 22344333333 8899999999999
Q ss_pred ---------------------------hhhhhccCccchhhHhhHHHHHHHHHhhhc-cCcchhHHHHHHHHHHHHHh--
Q psy14013 298 ---------------------------ALQPLYASEDLKGKLELFTSKFKDRIVAMT-LDKEYDVAVHAVRLVISILK-- 347 (792)
Q Consensus 298 ---------------------------aL~~Ly~~~d~~~~L~~Ft~RFk~RlVeM~-~D~D~~V~v~AI~Ll~~i~~-- 347 (792)
.|..|++...+...+++|.+|||.||+||+ .|+|. ||+.+|++++.++.
T Consensus 310 f~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~lg 388 (740)
T COG5537 310 FRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRILEFLRTDSDC-VRICSIKSLCYLRILG 388 (740)
T ss_pred HHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhccch-hhHHHHHHHHHHHHhc
Confidence 556666655567799999999999999996 89999 99999999998887
Q ss_pred -------------ccCCCcccc----------------ccccccC---------------CCCCCCchH-----HHHHHH
Q psy14013 348 -------------LFVPDDEFA----------------NVHTKGG---------------KRRLKNTPL-----IRDLVQ 378 (792)
Q Consensus 348 -------------lf~~~~~~~----------------~~~~~~~---------------~~~~~~~~~-----i~~Ll~ 378 (792)
+|+..+-.. +.++|.. -..-+...| +..++.
T Consensus 389 ~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~~aevikEKipl~~k~n~lL~a~~qgse~~f~v~~~iFsr~~~llk 468 (740)
T COG5537 389 VLSSSEILIVSSCMLDIIPDSRENIVESVESICKIDAEVIKEKIPLATKTNRLLEAMKQGSERYFVVCEEIFSRFVHLLK 468 (740)
T ss_pred ccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhcchhhhhhhHHHHHHhhhhccchhHHHHHHHHHHHHH
Confidence 566543211 0011110 000111111 223333
Q ss_pred HHh---hccc------------ccchhHHHHhhc---ccchhhcch--HHHHHHHccCCCC--CCCCCCCCh-----HHH
Q psy14013 379 FFI---ESEL------------HEHGAYLVDSLI---ESNEMMKDW--ECMTDLLLEEPNP--KYNEEPLDD-----RQE 431 (792)
Q Consensus 379 f~~---ese~------------he~~~ylVDsLw---~~~~~lkDW--e~m~~~LL~D~~~--~~~e~~L~~-----~qe 431 (792)
++- +.+. .+...-.+.|+- +......-| +.++.++|+|.+. +.....|.. ...
T Consensus 469 ~v~ls~easvy~~t~iR~f~~ng~f~~pii~s~l~~~~i~si~~te~~Ediakl~l~dnsD~eDvn~~el~~t~np~~~~ 548 (740)
T COG5537 469 KVELSFEASVYRITEIRRFFSNGEFTCPIIKSFLISEGIGSIHPTEVKEDIAKLRLMDNSDYEDVNGYELKDTANPAVLC 548 (740)
T ss_pred HHHHhhhhhhhHHHHHHHHHhcCceechhHHHHHHHhhcccccchhHHHHHHHHHhhccCccccccccccccccchHhhh
Confidence 221 1110 011122233322 244556788 8899999998744 001111111 111
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCcccccHHHhhhhhhhHHHHHHHHHHhhHHHHHHhc----cCHHHHHhhhccccc
Q psy14013 432 TSLIELMVCCVRQAATGDAPVGRGPNRRIASMKEMKQVQDDKQRLTEHFIKVLPQLLDKYV----ADHDKLTNLLSLPQY 507 (792)
Q Consensus 432 ~iLieIL~asVkqa~~g~~p~gR~~~rk~~s~ke~k~~~e~~~~lT~~li~~LP~LL~Ky~----ad~e~v~~LL~ip~~ 507 (792)
+.++=.=.++.--|.. ..|+ + ...|+-+.-..+.--||.|+.+|. .+|--+..++.+|--
T Consensus 549 s~il~~~~~~~~~a~~-n~p~------------~---r~~D~ve~~~~m~~~L~ali~s~~e~c~~~~~fi~~~~~~~de 612 (740)
T COG5537 549 SFILFFREKCIEFAVL-NRPV------------E---RASDQVECFKVMYDRLSALIHSEAERCFVDPKFIISLFKLVDE 612 (740)
T ss_pred hhHHHHHHHHHHHHhh-CCch------------h---hhhhhHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHhhhHh
Confidence 1122111222222210 1111 1 123444666777888888888875 567777778888755
Q ss_pred cChhhhcccchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q psy14013 508 FDLNIYTTSRREKDLDELLKKLQKIVDKHNDTEVLETCAKTLETLC 553 (792)
Q Consensus 508 ~dLe~y~~~r~e~~l~~LL~~I~~~f~~Hsd~~VL~~~a~al~~l~ 553 (792)
.-++-|. .+-|+.+.+++.++|..-++....--| .-|.|+-
T Consensus 613 ~ly~~e~----~kif~k~~ke~~difnS~~~~~~~i~~-~~f~h~~ 653 (740)
T COG5537 613 GLYTDES----NKIFKKCGKELIDIFNSRSKSRMNIVS-GYFRHLM 653 (740)
T ss_pred hchhhHH----HHHHHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHH
Confidence 4444332 334777777777899887776654444 4444543
No 4
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=82.40 E-value=62 Score=38.79 Aligned_cols=131 Identities=11% Similarity=0.152 Sum_probs=56.2
Q ss_pred hhhhcccchhhhHHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHHHhccCchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy14013 510 LNIYTTSRREKDLDELLKKLQKIV-----DKHNDTEVLETCAKTLETLCCEENASIFTRCDVQRRTLIEKTIVDKYTESL 584 (792)
Q Consensus 510 Le~y~~~r~e~~l~~LL~~I~~~f-----~~Hsd~~VL~~~a~al~~l~~~~~~~i~s~~~~~~~eL~d~~l~~~~~~~l 584 (792)
|..|....-.+....|++.|.+|. +..+|++.++.....+.++.-.-. ..+. -..++. =+. .+.+
T Consensus 205 lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs----~~v~--Sskfv~-y~~---~kvl 274 (556)
T PF05918_consen 205 LKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFS----RGVS--SSKFVN-YMC---EKVL 274 (556)
T ss_dssp SGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-B----TTB----HHHHH-HHH---HHTC
T ss_pred CccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhc----CCCC--hHHHHH-HHH---HHhc
Confidence 344443333445667888888877 678899988877776666432200 0111 122322 111 1111
Q ss_pred HHHhhhhhcCCCCChhHHHHHHHHHHHHHHHhcccc-CCCcchhhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHh
Q psy14013 585 DDWNNSLEAGVKPDDDETFNLVSSLKKIATFYSCHN-MGQWNVWDTAYKTILEAQSNSPKAPPQEAVQYCMRACYFSLL 662 (792)
Q Consensus 585 ~~~~~l~~~~~~~~ed~~~~l~~~L~RL~~l~s~~d-ls~w~l~d~~~~iL~~~~~rg~~~l~~E~v~~al~~~~~~l~ 662 (792)
-.|. ..+++.-.++ |+-++.++.+.. ...-.+..+++.+|...+=.. ..++++=...++|+.|.|.
T Consensus 275 P~l~-------~l~e~~kl~l---Lk~lAE~s~~~~~~d~~~~L~~i~~~L~~ymP~~--~~~~~l~fs~vEcLL~afh 341 (556)
T PF05918_consen 275 PKLS-------DLPEDRKLDL---LKLLAELSPFCGAQDARQLLPSIFQLLKKYMPSK--KTEPKLQFSYVECLLYAFH 341 (556)
T ss_dssp CCTT------------HHHHH---HHHHHHHHTT----THHHHHHHHHHHHHTTS------------HHHHHHHHHHHH
T ss_pred CChh-------hCChHHHHHH---HHHHHHHcCCCCcccHHHHHHHHHHHHHHhCCCC--CCCCcccchHhhHHHHHHH
Confidence 1111 1123333344 444444443332 123345666677776554211 2344566677788877777
No 5
>KOG1048|consensus
Probab=69.89 E-value=14 Score=44.94 Aligned_cols=233 Identities=16% Similarity=0.197 Sum_probs=110.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhccCchhhhhhhHHHHH--HHH---HHHHHHHHHHHHHHHhhhhhcCCCC-------Ch
Q psy14013 532 IVDKHNDTEVLETCAKTLETLCCEENASIFTRCDVQRR--TLI---EKTIVDKYTESLDDWNNSLEAGVKP-------DD 599 (792)
Q Consensus 532 ~f~~Hsd~~VL~~~a~al~~l~~~~~~~i~s~~~~~~~--eL~---d~~l~~~~~~~l~~~~~l~~~~~~~-------~e 599 (792)
.++.|.++.|-..++.-+.|+|-.+. .+..++..... +|+ +....+-.+++...++|++-+.... ..
T Consensus 240 ~mL~~q~~~~qsnaaaylQHlcfgd~-~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~ 318 (717)
T KOG1048|consen 240 SMLMSQDPSVQSNAAAYLQHLCFGDN-KIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKEL 318 (717)
T ss_pred HHHhccChhhhHHHHHHHHHHHhhhH-HHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhc
Confidence 46669999999999999999998776 66666654421 222 1122233456666777776554221 22
Q ss_pred hHHHHHHHHHHHHHHHhccccCCC--cch----------hhHHHHHHHHHh---hCC--CCCCC-----HHHHHHHHHHH
Q psy14013 600 DETFNLVSSLKKIATFYSCHNMGQ--WNV----------WDTAYKTILEAQ---SNS--PKAPP-----QEAVQYCMRAC 657 (792)
Q Consensus 600 d~~~~l~~~L~RL~~l~s~~dls~--w~l----------~d~~~~iL~~~~---~rg--~~~l~-----~E~v~~al~~~ 657 (792)
+.+..++..|++..-.--+..+++ |+| ....+..|.+.| ..| ..+.+ .+++..+-.|
T Consensus 319 ~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgc- 397 (717)
T KOG1048|consen 319 NGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGC- 397 (717)
T ss_pred CChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhh-
Confidence 345555555554322222222221 443 222222333222 111 01222 2233332222
Q ss_pred HHHHhcccccchhhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHccc--CchhhhhhhhhhhhhhhhhcCCCCCCCCCC
Q psy14013 658 YFSLLWDLHHCEELAQSGAGTAVEDAVAETKGRLLRFMDSMEEMLKLE--HCEEYKEEKGHLNFLNRKLTAPLPSSRQKN 735 (792)
Q Consensus 658 ~~~l~W~l~~l~~~~~~~~~~~~~~~~~~L~~~~~~f~~~~~~~l~~~--~~~~v~~k~~v~~~l~~~l~~~~~~~~~~~ 735 (792)
|.+++.. +....+......-.+++.+..|++++..+ .++.|..---++.=|.+++-.-+|-+.
T Consensus 398 -------LRNlSs~-----~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~--- 462 (717)
T KOG1048|consen 398 -------LRNLSSA-----GQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKY--- 462 (717)
T ss_pred -------hccccch-----hHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhh---
Confidence 3333332 22223334444444677777777777642 233333333345555566655555533
Q ss_pred CccchHHHhhhhccCCCCCccccchhhhhcccCCCCchhhhhhhccCCCCCCC
Q psy14013 736 EDWQPLELYKTSLLHGESDSVSAATKKNYSRKNKKDMEEEHEELDIDNLSLDD 788 (792)
Q Consensus 736 ~~w~p~~~y~~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (792)
-..+|.-.-+.|..- |.-+.+-++-|+|+ +.+..++.+|...+..+
T Consensus 463 ----~~~~~~~~~~~~~~~--~~~~~gcf~~k~~k-~~~~~~~~~~pe~~~~p 508 (717)
T KOG1048|consen 463 ----RQVLANIARLPGVGP--PAESVGCFGFKKRK-SDDNCDDLPIPERATAP 508 (717)
T ss_pred ----hhHhhcccccccCCC--cccccccccchhhh-chhcccccCCcccccCC
Confidence 123333333333332 22344456666666 33344556655544433
No 6
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=68.43 E-value=8.7 Score=27.39 Aligned_cols=28 Identities=14% Similarity=0.072 Sum_probs=23.4
Q ss_pred HHHHhhhccCcchhHHHHHHHHHHHHHh
Q psy14013 320 KDRIVAMTLDKEYDVAVHAVRLVISILK 347 (792)
Q Consensus 320 k~RlVeM~~D~D~~V~v~AI~Ll~~i~~ 347 (792)
-|.++++..|.+++||..|+.-+..|.+
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 3678899999999999999999988764
No 7
>PTZ00429 beta-adaptin; Provisional
Probab=60.65 E-value=4.3e+02 Score=33.13 Aligned_cols=67 Identities=16% Similarity=0.249 Sum_probs=44.6
Q ss_pred HHHhhHHHHHHhc-------cCHHHHHhhhccccccChhhhcccchhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy14013 480 FIKVLPQLLDKYV-------ADHDKLTNLLSLPQYFDLNIYTTSRREKDLDELLKKLQKIVDKHNDTEVLETCAKTLETL 552 (792)
Q Consensus 480 li~~LP~LL~Ky~-------ad~e~v~~LL~ip~~~dLe~y~~~r~e~~l~~LL~~I~~~f~~Hsd~~VL~~~a~al~~l 552 (792)
++..-|.++..+- .||..+ ....|++-..+-.++..+.+++++.+ |.+..|.++-..+.+++..+
T Consensus 324 i~~~~P~lf~~~~~~Ff~~~~Dp~yI-------K~~KLeIL~~Lane~Nv~~IL~EL~e-Ya~d~D~ef~r~aIrAIg~l 395 (746)
T PTZ00429 324 LLVIFPNLLRTNLDSFYVRYSDPPFV-------KLEKLRLLLKLVTPSVAPEILKELAE-YASGVDMVFVVEVVRAIASL 395 (746)
T ss_pred HHHHCHHHHHHHHHhhhcccCCcHHH-------HHHHHHHHHHHcCcccHHHHHHHHHH-HhhcCCHHHHHHHHHHHHHH
Confidence 3444566666553 355432 22244555555566778889999987 44578999999999999998
Q ss_pred hc
Q psy14013 553 CC 554 (792)
Q Consensus 553 ~~ 554 (792)
+.
T Consensus 396 A~ 397 (746)
T PTZ00429 396 AI 397 (746)
T ss_pred HH
Confidence 75
No 8
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=46.90 E-value=23 Score=36.08 Aligned_cols=33 Identities=18% Similarity=0.413 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhhccCcchhHHHHHHHHHHHHHh
Q psy14013 315 FTSKFKDRIVAMTLDKEYDVAVHAVRLVISILK 347 (792)
Q Consensus 315 Ft~RFk~RlVeM~~D~D~~V~v~AI~Ll~~i~~ 347 (792)
-.+||-++|+++|.+.|..||..|++++..+.+
T Consensus 5 l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~ 37 (187)
T PF12830_consen 5 LVQRYLKNILELCLSSDDSVRLAALQVLELILR 37 (187)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999999999998
No 9
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=46.21 E-value=4e+02 Score=29.00 Aligned_cols=132 Identities=20% Similarity=0.258 Sum_probs=72.6
Q ss_pred cCcchhHHHHHHHHHHHHHhccCCCccccccccccCCCCCCCchHHHHHHHHHhhcccccchhHHHHhhcc--cchhhcc
Q psy14013 328 LDKEYDVAVHAVRLVISILKLFVPDDEFANVHTKGGKRRLKNTPLIRDLVQFFIESELHEHGAYLVDSLIE--SNEMMKD 405 (792)
Q Consensus 328 ~D~D~~V~v~AI~Ll~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~Ll~f~~ese~he~~~ylVDsLw~--~~~~lkD 405 (792)
.| +..|++.|++.+..++-.+..+..+..... .........++.+..++ +++..+--+.+++++-- -...+.+
T Consensus 75 ~~-~~~v~~~al~~l~Dll~~~g~~~~~~~~~~---~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~ 149 (298)
T PF12719_consen 75 KD-DEEVKITALKALFDLLLTHGIDIFDSESDN---DESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD 149 (298)
T ss_pred hC-CHHHHHHHHHHHHHHHHHcCchhccchhcc---CccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 35 999999999999999986654432221110 01112223444455543 34322333555666433 3444555
Q ss_pred hHHHHH-HHc--cCCCCCCCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccHHHhhhhhhhHHHHHHHHHH
Q psy14013 406 WECMTD-LLL--EEPNPKYNEEPLDDRQETSLIELMVCCVRQAATGDAPVGRGPNRRIASMKEMKQVQDDKQRLTEHFIK 482 (792)
Q Consensus 406 We~m~~-~LL--~D~~~~~~e~~L~~~qe~iLieIL~asVkqa~~g~~p~gR~~~rk~~s~ke~k~~~e~~~~lT~~li~ 482 (792)
|+.+.. +++ ++|.+ .+..-|-++|.--..-.+... .+.++.+.+.++|
T Consensus 150 ~~~vL~~Lll~yF~p~t---------~~~~~LrQ~L~~Ffp~y~~s~--------------------~~~Q~~l~~~f~~ 200 (298)
T PF12719_consen 150 PPKVLSRLLLLYFNPST---------EDNQRLRQCLSVFFPVYASSS--------------------PENQERLAEAFLP 200 (298)
T ss_pred HHHHHHHHHHHHcCccc---------CCcHHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHH
Confidence 444443 332 44432 112246666666665554210 1356789999999
Q ss_pred hhHHHHHHhcc
Q psy14013 483 VLPQLLDKYVA 493 (792)
Q Consensus 483 ~LP~LL~Ky~a 493 (792)
.+-.+...+..
T Consensus 201 ~l~~~~~~~~~ 211 (298)
T PF12719_consen 201 TLRTLSNAPDE 211 (298)
T ss_pred HHHHHHhCccc
Confidence 99998888776
No 10
>PHA01750 hypothetical protein
Probab=44.41 E-value=69 Score=27.46 Aligned_cols=47 Identities=23% Similarity=0.326 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHH-HHhHhhHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHh
Q psy14013 226 AAMKLMTALVDVALVV-SVNLDNTQRQYESERQKTRDKRASDRLESLMTKRQELEEN 281 (792)
Q Consensus 226 ~aLkl~taLv~va~~l-~~~l~~~qrQleaEkkK~~~~r~~~rle~L~~~i~e~~e~ 281 (792)
.-++|-++|-+...++ ..+++|...|+++-++| .+.+++++.++..+
T Consensus 24 lYlKIKq~lkdAvkeIV~~ELdNL~~ei~~~kik---------qDnl~~qv~eik~k 71 (75)
T PHA01750 24 LYLKIKQALKDAVKEIVNSELDNLKTEIEELKIK---------QDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------HHHHHHHHHHHHHh
Confidence 3468889999888875 58899999998876542 34466666555444
No 11
>KOG1059|consensus
Probab=38.89 E-value=3.7e+02 Score=33.34 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhhccCcchhHHHHHHHHHHHHHh
Q psy14013 315 FTSKFKDRIVAMTLDKEYDVAVHAVRLVISILK 347 (792)
Q Consensus 315 Ft~RFk~RlVeM~~D~D~~V~v~AI~Ll~~i~~ 347 (792)
|.++||+=|+....|+|..+|..|+.||..|..
T Consensus 333 ~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 333 AVQAHKDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred HHHHhHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 789999999988899999999999999987766
No 12
>PRK11637 AmiB activator; Provisional
Probab=36.66 E-value=2.2e+02 Score=32.84 Aligned_cols=86 Identities=14% Similarity=0.120 Sum_probs=41.2
Q ss_pred HHHHhHhhHHHHHHHHHhhccc-----chhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhcc-CccchhhHh
Q psy14013 240 VVSVNLDNTQRQYESERQKTRD-----KRASDRLESLMTKRQELEENMDEIKNMLTYMFKSVFALQPLYA-SEDLKGKLE 313 (792)
Q Consensus 240 ~l~~~l~~~qrQleaEkkK~~~-----~r~~~rle~L~~~i~e~~e~~~~i~~~i~~iF~~VFaL~~Ly~-~~d~~~~L~ 313 (792)
.+..+++..++|++..+++... +.....++.+++++..++.++..++.-|..+=. .+..+-. -.+.-..+.
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~---ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNK---QIDELNASIAKLEQQQA 120 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3455566666665543332211 011223344444444444444444433333222 1122211 133456777
Q ss_pred hHHHHHHHHHhhhcc
Q psy14013 314 LFTSKFKDRIVAMTL 328 (792)
Q Consensus 314 ~Ft~RFk~RlVeM~~ 328 (792)
..-..|+.|+..|-.
T Consensus 121 ~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 121 AQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888889999999964
No 13
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=35.73 E-value=1.7e+02 Score=29.94 Aligned_cols=71 Identities=17% Similarity=0.239 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy14013 221 HTATLAAMKLMTALVDVALVVSVNLDNTQRQYESERQKTRDKRASDRLESLMTKRQELEENMDEIKNMLTYMF 293 (792)
Q Consensus 221 HTATl~aLkl~taLv~va~~l~~~l~~~qrQleaEkkK~~~~r~~~rle~L~~~i~e~~e~~~~i~~~i~~iF 293 (792)
+|+.=+.-++..-|..+...|..+++.++++++.|=++... .-+++|.++.+.+.+..+-..+++-++.|-
T Consensus 94 ~tsancs~QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~--~i~~le~~~~~~k~LrnKa~~L~~eL~~F~ 164 (171)
T PF04799_consen 94 FTSANCSHQVQQELSSTFARLCQQVDQTKNELEDEIKQLEK--EIQRLEEIQSKSKTLRNKANWLESELERFQ 164 (171)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777888888888888888888889999888665533 256788888888888777777777666543
No 14
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=33.38 E-value=2.7e+02 Score=31.25 Aligned_cols=18 Identities=17% Similarity=0.436 Sum_probs=14.8
Q ss_pred chhhHhhHHHHHHHHHhh
Q psy14013 308 LKGKLELFTSKFKDRIVA 325 (792)
Q Consensus 308 ~~~~L~~Ft~RFk~RlVe 325 (792)
++.=++.||..||.+|++
T Consensus 320 ~isY~G~f~~~~R~~l~~ 337 (344)
T PF12777_consen 320 FISYLGPFTPEYRQELLK 337 (344)
T ss_dssp HHHCCCCTSHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHH
Confidence 566788899999999984
No 15
>KOG2153|consensus
Probab=32.40 E-value=5.7e+02 Score=31.35 Aligned_cols=50 Identities=24% Similarity=0.417 Sum_probs=30.5
Q ss_pred cchhHHhhHHHHHHHH-------H-----H-HhccCccc-c--hhhHHHHHHHHHhhcCCCCCchh
Q psy14013 171 QWKKFRSNFCDFVAHL-------V-----K-QCQYSIIY-D--QYLMDNVISLLTGLSDSQVRAFR 220 (792)
Q Consensus 171 ~~K~Fr~n~~eF~~~L-------V-----~-~~~~~iLy-D--~~Lm~~l~~wLt~lS~S~vR~FR 220 (792)
.||+|-+.+..|+..+ | . +|-..++- + -++.++++..+.-+.+++-|+.|
T Consensus 276 ~Yk~ylQkLe~~vK~~~~~~~~~v~l~~vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s 341 (704)
T KOG2153|consen 276 QYKSYLQKLEQFVKDLSLRTPQQVSLAQVAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVS 341 (704)
T ss_pred HHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchH
Confidence 3466666666676666 1 1 12222222 2 34788999999888888866655
No 16
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=30.48 E-value=1.5e+02 Score=27.25 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=16.3
Q ss_pred HHhhhccCcchhHHHHHHHHHHHHH
Q psy14013 322 RIVAMTLDKEYDVAVHAVRLVISIL 346 (792)
Q Consensus 322 RlVeM~~D~D~~V~v~AI~Ll~~i~ 346 (792)
-|...+.|.|.+|+..| .+|..++
T Consensus 72 ~L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 72 ALCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHHHcCCchhHHHHH-HHHHHHh
Confidence 34445689999998877 5555554
No 17
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=29.91 E-value=5.1e+02 Score=25.13 Aligned_cols=79 Identities=23% Similarity=0.365 Sum_probs=36.6
Q ss_pred HHHHHHHhh--cCCCCCchhHHHHH-HHHHHH-HHHH-HHHHHHHHhHhhHHHHHHHHHhhcccchhhhHHHHHHHHHHH
Q psy14013 203 NVISLLTGL--SDSQVRAFRHTATL-AAMKLM-TALV-DVALVVSVNLDNTQRQYESERQKTRDKRASDRLESLMTKRQE 277 (792)
Q Consensus 203 ~l~~wLt~l--S~S~vR~FRHTATl-~aLkl~-taLv-~va~~l~~~l~~~qrQleaEkkK~~~~r~~~rle~L~~~i~e 277 (792)
.+.-|+.+. ....+||+--...+ .|-.++ -+++ .|+..+- +--..|+...|++|... -.++++.|+.++.+
T Consensus 48 ~l~~~~~~~~~~~~~i~pL~e~~Aie~Gaell~E~fiF~Va~~li--~~E~~Rs~~ke~~Ke~~--~~~~l~~L~~~i~~ 123 (134)
T PF07047_consen 48 RLKMRILGLKGKPRKIRPLNEEKAIELGAELLGEAFIFSVAAGLI--IYEYWRSARKEAKKEEE--LQERLEELEERIEE 123 (134)
T ss_pred HHHHHHhccccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHHHH--HHHHHHHHHHHHHH
Confidence 345677777 55677777655433 111111 1111 1222221 11233444444443321 14566777777777
Q ss_pred HHHhHHHH
Q psy14013 278 LEENMDEI 285 (792)
Q Consensus 278 ~~e~~~~i 285 (792)
++...+..
T Consensus 124 L~~~~~~~ 131 (134)
T PF07047_consen 124 LEEQVEKQ 131 (134)
T ss_pred HHHHHHHH
Confidence 66665553
No 18
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=28.00 E-value=3.5e+02 Score=27.72 Aligned_cols=47 Identities=15% Similarity=0.136 Sum_probs=34.9
Q ss_pred hhhhccCccchhhHhhHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHh
Q psy14013 299 LQPLYASEDLKGKLELFTSKFKDRIVAMTLDKEYDVAVHAVRLVISILK 347 (792)
Q Consensus 299 L~~Ly~~~d~~~~L~~Ft~RFk~RlVeM~~D~D~~V~v~AI~Ll~~i~~ 347 (792)
|..|+ ..+...++.|.+.|-+-|+..+.|.-.-++..|...|..|.+
T Consensus 77 l~~l~--~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~ 123 (228)
T PF12348_consen 77 LSDLA--RQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIE 123 (228)
T ss_dssp HHHHH--HHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHT
T ss_pred HHHHH--HHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHH
Confidence 34444 334456888889999999999999888999999999988887
No 19
>PHA03386 P10 fibrous body protein; Provisional
Probab=27.62 E-value=2.4e+02 Score=25.95 Aligned_cols=53 Identities=26% Similarity=0.418 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHhHHHHHHHHH
Q psy14013 232 TALVDVALVVSVNLDNTQRQYESERQKTRDKRASDRLESLMTKRQELEENMDEIKNMLT 290 (792)
Q Consensus 232 taLv~va~~l~~~l~~~qrQleaEkkK~~~~r~~~rle~L~~~i~e~~e~~~~i~~~i~ 290 (792)
+-.-+-.+.++..++..|.|++.-+.. ...++++-.++.++..+.+.|.+|++
T Consensus 8 l~Ir~dIkavd~KVdaLQ~qV~dv~~n------~~~LDa~~~qL~~l~tkV~~Iq~iLn 60 (94)
T PHA03386 8 TQILDAVQEVDTKVDALQTQLNGLEED------SQPLDGLPAQLTELDTKVSDIQSILT 60 (94)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhc------chhhhhHHHHHHHHHHHHHHHHHhcC
Confidence 333344556778888889898776543 35689999999999999999888876
No 20
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=27.24 E-value=1.1e+02 Score=24.22 Aligned_cols=36 Identities=11% Similarity=0.178 Sum_probs=28.3
Q ss_pred hhHhhHHHHHHHHHhhhccCcchhHHHHHHHHHHHH
Q psy14013 310 GKLELFTSKFKDRIVAMTLDKEYDVAVHAVRLVISI 345 (792)
Q Consensus 310 ~~L~~Ft~RFk~RlVeM~~D~D~~V~v~AI~Ll~~i 345 (792)
..+..|...--+.|+.+..|.+.+||..|+.-|..|
T Consensus 20 ~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 20 ELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 455667777777788888888889999999887654
No 21
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=26.46 E-value=5e+02 Score=32.22 Aligned_cols=172 Identities=16% Similarity=0.137 Sum_probs=102.4
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhhh------hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy14013 520 KDLDELLKKLQKIVDKHNDTEVLETCAKTLETLCCEENASIFT------RCDVQRRTLIEKTIVDKYTESLDDWNNSLEA 593 (792)
Q Consensus 520 ~~l~~LL~~I~~~f~~Hsd~~VL~~~a~al~~l~~~~~~~i~s------~~~~~~~eL~d~~l~~~~~~~l~~~~~l~~~ 593 (792)
..+..||+.+.+.+. +++..+-...-.++..++.-+.-.... ....+....+. .+.+.+.+.+..+.
T Consensus 437 ~~~~~lW~~l~~~~~-~~~~~la~~lL~~~~~l~~l~~~~~~~~~~~~~~~~~~~N~~~~-~~~~~~~~il~rls----- 509 (727)
T PF12726_consen 437 RISPNLWKALLKSLD-SDNPDLAKALLKSLSPLIGLEKFPPKKEKDELDPAKTQFNKSLG-QITDLISQILERLS----- 509 (727)
T ss_pred hhhHHHHHHHHHhhc-CCChHHHHHHHHHHHHhccccccCCcccccCcchHHHHHHHHHH-HHHHHHHHHHHHHh-----
Confidence 358899999999888 888888888888888887665311111 12222233333 44444444444332
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhccccCCC-cchhhHHHHHHHHHhhC-CCCCCCHHHHHHHHHHHHHHHhcccccchhh
Q psy14013 594 GVKPDDDETFNLVSSLKKIATFYSCHNMGQ-WNVWDTAYKTILEAQSN-SPKAPPQEAVQYCMRACYFSLLWDLHHCEEL 671 (792)
Q Consensus 594 ~~~~~ed~~~~l~~~L~RL~~l~s~~dls~-w~l~d~~~~iL~~~~~r-g~~~l~~E~v~~al~~~~~~l~W~l~~l~~~ 671 (792)
..+.+++..+..-=.=..++.+|. +++ -++++....+|+..-.- |+.+.=.+++.........++.|-+..+.+.
T Consensus 510 --~~~~~~L~~l~~d~~~~~~i~s~l-fsp~~~l~qaA~~llk~~~d~~~R~e~i~~ll~~~~~~tL~ai~~~l~~~~~~ 586 (727)
T PF12726_consen 510 --DFDPSHLKELLSDPDAAQAIWSLL-FSPDDDLYQAAQDLLKQAFDVDGRLEAIQALLQSNFSPTLSAINWSLRQLTKL 586 (727)
T ss_pred --cCCHHHHHHHHcCcchhhHHHhhe-eCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 123444444433212233333443 333 36888888898876532 2222233788888899999999999999885
Q ss_pred hhcCCCCchHHHHHHHHHHHHHHHHHHHHHHcc
Q psy14013 672 AQSGAGTAVEDAVAETKGRLLRFMDSMEEMLKL 704 (792)
Q Consensus 672 ~~~~~~~~~~~~~~~L~~~~~~f~~~~~~~l~~ 704 (792)
- .-.+...-++-+..-++.+|.-...+|+.
T Consensus 587 ~---~~~p~pr~vr~~~DIi~~Lcdp~~GiLr~ 616 (727)
T PF12726_consen 587 K---FFEPCPRMVRCLMDIIEVLCDPVSGILRN 616 (727)
T ss_pred h---hhcchHHHHHHHHHHHHHHcCCCCCcccc
Confidence 2 12333346666666667777777777765
No 22
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=24.70 E-value=4.5e+02 Score=23.31 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=36.7
Q ss_pred HHHHHHHHhHhhHHHHHHHHHhhccc-chhhhHHHHHHHHHHHHHHhHHHHHHHHH
Q psy14013 236 DVALVVSVNLDNTQRQYESERQKTRD-KRASDRLESLMTKRQELEENMDEIKNMLT 290 (792)
Q Consensus 236 ~va~~l~~~l~~~qrQleaEkkK~~~-~r~~~rle~L~~~i~e~~e~~~~i~~~i~ 290 (792)
+-.+.++..++..|.|.+.-+..-.. .--.+|++++..++..++.+...|.++++
T Consensus 11 ~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL~ 66 (75)
T PF05531_consen 11 QDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDILN 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33455677788888888765554321 01245778888888888888888777765
No 23
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=24.12 E-value=3.8e+02 Score=26.04 Aligned_cols=11 Identities=27% Similarity=0.434 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q psy14013 267 RLESLMTKRQE 277 (792)
Q Consensus 267 rle~L~~~i~e 277 (792)
|++.+..++++
T Consensus 69 RId~vd~klDe 79 (126)
T PF07889_consen 69 RIDRVDDKLDE 79 (126)
T ss_pred HHHHHHhhHHH
Confidence 34444444433
No 24
>KOG2211|consensus
Probab=23.98 E-value=1.5e+03 Score=28.23 Aligned_cols=71 Identities=23% Similarity=0.242 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHhhccc----c-----hhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----hhh
Q psy14013 234 LVDVALVVSVNLDNTQRQYESERQKTRD----K-----RASDRLESLMTKRQELEENMDEIKNMLTYMFKSVF----ALQ 300 (792)
Q Consensus 234 Lv~va~~l~~~l~~~qrQleaEkkK~~~----~-----r~~~rle~L~~~i~e~~e~~~~i~~~i~~iF~~VF----aL~ 300 (792)
+..++..|...+..+.|||.+.-.|+.. + +..--+.++..++.++++...+|.+-++.-++.++ .|.
T Consensus 73 ia~q~~~L~q~lr~ldrqLh~qv~~Rh~allaQat~~~~~d~~l~sl~~~v~~lqs~i~riknd~~epyk~i~~kt~vl~ 152 (797)
T KOG2211|consen 73 IATQCDDLTQKLRELDRQLHAQVLKRHMALLAQATEELFEDLELRSLLVKVAELQSEIKRIKNDNKEPYKIIWLKTMVLT 152 (797)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3455666777788888999887655532 1 11223456777888899999999998888899888 666
Q ss_pred hhcc
Q psy14013 301 PLYA 304 (792)
Q Consensus 301 ~Ly~ 304 (792)
+|--
T Consensus 153 rLhv 156 (797)
T KOG2211|consen 153 RLHV 156 (797)
T ss_pred HHHH
Confidence 6653
No 25
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=23.16 E-value=1.2e+02 Score=25.25 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=26.9
Q ss_pred cccHHHHHHHHHHHHhhChHHHHHHHHHHHHHhc
Q psy14013 96 QVRLIMLVDEWIEQYKSHKESALLSLMQFFINGS 129 (792)
Q Consensus 96 ~~~~~~va~eWie~Y~~d~~~Al~eLINfil~~c 129 (792)
+.+++++++...+.|..+++.+-.++..|+-+..
T Consensus 29 ~~t~~ei~~~l~~~y~~~~~~~~~dv~~fl~~L~ 62 (68)
T PF05402_consen 29 PRTVEEIVDALAEEYDVDPEEAEEDVEEFLEQLR 62 (68)
T ss_dssp SS-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999988886543
No 26
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.46 E-value=7.3e+02 Score=24.85 Aligned_cols=30 Identities=17% Similarity=0.281 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy14013 265 SDRLESLMTKRQELEENMDEIKNMLTYMFK 294 (792)
Q Consensus 265 ~~rle~L~~~i~e~~e~~~~i~~~i~~iF~ 294 (792)
..+++.++.++.+++...+.+..-.+.|=.
T Consensus 144 ~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~ 173 (218)
T cd07596 144 PAKVEELEEELEEAESALEEARKRYEEISE 173 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888888888777776655554433
No 27
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=21.94 E-value=9.7e+02 Score=26.26 Aligned_cols=142 Identities=16% Similarity=0.200 Sum_probs=79.7
Q ss_pred hhHHhhHHHHHHHHHHHhccCcccchhhHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHH
Q psy14013 173 KKFRSNFCDFVAHLVKQCQYSIIYDQYLMDNVISLLTGLSDSQVRAFRHTATLAAMKLMTALVDVALVVSVNLDNTQRQY 252 (792)
Q Consensus 173 K~Fr~n~~eF~~~LV~~~~~~iLyD~~Lm~~l~~wLt~lS~S~vR~FRHTATl~aLkl~taLv~va~~l~~~l~~~qrQl 252 (792)
+.|+..+..|.+.|......= .-+-.+.+=..+++-+.+-.|.--+|...-.|.+-...|-.....++.
T Consensus 163 ~~FKekLesfa~~L~~KS~eI-----~tFttv~s~k~eF~L~ELESFKEinTtwfNgmksEWA~V~~AwkneLs------ 231 (353)
T PF01540_consen 163 KDFKEKLESFADLLNKKSREI-----DTFTTVQSTKEEFVLNELESFKEINTTWFNGMKSEWARVQEAWKNELS------ 231 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHhhccchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH------
Confidence 578888888888887654310 012223333333443444555655555555555555444444333332
Q ss_pred HHHHhhcccchhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhccCcc--chhhHhhH---HHHHHHHHhhhc
Q psy14013 253 ESERQKTRDKRASDRLESLMTKRQELEENMDEIKNMLTYMFKSVFALQPLYASED--LKGKLELF---TSKFKDRIVAMT 327 (792)
Q Consensus 253 eaEkkK~~~~r~~~rle~L~~~i~e~~e~~~~i~~~i~~iF~~VFaL~~Ly~~~d--~~~~L~~F---t~RFk~RlVeM~ 327 (792)
-+.++-+-+++++..-.+|.++=+.+=.++=-|-++|+..+ +...+..| ++.|-+.|++-.
T Consensus 232 --------------EINSI~~gvEeLkKLAqEIss~Sn~lk~TIseLEKkFkIdd~tn~~e~k~fK~qlE~ladqLl~ks 297 (353)
T PF01540_consen 232 --------------EINSIIKGVEELKKLAQEISSHSNKLKATISELEKKFKIDDSTNKEEMKKFKNQLENLADQLLEKS 297 (353)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHhh
Confidence 23333345556666666666666666555557778887443 23344444 678888888877
Q ss_pred cCcchhHHHHHH
Q psy14013 328 LDKEYDVAVHAV 339 (792)
Q Consensus 328 ~D~D~~V~v~AI 339 (792)
+..|.=|.|.++
T Consensus 298 ~~id~f~tvt~~ 309 (353)
T PF01540_consen 298 RQIDEFVTVTSA 309 (353)
T ss_pred cccchheeeecc
Confidence 777766666554
No 28
>PF05752 Calici_MSP: Calicivirus minor structural protein; InterPro: IPR008437 This family consists of minor structural proteins largely from the Caliciviridaei family of viruses, including Sapporo virus (Hu/Chiba/041413/2004/JP) and Sapporo virus (Hu/Ehime/04-1680/2004/JP). These viruses cause gastroenteritis. The function of this family is unknown.
Probab=21.86 E-value=6.4e+02 Score=25.67 Aligned_cols=72 Identities=21% Similarity=0.295 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhhcc-cchhhhHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHH
Q psy14013 225 LAAMKLMTALVDVALVVSVNLDNTQRQYESERQKTR-DKRASDRLESLMTKRQELEENM------DEIKNMLTYMFKSVF 297 (792)
Q Consensus 225 l~aLkl~taLv~va~~l~~~l~~~qrQleaEkkK~~-~~r~~~rle~L~~~i~e~~e~~------~~i~~~i~~iF~~VF 297 (792)
.-||...-+|+|+|.+++.-+. -+||++.-++--. .+..-.|-+.|+++-.++...+ ...+..++.-|+.|.
T Consensus 5 ~GAl~~~G~L~D~AGtIsnIV~-qqrqv~~~~~Qn~lqq~w~~kqe~Lq~~~~dls~~La~ngpa~r~~sa~~aGF~~v~ 83 (167)
T PF05752_consen 5 VGALQGAGSLVDMAGTISNIVA-QQRQVDQLEKQNQLQQQWMNKQEQLQRRQQDLSRDLAVNGPALRYQSAVSAGFDPVS 83 (167)
T ss_pred HHHHHhhhhHHHhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHcCCCHHH
Confidence 3478888999999999874433 4666655432110 0111234455555555554443 234445556677776
No 29
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=20.59 E-value=4.4e+02 Score=28.87 Aligned_cols=34 Identities=21% Similarity=0.426 Sum_probs=20.3
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy14013 263 RASDRLESLMTKRQELEENMDEIKNMLTYMFKSV 296 (792)
Q Consensus 263 r~~~rle~L~~~i~e~~e~~~~i~~~i~~iF~~V 296 (792)
|+.+|+.+|++-+.-+-+..+.++.=+...|+.-
T Consensus 208 R~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y 241 (267)
T PF10234_consen 208 RNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIY 241 (267)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777666666555555555555555543
No 30
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=20.10 E-value=5.4e+02 Score=25.56 Aligned_cols=60 Identities=13% Similarity=0.222 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------HhHhhHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHh
Q psy14013 222 TATLAAMKLMTALVDVALVVS------VNLDNTQRQYESERQKTRDKRASDRLESLMTKRQELEEN 281 (792)
Q Consensus 222 TATl~aLkl~taLv~va~~l~------~~l~~~qrQleaEkkK~~~~r~~~rle~L~~~i~e~~e~ 281 (792)
+-++.++++.+++.....+-. .......+++..+.++.+.+....+.++++++..++.+.
T Consensus 16 ~i~v~~~~~~~~~~s~l~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~ 81 (168)
T PF01956_consen 16 TIVVFLIAILRGLISELLQKFLIDRKMDKYQKRMKEFQKRYRELRKNGDFKKPKKLEKRQMELMEK 81 (168)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHH
Confidence 445555565555554433311 223333344444433333322233455666655555433
No 31
>PF01452 Rota_NSP4: Rotavirus non structural protein; InterPro: IPR002107 This entry contains rotaviral non-structural protein 4 (NSP4) as well as related proteins: NSP5, NS28, and NCVP5. The final steps in the assembly of rotavirus occur in the lumen of the endoplasmic reticulum (ER). Targeting of the immature inner capsid particle (ICP) to this compartment is mediated by the cytoplasmic tail of NSP4, located in the ER membrane [, ].; PDB: 2O1J_D 1G1J_B 1G1I_B 2O1K_B 3MIW_A.
Probab=20.08 E-value=44 Score=33.24 Aligned_cols=40 Identities=13% Similarity=0.355 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhcCCCcccCccccCCCchHHHHHHHHHHH
Q psy14013 117 ALLSLMQFFINGSGCRGKITSNMANNMEHAAIIRKMTEEF 156 (792)
Q Consensus 117 Al~eLINfil~~cGc~~~It~~d~~d~d~~~ii~~l~e~f 156 (792)
.+..++|++++.+|.+.+|+..|--+...+-++.+|.++.
T Consensus 71 ~ivTI~N~llklaGykeqittkDeie~qmdrivkemrrQl 110 (173)
T PF01452_consen 71 CIVTIFNTLLKLAGYKEQITTKDEIEKQMDRIVKEMRRQL 110 (173)
T ss_dssp ------------------------HHHHHHHHHHHHHHHH
T ss_pred EEEeehhhHHHHhcccccCCcHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999998876666667777777664
Done!