Query psy14013
Match_columns 792
No_of_seqs 190 out of 276
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 17:20:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14013.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14013hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qk1_A Protein STU2; STU2P, XM 31.2 4.1E+02 0.014 26.5 12.3 36 317-352 190-225 (249)
2 3q5w_A Protein CUT8; proteasom 28.3 1.4E+02 0.0049 30.6 7.9 129 96-243 64-202 (245)
3 1z8u_A Alpha-hemoglobin stabil 24.6 43 0.0015 29.2 2.7 16 96-111 34-49 (102)
4 1t3j_A Mitofusin 1; coiled coi 23.5 1.9E+02 0.0064 25.6 6.6 70 221-292 21-90 (96)
5 3b2a_A TON_1937, putative unch 21.4 78 0.0027 32.7 4.4 51 295-347 53-104 (265)
6 2qk1_A Protein STU2; STU2P, XM 20.9 6.2E+02 0.021 25.1 11.7 162 520-725 56-223 (249)
7 1deq_A Fibrinogen (alpha chain 17.8 3E+02 0.01 30.0 8.1 77 266-347 67-144 (390)
8 2of3_A ZYG-9; multifunctional 14.4 9.7E+02 0.033 24.5 13.6 28 321-348 210-237 (266)
9 4gmo_A Putative uncharacterize 14.4 8.4E+02 0.029 28.1 11.7 33 524-556 75-107 (684)
10 2pnv_A Small conductance calci 13.8 3.1E+02 0.011 20.6 5.0 15 229-243 2-16 (43)
No 1
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=31.16 E-value=4.1e+02 Score=26.47 Aligned_cols=36 Identities=8% Similarity=0.163 Sum_probs=29.0
Q ss_pred HHHHHHHhhhccCcchhHHHHHHHHHHHHHhccCCC
Q psy14013 317 SKFKDRIVAMTLDKEYDVAVHAVRLVISILKLFVPD 352 (792)
Q Consensus 317 ~RFk~RlVeM~~D~D~~V~v~AI~Ll~~i~~lf~~~ 352 (792)
..+-+.++....|.+.+||..|+..+..|.+.+..+
T Consensus 190 ~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~ 225 (249)
T 2qk1_A 190 DEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMN 225 (249)
T ss_dssp TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHH
Confidence 445555666668999999999999999999977654
No 2
>3q5w_A Protein CUT8; proteasome, tether, chromosome, cell cycle, dimer, NOVE; 2.75A {Schizosaccharomyces pombe} PDB: 3q5x_A
Probab=28.30 E-value=1.4e+02 Score=30.58 Aligned_cols=129 Identities=11% Similarity=0.110 Sum_probs=84.3
Q ss_pred cccHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcCCCcccCccccCCCchHHHHHHHHHHHhhccCccCcccC---Cccc
Q psy14013 96 QVRLIMLVDEWIEQYKSHKESALLSLMQFFINGSGCRGKITSNMANNMEHAAIIRKMTEEFDEESGEYPLIMA---GQQW 172 (792)
Q Consensus 96 ~~~~~~va~eWie~Y~~d~~~Al~eLINfil~~cGc~~~It~~d~~d~d~~~ii~~l~e~f~e~s~eYPLi~k---~k~~ 172 (792)
+..+..++.+-++ .+|+ + -+-|...+ -.++....+..+..-+++-...||.-.. .-.|
T Consensus 64 k~qL~sLL~~L~~---~HPe--l---~qeI~~~~-----------P~Psl~~al~~L~~~~~~i~~a~PY~~~~~dDYaY 124 (245)
T 3q5w_A 64 KQQLFTILLQCVE---KHPD--L---ARDIRGIL-----------PAPSMDTCVETLRKLLINLNDSFPYGGDKRGDYAF 124 (245)
T ss_dssp HHHHHHHHHHHHH---HCTH--H---HHHHHTTS-----------CCCCHHHHHHHHHHHHHHHHHTSCSSSCTTSHHHH
T ss_pred HHHHHHHHHHHHH---hCch--H---HHHHhhcC-----------CCCCHHHHHHHHHHHHHHHHHhCCCCCCCccchhH
Confidence 5667777777775 5555 1 11121111 1233334444443333333445777521 1357
Q ss_pred hhHHhhHHHHHHHHHHHhc-c-C-cccc----hhhHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14013 173 KKFRSNFCDFVAHLVKQCQ-Y-S-IIYD----QYLMDNVISLLTGLSDSQVRAFRHTATLAAMKLMTALVDVALVVSV 243 (792)
Q Consensus 173 K~Fr~n~~eF~~~LV~~~~-~-~-iLyD----~~Lm~~l~~wLt~lS~S~vR~FRHTATl~aLkl~taLv~va~~l~~ 243 (792)
.+.|..+.+|+++|+..+- . . .-.. =.|++.....+..|-.=..-.++|+--.|--.|..++|-|..++.+
T Consensus 125 ~RVK~~L~eFl~~L~Df~~~fLPP~e~q~~~SL~FLd~aT~iIh~LP~w~~~s~n~~k~~ayeqis~aW~~vi~ea~k 202 (245)
T 3q5w_A 125 NRIREKYMAVLHALNDMVPCYLPPYSTCFEKNITFLDAATNVVHELPEFHNPNHNVYKSQAYYELTGAWLVVLRQLED 202 (245)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGSTBTCCCHHHHHHHHHHHHHHHHTSCCCSSSGGGHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHhhhccCCCccccHHHHHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999774 2 2 1121 1378888999999988888899999988888999999999988664
No 3
>1z8u_A Alpha-hemoglobin stabilizing protein; alpha haemoglobin, AHSP, oxidation, interaction, electron transport; HET: HEM; 2.40A {Homo sapiens} SCOP: a.7.11.1 PDB: 1y01_A* 1w0b_A 3ovu_A* 1w09_A 1w0a_A 3ia3_A* 1xzy_A
Probab=24.59 E-value=43 Score=29.21 Aligned_cols=16 Identities=19% Similarity=0.752 Sum_probs=13.6
Q ss_pred cccHHHHHHHHHHHHh
Q psy14013 96 QVRLIMLVDEWIEQYK 111 (792)
Q Consensus 96 ~~~~~~va~eWie~Y~ 111 (792)
..++-.||.+|+..|-
T Consensus 34 ee~MvtvV~DWvnfYi 49 (102)
T 1z8u_A 34 EEDMVTVVEDWMNFYI 49 (102)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5578899999999984
No 4
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=23.49 E-value=1.9e+02 Score=25.58 Aligned_cols=70 Identities=16% Similarity=0.226 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy14013 221 HTATLAAMKLMTALVDVALVVSVNLDNTQRQYESERQKTRDKRASDRLESLMTKRQELEENMDEIKNMLTYM 292 (792)
Q Consensus 221 HTATl~aLkl~taLv~va~~l~~~l~~~qrQleaEkkK~~~~r~~~rle~L~~~i~e~~e~~~~i~~~i~~i 292 (792)
.|+.=++-++..=|..+...|...++.+++.++.|-+.... .-.++|.++++.+.+..+-..|++-+++|
T Consensus 21 ~TSsncshQVQqELs~tfarLc~~Vd~t~~eL~~EI~~L~~--eI~~LE~iqs~aK~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 21 FTSANCSHQVQQEMATTFARLCQQVDMTQKHLEEEIARLSK--EIDQLEKMQNNSKLLRNKAVQLESELENF 90 (96)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 35555666777777777777777777777777776554322 13456666666666666655555555443
No 5
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=21.39 E-value=78 Score=32.75 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=39.0
Q ss_pred HHHhhhhhccCccchhhHhh-HHHHHHHHHhhhccCcchhHHHHHHHHHHHHHh
Q psy14013 295 SVFALQPLYASEDLKGKLEL-FTSKFKDRIVAMTLDKEYDVAVHAVRLVISILK 347 (792)
Q Consensus 295 ~VFaL~~Ly~~~d~~~~L~~-Ft~RFk~RlVeM~~D~D~~V~v~AI~Ll~~i~~ 347 (792)
++|+|..+.+.-+ ..++. -.+|+-++||+.+.++|..|++.|++++..++.
T Consensus 53 aL~~LeellK~~~--~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe 104 (265)
T 3b2a_A 53 AFVALGEILKRAD--SDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVK 104 (265)
T ss_dssp HHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcc--ccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc
Confidence 4446666654322 33444 468999999999999999999999999988776
No 6
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=20.91 E-value=6.2e+02 Score=25.07 Aligned_cols=162 Identities=12% Similarity=0.125 Sum_probs=85.0
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhh-hhhH-HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q psy14013 520 KDLDELLKKLQKIVDKHNDTEVLETCAKTLETLCCEENASIF-TRCD-VQRRTLIEKTIVDKYTESLDDWNNSLEAGVKP 597 (792)
Q Consensus 520 ~~l~~LL~~I~~~f~~Hsd~~VL~~~a~al~~l~~~~~~~i~-s~~~-~~~~eL~d~~l~~~~~~~l~~~~~l~~~~~~~ 597 (792)
..|..+++.+.+.+.+.++..|...|..++..+++. +. ...+ .....++- .+.+.+.+ .
T Consensus 56 ~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~----l~~~~f~~~y~~~llp-~ll~~l~d-----------k--- 116 (249)
T 2qk1_A 56 QNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDK----LKTPGFSKDYVSLVFT-PLLDRTKE-----------K--- 116 (249)
T ss_dssp CCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH----HCTTTSCHHHHHHHHH-HHHHGGGC-----------C---
T ss_pred ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh----cccccccHHHHHHHHH-HHHHHHcC-----------C---
Confidence 357788999999888899999999999999999852 22 2222 33334443 33222211 0
Q ss_pred ChhHH-HHHHHHHHHHHHHhccccC-CCcchhhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHhcccccchhhhhcC
Q psy14013 598 DDDET-FNLVSSLKKIATFYSCHNM-GQWNVWDTAYKTILEAQSNSPKAPPQEAVQYCMRACYFSLLWDLHHCEELAQSG 675 (792)
Q Consensus 598 ~ed~~-~~l~~~L~RL~~l~s~~dl-s~w~l~d~~~~iL~~~~~rg~~~l~~E~v~~al~~~~~~l~W~l~~l~~~~~~~ 675 (792)
...+ .....+ +.+|....+- ....-.+.++..|...+.+. ...+-..++.++..++- ..
T Consensus 117 -k~~V~~aa~~a---l~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k----~~~vk~~al~~l~~~~~-------~~---- 177 (249)
T 2qk1_A 117 -KPSVIEAIRKA---LLTICKYYDPLASSGRNEDMLKDILEHMKHK----TPQIRMECTQLFNASMK-------EE---- 177 (249)
T ss_dssp -CHHHHHHHHHH---HHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS----SHHHHHHHHHHHHHHHH-------HC----
T ss_pred -CHHHHHHHHHH---HHHHHHHccccccCCcHHHHHHHHHHHHcCC----ChHHHHHHHHHHHHHHH-------Hc----
Confidence 0111 111222 2233322221 11111233444444444332 34555566655554442 11
Q ss_pred CCCchHHHHHHHHHHH-HHHHHHHHHHHcccCchhhhhhhhh-hhhhhhhhc
Q psy14013 676 AGTAVEDAVAETKGRL-LRFMDSMEEMLKLEHCEEYKEEKGH-LNFLNRKLT 725 (792)
Q Consensus 676 ~~~~~~~~~~~L~~~~-~~f~~~~~~~l~~~~~~~v~~k~~v-~~~l~~~l~ 725 (792)
+..+ ..+...+ ..++..+..+|.+ ++..|++.++- +.-+.+++.
T Consensus 178 -~~~~----~~l~~~l~~~iip~l~~~l~D-~~~~VR~aA~~~l~~i~~~vG 223 (249)
T 2qk1_A 178 -KDGY----STLQRYLKDEVVPIVIQIVND-TQPAIRTIGFESFAILIKIFG 223 (249)
T ss_dssp -CSCS----HHHHHHHTTTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHC
T ss_pred -CCcc----hhHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhC
Confidence 1111 2355677 7888888888866 57778887764 555555554
No 7
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=17.84 E-value=3e+02 Score=30.02 Aligned_cols=77 Identities=9% Similarity=0.198 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhc-cCccchhhHhhHHHHHHHHHhhhccCcchhHHHHHHHHHHH
Q psy14013 266 DRLESLMTKRQELEENMDEIKNMLTYMFKSVFALQPLY-ASEDLKGKLELFTSKFKDRIVAMTLDKEYDVAVHAVRLVIS 344 (792)
Q Consensus 266 ~rle~L~~~i~e~~e~~~~i~~~i~~iF~~VFaL~~Ly-~~~d~~~~L~~Ft~RFk~RlVeM~~D~D~~V~v~AI~Ll~~ 344 (792)
.|++.|+..+.+++..-..+..+++.+.+ .|..-+ ...++-..+..+++-.+.||+.+=.-++..|. -|++|..
T Consensus 67 ~rIe~L~~~L~~~s~s~~~~~~y~~~~~~---~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~--~ir~Lq~ 141 (390)
T 1deq_A 67 SRINKLRDSLFNYQKNSKDSNTLTKNIVE---LMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ--RINLLQK 141 (390)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH---HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHH
Confidence 46677777777666666666665554444 222222 13455577778888888888777655666666 6666665
Q ss_pred HHh
Q psy14013 345 ILK 347 (792)
Q Consensus 345 i~~ 347 (792)
.++
T Consensus 142 ~l~ 144 (390)
T 1deq_A 142 NVR 144 (390)
T ss_pred HHH
Confidence 544
No 8
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=14.42 E-value=9.7e+02 Score=24.50 Aligned_cols=28 Identities=18% Similarity=0.385 Sum_probs=23.9
Q ss_pred HHHhhhccCcchhHHHHHHHHHHHHHhc
Q psy14013 321 DRIVAMTLDKEYDVAVHAVRLVISILKL 348 (792)
Q Consensus 321 ~RlVeM~~D~D~~V~v~AI~Ll~~i~~l 348 (792)
+-|..+.-|.|.+||-.|++.+..+++.
T Consensus 210 ~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 210 KTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp HHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4566667899999999999999999983
No 9
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=14.36 E-value=8.4e+02 Score=28.06 Aligned_cols=33 Identities=15% Similarity=0.132 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccC
Q psy14013 524 ELLKKLQKIVDKHNDTEVLETCAKTLETLCCEE 556 (792)
Q Consensus 524 ~LL~~I~~~f~~Hsd~~VL~~~a~al~~l~~~~ 556 (792)
.++..+-...+.+++.+|-.+|+.+|..||..+
T Consensus 75 ~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~ 107 (684)
T 4gmo_A 75 QVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE 107 (684)
T ss_dssp THHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 344444445577899999999999999999774
No 10
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=13.85 E-value=3.1e+02 Score=20.64 Aligned_cols=15 Identities=13% Similarity=0.118 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy14013 229 KLMTALVDVALVVSV 243 (792)
Q Consensus 229 kl~taLv~va~~l~~ 243 (792)
++++..+++..+++.
T Consensus 2 ~mQn~mydlvsel~~ 16 (43)
T 2pnv_A 2 SHMNIMYDMISDLNE 16 (43)
T ss_dssp ---CHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 345566666666553
Done!