Query psy14013
Match_columns 792
No_of_seqs 190 out of 276
Neff 6.0
Searched_HMMs 13730
Date Fri Aug 16 17:20:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14013.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14013hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1h2vc1 a.118.1.14 (C:29-290) 48.3 96 0.007 29.4 13.3 103 568-695 73-175 (262)
2 d1z8ua1 a.7.11.1 (A:2-91) Alph 25.4 20 0.0014 28.7 2.7 16 96-111 33-48 (90)
3 d1b3ua_ a.118.1.2 (A:) Constan 22.7 3.5E+02 0.026 26.8 15.9 55 174-233 417-471 (588)
4 d1g8qa_ a.135.1.1 (A:) CD81 ex 12.7 92 0.0067 25.0 4.2 20 115-134 31-50 (90)
5 d2ixna1 a.268.1.1 (A:3-299) Se 11.4 6E+02 0.043 24.2 12.2 127 115-242 17-175 (297)
6 d2vglb_ a.118.1.10 (B:) Adapti 9.1 1.4E+02 0.01 31.0 5.3 45 298-347 141-186 (579)
7 d1ivsa1 a.2.7.3 (A:797-862) Va 8.4 3.3E+02 0.024 19.7 5.9 52 240-291 8-64 (66)
8 d1l8ya_ a.21.1.1 (A:) Nucleola 8.3 1.1E+02 0.0083 23.6 3.0 22 100-121 16-37 (84)
9 d1j2oa1 g.39.1.3 (A:1-30) Rhom 7.3 33 0.0024 22.4 -0.6 14 125-138 3-16 (30)
10 d1xkpa1 a.243.1.3 (A:73-269) O 7.0 57 0.0042 30.0 0.7 35 96-133 137-171 (197)
No 1
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.28 E-value=96 Score=29.37 Aligned_cols=103 Identities=15% Similarity=0.180 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCChhHHHHHHHHHHHHHHHhccccCCCcchhhHHHHHHHHHhhCCCCCCCH
Q psy14013 568 RRTLIEKTIVDKYTESLDDWNNSLEAGVKPDDDETFNLVSSLKKIATFYSCHNMGQWNVWDTAYKTILEAQSNSPKAPPQ 647 (792)
Q Consensus 568 ~~eL~d~~l~~~~~~~l~~~~~l~~~~~~~~ed~~~~l~~~L~RL~~l~s~~dls~w~l~d~~~~iL~~~~~rg~~~l~~ 647 (792)
..++++ .++.+|+.++++ + + -.+....++=|+.|+.|+=++.-.+++-+..++....+. +.|.
T Consensus 73 g~~~l~-~~~~~f~~~l~~------~----~---~~~~~~llrFla~L~n~~Vv~~~~i~~ll~~ll~~~~e~---~~~~ 135 (262)
T d1h2vc1 73 GGEFVE-AMIRQLKESLKA------N----N---YNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEE---DVPQ 135 (262)
T ss_dssp HHHHHH-HHHHHHHHHHHT------T----C---HHHHHHHHHHHHHHHHTTSBCHHHHHHHHHHHHHGGGCS---SCCH
T ss_pred HHHHHH-HHHHHHHHHHHh------C----C---HHHHHHHHHHHHHHccCCCCcHhHHHHHHHHHHHHHhhc---cCCc
Confidence 456676 776677666553 1 1 233445566788888887777766666554555433332 3555
Q ss_pred HHHHHHHHHHHHHHhcccccchhhhhcCCCCchHHHHHHHHHHHHHHH
Q psy14013 648 EAVQYCMRACYFSLLWDLHHCEELAQSGAGTAVEDAVAETKGRLLRFM 695 (792)
Q Consensus 648 E~v~~al~~~~~~l~W~l~~l~~~~~~~~~~~~~~~~~~L~~~~~~f~ 695 (792)
.-...++.++..++-|-...+.+. ..++++++=...+.|+
T Consensus 136 ~~~d~~~~~vL~~LP~~g~~l~~~--------~~~~~~~ll~~i~~y~ 175 (262)
T d1h2vc1 136 VRRDWYVYAFLSSLPWVGKELYEK--------KDAEMDRIFANTESYL 175 (262)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHHHH
Confidence 555667788888888977666652 2355666666666654
No 2
>d1z8ua1 a.7.11.1 (A:2-91) Alpha-hemoglobin stabilizing protein AHSP {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.36 E-value=20 Score=28.69 Aligned_cols=16 Identities=19% Similarity=0.752 Sum_probs=13.6
Q ss_pred cccHHHHHHHHHHHHh
Q psy14013 96 QVRLIMLVDEWIEQYK 111 (792)
Q Consensus 96 ~~~~~~va~eWie~Y~ 111 (792)
..+|-.||.+|+.-|-
T Consensus 33 eedMvtvV~DWvn~Yi 48 (90)
T d1z8ua1 33 EEDMVTVVEDWMNFYI 48 (90)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5568899999999984
No 3
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.73 E-value=3.5e+02 Score=26.76 Aligned_cols=55 Identities=24% Similarity=0.301 Sum_probs=33.2
Q ss_pred hHHhhHHHHHHHHHHHhccCcccchhhHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHH
Q psy14013 174 KFRSNFCDFVAHLVKQCQYSIIYDQYLMDNVISLLTGLSDSQVRAFRHTATLAAMKLMTA 233 (792)
Q Consensus 174 ~Fr~n~~eF~~~LV~~~~~~iLyD~~Lm~~l~~wLt~lS~S~vR~FRHTATl~aLkl~ta 233 (792)
+.|....+.+..+...+... .|++.+++-+..|+ ..+..+.|.+|.-+.-.+...
T Consensus 417 ~~r~~~~~~l~~l~~~~~~~-~~~~~l~~~l~~~l----~D~~~~VR~~A~~~L~~l~~~ 471 (588)
T d1b3ua_ 417 RVRLAIIEYMPLLAGQLGVE-FFDEKLNSLCMAWL----VDHVYAIREAATSNLKKLVEK 471 (588)
T ss_dssp HHHHHHHHHHHHHHHHHCGG-GCCHHHHHHHHHGG----GCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcChH-hHHHHHHHHHHhhc----cCCchhHHHHHHHHHHHHHHH
Confidence 47777777777777655433 34555555555443 456678898876554444433
No 4
>d1g8qa_ a.135.1.1 (A:) CD81 extracellular domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.71 E-value=92 Score=25.02 Aligned_cols=20 Identities=10% Similarity=0.135 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhcCCCcc
Q psy14013 115 ESALLSLMQFFINGSGCRGK 134 (792)
Q Consensus 115 ~~Al~eLINfil~~cGc~~~ 134 (792)
..+.+..|..-|+|||-.+.
T Consensus 31 ~k~tLk~fH~~L~CCG~~~~ 50 (90)
T d1g8qa_ 31 AKAVVKTFHETLDCCGSSTL 50 (90)
T ss_dssp HHHHHHHHHHHHTCCSCTTC
T ss_pred HHHHHHHHHHHHccCCCCCc
Confidence 34578899999999998874
No 5
>d2ixna1 a.268.1.1 (A:3-299) Serine/threonine-protein phosphatase 2A regulatory subunit B', PTPA {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.35 E-value=6e+02 Score=24.18 Aligned_cols=127 Identities=14% Similarity=0.213 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHhcCCCcc--cCccccCCCchHHHHHHHHHHHhhccCccCccc-C------CccchhHHhhHHHHHHH
Q psy14013 115 ESALLSLMQFFINGSGCRGK--ITSNMANNMEHAAIIRKMTEEFDEESGEYPLIM-A------GQQWKKFRSNFCDFVAH 185 (792)
Q Consensus 115 ~~Al~eLINfil~~cGc~~~--It~~d~~d~d~~~ii~~l~e~f~e~s~eYPLi~-k------~k~~K~Fr~n~~eF~~~ 185 (792)
..|-.+++.||...+=+... ++.....-.+....|-++.+..+.-..++|.+. . .+.||.|.+.+.+=...
T Consensus 17 S~Ay~~i~~fI~~l~~sv~g~~~s~~~~~~s~~i~~l~~il~~l~~~i~e~Pp~~~~~~~RFGN~afR~w~~~l~~~~~~ 96 (297)
T d2ixna1 17 SPTRAHFTKFIIDLAESVKGHENSQYKEPISESINSMMNLLSQIKDITQKHPVIKDADSSRFGKVEFRDFYDEVSRNSRK 96 (297)
T ss_dssp SHHHHHHHHHHHHHHHTTTTCCTTCCCSSCCHHHHHHHHHHHHHHHHHTTCCCCC-----CCCCTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCccCCCccCCCCHHHHHHHHHHHHHHHHHHhCCCCCCCCcCcccCHHHHHHHHHHHHHHHH
Confidence 35789999999888766432 222222112222444444444444456677653 1 23455555555555555
Q ss_pred HHHHhccCcccc-------hhhHH----------------HHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy14013 186 LVKQCQYSIIYD-------QYLMD----------------NVISLLTGLSDSQVRAFRHTATLAAMKLMTALVDVALVVS 242 (792)
Q Consensus 186 LV~~~~~~iLyD-------~~Lm~----------------~l~~wLt~lS~S~vR~FRHTATl~aLkl~taLv~va~~l~ 242 (792)
|+..+-.. .++ .||.+ +++.||.+|-...+=........++|.+...-.+++..|.
T Consensus 97 ll~~~l~~-~~~~~i~EL~~Yl~~SFGn~tRiDYGTGHEL~Fl~fL~~L~~~gil~~~~d~~a~vL~vF~rYl~l~R~Lq 175 (297)
T d2ixna1 97 ILRSEFPS-LTDEQLEQLSIYLDESWGNKRRIDYGSGHELNFMCLLYGLYSYGIFNLSNDSTNLVLKVFIEYLKIMRILE 175 (297)
T ss_dssp HHHHHCTT-CCHHHHHHHHHHHHTSSCBTTTTEECHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHcCc-chhhhHHHHHHHHHhccCCCccccCCchHHHHHHHHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHH
Confidence 55543111 111 11111 4678888888777655555566677888888888886654
No 6
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.11 E-value=1.4e+02 Score=31.00 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=34.6
Q ss_pred hhhhhcc-CccchhhHhhHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHh
Q psy14013 298 ALQPLYA-SEDLKGKLELFTSKFKDRIVAMTLDKEYDVAVHAVRLVISILK 347 (792)
Q Consensus 298 aL~~Ly~-~~d~~~~L~~Ft~RFk~RlVeM~~D~D~~V~v~AI~Ll~~i~~ 347 (792)
++.+||. +++... ...|.+++.+|..|.|+.|+..|+.++..|.+
T Consensus 141 ~l~kl~~~~p~~~~-----~~~~~~~L~~lL~D~n~~V~~~Al~~L~~I~~ 186 (579)
T d2vglb_ 141 CVAKLHDINAQMVE-----DQGFLDSLRDLIADSNPMVVANAVAALSEISE 186 (579)
T ss_dssp HHHHHHHSSCCCHH-----HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccChhhhh-----hhhHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 7778875 344322 24677888999999999999999999987765
No 7
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=8.42 E-value=3.3e+02 Score=19.74 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=32.9
Q ss_pred HHHHhHhhHHHHHHHHHhhccc-----chhhhHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy14013 240 VVSVNLDNTQRQYESERQKTRD-----KRASDRLESLMTKRQELEENMDEIKNMLTY 291 (792)
Q Consensus 240 ~l~~~l~~~qrQleaEkkK~~~-----~r~~~rle~L~~~i~e~~e~~~~i~~~i~~ 291 (792)
.|...++..+.+++.-.+|-.. +...+-++.-..++.+++...+.|...+..
T Consensus 8 RL~K~l~kl~~~i~~~~~kL~N~~F~~kAP~~Vv~~~k~kl~~~~~~~~~l~~~l~~ 64 (66)
T d1ivsa1 8 RQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREALSQ 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTHHHHSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCChHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666655555432 112456777778888888888887776653
No 8
>d1l8ya_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.33 E-value=1.1e+02 Score=23.57 Aligned_cols=22 Identities=14% Similarity=0.478 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhhChHHHHHHH
Q psy14013 100 IMLVDEWIEQYKSHKESALLSL 121 (792)
Q Consensus 100 ~~va~eWie~Y~~d~~~Al~eL 121 (792)
|+|+.+.+.+|+.|+..|...+
T Consensus 16 qsvIgdYlA~fk~DR~KaqkaM 37 (84)
T d1l8ya_ 16 QSVIGDYLARFKNDRVKALKAM 37 (84)
T ss_dssp HHHHHHHHHHTTSTHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHH
Confidence 6899999999999999887654
No 9
>d1j2oa1 g.39.1.3 (A:1-30) Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.29 E-value=33 Score=22.38 Aligned_cols=14 Identities=21% Similarity=0.639 Sum_probs=10.7
Q ss_pred HHHhcCCCcccCcc
Q psy14013 125 FINGSGCRGKITSN 138 (792)
Q Consensus 125 il~~cGc~~~It~~ 138 (792)
++.|+||...|.+-
T Consensus 3 ~~~CaGC~~~I~DR 16 (30)
T d1j2oa1 3 LLTCGGCQQNIGDR 16 (30)
T ss_dssp CBCBSSSCSCBCSS
T ss_pred CcccCCCCCcchHH
Confidence 35799999888764
No 10
>d1xkpa1 a.243.1.3 (A:73-269) Outer membrane protein yopN (LcrE) {Yersinia pestis [TaxId: 632]}
Probab=6.98 E-value=57 Score=30.01 Aligned_cols=35 Identities=6% Similarity=0.111 Sum_probs=28.5
Q ss_pred cccHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcCCCc
Q psy14013 96 QVRLIMLVDEWIEQYKSHKESALLSLMQFFINGSGCRG 133 (792)
Q Consensus 96 ~~~~~~va~eWie~Y~~d~~~Al~eLINfil~~cGc~~ 133 (792)
..++..+-++|+++|...+ +...+.|++++-||+.
T Consensus 137 ~~~~~~~y~~~~~~~g~~~---~~~~l~fl~rALa~DL 171 (197)
T d1xkpa1 137 YQGIYAIWSDLQKRFPNGD---IDSVILFLQKALSADL 171 (197)
T ss_dssp CCCHHHHHHHHHHHCTTSC---HHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhChHH---HHHHHHHHHHHHHHHH
Confidence 6678899999999997543 5567889999999974
Done!