RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14013
(792 letters)
>gnl|CDD|219877 pfam08514, STAG, STAG domain. STAG domain proteins are subunits of
cohesin complex - a protein complex required for sister
chromatid cohesion in eukaryotes. The STAG domain is
present in Schizosaccharomyces pombe mitotic cohesin
Psc3, and the meiosis specific cohesin Rec11. Many
organisms express a meiosis-specific STAG protein, for
example, mice and humans have a meiosis specific variant
called STAG3, although budding yeast does not have a
meiosis specific version.
Length = 118
Score = 179 bits (457), Expect = 2e-53
Identities = 71/120 (59%), Positives = 95/120 (79%), Gaps = 2/120 (1%)
Query: 158 EESGEYPLIMAGQQWKKFRSNFCDFVAHLVKQCQYSIIYDQYLMDNVISLLTGLSDSQVR 217
E+SG+YPL+ G + KKFR N C+F++ LV QCQYS++YD LMDN+IS LT LS SQVR
Sbjct: 1 EDSGDYPLVSKGPKLKKFRENLCEFLSTLVIQCQYSLLYDDNLMDNLISWLTALSSSQVR 60
Query: 218 AFRHTATLAAMKLMTALVDVALVVSVNLDNTQRQYESERQKTRDKRASDRLESLMTKRQE 277
FRHTATL A+KLMTAL +VAL +S + + TQ+Q E+E++K+RD RA R++SL +KR+E
Sbjct: 61 PFRHTATLVALKLMTALCNVALELSNSKETTQKQLEAEKKKSRDNRA--RVDSLNSKRKE 118
>gnl|CDD|227824 COG5537, IRR1, Cohesin [Cell division and chromosome partitioning].
Length = 740
Score = 47.2 bits (112), Expect = 3e-05
Identities = 53/318 (16%), Positives = 99/318 (31%), Gaps = 55/318 (17%)
Query: 89 DLTSTPYQVRLIMLVDEWIEQYKSHKESALLSLMQFFINGSGCRGKITSNMANNMEHA-A 147
V +L W E Y + L SL+ F ++ GC ++ + + +
Sbjct: 87 FYELLDEDVIREILSVHWFEDYMKNLSKFLNSLINFDLSCCGCLTRVGNFDVQDYDSTYE 146
Query: 148 IIRKMTEEFDEESG-EYPLIMAGQQWK-KFRSNFCDFVAHLVKQ---CQYSI---IYDQY 199
+ ++ G E L + + +K +FR + DF + ++ + I++
Sbjct: 147 TLGQIQLSILRGKGFEVVLYLYDENFKVRFRDVYQDFNIRALLVEFVSEWVVSVGIFNSS 206
Query: 200 LMDNVISLLTGLSDSQVRAFRHTATLAAMKLMTALVDVALVVSVNLDNTQRQYESERQKT 259
+ I +S+S VR FRHTAT + L A +S + +
Sbjct: 207 CYLDYIGWALSMSNSTVRCFRHTATSCCRLIQKKLCVQAFSLSEKKSRMNELALYDLNPS 266
Query: 260 ------------------RDKRASDRLESLMTKRQELEENMDEIKNMLTYMFKSVF---- 297
D R+ M+ R D I + Y K +
Sbjct: 267 LIRDEIKDICDSVFVSRYIDVDDVIRVLCSMSLR-------DWIGLVPDYFRKILGLRYN 319
Query: 298 -----------------ALQPLYASEDLKGKLELFTSKFKDRIVAMTLDKEYDVAVHAVR 340
L L + + F +FKDRI+ V + +++
Sbjct: 320 GWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRILEFLRTDSDCVRICSIK 379
Query: 341 LVISILKLFVPDDEFANV 358
+ + L V +
Sbjct: 380 SLCYLRILGVLSSSEILI 397
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 35.9 bits (83), Expect = 0.072
Identities = 16/106 (15%), Positives = 33/106 (31%), Gaps = 14/106 (13%)
Query: 220 RHTATLAAMK--LMTALVDVALV---------VSVNLDNTQRQYESERQKTRDKRASDRL 268
TA M ++ A + A V L Q++ + + + D+
Sbjct: 4 FLTAVKTRMLGTILLASLLSAAVLAAAFSAAADDKQLKQIQKEIA--ALEKKIREQQDQR 61
Query: 269 ESLMTKRQELEENMDEIKNMLTYMFKSVFAL-QPLYASEDLKGKLE 313
L + + LE + ++ L + L + + LE
Sbjct: 62 AKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107
>gnl|CDD|224494 COG1578, COG1578, Uncharacterized conserved protein [Function
unknown].
Length = 285
Score = 35.0 bits (81), Expect = 0.13
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 14/98 (14%)
Query: 471 DDKQRLTEHFIKVLPQLLDKYVADHDKLTNLLSLP---QYFDLNIYTTSRREKDLDELLK 527
+ K+R E +KVLP++ + + L + L D + S DL+E ++
Sbjct: 73 EYKRRANEIALKVLPKVRENIEDTPEDLKTAVKLAIVGNVIDFGVLGFS--PFDLEEEVE 130
Query: 528 KLQKIVDKHNDTEVLETCAKTLETLCCEENASIFTRCD 565
KL +D+ K LE L +NAS+ D
Sbjct: 131 KLLDAELYIDDSP------KLLELL---KNASVLYLTD 159
>gnl|CDD|226654 COG4191, COG4191, Signal transduction histidine kinase regulating
C4-dicarboxylate transport system [Signal transduction
mechanisms].
Length = 603
Score = 34.2 bits (79), Expect = 0.29
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 255 ERQKTRDKRASDRLESLMTKRQELEENMDEIKNML-TYMFKSVFALQPLYASEDLKGKLE 313
ER +T + A + LE + L E M I L ++ KS A P+ E ++G LE
Sbjct: 414 ERGRT--EEARENLERI----SALTERMAAITAHLKSFARKSRDAAGPVSLREAIEGALE 467
Query: 314 LFTSKFKDRIVAMTLDK-EYDVAVHA--VRL 341
L + + V + LD + + V A +RL
Sbjct: 468 LLRGRLRAAGVELELDLPDAPLWVMANEIRL 498
>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional.
Length = 754
Score = 33.9 bits (77), Expect = 0.37
Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 14/121 (11%)
Query: 449 DAPVGRGPNRRIASMKEMKQVQDDKQRLTEHFIKV------LPQLLDKYVADHDKLTNLL 502
+AP NR A + ++++K L + + +P+ + + D++ L
Sbjct: 156 EAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLTTIPACIPEQITTLILDNN---ELK 212
Query: 503 SLPQYFDLNIYTTSRREKDLDELLKKLQKIV-----DKHNDTEVLETCAKTLETLCCEEN 557
SLP+ NI T L + L + + TE+ E L++L N
Sbjct: 213 SLPENLQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRITELPERLPSALQSLDLFHN 272
Query: 558 A 558
Sbjct: 273 K 273
>gnl|CDD|219791 pfam08317, Spc7, Spc7 kinetochore protein. This domain is found in
cell division proteins which are required for
kinetochore-spindle association.
Length = 321
Score = 31.2 bits (71), Expect = 2.0
Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 464 KEMKQVQDDKQRLTEHFIK---VLPQLLDKYVADHDKLTNLLSLPQYFDLNIYTTSRREK 520
+ ++ ++ D++ L + + P+L K A +++ +L L +LN+ EK
Sbjct: 154 ENLEGMKRDEELLNKDLNLINSIKPKLRKKLQALKEEIASLRQLAD--ELNLCDPLELEK 211
Query: 521 DLDELLKKLQKIVDKHNDTEVLETCAKTLET 551
EL KI +K E L+ + L
Sbjct: 212 ARQELRSLSVKISEKRKQLEELQQELQELTI 242
>gnl|CDD|201520 pfam00945, Rhabdo_ncap, Rhabdovirus nucleocapsid protein. The
Nucleocapsid (N) Protein is said to have a "tight"
structure. The carboxyl end of the N-terminal domain
possesses an RNA binding domain. Sequence alignments
show 2 regions of reasonable conservation, approx.
64-103 and 201-329. A whole functional protein is
required for encapsidation to take place.
Length = 406
Score = 31.2 bits (71), Expect = 2.3
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 715 GHLNFLNRKLTAPLPSSRQKN----EDWQPLELYKTSLLHGESDSVSAATKKNYSRKNKK 770
H +FL + + L S R +N +D EL +LL + A ++ + R KK
Sbjct: 287 PHFHFLIHLVGSLLGSERSRNARVIDDIAYHELTVAALLLSYAFGSKATLEQRFFRDEKK 346
Query: 771 DMEEEHEELDIDNLSLDDNDF 791
E ++ D + L D+
Sbjct: 347 YTEYRDDDGDNTDAPLADDGD 367
>gnl|CDD|173415 PTZ00124, PTZ00124, adenosine deaminase; Provisional.
Length = 362
Score = 30.2 bits (68), Expect = 4.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 510 LNIYTTSRREKDLDELLKKLQKIVDKHNDTEVLETCAK 547
L+ Y ++ K L E ++K ++ D ND EV+E AK
Sbjct: 72 LDYYLFAKGGKSLGEFVEKAIRVADIFNDYEVIEDLAK 109
>gnl|CDD|132310 TIGR03266, methan_mark_1, putative methanogenesis marker protein 1.
Members of this protein family represent a distinct
clade among the larger set of proteins that belong to
families TIGR00702 and pfam02624. Proteins from this
clade are found in genome sequence if and only if the
species sequenced is one of the methanogens. All
methanogens belong to the archaea; some but not all of
those sequenced are hyperthermophiles. This protein
family was detected by the method of partial
phylogenetic profiling (see Haft, et al., 2006).
Length = 376
Score = 30.1 bits (68), Expect = 5.1
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 14/91 (15%)
Query: 266 DRLESLMTKRQELEE--NMDEIKNMLTYMFKSVFALQPLYASEDLKGKLELFTSKFKDRI 323
DR++ L E EE N+D++ ++ T FK ED++ LE D++
Sbjct: 292 DRMKRLNRHWFEPEETINIDDMPDLSTRSFK-----------EDIEIILEKLKEAGLDKV 340
Query: 324 VAMTLDKEYDVAVHAVRLVISILKLFVPDDE 354
+ + L +E +V V VR++I ++L+ D +
Sbjct: 341 IVVDLTRE-EVGVPVVRVIIPGMELYTIDRD 370
>gnl|CDD|176379 cd01784, rasfadin_RA, Ubiquitin-like domain of Rasfadin.
rasfadin_RA Rasfadin (RASSF2) belongs to a family of
Ras effectors/tumor suppressors that includes RASSF1 and
NORE1. RASSF2 binds directly to K-Ras in a
GTP-dependent manner via its RA (RAS-associated) domain.
RASSF2 promotes apoptosis and cell cycle arrest and is
frequently down-regulated in lung tumor cell lines.
Length = 87
Score = 27.9 bits (62), Expect = 5.2
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
Query: 339 VRLVISILKLFVPDDEFA--NVHTKGGKRRLKNT--PLIRDLVQ 378
++L+++ K+ +EFA VHT G KR+LK T PLI ++Q
Sbjct: 29 LKLLLNKFKIENSAEEFALYIVHTSGEKRKLKATDYPLIARVLQ 72
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 29.9 bits (68), Expect = 5.4
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 266 DRLESLMTKRQELEENMDEIKNMLTYMFKSVFALQPLYASEDLKGKLELFTSKFKDRIVA 325
+ L+ L + +ELEE +++IK +L + K P E L+ LE K + +
Sbjct: 334 EELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKE-KLSEELEE 392
Query: 326 MTLDKEY 332
+ + +
Sbjct: 393 LEEELKE 399
>gnl|CDD|225918 COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General
function prediction only].
Length = 978
Score = 30.1 bits (68), Expect = 6.0
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 706 HCEEYKEEKGHLNFLNRKLTAPLPSSRQKNEDWQP 740
+ YK L + +PLPS +N P
Sbjct: 924 NTPAYKRTPVKLEPSEGRGKSPLPSDNPRNYKRHP 958
>gnl|CDD|226702 COG4251, COG4251, Bacteriophytochrome (light-regulated signal
transduction histidine kinase) [Signal transduction
mechanisms].
Length = 750
Score = 29.7 bits (67), Expect = 6.6
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 462 SMKEMKQVQDDKQRLTEHFIKVLPQLLDKYVADHDKLTNLLSLPQ 506
S E + D + +LTEH ++L +Y+A + L Q
Sbjct: 312 SALEQSEDADYRVQLTEHHARLL-----RYMAHAADFVDGLIDHQ 351
>gnl|CDD|234402 TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC,
C-terminal domain. This model describes the C-terminal
domain, or longer subunit, of the Firmicutes type VII
secretion protein EssC. This protein (homologous to EccC
in Actinobacteria) and the WXG100 target proteins are
the only homologous parts of type VII secretion between
Firmicutes and Actinobacteria [Protein fate, Protein and
peptide secretion and trafficking].
Length = 1296
Score = 29.6 bits (67), Expect = 9.9
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 15/74 (20%)
Query: 226 AAMKLMTALVDVALVVSVNLDNTQRQYESERQKTR---DKRASDRLESLMTKRQELEENM 282
AM L+T + Y E++K + +KR L KR+EL+
Sbjct: 68 IAMSLVTIIFST------------TTYFREKKKYKKDVEKRNRSYRLYLDKKRKELQALS 115
Query: 283 DEIKNMLTYMFKSV 296
++ +++L Y SV
Sbjct: 116 EKQRHVLHYHNPSV 129
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.132 0.385
Gapped
Lambda K H
0.267 0.0905 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 39,911,650
Number of extensions: 3906141
Number of successful extensions: 4599
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4595
Number of HSP's successfully gapped: 37
Length of query: 792
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 687
Effective length of database: 6,280,432
Effective search space: 4314656784
Effective search space used: 4314656784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (27.7 bits)