RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14013
(792 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 74.9 bits (183), Expect = 8e-14
Identities = 84/562 (14%), Positives = 157/562 (27%), Gaps = 165/562 (29%)
Query: 303 YASEDLKGKLELFTSKFKDRIVAMTLDKEYDVAVHAVRLVISILKLFVPDDEFANV---- 358
Y +D+ L +F F +D + V + K + +E ++
Sbjct: 16 YQYKDI---LSVFEDAFV---------DNFDC-----KDVQDMPKSILSKEEIDHIIMSK 58
Query: 359 HTKGGKRRLKNTPLIR--DLVQFFIESELHEHGAYLVDSLIESNEMMKDWECMTDLLLEE 416
G RL T L + ++VQ F+E L + +L+ + + MT + +E+
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ---RQPSMMTRMYIEQ 115
Query: 417 PNPKYNEEPLDDRQETSLIELMVCCVRQAATGDAPVGRGPNRRIASMKEM-KQV------ 469
+ YN+ + + S ++ +RQA P N I + K
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQ-PYLKLRQALLELRP---AKNVLIDGVLGSGKTWVALDVC 171
Query: 470 QDDKQRLTEHF----IKVLPQLLDKYVADHDKLTNLLSLPQYFDLN-------IYTTSRR 518
K + F + + + L L L D N R
Sbjct: 172 LSYKVQCKMDFKIFWLNL-----KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 519 EKDLDELLKKLQK---------IVDKHNDTEVLET----CAKTLETLCCEENASIFTRCD 565
+ L++L K ++ + + C K L T +
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC-KILLT---TRFKQVTDFLS 282
Query: 566 VQRRTLIEKTIVDKYTESLDDWNNSLE-----AGVKPDD-----DETFNLVSSLKKIATF 615
T I +D ++ +L + +P D T S+ IA
Sbjct: 283 AATTTHIS---LDHHSMTLTP-DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI--IAES 336
Query: 616 YSCHNMGQWNVWDT-AYKTILEAQSNSPKA-PPQEAVQYCMRACY-----F--------- 659
+ W+ W + +S P E R + F
Sbjct: 337 IR-DGLATWDNWKHVNCDKLTTIIESSLNVLEPAE-----YRKMFDRLSVFPPSAHIPTI 390
Query: 660 --SLLWD------------------------------LH--HCEELAQSGAGTAVEDAVA 685
SL+W + + E + A+ ++
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 686 ETKGRLLRFMDSMEE----------------MLKLEHCEEYKE-EKGHLN--FLNRKL-- 724
+ + + DS + + +EH E L+ FL +K+
Sbjct: 451 D-HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509
Query: 725 -TAPLPSSRQKNEDWQPLELYK 745
+ +S Q L+ YK
Sbjct: 510 DSTAWNASGSILNTLQQLKFYK 531
Score = 72.6 bits (177), Expect = 3e-13
Identities = 77/637 (12%), Positives = 177/637 (27%), Gaps = 215/637 (33%)
Query: 11 MDDPIPPEYDTNPMTPMTEGGDIQEPFTPYTPYSNHAQTPLHNPIH-FRNREITIIVHNI 69
+++ + Y M+P+ + ++P Y + L+N F ++ + +
Sbjct: 83 VEEVLRINYKF-LMSPIKT--EQRQPSMMTRMY-IEQRDRLYNDNQVFAKYNVSRLQPYL 138
Query: 70 FVRQNLFQ----------------KKTIAATHYQVD--LTSTPYQVRLIMLVDEWIEQYK 111
+RQ L + K +A +++ W+
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-------WLNLKN 191
Query: 112 SHKESALLSLMQFFINGSGCRGKITSNMANNMEHAAIIRKMTEEFDEESGEYPLIMAGQQ 171
+ +L ++Q + +I N + +H++ I+ E
Sbjct: 192 CNSPETVLEMLQKLLY------QIDPNWTSRSDHSSNIKLRIHSIQAE------------ 233
Query: 172 WKKFRSNFCDFVAHLVKQCQYS---IIYDQYLMDNVISLLTGLSDSQV-RAFRHTATLAA 227
+ L+K Y ++ + NV +++ AF + +
Sbjct: 234 -----------LRRLLKSKPYENCLLV-----LLNV-------QNAKAWNAFNLSCKI-- 268
Query: 228 MKLMTALVDVALVVSVNLDNTQRQYESERQKTRDKRASDRLESLMTKRQELEENMDEIKN 287
L+T TR K+ +D L + T L+ +
Sbjct: 269 --LLT--------------------------TRFKQVTDFLSAATTTHISLDHHSM---- 296
Query: 288 MLTYMFKSVFALQPLYASEDLKGKLELFTSKFKDRIVAMTLDKEYDVAVHAVRLVISILK 347
L E L K+ + + +SI+
Sbjct: 297 -------------TLTPDE----VKSLL-LKY----LDCRPQDLPREVLTTNPRRLSIIA 334
Query: 348 LFVPD-----DEFANVHTKGGKRRLKNTPLIRDLVQFFIESELHEHGAYLV----DSLIE 398
+ D D + +V+ +L I + +E + L + I
Sbjct: 335 ESIRDGLATWDNWKHVNCD----KLTTI--IESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 399 SNEMMKDWECMTDLLLEEPNPKYNEEPLDDRQETSLIELMVCCVRQAATGDAPVGRGPNR 458
+ + W + + ++ + SL+E + P
Sbjct: 389 TILLSLIWFDVIK---SDV-----MVVVNKLHKYSLVE-----------------KQPKE 423
Query: 459 RIAS-----MKEMKQVQDDKQ---RLTEHFI--------KVLPQLLDKYV---------- 492
S ++ +++++ + +H+ ++P LD+Y
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 493 ADHDKLTNLLSLPQYFDLN------IYTTSRREK--DLDELLKKLQK----IVDKHNDTE 540
+H + L + + D + ++ + L++L+ I D E
Sbjct: 484 IEHPERMTLFRM-VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Query: 541 VLETCAKTLET--LCCEENASIFTRCDVQRRTLIEKT 575
L + EEN D+ R L+ +
Sbjct: 543 RLV---NAILDFLPKIEENLICSKYTDLLRIALMAED 576
Score = 47.9 bits (113), Expect = 1e-05
Identities = 53/354 (14%), Positives = 101/354 (28%), Gaps = 94/354 (26%)
Query: 465 EMKQVQDDKQRLTEHFIKVLPQLLDKYVADHDKLTNLLSLPQYFDLNIYTTSRREKDLDE 524
E + Q + +L D +V + D ++ +P+ +I + +++D
Sbjct: 10 ETGEHQ-------YQYKDILSVFEDAFVDNFD-CKDVQDMPK----SILSK----EEIDH 53
Query: 525 LLKKLQKIVDKHNDTEVLETCAKTLETLCCEENASI-------------FTRCDVQRRTL 571
++ K + L + TL ++ + F ++
Sbjct: 54 IIMS------KDAVSGTL----RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103
Query: 572 IEKTIVDKYTESLDDWNNSLEAGVK---PDDDETFNLVSSLKKI--ATFYSCHNM---GQ 623
+ Y E D N + K L +L ++ A + G
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG- 162
Query: 624 WNVWDTAYKTILEAQSNSPKAPPQEAVQYCMRACYFSLLW-DLHHCEELAQSGAGTAVED 682
KT + VQ M F + W +L +C +
Sbjct: 163 --------KTWVALDVCL-----SYKVQCKM---DFKIFWLNLKNCNS----------PE 196
Query: 683 AVAETKGRLLRFMDSMEEMLKLEHCEEYKEEKGHLNFLNRKLTAPLPSSRQKN------- 735
V E +LL +D + K ++ + +L L S +N
Sbjct: 197 TVLEMLQKLLYQIDPNWT----SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 736 ----EDWQPLELYKTSLL----HGESDSVSAATKKNYSRKNKKDMEEEHEELDI 781
+ W L LL +D +SAAT + S + E +
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.7 bits (126), Expect = 5e-07
Identities = 77/543 (14%), Positives = 155/543 (28%), Gaps = 163/543 (30%)
Query: 25 TPMTEGGDIQEPFTP------YTPYSNHAQTPLHNPIHFRNREITIIVHNIFVRQNLFQK 78
P EP TP + Y + P F ++ + F L
Sbjct: 43 EPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVG-QFD--QVLNLCLTEFENCYLEGN 99
Query: 79 K--TIAATHYQVDLTSTPYQVRLIMLVDEWIEQY-----------KSHKESALL------ 119
+AA + +T + + E I+ Y SAL
Sbjct: 100 DIHALAA-KLLQENDTTLVKTK------ELIKNYITARIMAKRPFDKKSNSALFRAVGEG 152
Query: 120 --SLMQFFINGSGCRGKITSNMANNMEH----------------AAIIRKMTEEFDEESG 161
L+ F G G N + +I+ E E
Sbjct: 153 NAQLVAIF-GGQG-----------NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIR 200
Query: 162 E-------YPLIMAGQQWKKFRSNF--CDFVAH---------LVKQCQYSIIYDQYLMDN 203
+ + +W + SN D++ +++ Y
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYV---------- 250
Query: 204 VISLLTGLSDSQVRAFRHTATLAAMKLMTALVDVALVVSVN--LDNTQRQYE------SE 255
V + L G + ++R++ AT + L+TA+ +A S + ++
Sbjct: 251 VTAKLLGFTPGELRSYLKGATGHSQGLVTAVA-IAETDSWESFFVSVRKAITVLFFIGVR 309
Query: 256 RQKTRDKRASDRLESLMTKRQELEENMDEIKNMLTYMFKSVFALQPLYASEDLKGKLELF 315
+ + L + ++ EN + + + M S+ L E ++ +
Sbjct: 310 CYEAYPNTS---LPPSIL--EDSLENNEGVP---SPML-SISNLTQ----EQVQDYVNKT 356
Query: 316 -TSKFKDRIVAMTL---DKEYDVAVHA---VRLVISILKLFVPDDEFANVHTKGGKRRLK 368
+ + V ++L K V+ L +++ K P + +R+LK
Sbjct: 357 NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS-RIPFSERKLK 415
Query: 369 NTPLIRDLVQF------FIESELHEHGAYLVD--SLIESNEMMKDWECM-TDLLLEEPNP 419
+ +F F H LV LI + + + D+ + P
Sbjct: 416 FS------NRFLPVASPF-------HSHLLVPASDLINKDLVKNNVSFNAKDIQI----P 458
Query: 420 KYNEEPLDDRQETS------LIELMVC-CVR-QAATGDAPV-----GRGPNRRIASM-KE 465
Y+ D + S +++ ++ V+ + T G G + +
Sbjct: 459 VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHR 518
Query: 466 MKQ 468
K
Sbjct: 519 NKD 521
Score = 52.7 bits (126), Expect = 5e-07
Identities = 85/503 (16%), Positives = 158/503 (31%), Gaps = 169/503 (33%)
Query: 144 EHAAIIRKMTEEF---DEESGEYPLIMAGQQWKKFRSNFCDFVAHLV---KQCQYSIIY- 196
+ I+ + TE F DE + L+ F +V+ LV K Q+ +
Sbjct: 36 QFNKILPEPTEGFAADDEPTTPAELV----------GKFLGYVSSLVEPSKVGQFDQVLN 85
Query: 197 -------DQYLMDNVI-SLLTGLSDSQ----------VRAFRHTATLAAMKLMTALVDVA 238
+ YL N I +L L ++ + TA + A + + A
Sbjct: 86 LCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY-ITARIMAKRPFDKKSNSA 144
Query: 239 LVVSVN-------------------LDNTQRQYESERQKTRD--KRASDRLESLMTKRQE 277
L +V + + Y++ D K +++ L L+ +
Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLD 204
Query: 278 LE----ENMDEIKNMLT---------YMFKSVFALQPL--------YAS---------ED 307
E + ++ I L Y+ + PL Y +
Sbjct: 205 AEKVFTQGLN-ILEWLENPSNTPDKDYLLSIPISC-PLIGVIQLAHYVVTAKLLGFTPGE 262
Query: 308 LKGKLELFTSKFKDRIVA------MTLDKEYDVAVHAVRLVISILKLFVPDDEFANVHTK 361
L+ L+ T + + A + + + A+ ++ I
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI---------------- 306
Query: 362 GGKRRLKNTPLIRDLVQFFIESELHEHGAYLVDSLIESNE-----MM--KDWECMTDLLL 414
G R + P + + E DS +E+NE M+ + +T +
Sbjct: 307 -GVRCYEAYP------NTSLPPSILE------DS-LENNEGVPSPMLSISN---LTQEQV 349
Query: 415 EEPNPKYNEE-PLDDRQETSLI---ELMVCCVRQAATGDAPVGRGPN---RRIASMKEMK 467
++ K N P + E SL+ + +V +G G N R+ + +
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLVNGAKNLVV------SGPPQSLYGLNLTLRKAKAPSGLD 403
Query: 468 QVQ----DDKQRLTEHFIKVLP-------QLLDKYVA--DHDKLTNLLSLPQYFDLNI-- 512
Q + + K + + F LP LL + D + N +S D+ I
Sbjct: 404 QSRIPFSERKLKFSNRF---LPVASPFHSHLLVPASDLINKDLVKNNVSFNAK-DIQIPV 459
Query: 513 YTTSRREKDLDELLKKL-QKIVD 534
Y T DL L + ++IVD
Sbjct: 460 YDT-FDGSDLRVLSGSISERIVD 481
Score = 51.2 bits (122), Expect = 1e-06
Identities = 73/414 (17%), Positives = 126/414 (30%), Gaps = 159/414 (38%)
Query: 474 QRLTEHFIKVLPQLLDKYVADHDKLTNLLSLPQYFDLNIYTTSRREKD----LDELLKK- 528
+L E F K+LP+ + + AD D+ T L F L Y +S E D++L
Sbjct: 31 SQLQEQFNKILPEPTEGFAAD-DEPTTPAELVGKF-LG-YVSSLVEPSKVGQFDQVLNLC 87
Query: 529 LQKIVD---KHNDTEVLETCAKTLETLCCEENASIFTRCDVQR-----RTLIEKTIVDKY 580
L + + + ND + A L E + ++ ++ + R + ++ DK
Sbjct: 88 LTEFENCYLEGND---IHALAAKLLQ---ENDTTLVKTKELIKNYITARIMAKRPF-DKK 140
Query: 581 TESLDDWNNSLEAG-VK----------PDD--DE------TF----------------NL 605
+ S ++ G + DD +E T+ L
Sbjct: 141 SNSA--LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSEL 198
Query: 606 VSSLKKIATFYSCH--NMGQWNVWDTAYKTILEAQSNSPK------AP---P-----QEA 649
+ + ++ N+ +W LE SN+P P P Q
Sbjct: 199 IRTTLDAEKVFT-QGLNILEW----------LENPSNTPDKDYLLSIPISCPLIGVIQ-L 246
Query: 650 VQYCMRACYFSLLWDLHHCEELAQ--SGAGTAVED-----AVAETKG---------RLLR 693
Y L EL GA + A+AET + +
Sbjct: 247 AHYV-VTAK---LLGFTP-GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT 301
Query: 694 FM----------------------DSMEE-------MLKLEHCEEYKEEKGHLNFLNRKL 724
+ DS+E ML + + + + + ++N N
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD-YVNKTNSH- 359
Query: 725 TAPLPSSRQ-----KNEDWQ------PLELYKTSL-LHGESDSVSAATKKNYSR 766
LP+ +Q N P LY +L L A + + SR
Sbjct: 360 ---LPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR----KAKAPSGLDQSR 406
Score = 48.9 bits (116), Expect = 8e-06
Identities = 48/285 (16%), Positives = 94/285 (32%), Gaps = 101/285 (35%)
Query: 51 LHNP----IHF---RNREITIIVHNIFVRQNLFQKKTIAATHYQVDLTSTPYQVRLIMLV 103
++NP IHF + + I R+N +A ++ + ++ +
Sbjct: 1666 INNPVNLTIHFGGEKGKRI---------RENY------SAMIFETIVDGKLKTEKIFKEI 1710
Query: 104 DEWIEQYKSHKESALLSLMQFFINGSGCRGKITSN-----MANNMEHAAIIRKMTEE--F 156
+E Y E LLS T ME A + +
Sbjct: 1711 NEHSTSYTFRSEKGLLSA--------------TQFTQPALTL--ME-KAAFEDLKSKGLI 1753
Query: 157 DEES-------GEYP-LI-MAGQQWKKFRSNFCDF--VAHLVKQ----CQYSIIYDQYLM 201
++ GEY L +A + +V Q ++ D+
Sbjct: 1754 PADATFAGHSLGEYAALASLAD---------VMSIESLVEVVFYRGMTMQVAVPRDELGR 1804
Query: 202 DNVISLLTGLSDSQVRAFRHTATLAAMKLMTALV--DVALVVS-VNLDNTQ-RQYESERQ 257
N + ++ +V A + + A++ + V +V VN N + +QY
Sbjct: 1805 SNY--GMIAINPGRVAA---SFSQEALQYVVERVGKRTGWLVEIVN-YNVENQQY----- 1853
Query: 258 KTR----DKRASDRLESLMT--KRQ-----ELEENM--DEIKNML 289
D RA D + +++ K Q EL++++ +E++ L
Sbjct: 1854 ---VAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 45.4 bits (107), Expect = 7e-05
Identities = 78/588 (13%), Positives = 163/588 (27%), Gaps = 223/588 (37%)
Query: 298 ALQPLYASEDLKGKLEL-F---TSKFKDRIVAMTLDKEYDVAVHAVRLVISILKLFVPDD 353
+ +PL S G LE T+ F +A L ++++ + + F DD
Sbjct: 5 STRPLTLSH---GSLEHVLLVPTASF---FIASQLQEQFNKILPEP------TEGFAADD 52
Query: 354 EFANVHTKGGKRRLKNTPLIRDLV-QF--FIESELHEHGAYLVDSLIESNEMMKDWECM- 409
E TP +LV +F ++ S + D ++ + ++E
Sbjct: 53 EPT-------------TPA--ELVGKFLGYVSSLVEPSKVGQFDQVLNL--CLTEFENCY 95
Query: 410 ---TD-------LLLEEPNPK----------YN-----EEPLDDRQETSLIELMVCCVRQ 444
D LL E + P D + ++L R
Sbjct: 96 LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF-------RA 148
Query: 445 AATGDAPV-----GRGPNRRIASMKEMKQVQDDKQRLTEHFIKVLPQLLDKYVADHDKLT 499
G+A + G+G +E++ + L IK + L + +
Sbjct: 149 VGEGNAQLVAIFGGQGNTD--DYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAE 206
Query: 500 NLLSLPQYFDLNIYTTSRREKDLDELLKKLQKIVDKHNDTEVLETCAKT-----LETLCC 554
+ Q + +L+ L+ + D + L + + + L
Sbjct: 207 KV--FTQGLN---------------ILEWLENPSNTP-DKDYLLSIPISCPLIGVIQLAH 248
Query: 555 EENASI---FTRCDVQRR----TLIEKTIVD-KYTESLDDWNNSLEAGVKPDDDETF--N 604
+ FT +++ T + +V D W E+F +
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW-------------ESFFVS 295
Query: 605 LVSSLKKIATFYSCHNMGQWNVWDTAYKTILEAQSNSPK-APPQEAVQYCMRACYFSLLW 663
+ ++ F+ +G + P + P ++ +
Sbjct: 296 VRKAIT--VLFF----IG------------VRCYEAYPNTSLPPSILEDSL--------- 328
Query: 664 DLHHCEELAQSGAGT-----AVEDAVAETKGRLLRFMDSMEEMLKLEHCEEYKEEKGHL- 717
++ G ++ + T+ ++ + + + +
Sbjct: 329 ---------ENNEGVPSPMLSISNL---TQEQVQDY---------VNKTNSHLPAGKQVE 367
Query: 718 --------NF-----------LN---RKLTAP-------LP-SSRQKNEDWQPLEL---Y 744
N LN RK AP +P S R+ + L + +
Sbjct: 368 ISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF 427
Query: 745 KTSLLHGESDSVSAATKKN-------------YSRKNKKDMEEEHEEL 779
+ LL SD ++ KN Y + D+ +
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI 475
Score = 39.6 bits (92), Expect = 0.005
Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 28/129 (21%)
Query: 33 IQEPF-TPY-TPYSNHAQTPLH-NPIHFRNREITIIVHNIFVRQNLFQKKTIAATHYQVD 89
+ PF + P S+ L N + F ++I I V++ F +L + + + + VD
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL-RVLSGSISERIVD 481
Query: 90 -LTSTPYQVRLIMLVDEWIEQYK---SH-------KESALLSLMQFFINGSGCR----GK 134
+ P V W + +H S L L +G+G R G
Sbjct: 482 CIIRLP--------VK-WETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGT 532
Query: 135 ITSNMANNM 143
+ N ++
Sbjct: 533 LDINPDDDY 541
>2ffj_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; 2.45A {Archaeoglobus fulgidus} SCOP: e.50.1.1
Length = 300
Score = 33.3 bits (76), Expect = 0.23
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 473 KQRLTEHFIKVLPQLLDKYVADHDKLTNLLSLPQ---YFDLNIYTTSRREKDLDELLKKL 529
K R E +VLP + D + + FD + E++ + LK+
Sbjct: 87 KARANEVARQVLPLAKEIVEGSDDPFKTAVIVSIVGNNFDYGVQGHKVVEEEFRDFLKRK 146
Query: 530 QKIVDKHNDTEVLE 543
+ K NDTE ++
Sbjct: 147 VQEGLKINDTERIK 160
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics,
structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB:
2yqm_A
Length = 82
Score = 28.2 bits (63), Expect = 2.2
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 6/39 (15%)
Query: 635 LEAQSNSPKAP---PQEAVQYCMRACY--FSLLWDLHHC 668
++ + + K + +C + C FS+ HHC
Sbjct: 1 IKEVNQALKGHAWLKDDEATHCRQ-CEKEFSISRRKHHC 38
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania
major}
Length = 84
Score = 28.2 bits (63), Expect = 2.5
Identities = 8/39 (20%), Positives = 10/39 (25%), Gaps = 6/39 (15%)
Query: 635 LEAQSNSPKAP---PQEAVQYCMRACY--FSLLWDLHHC 668
L + E C C F+ HHC
Sbjct: 3 LGSMGEKQSKGYWQEDEDAPACNG-CGCVFTTTVRRHHC 40
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics
consortium, SGC, lipid BIND protein, transport protein;
1.09A {Homo sapiens}
Length = 90
Score = 28.2 bits (63), Expect = 2.5
Identities = 11/39 (28%), Positives = 13/39 (33%), Gaps = 6/39 (15%)
Query: 635 LEAQSNSPKAP---PQEAVQYCMRACY--FSLLWDLHHC 668
+E K P P CM C F+ HHC
Sbjct: 2 MEGLVLGQKQPTWVPDSEAPNCMN-CQVKFTFTKRRHHC 39
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold,
oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti}
PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A*
3all_A*
Length = 379
Score = 30.0 bits (68), Expect = 2.9
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 671 LAQSGAGTAVEDAVAETKGRLLRFMDSMEEMLKL 704
LAQ GAG A+ +A + + L S+E+ L
Sbjct: 297 LAQ-GAGCAMVNAFS--LSQDLEEGSSVEDALVA 327
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 3.5
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 337 HAVRLVISILKLFVPD 352
A++ + + LKL+ D
Sbjct: 20 QALKKLQASLKLYADD 35
Score = 28.4 bits (62), Expect = 5.4
Identities = 12/44 (27%), Positives = 14/44 (31%), Gaps = 16/44 (36%)
Query: 472 DKQRLTEHFIKVLPQLLDKYVADHDKLTNLLSLPQYFDLNIYTT 515
+KQ +K L L Y D S P L I T
Sbjct: 18 EKQA-----LKKLQASLKLYADD--------SAPA---LAIKAT 45
>2djm_A Glucoamylase A; beta sandwich, anti-parallel, strach binding,
carbohydrate binding, sugar binding protein; NMR
{Rhizopus oryzae} PDB: 2v8l_A* 2v8m_A* 2vq4_A
Length = 106
Score = 27.8 bits (62), Expect = 5.2
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Query: 573 EKTIVDKYTESLDDWNNSLEA-------GVKPDDDETFNLVSSLKKIATFYSCHNMGQWN 625
K + Y + D+WNN+ + + E + +S+K I FY + +
Sbjct: 33 SKKVTVVYADGSDNWNNNGNIIAASFSGPISGSNYEYWTFSASVKGIKEFYIKYEVSGKT 92
Query: 626 VWD 628
+D
Sbjct: 93 YYD 95
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 5.3
Identities = 7/32 (21%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 250 RQYESERQKTRDKRASDRLESLMTK-RQELEE 280
R+ + +R + D + + K +++LEE
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEE 122
>2b82_A APHA, class B acid phosphatase; DDDD acid phosphatase, metallo-ENZ
hydrolase; HET: ADN; 1.25A {Escherichia coli} SCOP:
c.108.1.12 PDB: 2b8j_A* 2hf7_A 1rmt_A* 1n9k_A 1rmq_A
1n8n_A* 1rmy_A* 2g1a_A* 3cz4_A 2heg_A* 1z5g_A 1z5u_A*
1z88_A 2aut_A
Length = 211
Score = 29.0 bits (64), Expect = 5.3
Identities = 12/86 (13%), Positives = 25/86 (29%), Gaps = 12/86 (13%)
Query: 512 IYTTSRREKDLDELLKKLQKIVDKHNDTEVLETCAKTLETLCCEENASIFTRCDVQRRTL 571
+ T R + + K L + + T+ + L
Sbjct: 108 FFVTGRSPTKTETVSKTLADNFHIPATNM--------NPVIFAGDKPGQNTK----SQWL 155
Query: 572 IEKTIVDKYTESLDDWNNSLEAGVKP 597
+K I Y +S +D + + G +
Sbjct: 156 QDKNIRIFYGDSDNDITAARDVGARG 181
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome
P450, endoplasmic reticulum, fatty acid biosynthesis,
heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo
sapiens} PDB: 2iag_A*
Length = 498
Score = 29.4 bits (66), Expect = 5.9
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 254 SERQKTRDKRASDRLESLMTKRQELEENMDEIKNMLTYMFKSVFALQ 300
S + R S LES + +E+ + + L +A Q
Sbjct: 232 SPARLARRAHRSKWLESYLLHLEEMGVSEEMQARALVLQL---WATQ 275
>3o3v_A Beta-lactamase, CLBP protein; alpha/beta, disulfide bridge,
hydrolase; 2.40A {Escherichia coli}
Length = 335
Score = 28.9 bits (65), Expect = 6.9
Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 17/87 (19%)
Query: 459 RIASM-KE------MKQVQDDKQRLTEHFIKVLPQLLDKYVADHDKLT--NLLS----LP 505
+ SM K +Q+ + R + I LP++ Y LT + L LP
Sbjct: 52 ELGSMSKAFTGLVVQILIQEGRLRQGDDIITYLPEMRLNYQGKPASLTVADFLYHTSGLP 111
Query: 506 QYFDLNIYTTSRREKDLDELLKKLQKI 532
+ + ++L+
Sbjct: 112 FSTLARL----ENPMPGSAVAQQLRNE 134
>2qeb_A D7R4 protein; all-helical, odorant-binding protein, ligand binding
protein; 2.00A {Anopheles gambiae} PDB: 2pql_A 2qeh_A*
2qeo_A* 2qev_A
Length = 145
Score = 28.2 bits (62), Expect = 6.9
Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 6/73 (8%)
Query: 513 YTTSRREKDLDELLKKLQKIVDKHNDTEVLETCAKTLETLCCEENASIFTRCDVQRRTLI 572
+ D +L L I LE C + E A +F +C L+
Sbjct: 46 FVYEDGRGDYHKLYDPLNIIELDKRHDVNLEKCIGECVQVPTSERAHVFYKC------LL 99
Query: 573 EKTIVDKYTESLD 585
+ T + + D
Sbjct: 100 KSTTGRTFKKVFD 112
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 28.5 bits (64), Expect = 8.7
Identities = 9/69 (13%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Query: 229 KLMTALVDVALVVSVNLDNTQRQYESERQKTRDKRASDRLESLMTKRQELEENMDEIKNM 288
+ L V + + R + ++ E L + +++ +IK
Sbjct: 208 GELKTYKSPGLEVLFQGPRGS---RYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKK 264
Query: 289 LTYMFKSVF 297
+F+ F
Sbjct: 265 RKELFEKTF 273
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.385
Gapped
Lambda K H
0.267 0.0531 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,947,182
Number of extensions: 721731
Number of successful extensions: 1782
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1757
Number of HSP's successfully gapped: 43
Length of query: 792
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 691
Effective length of database: 3,881,772
Effective search space: 2682304452
Effective search space used: 2682304452
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.7 bits)