RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14013
         (792 letters)



>d2ffja1 e.50.1.1 (A:7-288) Hypothetical protein AF1104
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 282

 Score = 34.1 bits (78), Expect = 0.055
 Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 3/76 (3%)

Query: 473 KQRLTEHFIKVLPQLLDKYVADHDKLTNLLSLPQ---YFDLNIYTTSRREKDLDELLKKL 529
           K R  E   +VLP   +      D     + +      FD  +      E++  + LK+ 
Sbjct: 69  KARANEVARQVLPLAKEIVEGSDDPFKTAVIVSIVGNNFDYGVQGHKVVEEEFRDFLKRK 128

Query: 530 QKIVDKHNDTEVLETC 545
            +   K NDTE ++  
Sbjct: 129 VQEGLKINDTERIKEL 144


>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma
           acidophilum [TaxId: 2303]}
          Length = 256

 Score = 32.4 bits (73), Expect = 0.18
 Identities = 37/245 (15%), Positives = 82/245 (33%), Gaps = 15/245 (6%)

Query: 90  LTSTPYQVRLIMLVDEWIEQYKSHKESALLSLMQF---FINGSGCRGKITSNMANNMEH- 145
           L  TP   R+ +  DE I +   + +  +L   +     I G     +   ++    ++ 
Sbjct: 7   LLETPGNTRMSLAYDEAIYRSFQYGDKPILRFYRHDRSVIIGYFQVAEEEVDLDYMKKNG 66

Query: 146 AAIIRKMT------EEFDEESGEYPLIMAGQQWKKFRSNFCDFVAHLVKQCQYSIIYDQY 199
             + R+ T       +  + +                    + V + ++         + 
Sbjct: 67  IMLARRYTGGGAVYHDLGDLNFSVVRSSDDMDITSMFRTMNEAVVNSLRILGLDARPGE- 125

Query: 200 LMDNVISLLTGLSDSQVRAFRHTATLAAMKLMTALVDVALVVSVNLDNTQRQYESERQKT 259
            +++V   +   +D      +      AM+    L   A++V  +LD      +   +K 
Sbjct: 126 -LNDVSIPVNKKTDIMAGEKKIMGAAGAMRKGAKLWHAAMLVHTDLDMLSAVLKVPDEKF 184

Query: 260 RDKRASDRLESLMTKRQELEENMDEIKNMLTYMFKSVFALQPL---YASEDLKGKLELFT 316
           RDK A    E +      ++ ++DE++N L   F     +         ++     ELF 
Sbjct: 185 RDKIAKSTRERVANVTDFVDVSIDEVRNALIRGFSETLHIDFREDTITEKEESLARELFD 244

Query: 317 SKFKD 321
            K+  
Sbjct: 245 KKYST 249


>d2itba1 a.25.1.7 (A:3-201) Putative tRNA-(Ms(2)io(6)a)-hydroxylase
           PP2188 {Pseudomonas putida [TaxId: 303]}
          Length = 199

 Score = 30.2 bits (68), Expect = 0.60
 Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 20/111 (18%)

Query: 104 DEWIEQYKSHKESALLSLMQFFINGSGCRGKITSN----MANNMEHAAIIRKMTEEFDEE 159
           D WIE        AL       I+   C  K  S     +A    H  +I  M+    EE
Sbjct: 15  DAWIEA-------ALADQETLLIDHKNCEFKAASTALSLIAKYNTHLDLINMMSRLAREE 67

Query: 160 SGEYPLIMA-----GQQWKKFRSNFCDFVAHLVKQCQYSIIYDQYLMDNVI 205
              +  ++      G   +   +    + + L +  +        L+D ++
Sbjct: 68  LVHHEQVLRLMKRRGVPLRPVSA--GRYASGLRRLVRAH--EPVKLVDTLV 114


>d2g8la1 e.50.1.1 (A:1-284) Hypothetical protein PH1575 {Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 284

 Score = 30.2 bits (68), Expect = 0.75
 Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 473 KQRLTEHFIKVLPQLLDKYVADHDKLTNLLSLPQYFDLNIYTTSRREKDLDELLKKLQKI 532
           K +  E   KV   +  K   D +    L  +    D ++       +DL+E ++K+ K 
Sbjct: 75  KLKSEEMARKVADIIKRKLKLDFELAVKLAIIGNVIDFSVGF---SPEDLEEEVEKMLKD 131

Query: 533 VDKHNDTEVL 542
               +D++ L
Sbjct: 132 KLYIDDSKEL 141


>d2b5dx1 a.8.3.3 (X:415-528) Alpha-amylase AmyC {Thermotoga maritima
           [TaxId: 2336]}
          Length = 114

 Score = 26.7 bits (59), Expect = 5.3
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 7/50 (14%)

Query: 671 LAQS-------GAGTAVEDAVAETKGRLLRFMDSMEEMLKLEHCEEYKEE 713
           LAQS          T+V+ A   TK  + RF++  ++++     EE    
Sbjct: 44  LAQSSDWAFIMTTRTSVQYAENRTKLHIKRFLNLYDQLVSGRIDEEMLRY 93


>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK
           subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}
          Length = 160

 Score = 27.0 bits (59), Expect = 6.8
 Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 2/101 (1%)

Query: 605 LVSSLKKIATFYSCHNM--GQWNVWDTAYKTILEAQSNSPKAPPQEAVQYCMRACYFSLL 662
           L    K++        +  G  +      +       N       +   Y  +     L+
Sbjct: 23  LYELAKQLEKTGCQMTILLGFASENVKILENEFSNLKNVTLKIATDDGSYGTKGHVGMLM 82

Query: 663 WDLHHCEELAQSGAGTAVEDAVAETKGRLLRFMDSMEEMLK 703
            ++    +   +    A+  AVA+   +L R   SME  + 
Sbjct: 83  NEIDFEVDALYTCGAPAMLKAVAKKYDQLERLYISMESRMA 123


>d1kr4a_ d.58.5.2 (A:) Hypothetical protein TM1056 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 110

 Score = 26.3 bits (58), Expect = 7.0
 Identities = 18/109 (16%), Positives = 45/109 (41%), Gaps = 13/109 (11%)

Query: 199 YLMDNVISLLTGLSDSQVRAFRHTATLAAMKLMTALVDVALVVSVNLDNTQRQYESERQK 258
           Y M ++I + +   + +           A+++   L++  L+   N    +  Y  + + 
Sbjct: 3   YFMGHMILVYSTFPNEEK----------ALEIGRKLLEKRLIACFNAFEIRSGYWWKGEI 52

Query: 259 TRDKRASDRLESLMTKRQELEENMDEIKNMLTYMFKSVFALQPLYASED 307
            +DK  +   ++   K +EL E   E++ +  Y   ++F L+      +
Sbjct: 53  VQDKEWAAIFKTTEEKEKELYE---ELRKLHPYETPAIFTLKVENILTE 98


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,898,809
Number of extensions: 136702
Number of successful extensions: 482
Number of sequences better than 10.0: 1
Number of HSP's gapped: 480
Number of HSP's successfully gapped: 18
Length of query: 792
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 699
Effective length of database: 1,130,706
Effective search space: 790363494
Effective search space used: 790363494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.9 bits)