BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14014
         (615 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
           Holoenzyme.
 pdb|2IAE|D Chain D, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
           Holoenzyme.
 pdb|2PF4|A Chain A, Crystal Structure Of The Full-Length Simian Virus 40 Small
           T Antigen Complexed With The Protein Phosphatase 2a
           Aalpha Subunit
 pdb|2PF4|B Chain B, Crystal Structure Of The Full-Length Simian Virus 40 Small
           T Antigen Complexed With The Protein Phosphatase 2a
           Aalpha Subunit
 pdb|2PF4|C Chain C, Crystal Structure Of The Full-Length Simian Virus 40 Small
           T Antigen Complexed With The Protein Phosphatase 2a
           Aalpha Subunit
 pdb|2PF4|D Chain D, Crystal Structure Of The Full-Length Simian Virus 40 Small
           T Antigen Complexed With The Protein Phosphatase 2a
           Aalpha Subunit
          Length = 589

 Score =  927 bits (2395), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/629 (73%), Positives = 514/629 (81%), Gaps = 59/629 (9%)

Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           MA++D   DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+T
Sbjct: 1   MAAADG--DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDT 58

Query: 61  IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
           IYDEDEVLLALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +
Sbjct: 59  IYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE 118

Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
           HSP DLEAHFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDT
Sbjct: 119 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT 178

Query: 181 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 240
           PMVRRAAA KLGE AKV+E+D +K++IIPMF NLA DEQDSVRLLAVEACV+IA LL Q 
Sbjct: 179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238

Query: 241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEV 300
           D+E LVMPTLRQ + D SWRVRYMVADKFT+LQKAVGPEITKTDLV AFQ L+KD EAEV
Sbjct: 239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 298

Query: 301 RAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK 360
           RAAA++KV++FC+NL A  +EN+IMT ILP +K+LV+D NQHVKSALASVIMGLSPILGK
Sbjct: 299 RAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGK 358

Query: 361 HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ-----------------WR 403
            NT++HLLPLFL+QLKDECPEVRLNIISNLDCVNEVIGI+Q                 WR
Sbjct: 359 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 418

Query: 404 VRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEF 463
           VRLAIIEYMPLLAGQLGVEFFDEKLN+                                 
Sbjct: 419 VRLAIIEYMPLLAGQLGVEFFDEKLNS--------------------------------- 445

Query: 464 FDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHR 523
                  LCM WLVDHVYAIREAAT NLKKLVE+FG EWA +T+IPKV+AMS D NYLHR
Sbjct: 446 -------LCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHR 498

Query: 524 MTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQS 583
           MT LFCINVL+E CG  +T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS
Sbjct: 499 MTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQS 558

Query: 584 QVKPALDKLNGDTDVDVKYFAQEAISSIA 612
           +VKP L+KL  D DVDVKYFAQEA++ ++
Sbjct: 559 EVKPILEKLTQDQDVDVKYFAQEALTVLS 587


>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
           To Tumor- Inducing Toxins
 pdb|2IE4|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
           To Okadaic Acid
 pdb|2NPP|A Chain A, Structure Of The Protein Phosphatase 2a Holoenzyme
 pdb|2NPP|D Chain D, Structure Of The Protein Phosphatase 2a Holoenzyme
 pdb|3K7V|A Chain A, Protein Phosphatase 2a Core Complex Bound To
           Dinophysistoxin-1
 pdb|3K7W|A Chain A, Protein Phosphatase 2a Core Complex Bound To
           Dinophysistoxin-2
          Length = 589

 Score =  926 bits (2392), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/629 (73%), Positives = 514/629 (81%), Gaps = 59/629 (9%)

Query: 1   MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
           MA++D   DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+T
Sbjct: 1   MAAADG--DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDT 58

Query: 61  IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
           IYDEDEVLLALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +
Sbjct: 59  IYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE 118

Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
           HSP DLEAHFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDT
Sbjct: 119 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT 178

Query: 181 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 240
           PMVRRAAA KLGE AKV+E+D +K++IIPMF NLA DEQDSVRLLAVEACV+IA LL Q 
Sbjct: 179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238

Query: 241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEV 300
           D+E LVMPTLRQ + D SWRVRYMVADKFT+LQKAVGPEITKTDLV AFQ L+KD EAEV
Sbjct: 239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 298

Query: 301 RAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK 360
           RAAA++KV++FC+NL A  +EN+IM+ ILP +K+LV+D NQHVKSALASVIMGLSPILGK
Sbjct: 299 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 358

Query: 361 HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ-----------------WR 403
            NT++HLLPLFL+QLKDECPEVRLNIISNLDCVNEVIGI+Q                 WR
Sbjct: 359 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 418

Query: 404 VRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEF 463
           VRLAIIEYMPLLAGQLGVEFFDEKLN+                                 
Sbjct: 419 VRLAIIEYMPLLAGQLGVEFFDEKLNS--------------------------------- 445

Query: 464 FDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHR 523
                  LCM WLVDHVYAIREAAT NLKKLVE+FG EWA +T+IPKV+AMS D NYLHR
Sbjct: 446 -------LCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHR 498

Query: 524 MTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQS 583
           MT LFCINVL+E CG  +T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS
Sbjct: 499 MTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQS 558

Query: 584 QVKPALDKLNGDTDVDVKYFAQEAISSIA 612
           +VKP L+KL  D DVDVKYFAQEA++ ++
Sbjct: 559 EVKPILEKLTQDQDVDVKYFAQEALTVLS 587


>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction
          Length = 588

 Score =  924 bits (2388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/621 (73%), Positives = 509/621 (81%), Gaps = 57/621 (9%)

Query: 9   DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVL 68
           DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+TIYDEDEVL
Sbjct: 6   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 65

Query: 69  LALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEA 128
           LALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +HSP DLEA
Sbjct: 66  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125

Query: 129 HFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAA 188
           HFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDTPMVRRAAA
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 185

Query: 189 GKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMP 248
            KLGE AKV+E+D +K++IIPMF NLA DEQDSVRLLAVEACV+IA LL Q D+E LVMP
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 245

Query: 249 TLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKV 308
           TLRQ + D SWRVRYMVADKFT+LQKAVGPEITKTDLV AFQ L+KD EAEVRAAA++KV
Sbjct: 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305

Query: 309 RDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLL 368
           ++FC+NL A  +EN+IMT ILP +K+LV+D NQHVKSALASVIMGLSPILGK NT++HLL
Sbjct: 306 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 365

Query: 369 PLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ-----------------WRVRLAIIEY 411
           PLFL+QLKDECPEVRLNIISNLDCVNEVIGI+Q                 WRVRLAIIEY
Sbjct: 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 425

Query: 412 MPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNAL 471
           MPLLAGQLGVEFFDEKLN+                                        L
Sbjct: 426 MPLLAGQLGVEFFDEKLNS----------------------------------------L 445

Query: 472 CMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCIN 531
           CM WLVDHVYAIREAAT NLKKLVE+FG EWA +T+IPKV+AMS D NYLHRMT LFCIN
Sbjct: 446 CMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCIN 505

Query: 532 VLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDK 591
           VL+E CG  +T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+K
Sbjct: 506 VLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEK 565

Query: 592 LNGDTDVDVKYFAQEAISSIA 612
           L  D DVDVKYFAQEA++ ++
Sbjct: 566 LTQDQDVDVKYFAQEALTVLS 586


>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human
           Pp2a, Pr65alpha
 pdb|1B3U|B Chain B, Crystal Structure Of Constant Regulatory Domain Of Human
           Pp2a, Pr65alpha
          Length = 588

 Score =  923 bits (2385), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/621 (73%), Positives = 509/621 (81%), Gaps = 57/621 (9%)

Query: 9   DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVL 68
           DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+TIYDEDEVL
Sbjct: 6   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 65

Query: 69  LALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEA 128
           LALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +HSP DLEA
Sbjct: 66  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125

Query: 129 HFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAA 188
           HFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDTPMVRRAAA
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 185

Query: 189 GKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMP 248
            KLGE AKV+E+D +K++IIPMF NLA DEQDSVRLLAVEACV+IA LL Q D+E LVMP
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 245

Query: 249 TLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKV 308
           TLRQ + D SWRVRYMVADKFT+LQKAVGPEITKTDLV AFQ L+KD EAEVRAAA++KV
Sbjct: 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305

Query: 309 RDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLL 368
           ++FC+NL A  +EN+IM+ ILP +K+LV+D NQHVKSALASVIMGLSPILGK NT++HLL
Sbjct: 306 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 365

Query: 369 PLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ-----------------WRVRLAIIEY 411
           PLFL+QLKDECPEVRLNIISNLDCVNEVIGI+Q                 WRVRLAIIEY
Sbjct: 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 425

Query: 412 MPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNAL 471
           MPLLAGQLGVEFFDEKLN+                                        L
Sbjct: 426 MPLLAGQLGVEFFDEKLNS----------------------------------------L 445

Query: 472 CMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCIN 531
           CM WLVDHVYAIREAAT NLKKLVE+FG EWA +T+IPKV+AMS D NYLHRMT LFCIN
Sbjct: 446 CMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCIN 505

Query: 532 VLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDK 591
           VL+E CG  +T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+K
Sbjct: 506 VLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEK 565

Query: 592 LNGDTDVDVKYFAQEAISSIA 612
           L  D DVDVKYFAQEA++ ++
Sbjct: 566 LTQDQDVDVKYFAQEALTVLS 586


>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
           Subunit
 pdb|3DW8|D Chain D, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
           Subunit
          Length = 582

 Score =  919 bits (2374), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/619 (73%), Positives = 507/619 (81%), Gaps = 57/619 (9%)

Query: 11  SLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLA 70
           SLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+TIYDEDEVLLA
Sbjct: 2   SLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLA 61

Query: 71  LAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHF 130
           LAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +HSP DLEAHF
Sbjct: 62  LAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 121

Query: 131 VPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGK 190
           VPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDTPMVRRAAA K
Sbjct: 122 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASK 181

Query: 191 LGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTL 250
           LGE AKV+E+D +K++IIPMF NLA DEQDSVRLLAVEACV+IA LL Q D+E LVMPTL
Sbjct: 182 LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 241

Query: 251 RQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRD 310
           RQ + D SWRVRYMVADKFT+LQKAVGPEITKTDLV AFQ L+KD EAEVRAAA++KV++
Sbjct: 242 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE 301

Query: 311 FCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPL 370
           FC+NL A  +EN+IM+ ILP +K+LV+D NQHVKSALASVIMGLSPILGK NT++HLLPL
Sbjct: 302 FCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL 361

Query: 371 FLSQLKDECPEVRLNIISNLDCVNEVIGIQQ-----------------WRVRLAIIEYMP 413
           FL+QLKDECPEVRLNIISNLDCVNEVIGI+Q                 WRVRLAIIEYMP
Sbjct: 362 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 421

Query: 414 LLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCM 473
           LLAGQLGVEFFDEKLN+                                        LCM
Sbjct: 422 LLAGQLGVEFFDEKLNS----------------------------------------LCM 441

Query: 474 TWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVL 533
            WLVDHVYAIREAAT NLKKLVE+FG EWA +T+IPKV+AMS D NYLHRMT LFCINVL
Sbjct: 442 AWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVL 501

Query: 534 AEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLN 593
           +E CG  +T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+KL 
Sbjct: 502 SEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLT 561

Query: 594 GDTDVDVKYFAQEAISSIA 612
            D DVDVKYFAQEA++ ++
Sbjct: 562 QDQDVDVKYFAQEALTVLS 580


>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein
           Phosphatase 2a And The Small T Antigen Of Sv40
 pdb|2PKG|B Chain B, Structure Of A Complex Between The A Subunit Of Protein
           Phosphatase 2a And The Small T Antigen Of Sv40
          Length = 580

 Score =  917 bits (2369), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/618 (73%), Positives = 506/618 (81%), Gaps = 57/618 (9%)

Query: 12  LYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLAL 71
           LYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+TIYDEDEVLLAL
Sbjct: 1   LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLAL 60

Query: 72  AEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFV 131
           AEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +HSP DLEAHFV
Sbjct: 61  AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 120

Query: 132 PLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKL 191
           PLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDTPMVRRAAA KL
Sbjct: 121 PLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKL 180

Query: 192 GELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLR 251
           GE AKV+E+D +K++IIPMF NLA DEQDSVRLLAVEACV+IA LL Q D+E LVMPTLR
Sbjct: 181 GEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLR 240

Query: 252 QCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDF 311
           Q + D SWRVRYMVADKFT+LQKAVGPEITKTDLV AFQ L+KD EAEVRAAA++KV++F
Sbjct: 241 QAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEF 300

Query: 312 CQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLF 371
           C+NL A  +EN+IM+ ILP +K+LV+D NQHVKSALASVIMGLSPILGK NT++HLLPLF
Sbjct: 301 CENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLF 360

Query: 372 LSQLKDECPEVRLNIISNLDCVNEVIGIQQ-----------------WRVRLAIIEYMPL 414
           L+QLKDECPEVRLNIISNLDCVNEVIGI+Q                 WRVRLAIIEYMPL
Sbjct: 361 LAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPL 420

Query: 415 LAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMT 474
           LAGQLGVEFFDEKLN+                                        LCM 
Sbjct: 421 LAGQLGVEFFDEKLNS----------------------------------------LCMA 440

Query: 475 WLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLA 534
           WLVDHVYAIREAAT NLKKLVE+FG EWA +T+IPKV+AMS D NYLHRMT LFCINVL+
Sbjct: 441 WLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLS 500

Query: 535 EACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNG 594
           E CG  +T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+KL  
Sbjct: 501 EVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQ 560

Query: 595 DTDVDVKYFAQEAISSIA 612
           D DVDVKYFAQEA++ ++
Sbjct: 561 DQDVDVKYFAQEALTVLS 578


>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
           Holoenzyme With The Catalytic Subunit Carboxyl Terminus
           Truncated
 pdb|2NYL|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
           Holoenzyme With The Catalytic Subunit Carboxyl Terminus
           Truncated
 pdb|2NYM|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
           C-Terminus Truncated Catalytic Subunit
 pdb|2NYM|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
           C-Terminus Truncated Catalytic Subunit
          Length = 582

 Score =  889 bits (2297), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/620 (71%), Positives = 495/620 (79%), Gaps = 57/620 (9%)

Query: 10  DSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLL 69
           DSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+TIYDEDEVLL
Sbjct: 1   DSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLL 60

Query: 70  ALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAH 129
           ALAEQLGTFT  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +HSP DLEAH
Sbjct: 61  ALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH 120

Query: 130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAG 189
           FVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDTP VRRAAA 
Sbjct: 121 FVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPXVRRAAAS 180

Query: 190 KLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPT 249
           KLGE AKV+E+D +K++IIP F NLA DEQDSVRLLAVEACV+IA LL Q D+E LV PT
Sbjct: 181 KLGEFAKVLELDNVKSEIIPXFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVXPT 240

Query: 250 LRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVR 309
           LRQ + D SWRVRY VADKFT+LQKAVGPEITKTDLV AFQ L KD EAEVRAAA++KV+
Sbjct: 241 LRQAAEDKSWRVRYXVADKFTELQKAVGPEITKTDLVPAFQNLXKDCEAEVRAAASHKVK 300

Query: 310 DFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLP 369
           +FC+NL A  +EN+I + ILP +K+LV+D NQHVKSALASVI GLSPILGK NT++HLLP
Sbjct: 301 EFCENLSADCRENVIXSQILPCIKELVSDANQHVKSALASVIXGLSPILGKDNTIEHLLP 360

Query: 370 LFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ-----------------WRVRLAIIEYM 412
           LFL+QLKDECPEVRLNIISNLDCVNEVIGI+Q                 WRVRLAIIEY 
Sbjct: 361 LFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYX 420

Query: 413 PLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALC 472
           PLLAGQLGVEFFDEKLN                                        +LC
Sbjct: 421 PLLAGQLGVEFFDEKLN----------------------------------------SLC 440

Query: 473 MTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINV 532
             WLVDHVYAIREAAT NLKKLVE+FG EWA +T+IPKV+A S D NYLHR T LFCINV
Sbjct: 441 XAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAXSGDPNYLHRXTTLFCINV 500

Query: 533 LAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 592
           L+E CG  +T    LPTVL  AGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+KL
Sbjct: 501 LSEVCGQDITTKHXLPTVLRXAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 560

Query: 593 NGDTDVDVKYFAQEAISSIA 612
             D DVDVKYFAQEA++ ++
Sbjct: 561 TQDQDVDVKYFAQEALTVLS 580



 Score = 37.7 bits (86), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 54/289 (18%), Positives = 112/289 (38%), Gaps = 27/289 (9%)

Query: 328 ILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNII 387
           +LP++ D + D ++ V  ALA  +   + ++G    V  LLP   S    E   VR   +
Sbjct: 44  LLPFLTDTIYDEDE-VLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAV 102

Query: 388 SNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLA 447
            +L  ++                ++PL+    G ++F  + +A  +  +           
Sbjct: 103 ESLRAISHEHSPSDLEAH-----FVPLVKRLAGGDWFTSRTSACGLFSVC---------- 147

Query: 448 IIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTV 507
                P ++  +  E   +    LC     D    +R AA   L +  +    +  +S +
Sbjct: 148 ----YPRVSSAVKAEL-RQYFRNLCS----DDTPXVRRAAASKLGEFAKVLELDNVKSEI 198

Query: 508 IPKVVAMSRD-QNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVA 566
           IP    ++ D Q+ +  +    C+N+ A+          + PT+   A D    VR+ VA
Sbjct: 199 IPXFSNLASDEQDSVRLLAVEACVNI-AQLLPQEDLEALVXPTLRQAAEDKSWRVRYXVA 257

Query: 567 KTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKYFAQEAISSIADSI 615
               ++   +   + ++ + PA   L  D + +V+  A   +    +++
Sbjct: 258 DKFTELQKAVGPEITKTDLVPAFQNLXKDCEAEVRAAASHKVKEFCENL 306


>pdb|3C5W|A Chain A, Complex Between Pp2a-Specific Methylesterase Pme-1 And
           Pp2a Core Enzyme
          Length = 232

 Score =  306 bits (783), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 148/210 (70%), Positives = 174/210 (82%), Gaps = 1/210 (0%)

Query: 403 RVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVE 462
           ++RL  I+ +  +A  LGVE   + L   +IVELAED+KWRVRLAIIEYMPLLAGQLGVE
Sbjct: 22  QLRLNSIKKLSTIALALGVERLSQSLLP-AIVELAEDAKWRVRLAIIEYMPLLAGQLGVE 80

Query: 463 FFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLH 522
           FFDEKLN+LCM WLVDHVYAIREAAT NLKKLVE+FG EWA +T+IPKV+AMS D NYLH
Sbjct: 81  FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLH 140

Query: 523 RMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQ 582
           RMT LFCINVL+E CG  +T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +Q
Sbjct: 141 RMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQ 200

Query: 583 SQVKPALDKLNGDTDVDVKYFAQEAISSIA 612
           S+VKP L+KL  D DVDVKYFAQEA++ ++
Sbjct: 201 SEVKPILEKLTQDQDVDVKYFAQEALTVLS 230



 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 110/228 (48%), Gaps = 16/228 (7%)

Query: 11  SLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLL 69
           SLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ER    L+P + E   D    V L
Sbjct: 5   SLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERLSQSLLPAIVELAEDAKWRVRL 64

Query: 70  ALAEQLGTFTPNVGGPEYVHCLLPPLESLATV----EETVVRDKAVESLRLISAQHSPHD 125
           A+ E    + P + G   V      L SL           +R+ A  +L+ +  +     
Sbjct: 65  AIIE----YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW 120

Query: 126 LEAHFVPLVQRLASGDWFTSRTSACG----LFSVCYPRVTAGVKAELRSHFRNLCQDDTP 181
             A  +P V  ++    +  R +       L  VC   +T   K  L +  R +  D   
Sbjct: 121 AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITT--KHMLPTVLR-MAGDPVA 177

Query: 182 MVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEA 229
            VR   A  L ++  +++   L++++ P+   L QD+   V+  A EA
Sbjct: 178 NVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEA 225



 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 82/190 (43%), Gaps = 4/190 (2%)

Query: 208 IPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVAD 267
           I + ++  ++E   +RL +++   +IA  L    + Q ++P + + + D  WRVR  + +
Sbjct: 9   IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERLSQSLLPAIVELAEDAKWRVRLAIIE 68

Query: 268 KFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTY 327
               L   +G E     L       L D    +R AA + ++   +    + +E    T 
Sbjct: 69  YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEK---FGKEWAHAT- 124

Query: 328 ILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNII 387
           I+P V  +  DPN   +      I  LS + G+  T  H+LP  L    D    VR N+ 
Sbjct: 125 IIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVA 184

Query: 388 SNLDCVNEVI 397
            +L  +  ++
Sbjct: 185 KSLQKIGPIL 194


>pdb|3LTJ|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal
           Repeat Proteins (Alpha-Rep) Based On Thermostable
           Heat-Like Repeats
          Length = 201

 Score = 33.9 bits (76), Expect = 0.24,   Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 62/137 (45%), Gaps = 29/137 (21%)

Query: 171 HFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEAC 230
           + +NL QDD+  VRRAAA  LG++     V+ L        +   +DE   VR  A +A 
Sbjct: 19  YIKNL-QDDSYYVRRAAAYALGKIGDERAVEPL--------IKALKDEDAWVRRAAADA- 68

Query: 231 VSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDL--QKAVGPEITKTDLVQA 288
                 L Q   E+ V P ++    +  W VR   A     +  ++AV P      L++A
Sbjct: 69  ------LGQIGDERAVEPLIKALKDEDGW-VRQSAAVALGQIGDERAVEP------LIKA 115

Query: 289 FQMLLKDSEAEVRAAAA 305
               LKD +  VR AAA
Sbjct: 116 ----LKDEDWFVRIAAA 128



 Score = 30.8 bits (68), Expect = 2.6,   Method: Composition-based stats.
 Identities = 43/164 (26%), Positives = 68/164 (41%), Gaps = 29/164 (17%)

Query: 34  IKKLSTIALA-LGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCL 91
           +++ +  AL  +G ER    LI    + + DED  V  A A+ LG     +G    V  L
Sbjct: 30  VRRAAAYALGKIGDERAVEPLI----KALKDEDAWVRRAAADALG----QIGDERAVEPL 81

Query: 92  LPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACG 151
           +  L+     E+  VR  A  +L  I  + +         PL++ L   DWF    +A  
Sbjct: 82  IKALKD----EDGWVRQSAAVALGQIGDERAVE-------PLIKALKDEDWFVRIAAAFA 130

Query: 152 LFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELA 195
           L  +   R    +   L+        D+   VR++AA  LGE+ 
Sbjct: 131 LGEIGDERAVEPLIKALK--------DEDGWVRQSAADALGEIG 166


>pdb|3LTM|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal
           Repeat Proteins (Alpha-Rep) Based On Thermostable
           Heat-Like Repeats
 pdb|3LTM|B Chain B, Structure Of A New Family Of Artificial Alpha Helicoidal
           Repeat Proteins (Alpha-Rep) Based On Thermostable
           Heat-Like Repeats
          Length = 211

 Score = 31.2 bits (69), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 31/165 (18%)

Query: 34  IKKLSTIALA-LGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCL 91
           +++ +  AL  +G ER     +  L + + DED  V  A A+ LG     +G    V  L
Sbjct: 35  VRRAAAYALGKIGDERA----VEPLIKALKDEDAWVRRAAADALG----QIGDERAVEPL 86

Query: 92  LPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACG 151
           +  L+     E+  VR  A  +L  I  + +         PL++ L   DWF    +A  
Sbjct: 87  IKALKD----EDGWVRQSAAVALGQIGDERAVE-------PLIKALKDEDWFVRIAAAFA 135

Query: 152 LFSVCYPR-VTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELA 195
           L  +   R V   +KA          +D+   VR++AA  LGE+ 
Sbjct: 136 LGEIGDERAVEPLIKA---------LKDEDGWVRQSAADALGEIG 171



 Score = 31.2 bits (69), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 60/135 (44%), Gaps = 25/135 (18%)

Query: 171 HFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEAC 230
           + +NL QDD+  VRRAAA  LG++     V+       P+   L +DE   VR  A +A 
Sbjct: 24  YIKNL-QDDSYYVRRAAAYALGKIGDERAVE-------PLIKAL-KDEDAWVRRAAADA- 73

Query: 231 VSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQ 290
                 L Q   E+ V P ++    +  W VR   A         +G E     L++A  
Sbjct: 74  ------LGQIGDERAVEPLIKALKDEDGW-VRQSAAVALGQ----IGDERAVEPLIKA-- 120

Query: 291 MLLKDSEAEVRAAAA 305
             LKD +  VR AAA
Sbjct: 121 --LKDEDWFVRIAAA 133


>pdb|1GCJ|A Chain A, N-Terminal Fragment Of Importin-Beta
 pdb|1GCJ|B Chain B, N-Terminal Fragment Of Importin-Beta
          Length = 460

 Score = 30.8 bits (68), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 226 AVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDL 285
           A   C+ + S   + D+   V+P +++   +  WR R      F  + +   P   K  +
Sbjct: 353 AAGVCLXLLSTCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVXAFGSILEGPEPNQLKPLV 412

Query: 286 VQAFQMLL---KDSEAEVRAAAANKVRDFCQ 313
           +QA   L+   KD    VR   A  V   C+
Sbjct: 413 IQAXPTLIELXKDPSVVVRDTTAWTVGRICE 443


>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
 pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
 pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
 pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
 pdb|2Z5J|A Chain A, Free Transportin 1
 pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
 pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
 pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
 pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
          Length = 890

 Score = 30.8 bits (68), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 14/75 (18%)

Query: 34  IKKLSTIALALGQERTRGELIPFLTETIYD---------EDEVLLALAEQLGTFTPNVG- 83
           +++ +  A A  +E    EL+P+L   I D         + + LL L + +GT   +VG 
Sbjct: 496 VQEAACSAFATLEEEACTELVPYLA-YILDTLVFAFSKYQHKNLLILYDAIGTLADSVGH 554

Query: 84  ---GPEYVHCLLPPL 95
               PEY+  L+PPL
Sbjct: 555 HLNKPEYIQMLMPPL 569



 Score = 28.9 bits (63), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 74/370 (20%), Positives = 140/370 (37%), Gaps = 43/370 (11%)

Query: 125 DLEAHFVPLVQRLA-SGDWFTSRTSACGLFSVCYPRVTAGVK--AELRSHFRNLCQDDTP 181
           +L  H +PL++ L    +W    +    L ++    +   +    EL  H      D   
Sbjct: 393 ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKA 452

Query: 182 MVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD 241
           +VR      L   A  V      T + P+   L +   DS + +   AC + A+L  ++ 
Sbjct: 453 LVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC 512

Query: 242 VE-----QLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTD--------LVQA 288
            E       ++ TL         +   ++ D    L  +VG  + K +        L+Q 
Sbjct: 513 TELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQK 572

Query: 289 FQMLLKDSE----------AEVRAAAANKVRDFC----QNLDAYNQENIIMTYILPYVKD 334
           + ML KD +          + V  A  +    +C    Q      Q+ +    +     D
Sbjct: 573 WNML-KDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPD 631

Query: 335 LVADPNQHVKSALASVIMGLSPILGKH----NTVDHLLPLFLSQLKDECPEVRLNIISNL 390
               P++        ++ GL+  LG +        ++L L    ++D+ PEVR    S+ 
Sbjct: 632 QYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQ---SSF 688

Query: 391 DCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNA-LSIVELAEDSKWRVRLAII 449
             + ++       V+  I ++MP+L   L  EF     NA  +I E++     ++ + + 
Sbjct: 689 ALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEIS----IQMGIEMQ 744

Query: 450 EYMPLLAGQL 459
            Y+P++  QL
Sbjct: 745 PYIPMVLHQL 754


>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
 pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
          Length = 865

 Score = 30.8 bits (68), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 14/75 (18%)

Query: 34  IKKLSTIALALGQERTRGELIPFLTETIYD---------EDEVLLALAEQLGTFTPNVG- 83
           +++ +  A A  +E    EL+P+L   I D         + + LL L + +GT   +VG 
Sbjct: 471 VQEAACSAFATLEEEACTELVPYLA-YILDTLVFAFSKYQHKNLLILYDAIGTLADSVGH 529

Query: 84  ---GPEYVHCLLPPL 95
               PEY+  L+PPL
Sbjct: 530 HLNKPEYIQMLMPPL 544



 Score = 28.9 bits (63), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 74/370 (20%), Positives = 140/370 (37%), Gaps = 43/370 (11%)

Query: 125 DLEAHFVPLVQRLA-SGDWFTSRTSACGLFSVCYPRVTAGVK--AELRSHFRNLCQDDTP 181
           +L  H +PL++ L    +W    +    L ++    +   +    EL  H      D   
Sbjct: 368 ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKA 427

Query: 182 MVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD 241
           +VR      L   A  V      T + P+   L +   DS + +   AC + A+L  ++ 
Sbjct: 428 LVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC 487

Query: 242 VE-----QLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTD--------LVQA 288
            E       ++ TL         +   ++ D    L  +VG  + K +        L+Q 
Sbjct: 488 TELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQK 547

Query: 289 FQMLLKDSE----------AEVRAAAANKVRDFC----QNLDAYNQENIIMTYILPYVKD 334
           + ML KD +          + V  A  +    +C    Q      Q+ +    +     D
Sbjct: 548 WNML-KDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPD 606

Query: 335 LVADPNQHVKSALASVIMGLSPILGKH----NTVDHLLPLFLSQLKDECPEVRLNIISNL 390
               P++        ++ GL+  LG +        ++L L    ++D+ PEVR    S+ 
Sbjct: 607 QYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQ---SSF 663

Query: 391 DCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNA-LSIVELAEDSKWRVRLAII 449
             + ++       V+  I ++MP+L   L  EF     NA  +I E++     ++ + + 
Sbjct: 664 ALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEIS----IQMGIEMQ 719

Query: 450 EYMPLLAGQL 459
            Y+P++  QL
Sbjct: 720 PYIPMVLHQL 729


>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
 pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
 pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
 pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
           Saccharomyces Cerevisiae Nab2
          Length = 852

 Score = 30.8 bits (68), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 14/75 (18%)

Query: 34  IKKLSTIALALGQERTRGELIPFLTETIYD---------EDEVLLALAEQLGTFTPNVG- 83
           +++ +  A A  +E    EL+P+L   I D         + + LL L + +GT   +VG 
Sbjct: 458 VQEAACSAFATLEEEACTELVPYLA-YILDTLVFAFSKYQHKNLLILYDAIGTLADSVGH 516

Query: 84  ---GPEYVHCLLPPL 95
               PEY+  L+PPL
Sbjct: 517 HLNKPEYIQMLMPPL 531



 Score = 28.9 bits (63), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 74/370 (20%), Positives = 140/370 (37%), Gaps = 43/370 (11%)

Query: 125 DLEAHFVPLVQRLA-SGDWFTSRTSACGLFSVCYPRVTAGVK--AELRSHFRNLCQDDTP 181
           +L  H +PL++ L    +W    +    L ++    +   +    EL  H      D   
Sbjct: 355 ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKA 414

Query: 182 MVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD 241
           +VR      L   A  V      T + P+   L +   DS + +   AC + A+L  ++ 
Sbjct: 415 LVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC 474

Query: 242 VE-----QLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTD--------LVQA 288
            E       ++ TL         +   ++ D    L  +VG  + K +        L+Q 
Sbjct: 475 TELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQK 534

Query: 289 FQMLLKDSE----------AEVRAAAANKVRDFC----QNLDAYNQENIIMTYILPYVKD 334
           + ML KD +          + V  A  +    +C    Q      Q+ +    +     D
Sbjct: 535 WNML-KDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPD 593

Query: 335 LVADPNQHVKSALASVIMGLSPILGKH----NTVDHLLPLFLSQLKDECPEVRLNIISNL 390
               P++        ++ GL+  LG +        ++L L    ++D+ PEVR    S+ 
Sbjct: 594 QYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQ---SSF 650

Query: 391 DCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNA-LSIVELAEDSKWRVRLAII 449
             + ++       V+  I ++MP+L   L  EF     NA  +I E++     ++ + + 
Sbjct: 651 ALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEIS----IQMGIEMQ 706

Query: 450 EYMPLLAGQL 459
            Y+P++  QL
Sbjct: 707 PYIPMVLHQL 716


>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
 pdb|2BKU|B Chain B, Kap95p:rangtp Complex
 pdb|2BKU|D Chain D, Kap95p:rangtp Complex
 pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
           The Gtp- Bound Conformation: Implications For Nuclear
           Import Complex Assembly Dynamics
 pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
           The Gtp- Bound Conformation: Implications For Nuclear
           Import Complex Assembly Dynamics
          Length = 861

 Score = 30.8 bits (68), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 8/119 (6%)

Query: 438 EDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQ 497
           ED  W V ++    + L A   G    +  L  +      D+ +  REAA +    +++ 
Sbjct: 341 EDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADN-WRNREAAVMAFGSIMD- 398

Query: 498 FGSEWAQST-----VIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVL 551
            G +  Q T      +P ++ +  DQ+   + T  +CI  +A++   ++     LP V+
Sbjct: 399 -GPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVV 456


>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
          Length = 861

 Score = 30.4 bits (67), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 8/119 (6%)

Query: 438 EDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQ 497
           ED  W V ++    + L A   G    +  L  +      D+ +  REAA +    +++ 
Sbjct: 341 EDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADN-WRNREAAVMAFGSIMD- 398

Query: 498 FGSEWAQST-----VIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVL 551
            G +  Q T      +P ++ +  DQ+   + T  +CI  +A++   ++     LP V+
Sbjct: 399 -GPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVV 456


>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
 pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
          Length = 876

 Score = 29.6 bits (65), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 226 AVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDL 285
           A   C+ + S   + D+   V+P +++   +  WR R      F  + +   P   K  +
Sbjct: 347 AAGVCLMLLSTCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGSILEGPEPNQLKPLV 406

Query: 286 VQAFQM---LLKDSEAEVRAAAANKVRDFCQ 313
           +QA      L+KD    VR   A  V   C+
Sbjct: 407 IQAMPTLIELMKDPSVVVRDTTAWTVGRICE 437


>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
 pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
          Length = 462

 Score = 29.6 bits (65), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 3/91 (3%)

Query: 226 AVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDL 285
           A   C+ + +   + D+   V+P +++   +  WR R      F  + +   P   K  +
Sbjct: 347 AAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 406

Query: 286 VQAFQM---LLKDSEAEVRAAAANKVRDFCQ 313
           +QA      L+KD    VR  AA  V   C+
Sbjct: 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437


>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex
 pdb|1F59|B Chain B, Importin-Beta-Fxfg Nucleoporin Complex
 pdb|1O6P|A Chain A, Importin Beta Bound To A Glfg Nucleoporin Peptide
 pdb|1O6P|B Chain B, Importin Beta Bound To A Glfg Nucleoporin Peptide
 pdb|1O6O|A Chain A, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
           Yeast Nsp1p. Second Crystal Form
 pdb|1O6O|B Chain B, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
           Yeast Nsp1p. Second Crystal Form
 pdb|1O6O|C Chain C, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
           Yeast Nsp1p. Second Crystal Form
          Length = 442

 Score = 29.6 bits (65), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 3/91 (3%)

Query: 226 AVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDL 285
           A   C+ + +   + D+   V+P +++   +  WR R      F  + +   P   K  +
Sbjct: 347 AAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 406

Query: 286 VQAFQM---LLKDSEAEVRAAAANKVRDFCQ 313
           +QA      L+KD    VR  AA  V   C+
Sbjct: 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437


>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
           Bound To The Non-Classical Nls(67-94) Of Pthrp
          Length = 485

 Score = 29.3 bits (64), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 3/91 (3%)

Query: 226 AVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDL 285
           A   C+ + +   + D+   V+P +++   +  WR R      F  + +   P   K  +
Sbjct: 347 AAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 406

Query: 286 VQAFQM---LLKDSEAEVRAAAANKVRDFCQ 313
           +QA      L+KD    VR  AA  V   C+
Sbjct: 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437


>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
           Transport Complex
          Length = 890

 Score = 29.3 bits (64), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 14/75 (18%)

Query: 34  IKKLSTIALALGQERTRGELIPFLTETIYD---------EDEVLLALAEQLGTFTPNVG- 83
           +++ +  A A  +E    EL+P+L   I D         + + LL L + +GT   +VG 
Sbjct: 496 VQEAACSAFATLEEEACTELVPYLA-YILDTLVFAFSKYQHKNLLILYDAIGTLADSVGH 554

Query: 84  ---GPEYVHCLLPPL 95
               PEY+  L PPL
Sbjct: 555 HLNKPEYIQXLXPPL 569


>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
           Complex With The Ibb-Domain Of Snurportin1 (1-65)
          Length = 762

 Score = 28.9 bits (63), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 3/91 (3%)

Query: 226 AVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDL 285
           A   C+ + +   + D+   V+P +++   +  WR R      F  + +   P   K  +
Sbjct: 222 AAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 281

Query: 286 VQAFQM---LLKDSEAEVRAAAANKVRDFCQ 313
           +QA      L+KD    VR  AA  V   C+
Sbjct: 282 IQAMPTLIELMKDPSVVVRDTAAWTVGRICE 312


>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
           Importin Alpha
 pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
           Importin Alpha (Ii Crystal Form, Grown At Low Ph)
          Length = 876

 Score = 28.9 bits (63), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 3/91 (3%)

Query: 226 AVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDL 285
           A   C+ + +   + D+   V+P +++   +  WR R      F  + +   P   K  +
Sbjct: 347 AAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 406

Query: 286 VQAFQM---LLKDSEAEVRAAAANKVRDFCQ 313
           +QA      L+KD    VR  AA  V   C+
Sbjct: 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437


>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
           Snurportin1 Ibb- Domain
 pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
           Snurportin1 Ibb-Domain Second Crystal Form
 pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
           Snurportin1 Ibb-Domain Second Crystal Form
 pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
           Importin Beta Bound To The Snurportin1 Ibb-Domain
           Trapped In The Same Crystallographic Asymmetric Unit
 pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
           Importin Beta Bound To The Snurportin1 Ibb-Domain
           Trapped In The Same Crystallographic Asymmetric Unit
          Length = 876

 Score = 28.9 bits (63), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 3/91 (3%)

Query: 226 AVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDL 285
           A   C+ + +   + D+   V+P +++   +  WR R      F  + +   P   K  +
Sbjct: 347 AAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 406

Query: 286 VQAFQM---LLKDSEAEVRAAAANKVRDFCQ 313
           +QA      L+KD    VR  AA  V   C+
Sbjct: 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,331,727
Number of Sequences: 62578
Number of extensions: 620536
Number of successful extensions: 1795
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1533
Number of HSP's gapped (non-prelim): 82
length of query: 615
length of database: 14,973,337
effective HSP length: 105
effective length of query: 510
effective length of database: 8,402,647
effective search space: 4285349970
effective search space used: 4285349970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)