Query psy14014
Match_columns 615
No_of_seqs 221 out of 2236
Neff 10.9
Searched_HMMs 29240
Date Fri Aug 16 17:21:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14014.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14014hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b3u_A Protein (protein phosph 100.0 8.9E-62 3E-66 521.1 62.4 584 7-613 4-587 (588)
2 1b3u_A Protein (protein phosph 100.0 2.5E-46 8.5E-51 401.1 47.3 529 17-573 52-586 (588)
3 4fdd_A Transportin-1; heat rep 100.0 5.2E-35 1.8E-39 325.6 56.3 557 50-613 88-742 (852)
4 2bpt_A Importin beta-1 subunit 100.0 1.4E-34 4.7E-39 324.2 56.7 595 16-614 98-812 (861)
5 4fdd_A Transportin-1; heat rep 100.0 1.4E-33 4.9E-38 314.0 56.3 586 14-612 129-783 (852)
6 1u6g_C TIP120 protein, CAND1; 100.0 8.5E-35 2.9E-39 336.5 45.2 576 15-613 50-721 (1230)
7 1qgr_A Protein (importin beta 100.0 7.6E-33 2.6E-37 310.7 51.5 592 18-614 95-828 (876)
8 2bpt_A Importin beta-1 subunit 100.0 4.4E-32 1.5E-36 303.8 55.9 565 25-613 53-711 (861)
9 1u6g_C TIP120 protein, CAND1; 100.0 5.6E-33 1.9E-37 321.3 49.7 575 12-613 5-679 (1230)
10 1qgr_A Protein (importin beta 100.0 6.5E-31 2.2E-35 295.0 53.8 595 15-613 130-871 (876)
11 2vgl_B AP-2 complex subunit be 99.9 2E-24 6.7E-29 228.9 38.3 518 7-612 7-531 (591)
12 1ibr_B P95, importin beta-1 su 99.9 7.5E-23 2.6E-27 211.9 37.2 427 53-554 3-460 (462)
13 1jdh_A Beta-catenin; beta-cate 99.9 8.5E-22 2.9E-26 207.6 37.9 480 75-611 2-528 (529)
14 1ibr_B P95, importin beta-1 su 99.9 2.5E-21 8.5E-26 200.4 37.8 391 173-592 7-456 (462)
15 2z6g_A B-catenin; FULL-length, 99.9 2E-21 6.8E-26 211.9 37.7 493 93-613 118-663 (780)
16 2z6h_A Catenin beta-1, beta-ca 99.9 5.3E-21 1.8E-25 205.5 38.9 473 84-613 8-527 (644)
17 3now_A UNC-45 protein, SD10334 99.9 2.6E-19 8.9E-24 189.9 49.8 572 17-613 53-737 (810)
18 2jdq_A Importin alpha-1 subuni 99.9 4.9E-21 1.7E-25 197.4 33.8 384 208-612 22-442 (450)
19 1wa5_B Importin alpha subunit; 99.9 5.3E-21 1.8E-25 201.0 34.5 386 205-612 86-509 (530)
20 2z6g_A B-catenin; FULL-length, 99.9 7E-21 2.4E-25 207.6 35.9 520 14-577 116-666 (780)
21 3now_A UNC-45 protein, SD10334 99.9 2.5E-19 8.5E-24 190.1 45.1 579 14-613 93-782 (810)
22 2jdq_A Importin alpha-1 subuni 99.9 1E-20 3.4E-25 195.1 33.6 384 169-573 22-442 (450)
23 2vgl_B AP-2 complex subunit be 99.9 2.6E-20 9E-25 197.2 35.8 471 14-573 50-531 (591)
24 1wa5_B Importin alpha subunit; 99.9 1.8E-20 6.2E-25 196.9 33.3 386 169-575 89-511 (530)
25 4b8j_A Importin subunit alpha- 99.9 1.8E-19 6.1E-24 189.4 35.6 384 207-612 75-495 (528)
26 1w63_A Adapter-related protein 99.9 2.9E-19 1E-23 189.7 37.2 472 91-613 71-577 (618)
27 2z6h_A Catenin beta-1, beta-ca 99.9 7.9E-19 2.7E-23 188.6 40.6 501 14-593 15-546 (644)
28 4b8j_A Importin subunit alpha- 99.9 4E-19 1.4E-23 186.8 36.6 385 169-575 76-497 (528)
29 1jdh_A Beta-catenin; beta-cate 99.9 7.4E-19 2.5E-23 185.1 36.2 404 130-572 102-528 (529)
30 1w63_A Adapter-related protein 99.8 9.7E-18 3.3E-22 178.0 31.0 506 14-574 35-577 (618)
31 2vgl_A Adaptor protein complex 99.8 3.1E-16 1.1E-20 165.8 39.2 475 92-612 76-588 (621)
32 3ul1_B Importin subunit alpha- 99.8 7.8E-17 2.7E-21 167.5 32.6 383 208-611 59-476 (510)
33 3tpo_A Importin subunit alpha- 99.8 2.2E-16 7.4E-21 165.2 34.9 384 207-611 77-495 (529)
34 3ul1_B Importin subunit alpha- 99.8 5.7E-16 1.9E-20 161.0 35.8 383 171-574 61-478 (510)
35 3tpo_A Importin subunit alpha- 99.8 1.4E-15 4.6E-20 159.2 37.4 384 170-574 79-497 (529)
36 1wa5_C Importin alpha RE-expor 99.8 1.4E-14 4.6E-19 162.9 48.0 557 17-601 89-779 (960)
37 1wa5_C Importin alpha RE-expor 99.8 3.8E-14 1.3E-18 159.3 47.0 560 25-613 49-748 (960)
38 1oyz_A Hypothetical protein YI 99.7 6E-16 2E-20 148.1 23.9 252 92-391 25-278 (280)
39 1oyz_A Hypothetical protein YI 99.7 5.4E-16 1.9E-20 148.4 22.5 253 14-353 24-279 (280)
40 2x1g_F Cadmus; transport prote 99.7 2.8E-14 9.5E-19 161.1 36.4 503 53-614 9-616 (971)
41 2x1g_F Cadmus; transport prote 99.7 7.7E-13 2.6E-17 149.3 46.7 521 25-578 97-764 (971)
42 2vgl_A Adaptor protein complex 99.7 1.9E-13 6.6E-18 144.4 37.1 507 15-573 37-588 (621)
43 2x19_B Importin-13; nuclear tr 99.7 3.4E-12 1.2E-16 144.1 49.6 365 222-613 423-846 (963)
44 2x19_B Importin-13; nuclear tr 99.7 1.5E-12 5E-17 147.1 44.0 491 66-614 40-600 (963)
45 3m1i_C Exportin-1; heat repeat 99.6 2.2E-12 7.4E-17 146.3 42.6 514 52-614 17-619 (1049)
46 3ltj_A Alpharep-4; protein eng 99.6 1.7E-14 5.9E-19 130.3 20.6 184 166-393 13-196 (201)
47 3ltm_A Alpha-REP4; protein eng 99.6 1.3E-14 4.6E-19 132.2 19.5 183 169-395 21-203 (211)
48 2qk2_A LP04448P; mini spindles 99.6 2.4E-14 8.3E-19 133.4 21.2 187 172-362 20-211 (242)
49 2qk2_A LP04448P; mini spindles 99.6 1.2E-14 4.2E-19 135.4 18.5 195 242-462 12-210 (242)
50 3ltm_A Alpha-REP4; protein eng 99.6 9.8E-14 3.4E-18 126.4 19.6 189 205-460 18-206 (211)
51 3ltj_A Alpharep-4; protein eng 99.6 1.5E-13 5.3E-18 124.1 20.5 185 204-455 12-196 (201)
52 3ibv_A Exportin-T; karyopherin 99.6 2E-11 6.9E-16 135.3 40.1 555 25-591 102-788 (980)
53 3m1i_C Exportin-1; heat repeat 99.6 4.1E-11 1.4E-15 135.8 42.6 500 10-538 13-621 (1049)
54 4ady_A RPN2, 26S proteasome re 99.5 7.9E-11 2.7E-15 125.3 39.5 272 284-612 392-675 (963)
55 3ibv_A Exportin-T; karyopherin 99.5 7.4E-11 2.5E-15 130.8 41.2 436 143-592 57-583 (980)
56 3opb_A SWI5-dependent HO expre 99.5 9.8E-11 3.4E-15 122.1 38.3 478 33-536 152-729 (778)
57 4hxt_A De novo protein OR329; 99.5 1.7E-12 5.9E-17 121.8 23.0 228 169-397 4-243 (252)
58 3l6x_A Catenin delta-1; cateni 99.5 2.9E-11 1E-15 124.2 33.6 347 247-612 50-475 (584)
59 3opb_A SWI5-dependent HO expre 99.5 6.1E-10 2.1E-14 116.2 41.5 483 101-613 181-728 (778)
60 2qk1_A Protein STU2; STU2P, XM 99.5 7.3E-13 2.5E-17 122.7 17.6 199 205-404 15-229 (249)
61 1xm9_A Plakophilin 1; armadill 99.5 1.1E-11 3.8E-16 126.6 27.9 343 248-612 5-448 (457)
62 1xm9_A Plakophilin 1; armadill 99.5 1.9E-11 6.7E-16 124.8 29.2 363 208-574 4-449 (457)
63 4db8_A Armadillo-repeat protei 99.5 1.7E-12 6E-17 121.8 19.3 225 169-394 14-250 (252)
64 4hat_C Exportin-1; heat repeat 99.5 8.3E-09 2.8E-13 114.6 51.1 419 27-463 114-624 (1023)
65 3l6x_A Catenin delta-1; cateni 99.5 6.6E-11 2.3E-15 121.6 31.8 367 204-574 46-476 (584)
66 4ady_A RPN2, 26S proteasome re 99.5 3.8E-09 1.3E-13 112.6 45.8 331 218-611 370-717 (963)
67 2qk1_A Protein STU2; STU2P, XM 99.5 5.4E-12 1.8E-16 116.9 20.7 191 172-362 21-226 (249)
68 4hxt_A De novo protein OR329; 99.5 1.1E-11 3.7E-16 116.3 23.2 233 207-460 3-244 (252)
69 3nmz_A APC variant protein; pr 99.5 4.7E-11 1.6E-15 119.9 28.5 253 303-576 167-452 (458)
70 4hat_C Exportin-1; heat repeat 99.4 1.9E-09 6.6E-14 119.6 43.1 517 12-578 15-622 (1023)
71 4db8_A Armadillo-repeat protei 99.4 6.5E-12 2.2E-16 117.9 19.3 228 366-613 12-251 (252)
72 3nmz_A APC variant protein; pr 99.4 4.8E-10 1.6E-14 112.6 29.1 312 203-537 67-452 (458)
73 1lrv_A LRV, leucine-rich repea 99.4 1.4E-13 4.7E-18 125.3 2.1 187 173-492 56-242 (244)
74 4db6_A Armadillo repeat protei 99.3 1.2E-10 4.2E-15 105.7 18.6 189 167-356 12-209 (210)
75 4db6_A Armadillo repeat protei 99.3 1.3E-10 4.3E-15 105.6 17.1 183 431-613 15-209 (210)
76 2iw3_A Elongation factor 3A; a 99.2 3.8E-09 1.3E-13 114.1 28.8 244 147-397 70-326 (986)
77 2iw3_A Elongation factor 3A; a 99.2 7.9E-09 2.7E-13 111.7 30.7 298 14-357 15-325 (986)
78 1lrv_A LRV, leucine-rich repea 99.2 8.5E-12 2.9E-16 113.5 6.2 184 21-309 58-242 (244)
79 3a6p_A Exportin-5; exportin-5, 99.2 3.2E-08 1.1E-12 112.8 36.7 475 53-578 13-617 (1204)
80 3gjx_A Exportin-1; transport, 99.2 1.1E-06 3.7E-11 97.3 47.0 330 243-575 475-905 (1073)
81 3gjx_A Exportin-1; transport, 99.2 1E-06 3.6E-11 97.4 44.2 139 440-578 491-648 (1073)
82 3nmw_A APC variant protein; AR 99.2 4.7E-09 1.6E-13 102.2 22.5 255 302-577 50-337 (354)
83 1xqr_A HSPBP1 protein; armadil 99.1 1.3E-08 4.5E-13 96.2 21.8 175 182-357 55-239 (296)
84 1xqr_A HSPBP1 protein; armadil 99.1 1.7E-08 5.9E-13 95.4 21.7 182 431-612 84-286 (296)
85 2db0_A 253AA long hypothetical 99.0 1.6E-07 5.6E-12 77.5 23.0 214 166-394 31-245 (253)
86 3nmw_A APC variant protein; AR 99.0 2.7E-08 9.3E-13 96.8 22.1 222 258-497 97-335 (354)
87 2of3_A ZYG-9; multifunctional 99.0 1.4E-08 4.7E-13 92.7 18.7 135 439-579 98-241 (266)
88 3tjz_B Coatomer subunit gamma; 99.0 1.4E-08 4.9E-13 97.4 18.6 278 246-571 69-350 (355)
89 3tjz_B Coatomer subunit gamma; 99.0 1.1E-08 3.8E-13 98.1 17.8 291 160-494 61-351 (355)
90 2db0_A 253AA long hypothetical 99.0 2.9E-07 1E-11 76.1 22.8 215 364-612 30-245 (253)
91 4ffb_C Protein STU2; tubulin f 98.9 2.6E-08 8.8E-13 94.4 16.8 145 431-578 58-216 (278)
92 3oc3_A Helicase MOT1, MOT1; re 98.9 1E-08 3.6E-13 100.0 13.9 255 168-492 175-432 (800)
93 2of3_A ZYG-9; multifunctional 98.9 2.4E-07 8.3E-12 84.5 21.8 136 177-318 97-241 (266)
94 3a6p_A Exportin-5; exportin-5, 98.9 4E-06 1.4E-10 95.6 37.1 446 25-499 108-700 (1204)
95 3b2a_A TON_1937, putative unch 98.9 9E-07 3.1E-11 76.8 23.1 183 167-357 33-219 (265)
96 4ffb_C Protein STU2; tubulin f 98.9 1.4E-07 4.6E-12 89.4 19.6 186 173-361 15-217 (278)
97 3l9t_A Putative uncharacterize 98.9 4.4E-08 1.5E-12 86.0 14.3 139 204-357 69-208 (240)
98 1te4_A Conserved protein MTH18 98.8 6.5E-10 2.2E-14 92.0 1.9 120 205-353 11-130 (131)
99 3b2a_A TON_1937, putative unch 98.8 9.8E-07 3.3E-11 76.5 21.3 225 366-614 33-262 (265)
100 1te4_A Conserved protein MTH18 98.8 7E-10 2.4E-14 91.8 1.5 121 243-392 10-130 (131)
101 3l9t_A Putative uncharacterize 98.8 1.4E-07 4.9E-12 82.8 15.3 138 128-275 70-208 (240)
102 3oc3_A Helicase MOT1, MOT1; re 98.8 4.6E-07 1.6E-11 88.7 19.8 253 91-391 175-432 (800)
103 1vsy_5 Proteasome activator BL 98.4 2.3E-05 8E-10 86.1 23.1 388 158-577 499-969 (997)
104 1vsy_5 Proteasome activator BL 98.3 0.00066 2.3E-08 74.7 31.5 552 15-576 135-875 (997)
105 3grl_A General vesicular trans 98.1 0.0027 9.1E-08 65.0 27.9 326 173-535 28-394 (651)
106 3u0r_A Apoptosis inhibitor 5; 98.1 0.0038 1.3E-07 60.9 26.5 184 180-375 41-224 (507)
107 3grl_A General vesicular trans 98.0 0.0043 1.5E-07 63.5 26.0 228 366-611 122-392 (651)
108 3tt9_A Plakophilin-2; cell adh 97.9 0.00069 2.4E-08 60.9 16.7 186 170-356 11-229 (233)
109 4gmo_A Putative uncharacterize 97.8 0.045 1.5E-06 58.5 33.0 203 50-274 33-258 (684)
110 3u0r_A Apoptosis inhibitor 5; 97.8 0.036 1.2E-06 54.1 29.2 261 103-374 41-316 (507)
111 3tt9_A Plakophilin-2; cell adh 97.7 0.00047 1.6E-08 62.0 13.5 145 469-613 10-180 (233)
112 3o2t_A Symplekin; heat repeat, 97.3 0.12 4.2E-06 49.7 24.7 104 283-394 25-128 (386)
113 1lsh_A Lipovitellin (LV-1N, LV 96.9 0.067 2.3E-06 60.0 21.1 158 440-614 407-577 (1056)
114 1lsh_A Lipovitellin (LV-1N, LV 96.7 0.17 5.9E-06 56.7 22.9 128 246-390 392-538 (1056)
115 3gs3_A Symplekin, LD45768P; he 96.7 0.18 6.2E-06 45.7 18.6 129 161-315 47-175 (257)
116 3gs3_A Symplekin, LD45768P; he 96.2 0.66 2.3E-05 42.0 19.6 143 222-395 31-173 (257)
117 3o2t_A Symplekin; heat repeat, 96.2 0.17 5.7E-06 48.8 16.0 128 162-315 58-185 (386)
118 4gmo_A Putative uncharacterize 96.1 0.0097 3.3E-07 63.6 8.1 74 203-277 32-108 (684)
119 4atg_A TAF6; transcription, TF 95.6 0.38 1.3E-05 41.3 14.1 90 462-555 82-178 (196)
120 3ldz_A STAM-1, signal transduc 93.4 0.65 2.2E-05 37.7 9.9 80 282-361 40-119 (140)
121 2b6c_A Hypothetical protein EF 92.8 2.9 9.8E-05 37.0 14.2 131 209-357 58-189 (220)
122 1x5b_A Signal transducing adap 92.1 2.1 7.2E-05 35.6 11.6 101 254-360 28-129 (163)
123 3jxy_A Alkylpurine DNA glycosy 92.0 2 6.8E-05 38.4 12.2 156 135-309 67-223 (232)
124 3g2s_A C-terminal fragment of 91.3 1.8 6.2E-05 35.4 10.1 79 282-360 46-130 (149)
125 2b6c_A Hypothetical protein EF 90.9 2.1 7.1E-05 37.9 11.0 130 132-274 58-188 (220)
126 4atg_A TAF6; transcription, TF 90.7 7.3 0.00025 33.3 16.6 125 182-313 23-162 (196)
127 1upk_A MO25 protein; transfera 89.8 13 0.00044 34.8 19.4 126 471-596 168-313 (341)
128 1juq_A ADP-ribosylation factor 89.7 5.5 0.00019 33.4 11.9 101 254-360 26-132 (171)
129 1mhq_A ADP-ribosylation factor 89.6 7.4 0.00025 31.7 12.9 101 254-360 14-120 (148)
130 3zyq_A Hepatocyte growth facto 88.4 4.5 0.00015 35.8 11.1 102 254-361 21-123 (226)
131 1upk_A MO25 protein; transfera 88.3 17 0.00057 34.0 20.7 190 204-396 76-284 (341)
132 3jxy_A Alkylpurine DNA glycosy 88.0 7 0.00024 34.8 12.3 133 207-357 62-196 (232)
133 3ldz_A STAM-1, signal transduc 84.3 15 0.0005 29.6 12.3 84 205-288 41-128 (140)
134 3dad_A FH1/FH2 domain-containi 83.9 28 0.00096 32.5 14.6 145 433-577 123-289 (339)
135 3ut4_A CTHE_2751, putative unc 83.4 4.2 0.00014 32.1 7.2 25 507-531 32-56 (134)
136 1elk_A Target of MYB1; superhe 83.1 18 0.00062 29.7 12.7 100 254-359 29-133 (157)
137 1mhq_A ADP-ribosylation factor 82.1 19 0.00065 29.2 11.9 96 437-538 14-119 (148)
138 1x5b_A Signal transducing adap 80.3 24 0.00081 29.2 12.9 98 177-280 29-131 (163)
139 1dvp_A HRS, hepatocyte growth 78.7 17 0.00058 31.9 10.6 101 254-360 18-119 (220)
140 3dad_A FH1/FH2 domain-containi 77.5 39 0.0013 31.6 12.7 134 478-611 129-284 (339)
141 1vdy_A Hypothetical protein (R 73.9 9.5 0.00032 30.6 6.7 70 542-612 46-129 (140)
142 3ebb_A Phospholipase A2-activa 73.5 36 0.0012 31.5 11.7 106 507-612 148-262 (304)
143 1w9c_A CRM1 protein, exportin 70.4 69 0.0024 29.8 16.6 134 444-577 45-199 (321)
144 1t06_A Hypothetical protein; s 69.7 42 0.0014 29.7 10.9 70 206-275 108-181 (235)
145 3zyq_A Hepatocyte growth facto 66.4 68 0.0023 28.2 13.6 98 177-280 22-124 (226)
146 3ut4_A CTHE_2751, putative unc 66.3 46 0.0016 26.2 11.7 84 161-257 25-108 (134)
147 2fv2_A RCD1 required for cell 65.6 75 0.0026 28.4 13.0 67 90-156 101-172 (268)
148 1juq_A ADP-ribosylation factor 65.2 59 0.002 27.0 13.4 97 177-279 27-133 (171)
149 3rru_A TOM1L1 protein; structu 64.9 55 0.0019 26.6 10.0 101 254-360 29-134 (152)
150 2fv2_A RCD1 required for cell 62.9 84 0.0029 28.0 12.0 129 480-611 115-266 (268)
151 1vdy_A Hypothetical protein (R 59.0 57 0.0019 26.0 8.4 65 432-497 15-79 (140)
152 1elk_A Target of MYB1; superhe 53.5 91 0.0031 25.4 12.9 97 177-279 30-135 (157)
153 1ho8_A Vacuolar ATP synthase s 52.9 26 0.00089 34.6 6.7 55 180-234 418-475 (480)
154 1dvp_A HRS, hepatocyte growth 52.8 1.2E+02 0.004 26.5 12.1 75 205-279 41-120 (220)
155 2npp_B PP2A, B subunit, serine 52.4 1.8E+02 0.0061 28.5 20.6 223 167-395 162-399 (449)
156 3g2s_A C-terminal fragment of 48.2 1.1E+02 0.0037 24.7 13.7 72 168-239 49-130 (149)
157 1w9c_A CRM1 protein, exportin 48.1 1.7E+02 0.0059 27.1 17.0 60 257-316 134-199 (321)
158 3fga_B Serine/threonine-protei 45.9 2.1E+02 0.0073 27.5 22.5 224 168-395 130-366 (403)
159 3gae_A Protein DOA1; UFD3, CDC 45.1 1.7E+02 0.0058 26.1 11.3 96 517-612 101-216 (253)
160 3l3f_X Protein DOA1, DOA1/UFD3 34.2 16 0.00055 34.7 1.9 97 516-612 209-325 (362)
161 2jtt_C Calcyclin-binding prote 33.1 36 0.0012 19.6 2.5 25 168-192 8-32 (35)
162 3s4w_B Protein FACD2, fanconi 31.6 6.3E+02 0.022 28.8 14.7 147 130-277 401-552 (1323)
163 1ho8_A Vacuolar ATP synthase s 31.2 4E+02 0.014 26.3 26.4 69 507-575 396-477 (480)
164 3rru_A TOM1L1 protein; structu 29.5 2.2E+02 0.0076 22.9 10.2 107 177-289 30-145 (152)
165 3pst_A Protein DOA1; protein d 27.3 43 0.0015 32.6 3.5 96 517-612 273-388 (425)
166 2qzg_A Conserved uncharacteriz 27.0 1.8E+02 0.0062 21.1 7.1 13 246-258 61-73 (94)
167 2npp_B PP2A, B subunit, serine 25.5 4.9E+02 0.017 25.5 24.0 224 365-613 161-399 (449)
168 4f52_E Glomulin; cullin-ring E 23.8 6E+02 0.021 26.0 13.0 106 465-573 315-430 (596)
No 1
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=8.9e-62 Score=521.06 Aligned_cols=584 Identities=80% Similarity=1.209 Sum_probs=537.5
Q ss_pred CCCCCcchHHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcHHHHHHHHHHhccccCCCCCcc
Q psy14014 7 APDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPE 86 (615)
Q Consensus 7 ~~~~~~~~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~ 86 (615)
.+|+++++|..++..++|+|+..|..|++.+..++..+|++..+++++|++.+.++++++||..++++|+.+.+.++++.
T Consensus 4 ~~~~~~~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~~~~~ 83 (588)
T 1b3u_A 4 DGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPE 83 (588)
T ss_dssp CTTTSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGG
T ss_pred ccCCCcCcHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCcHH
Confidence 35889999999999999999999999999999999999988889999999998886666799999999999998887778
Q ss_pred hhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHH
Q psy14014 87 YVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKA 166 (615)
Q Consensus 87 ~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~ 166 (615)
+.+.+++.|..+..++++.||..|++++..++..++++.+.+.++|.+..+.++++...|..++.+++.++...++..++
T Consensus 84 ~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~ 163 (588)
T 1b3u_A 84 YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKA 163 (588)
T ss_dssp GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHH
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence 88999999999999999999999999999999999998888899999999999999999999999999999999988899
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhH
Q psy14014 167 ELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLV 246 (615)
Q Consensus 167 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 246 (615)
.+++.+..+++|+++.||..++++++.+++..+.+...+.++|.+..+++|+++.||..|+.+++.++..++++...+.+
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 243 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALV 243 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999998887777899999999999999999999999999999999988778889
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHH
Q psy14014 247 MPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMT 326 (615)
Q Consensus 247 ~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 326 (615)
+|.+.++++|++|.||.+++++++.++...+.+.....++|.+..+++|++++||..|+.+++.++..++++.....+.+
T Consensus 244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 323 (588)
T 1b3u_A 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS 323 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHH
Confidence 99999999999999999999999999998887665678999999999999999999999999999998876544445678
Q ss_pred hhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHH
Q psy14014 327 YILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRL 406 (615)
Q Consensus 327 ~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 406 (615)
.++|.+..+++|++|.||.+++.+++.++..+|.+...++++|.+..+++|++++||..++.+++.+....+.+.+.+..
T Consensus 324 ~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~ 403 (588)
T 1b3u_A 324 QILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSL 403 (588)
T ss_dssp THHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 89999999999999999999999999999999987777889999999999999999999999999998877754332222
Q ss_pred HHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHH
Q psy14014 407 AIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREA 486 (615)
Q Consensus 407 ~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~ 486 (615)
+ |.+.+.++|++|++|..++.+++.++..+|.+++.+.++|.+...+.|+++.||..
T Consensus 404 -----l------------------p~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~ 460 (588)
T 1b3u_A 404 -----L------------------PAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREA 460 (588)
T ss_dssp -----H------------------HHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHH
T ss_pred -----H------------------HHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 3 67777888999999999999999999999998877889999999999999999999
Q ss_pred HHHHHHHHHHHhChHHhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHH
Q psy14014 487 ATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVA 566 (615)
Q Consensus 487 a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~ 566 (615)
|+.+++.++..+|.++..+.++|.+..+..++++.+|..++.+++.+++.++...+.+.++|.+.++++|++++||..++
T Consensus 461 a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~ 540 (588)
T 1b3u_A 461 ATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVA 540 (588)
T ss_dssp HHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHH
Confidence 99999999999998877778999999999999999999999999999999998888899999999999999999999999
Q ss_pred HHHHHHhHhhhhhhHHhhHHHHHhhhcCCCCccHHHHHHHHHHHHhh
Q psy14014 567 KTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKYFAQEAISSIAD 613 (615)
Q Consensus 567 ~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~d~~v~~~a~~a~~~~~~ 613 (615)
++|+.+...++.....+.+.|.+..+.+|+|.+||..|..|++.+.+
T Consensus 541 ~~l~~l~~~~~~~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~~ 587 (588)
T 1b3u_A 541 KSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSL 587 (588)
T ss_dssp HHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhc
Confidence 99999999888776668899999999999999999999999998864
No 2
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=2.5e-46 Score=401.10 Aligned_cols=529 Identities=18% Similarity=0.234 Sum_probs=465.8
Q ss_pred HHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcH-HHHHHHHHHhccccCCCCCcchhhhchHHH
Q psy14014 17 VLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAEQLGTFTPNVGGPEYVHCLLPPL 95 (615)
Q Consensus 17 ~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~-~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l 95 (615)
.++....+++..+|..+.+.|+.+...++.......++|.+..+..+++ .||..+..+|+.++...+.+...+.++|.+
T Consensus 52 ~~L~~~~d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l 131 (588)
T 1b3u_A 52 PFLTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLV 131 (588)
T ss_dssp HHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 3344444788899999999999888777766577889999988887766 599999999999998765555567789999
Q ss_pred hhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCCh-hhHHHHHHHHHH
Q psy14014 96 ESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA-GVKAELRSHFRN 174 (615)
Q Consensus 96 ~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~-~~~~~l~~~l~~ 174 (615)
..+..+++..+|..++..+..+....+.. ..+.++|.+..+..|++..+|..++..++.+....+. .....++|.+..
T Consensus 132 ~~l~~~~~~~~R~~a~~~l~~~~~~~~~~-~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~ 210 (588)
T 1b3u_A 132 KRLAGGDWFTSRTSACGLFSVCYPRVSSA-VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSN 210 (588)
T ss_dssp HHHHTCSSHHHHHHHGGGHHHHTTTSCHH-HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHH
Confidence 99988889999999999999999888754 4677899999999999999999999999999888875 345778999999
Q ss_pred HhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhc
Q psy14014 175 LCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS 254 (615)
Q Consensus 175 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~ 254 (615)
+++|+++.||..++.+++.++...+++...+.++|.+..+++|+++.||..+..+++.++...+++.+.+.++|.+.+++
T Consensus 211 ~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l 290 (588)
T 1b3u_A 211 LASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLM 290 (588)
T ss_dssp HHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHh
Confidence 99999999999999999999998887777788999999999999999999999999999999988777788999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCcc----chhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHH
Q psy14014 255 GDTSWRVRYMVADKFTDLQKAVGPE----ITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILP 330 (615)
Q Consensus 255 ~d~~~~vR~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p 330 (615)
+|+++.||.+++.+++.++..++.+ ...+.++|.+..+++|+++.||.+++.+++.++..++.+ ...+.++|
T Consensus 291 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~l~p 366 (588)
T 1b3u_A 291 KDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD----NTIEHLLP 366 (588)
T ss_dssp TCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH----HHHHHTHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh----HHHHHHHH
Confidence 9999999999999999999988765 345689999999999999999999999999999877654 23567899
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHh
Q psy14014 331 YVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIE 410 (615)
Q Consensus 331 ~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~ 410 (615)
.+..+++|+++.||..++.+++.+...+|.+...+.++|.+.++++|.+|.+|..++.+++.+....|.+.+
T Consensus 367 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~-------- 438 (588)
T 1b3u_A 367 LFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF-------- 438 (588)
T ss_dssp HHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGC--------
T ss_pred HHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHH--------
Confidence 999999999999999999999999988887767778999999999999999999999998888766654321
Q ss_pred hhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHH
Q psy14014 411 YMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLN 490 (615)
Q Consensus 411 ~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~ 490 (615)
.+.+. |.+..+++|+++.+|..++.+++.++..+|.+++.+.++|.+..++.|+++.+|.+++.+
T Consensus 439 --------------~~~l~-~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~ 503 (588)
T 1b3u_A 439 --------------DEKLN-SLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFC 503 (588)
T ss_dssp --------------CHHHH-HHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHH
T ss_pred --------------HHHHH-HHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 11112 677888999999999999999999999999988888999999999999999999999999
Q ss_pred HHHHHHHhChHHhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHH
Q psy14014 491 LKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQ 570 (615)
Q Consensus 491 l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~ 570 (615)
++.++..+|.+.+.+.++|.+.++++|+++.+|..++.+++.+...+|.....+.+.|.+.++.+|++++||..++.+++
T Consensus 504 l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~ 583 (588)
T 1b3u_A 504 INVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALT 583 (588)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCchhHHHHHHHHHH
Confidence 99999999887777889999999999999999999999999999999988777889999999999999999999999998
Q ss_pred HHh
Q psy14014 571 KIG 573 (615)
Q Consensus 571 ~l~ 573 (615)
.+.
T Consensus 584 ~l~ 586 (588)
T 1b3u_A 584 VLS 586 (588)
T ss_dssp HTT
T ss_pred Hhh
Confidence 764
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=5.2e-35 Score=325.62 Aligned_cols=557 Identities=15% Similarity=0.138 Sum_probs=420.7
Q ss_pred hccchhhhhhhcCCcHH-HHHHHHHHhccccCCCCCcchhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHH--
Q psy14014 50 RGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDL-- 126 (615)
Q Consensus 50 ~~~ll~~l~~~~~~~~~-vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~-- 126 (615)
+..+.+.+.+.+.++++ ||..++.+++.+++.. .++.|+.+++.+.+.+.++++.+|..++.++..+++..++..-
T Consensus 88 ~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~-~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~ 166 (852)
T 4fdd_A 88 TDFIKSECLNNIGDSSPLIRATVGILITTIASKG-ELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSD 166 (852)
T ss_dssp HHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHT-TTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc-CccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchh
Confidence 33444555555666664 9999999999988753 4567899999999999999999999999999999998875421
Q ss_pred -----hhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhh---HHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHh
Q psy14014 127 -----EAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGV---KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVV 198 (615)
Q Consensus 127 -----~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~---~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~ 198 (615)
.+.++|.+..+..+++..+|..|+..+..+....+... ...+++.+..+++|+++.||+.++++++.+++..
T Consensus 167 ~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~ 246 (852)
T 4fdd_A 167 VLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVR 246 (852)
T ss_dssp SSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHC
T ss_pred hhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhC
Confidence 34578888888888888999999998887776555432 3567788888899999999999999999999876
Q ss_pred chh--hhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcCh----hhHHHhHHHHHHHhc-----------CC-----
Q psy14014 199 EVD--YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ----SDVEQLVMPTLRQCS-----------GD----- 256 (615)
Q Consensus 199 ~~~--~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~-----------~d----- 256 (615)
+.. .+...+++.+...++|.++.||..|++.+..+++.... ..+.+.++|.+.+.+ .|
T Consensus 247 ~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~ 326 (852)
T 4fdd_A 247 MDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGS 326 (852)
T ss_dssp HHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccc
Confidence 542 33457889999999999999999999999998764321 123445777776665 34
Q ss_pred ------CChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHH
Q psy14014 257 ------TSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILP 330 (615)
Q Consensus 257 ------~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p 330 (615)
.+|.+|.+++.+++.++...++. ..+.++|.+...++|+++.+|.+|+.+++.++...+.... .+.+.++|
T Consensus 327 ~~dd~~~~~~vr~~a~~~L~~la~~~~~~-~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~--~~l~~~l~ 403 (852)
T 4fdd_A 327 GGDDTISDWNLRKCSAAALDVLANVYRDE-LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMI--PYLPELIP 403 (852)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHG--GGHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHH--HHHHHHHH
Confidence 67899999999999999988854 4568899999999999999999999999999987654222 35688999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhhchhhcc---hhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhH--HHHH
Q psy14014 331 YVKDLVADPNQHVKSALASVIMGLSPILGK---HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ--WRVR 405 (615)
Q Consensus 331 ~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~---~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~ 405 (615)
.+...++|+++.||.+++++++.+++..+. ..+...++|.+.+.+.|.++.||..|+.+++.+.+..+..- +-..
T Consensus 404 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ 483 (852)
T 4fdd_A 404 HLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAY 483 (852)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHH
Confidence 999999999999999999999999987654 34566789999999999999999999999998886654321 0000
Q ss_pred H-----------------HHHhhhhhhhhcccc-----chhhhhhhhHHHH---HhhhcCCchHHHHHHHHhHHHHhhhC
Q psy14014 406 L-----------------AIIEYMPLLAGQLGV-----EFFDEKLNALSIV---ELAEDSKWRVRLAIIEYMPLLAGQLG 460 (615)
Q Consensus 406 ~-----------------~i~~~l~~l~~~~~~-----~~~~~~l~~~~i~---~~~~~~~~~vr~~~~~~l~~l~~~~~ 460 (615)
+ .+.+.+..++...|. +|+...+ |.+. ..+.+....+| .+++++..++..+|
T Consensus 484 ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~--p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g 560 (852)
T 4fdd_A 484 ILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLM--PPLIQKWNMLKDEDKDLF-PLLECLSSVATALQ 560 (852)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHH--HHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHH--HHHHHHHHhcccccHHHH-HHHHHHHHHHHHHh
Confidence 0 011222222222222 2333322 4444 23345566665 78999999999998
Q ss_pred hHh--HHHHHHHHHHHhcC-----------------CcchHHHHHHHHHHHHHHHHhChHHh----hhchhHHHHhhhcC
Q psy14014 461 VEF--FDEKLNALCMTWLV-----------------DHVYAIREAATLNLKKLVEQFGSEWA----QSTVIPKVVAMSRD 517 (615)
Q Consensus 461 ~~~--~~~~l~~~l~~~l~-----------------d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~i~~~l~~~~~d 517 (615)
..+ +.+.+++.+++.+. .++..+|.+++.+++.++..+|.++. ...+++.+...+.|
T Consensus 561 ~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~ 640 (852)
T 4fdd_A 561 SGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQD 640 (852)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCC
Confidence 754 23455554444332 22567899999999999999987532 14689999999999
Q ss_pred CCchHHHHHHHHHHHHHhhhChhh--HHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhh--hHHhhHHHHHhhhc
Q psy14014 518 QNYLHRMTCLFCINVLAEACGPTV--TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN--VIQSQVKPALDKLN 593 (615)
Q Consensus 518 ~~~~~R~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~l~ 593 (615)
+++.+|..+..+++.++..++... +.+.++|.+.+.+++..+.+|.+++++++.++...+.+ .+...+.+.+..++
T Consensus 641 ~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l 720 (852)
T 4fdd_A 641 KMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEII 720 (852)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHh
Confidence 999999999999999998887643 34678999999998889999999999999999887642 22233333333334
Q ss_pred CCC--CccHHHHHHHHHHHHhh
Q psy14014 594 GDT--DVDVKYFAQEAISSIAD 613 (615)
Q Consensus 594 ~d~--d~~v~~~a~~a~~~~~~ 613 (615)
+++ ...++++|..+++.++.
T Consensus 721 ~~~~~~~~~~~~a~~~igrl~~ 742 (852)
T 4fdd_A 721 NRPNTPKTLLENTAITIGRLGY 742 (852)
T ss_dssp TCSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHHHHHH
Confidence 444 45899999999998874
No 4
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=1.4e-34 Score=324.20 Aligned_cols=595 Identities=13% Similarity=0.070 Sum_probs=453.1
Q ss_pred HHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCc-H-HHHHHHHHHhccccCCCCC-----cchh
Q psy14014 16 AVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDE-D-EVLLALAEQLGTFTPNVGG-----PEYV 88 (615)
Q Consensus 16 ~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~-~-~vr~~a~~~l~~l~~~~~~-----~~~~ 88 (615)
..+++.+.++++.+|..+.+.++.++....+...|++++|.+.+.+.++ + .+|..+..+++.+.+..+. ..+.
T Consensus 98 ~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ 177 (861)
T 2bpt_A 98 TNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSS 177 (861)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGH
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHH
Confidence 3566788899999999999999999988766557899999999988876 5 4999999999888765432 2467
Q ss_pred hhchHHHhhhhcCc--hhHHHHHHHHHHHHHHhhcChh----HHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCCh
Q psy14014 89 HCLLPPLESLATVE--ETVVRDKAVESLRLISAQHSPH----DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA 162 (615)
Q Consensus 89 ~~l~~~l~~l~~~~--~~~vr~~a~~~l~~l~~~~~~~----~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~ 162 (615)
+.+++.+...+.++ +..||..+++++..+...+... ...+.+++.+.....+++..+|..++.++..+....++
T Consensus 178 ~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~ 257 (861)
T 2bpt_A 178 NNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYT 257 (861)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888887 7899999999999987665422 12356888888888888889999999888877654433
Q ss_pred h---hHH-HHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhch-------------------hhhHhhhHHHHHHhhcc--
Q psy14014 163 G---VKA-ELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV-------------------DYLKTDIIPMFVNLAQD-- 217 (615)
Q Consensus 163 ~---~~~-~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-------------------~~~~~~ll~~l~~~~~d-- 217 (615)
. ... .+++.+...+.|.+..+|..+++.+..+++.... ......++|.+...+.+
T Consensus 258 ~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~ 337 (861)
T 2bpt_A 258 FMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN 337 (861)
T ss_dssp GCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2 223 6777788888999999999999999998876421 11235678888777763
Q ss_pred -----CchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccc---hhhhHHHHH
Q psy14014 218 -----EQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEI---TKTDLVQAF 289 (615)
Q Consensus 218 -----~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~---~~~~l~~~l 289 (615)
+++.+|..+..++..++..+++ ...+.++|.+.+.+++++|++|.+++.+++.++...+.+. ..+.++|.+
T Consensus 338 ~d~~d~~~~~r~~a~~~L~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l 416 (861)
T 2bpt_A 338 EDPEDDDWNVSMSAGACLQLFAQNCGN-HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSI 416 (861)
T ss_dssp CC-CCCCCHHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHH
T ss_pred cccccccCcHHHHHHHHHHHHHHHccH-hHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3468999999999999998884 4567789999999999999999999999999986554221 234688999
Q ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc------hhh
Q psy14014 290 QMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK------HNT 363 (615)
Q Consensus 290 ~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~------~~~ 363 (615)
...++|+++.||..++.+++.++..+++......+.+.++|.+.+.++|. +.||..++.++..+++..+. ..+
T Consensus 417 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~ 495 (861)
T 2bpt_A 417 LNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNF 495 (861)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGG
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHH
Confidence 99999999999999999999999887653211235678889988888886 99999999999999887651 234
Q ss_pred hhhhHHHHHHhhcC--CChhHHHHHHHhhhHhhhhhchhHHH----------------------------------HHHH
Q psy14014 364 VDHLLPLFLSQLKD--ECPEVRLNIISNLDCVNEVIGIQQWR----------------------------------VRLA 407 (615)
Q Consensus 364 ~~~l~p~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~~~----------------------------------~~~~ 407 (615)
.+.+++.+.+.+++ .++.||..++++++.+....+..... .+..
T Consensus 496 ~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~ 575 (861)
T 2bpt_A 496 YPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSN 575 (861)
T ss_dssp HHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHH
Confidence 56778888888874 44789999999999887765532100 0001
Q ss_pred HHhhhhhhhhccccc---hhhhhhhhHHHHHhhhcCCc-hHHHHHHHHhHHHHhhhChHh--HHHHHHHHHHHhcCCcch
Q psy14014 408 IIEYMPLLAGQLGVE---FFDEKLNALSIVELAEDSKW-RVRLAIIEYMPLLAGQLGVEF--FDEKLNALCMTWLVDHVY 481 (615)
Q Consensus 408 i~~~l~~l~~~~~~~---~~~~~l~~~~i~~~~~~~~~-~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~ 481 (615)
+++.+..+...+|.. +....+ +.+...+++.++ .+|..++.+++.++...|.++ +.+.++|.+.+.++++++
T Consensus 576 ~~~~l~~l~~~~~~~~~~~~~~l~--~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~ 653 (861)
T 2bpt_A 576 ILTVLAAVIRKSPSSVEPVADMLM--GLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDS 653 (861)
T ss_dssp HHHHHHHHHHHCGGGTGGGHHHHH--HHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHH--HHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccH
Confidence 222233333334432 222222 566677777777 899999999999999888764 457899999999998899
Q ss_pred HHHHHHHHHHHHHHHHhChHH--hhhchhHHHHhhhcCCC--chHHHHHHHHHHHHHhhhChhh--HHHhhHHHHHhhCC
Q psy14014 482 AIREAATLNLKKLVEQFGSEW--AQSTVIPKVVAMSRDQN--YLHRMTCLFCINVLAEACGPTV--TANFLLPTVLNMAG 555 (615)
Q Consensus 482 ~vR~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~d~~--~~~R~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~ 555 (615)
.+|..++.+++.++..+|..+ +...++|.+.+.+.+++ +.+|..++.+++.++..++..+ +.+.++|.+.+.+.
T Consensus 654 ~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~ 733 (861)
T 2bpt_A 654 PVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQN 733 (861)
T ss_dssp HHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Confidence 999999999999999988643 34567888888887765 8899999999999999887754 35678888887765
Q ss_pred CCC-----------chHHHHHHHHHHHHhHhhh--hhhHHhh---HHHHHhhhcCCC----CccHHHHHHHHHHHHhhc
Q psy14014 556 DNV-----------ANVRFNVAKTLQKIGPILE--TNVIQSQ---VKPALDKLNGDT----DVDVKYFAQEAISSIADS 614 (615)
Q Consensus 556 D~~-----------~~vr~~a~~~l~~l~~~~~--~~~~~~~---~~~~l~~l~~d~----d~~v~~~a~~a~~~~~~~ 614 (615)
... ..+|..++.++..++...+ +..+.+. +.+.+.....|. +..||..|..+++.++..
T Consensus 734 ~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~ 812 (861)
T 2bpt_A 734 TKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAM 812 (861)
T ss_dssp CCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHH
Confidence 321 4689999999999987766 2333333 344444445563 889999999999998753
No 5
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=1.4e-33 Score=314.01 Aligned_cols=586 Identities=16% Similarity=0.125 Sum_probs=442.4
Q ss_pred hHHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcch-------hhccchhhhhhhcCCcH-HHHHHHHHHhccccCCCCC-
Q psy14014 14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQER-------TRGELIPFLTETIYDED-EVLLALAEQLGTFTPNVGG- 84 (615)
Q Consensus 14 ~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~-------~~~~ll~~l~~~~~~~~-~vr~~a~~~l~~l~~~~~~- 84 (615)
-+..+...+.++++..|..++..|+.+....++.. ..+.++|.+.+.+++++ .||..+..+++.++...+.
T Consensus 129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~ 208 (852)
T 4fdd_A 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQA 208 (852)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHH
Confidence 46777888999999999999999999998776541 14567788888888776 4999999999988864322
Q ss_pred -cchhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhh---hHHHHHHHhhcCCCcchhhhHHhhhhhhccCC
Q psy14014 85 -PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEA---HFVPLVQRLASGDWFTSRTSACGLFSVCYPRV 160 (615)
Q Consensus 85 -~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~---~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~ 160 (615)
..+.+.+++.+..++.|+++.||..++.++..+++..++ .+.. .+++.+.....+++..+|..|+..+..++...
T Consensus 209 ~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~-~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~ 287 (852)
T 4fdd_A 209 LMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMD-RLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQP 287 (852)
T ss_dssp HHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHH-HHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcch
Confidence 234557788888888999999999999999999987654 2222 36777777778888889999998877776542
Q ss_pred C-----hhhHHHHHHHHHHHh-----------CC-----------CChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHH
Q psy14014 161 T-----AGVKAELRSHFRNLC-----------QD-----------DTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVN 213 (615)
Q Consensus 161 ~-----~~~~~~l~~~l~~l~-----------~d-----------~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~ 213 (615)
. ......++|.+...+ +| .+|.+|+.++.+++.++...++ ...+.++|.+.+
T Consensus 288 ~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~-~~~~~l~~~l~~ 366 (852)
T 4fdd_A 288 ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD-ELLPHILPLLKE 366 (852)
T ss_dssp THHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHH
Confidence 1 123446677776665 44 5688999999999999998875 456678999999
Q ss_pred hhccCchhHHHHHHHHHHHHHhhcChh--hHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCcc---chhhhHHHH
Q psy14014 214 LAQDEQDSVRLLAVEACVSIASLLSQS--DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPE---ITKTDLVQA 288 (615)
Q Consensus 214 ~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~ 288 (615)
.++|+++.+|.+|+.+++.+++..++. .+.+.++|.+..+++|+++.||.+++.+++.++...+.. .....+++.
T Consensus 367 ~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~ 446 (852)
T 4fdd_A 367 LLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTE 446 (852)
T ss_dssp HHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 999999999999999999998877642 345678999999999999999999999999999876532 234678899
Q ss_pred HHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc----hhhh
Q psy14014 289 FQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK----HNTV 364 (615)
Q Consensus 289 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~----~~~~ 364 (615)
+...++|.++.||..|+.+++.++...++... .+.+.+++.+...+++.+......+..+++.++...|. ..+.
T Consensus 447 L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~--~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~ 524 (852)
T 4fdd_A 447 LLKRILDSNKRVQEAACSAFATLEEEACTELV--PYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI 524 (852)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGG--GGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhH--hHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHH
Confidence 99999999999999999999999988765432 35688888888888877777777888899888877664 3467
Q ss_pred hhhHHHHHH---hhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHH----hh
Q psy14014 365 DHLLPLFLS---QLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVE----LA 437 (615)
Q Consensus 365 ~~l~p~l~~---~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~----~~ 437 (615)
+.++|.+.+ .+.|.+++++ .++++++.++...|.. +.+.. -.+++.+...+. +.+....... ..
T Consensus 525 ~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~-~~~~~--~~i~~~~~~~l~-----~~l~~~~~~~~~~~~~ 595 (852)
T 4fdd_A 525 QMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSG-FLPYC--EPVYQRCVNLVQ-----KTLAQAMLNNAQPDQY 595 (852)
T ss_dssp HHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGG-GHHHH--HHHHHHHHHHHH-----HHHHHHHHHHHCTTTS
T ss_pred HHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHh-HHHHH--HHHHHHHHHHHH-----HHHHHHHHhhcCCccc
Confidence 788888874 5567677775 7889998888877753 22111 011111110000 0000000000 11
Q ss_pred hcCCchHHHHHHHHhHHHHhhhChHhH----HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHH--hhhchhHHH
Q psy14014 438 EDSKWRVRLAIIEYMPLLAGQLGVEFF----DEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEW--AQSTVIPKV 511 (615)
Q Consensus 438 ~~~~~~vr~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~i~~~l 511 (615)
..++..+|..++..++.+++.+|.++. .+.+++.++..+.|++..||..+..+++.++..++..+ +.+.++|.+
T Consensus 596 ~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l 675 (852)
T 4fdd_A 596 EAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPIL 675 (852)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 123556899999999999999987642 14679999999999999999999999999999887653 235688999
Q ss_pred HhhhcCCCchHHHHHHHHHHHHHhhhChh--hHHHhhHHHHHhhCCCCC--chHHHHHHHHHHHHhHhhhh---hhHHhh
Q psy14014 512 VAMSRDQNYLHRMTCLFCINVLAEACGPT--VTANFLLPTVLNMAGDNV--ANVRFNVAKTLQKIGPILET---NVIQSQ 584 (615)
Q Consensus 512 ~~~~~d~~~~~R~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~D~~--~~vr~~a~~~l~~l~~~~~~---~~~~~~ 584 (615)
.+.+.++++.+|.++++++|.++...+.+ .+.+.+++.|.+.+++++ ..++.+++.++++++...+. +...+.
T Consensus 676 ~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~ 755 (852)
T 4fdd_A 676 GTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQF 755 (852)
T ss_dssp HHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHH
T ss_pred HHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHH
Confidence 99888889999999999999999888754 245678888888877764 48999999999999987543 334445
Q ss_pred HHHHHhhhcCCCCccHHHHHHHHHHHHh
Q psy14014 585 VKPALDKLNGDTDVDVKYFAQEAISSIA 612 (615)
Q Consensus 585 ~~~~l~~l~~d~d~~v~~~a~~a~~~~~ 612 (615)
+.+.+..|..-.|.+.|..|..++-.+-
T Consensus 756 ~~~~~~~l~~~~d~~e~~~a~~~l~~li 783 (852)
T 4fdd_A 756 IRPWCTSLRNIRDNEEKDSAFRGICTMI 783 (852)
T ss_dssp HHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 5555666655567777888888876653
No 6
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=8.5e-35 Score=336.45 Aligned_cols=576 Identities=12% Similarity=0.145 Sum_probs=448.5
Q ss_pred HHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcH-HHHHHHHHHhccccCCCCCc--------
Q psy14014 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAEQLGTFTPNVGGP-------- 85 (615)
Q Consensus 15 i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~-~vr~~a~~~l~~l~~~~~~~-------- 85 (615)
+..+++.+.++++.+|..|++.|+.++..++++ ..+.+++.+...+.|++ .+|..++.+|+.++..++..
T Consensus 50 l~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~-~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~ 128 (1230)
T 1u6g_C 50 VKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY-QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAA 128 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH-HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHH
Confidence 566778899999999999999999999877664 67788888888777766 59999999999998766543
Q ss_pred chhhhchHHHhhhhc-CchhHHHHHHHHHHHHHHhhcChhH--HhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCCh
Q psy14014 86 EYVHCLLPPLESLAT-VEETVVRDKAVESLRLISAQHSPHD--LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA 162 (615)
Q Consensus 86 ~~~~~l~~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~ 162 (615)
.+++.++|.|...+. +++..+|..|+.++..+++..++.. ..+.+++.+.....++...+|..++..++.+....++
T Consensus 129 ~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~ 208 (1230)
T 1u6g_C 129 NVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN 208 (1230)
T ss_dssp HHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH
Confidence 378999999998887 4788999999999999997665411 2345677777777777788999999999999888766
Q ss_pred hhHHHHHHHHHHHhC-CCChHHHHHHHHhHHHHHHHhchh--hhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcCh
Q psy14014 163 GVKAELRSHFRNLCQ-DDTPMVRRAAAGKLGELAKVVEVD--YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ 239 (615)
Q Consensus 163 ~~~~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~ 239 (615)
.....+++.+...+. +.++.+|..++++++.++...+.. .+...++|.+.+.++|+++.+|..++.+++.+++..+.
T Consensus 209 ~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~ 288 (1230)
T 1u6g_C 209 IVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK 288 (1230)
T ss_dssp --CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChH
Confidence 555556665555443 334678999999999999987753 23568999999999999999999999999999998876
Q ss_pred h--hHHHhHHHHHHHhcC-------------------------------------CCChHHHHHHHHHHHHHHHHhCc--
Q psy14014 240 S--DVEQLVMPTLRQCSG-------------------------------------DTSWRVRYMVADKFTDLQKAVGP-- 278 (615)
Q Consensus 240 ~--~~~~~l~~~l~~~~~-------------------------------------d~~~~vR~~~~~~l~~l~~~~~~-- 278 (615)
+ .+.+.++|.+.+.+. |.+|.+|.+++.+++.++...+.
T Consensus 289 ~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~ 368 (1230)
T 1u6g_C 289 EVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEML 368 (1230)
T ss_dssp CCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHH
Confidence 4 355667777655432 23589999999999999986554
Q ss_pred cchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcccc-----------------chhHHHHHhhHHHHHHhhCCCCH
Q psy14014 279 EITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAY-----------------NQENIIMTYILPYVKDLVADPNQ 341 (615)
Q Consensus 279 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~-----------------~~~~~~~~~l~p~l~~~~~d~~~ 341 (615)
......++|.+...+.|.+++||..++.++..++...+.. ..-..+.+.++|.+.+.++|++|
T Consensus 369 ~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~ 448 (1230)
T 1u6g_C 369 PEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSV 448 (1230)
T ss_dssp HHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCH
Confidence 2234578899999999999999999999999988765431 01123566778888888999999
Q ss_pred HHHHHHHHHHHhhchhhcc--hhhhhhhHHHHHHhhcCCCh--hHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhh
Q psy14014 342 HVKSALASVIMGLSPILGK--HNTVDHLLPLFLSQLKDECP--EVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAG 417 (615)
Q Consensus 342 ~vR~~~~~~l~~l~~~~g~--~~~~~~l~p~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~ 417 (615)
.+|.+++.+++.++...+. ..+.+.++|.+...++|.++ .++..++..+..+.+..+.+.+... ++
T Consensus 449 ~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~------l~---- 518 (1230)
T 1u6g_C 449 KTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPH------VQ---- 518 (1230)
T ss_dssp HHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHH------HT----
T ss_pred HHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhH------HH----
Confidence 9999999999999877543 23567889999999999765 8999999988888766654432221 11
Q ss_pred ccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhCh---------HhHHHHHHHHHHHhc--CCcchHHHHH
Q psy14014 418 QLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGV---------EFFDEKLNALCMTWL--VDHVYAIREA 486 (615)
Q Consensus 418 ~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~---------~~~~~~l~~~l~~~l--~d~~~~vR~~ 486 (615)
..+ |.+...++|++|++|..++..++.+++.+|. ..+.+.++|.++..+ .|.+..+|..
T Consensus 519 --------~ll--p~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~ 588 (1230)
T 1u6g_C 519 --------ALV--PPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKER 588 (1230)
T ss_dssp --------TTH--HHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHH
T ss_pred --------HHH--HHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHH
Confidence 111 6777888999999999999999999998876 235678999999988 7888999999
Q ss_pred HHHHHHHHHHHhChHHh--hhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhh---ChhhHHHhhHHHHHhhCCCCCchH
Q psy14014 487 ATLNLKKLVEQFGSEWA--QSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEAC---GPTVTANFLLPTVLNMAGDNVANV 561 (615)
Q Consensus 487 a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~---~~~~~~~~i~~~l~~~~~D~~~~v 561 (615)
|+.+++.++...|..+. ...+++.+.+.+.+ ...|..++++++.++... +...+.+.++|.+...+.|.+..+
T Consensus 589 a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~--e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~ 666 (1230)
T 1u6g_C 589 AISCMGQIICNLGDNLGSDLPNTLQIFLERLKN--EITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRAL 666 (1230)
T ss_dssp HHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTS--SSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHH
T ss_pred HHHHHHHHHHHhCchhhhhHHHHHHHHHHHhcc--chhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHH
Confidence 99999999999887532 24456666555543 347999999999988643 224567889999999999999999
Q ss_pred HHHHHHHHHHHhHhhhhhhHHhhHHHHHhhh---cCCCCccHHHHHHHHHHHHhh
Q psy14014 562 RFNVAKTLQKIGPILETNVIQSQVKPALDKL---NGDTDVDVKYFAQEAISSIAD 613 (615)
Q Consensus 562 r~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l---~~d~d~~v~~~a~~a~~~~~~ 613 (615)
|.+++.+++.++...+.....+.+.+++..+ .+|.|.+++..+..++..+.+
T Consensus 667 r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~ 721 (1230)
T 1u6g_C 667 KLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAK 721 (1230)
T ss_dssp HHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHH
Confidence 9999999999998876544456677777654 578899999999988887753
No 7
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=7.6e-33 Score=310.65 Aligned_cols=592 Identities=14% Similarity=0.105 Sum_probs=444.5
Q ss_pred HHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCc--H-HHHHHHHHHhccccCCCCC---cchhhhc
Q psy14014 18 LIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDE--D-EVLLALAEQLGTFTPNVGG---PEYVHCL 91 (615)
Q Consensus 18 ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~--~-~vr~~a~~~l~~l~~~~~~---~~~~~~l 91 (615)
++..+.++++.. ..++..++.++...++...|++++|.+.+.++++ + .+|..+..+++.+.+...+ ..+.+.+
T Consensus 95 ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~l 173 (876)
T 1qgr_A 95 VLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEI 173 (876)
T ss_dssp HHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHH
T ss_pred HHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHH
Confidence 667788888778 8999999999988777558999999999988776 6 4999999999988865432 3456778
Q ss_pred hHHHhhhhcCc--hhHHHHHHHHHHHHHHhhcChh----HHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhh-
Q psy14014 92 LPPLESLATVE--ETVVRDKAVESLRLISAQHSPH----DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGV- 164 (615)
Q Consensus 92 ~~~l~~l~~~~--~~~vr~~a~~~l~~l~~~~~~~----~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~- 164 (615)
++.+.+.+.++ +..+|..|+.++..++..++.. .....+++.+.....+++..+|..++.++..+.....+..
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 253 (876)
T 1qgr_A 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME 253 (876)
T ss_dssp HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCH
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence 88888888776 6899999999999988765432 1223578888888878788899999988887765543322
Q ss_pred --HH-HHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhch-----------------------hhhHhhhHHHHHHhhc--
Q psy14014 165 --KA-ELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV-----------------------DYLKTDIIPMFVNLAQ-- 216 (615)
Q Consensus 165 --~~-~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-----------------------~~~~~~ll~~l~~~~~-- 216 (615)
.. .+++.+.....+.++.||..+++.+..+++.... ......++|.+.+.+.
T Consensus 254 ~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~ 333 (876)
T 1qgr_A 254 TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ 333 (876)
T ss_dssp HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcc
Confidence 23 6778888888899999999999999988875310 0112467777777664
Q ss_pred -----cCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCcc---chhhhHHHH
Q psy14014 217 -----DEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPE---ITKTDLVQA 288 (615)
Q Consensus 217 -----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~ 288 (615)
|+++.+|.+|..++..++..+++ ...+.++|.+...+.|++|++|.+++.+++.++...+.+ .....++|.
T Consensus 334 ~~d~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~ 412 (876)
T 1qgr_A 334 DENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPT 412 (876)
T ss_dssp CSSCCTTCCCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHHHHCcH-hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 45688999999999999999885 456788999999999999999999999999998765522 123568999
Q ss_pred HHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhc---------
Q psy14014 289 FQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILG--------- 359 (615)
Q Consensus 289 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g--------- 359 (615)
+...++|+++.||..|+.+++.++..+++......+.+.++|.+...++|. +.||..++.+++.++...+
T Consensus 413 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~ 491 (876)
T 1qgr_A 413 LIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQ 491 (876)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 999999999999999999999999987653211235678889988888885 9999999999999988765
Q ss_pred -------chhhhhhhHHHHHHhhcCC---ChhHHHHHHHhhhHhhhhhchhHHH--------------------------
Q psy14014 360 -------KHNTVDHLLPLFLSQLKDE---CPEVRLNIISNLDCVNEVIGIQQWR-------------------------- 403 (615)
Q Consensus 360 -------~~~~~~~l~p~l~~~l~d~---~~~vr~~a~~~l~~l~~~~~~~~~~-------------------------- 403 (615)
-..+.+.++|.+.+.+.+. +..+|..++++++.++...|.+...
T Consensus 492 ~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~ 571 (876)
T 1qgr_A 492 EEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQST 571 (876)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCST
T ss_pred ccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence 1245677899999988764 4689999999988887765432100
Q ss_pred -------H-HHHHHhhhhhhhhccc-cc---hhhhhhhhHHHHHhhhcCC--chHHHHHHHHhHHHHhhhChHh--HHHH
Q psy14014 404 -------V-RLAIIEYMPLLAGQLG-VE---FFDEKLNALSIVELAEDSK--WRVRLAIIEYMPLLAGQLGVEF--FDEK 467 (615)
Q Consensus 404 -------~-~~~i~~~l~~l~~~~~-~~---~~~~~l~~~~i~~~~~~~~--~~vr~~~~~~l~~l~~~~~~~~--~~~~ 467 (615)
. +..+...+..+...+| .. +....+ |.+...+++.. +.+|..++.+++.++...|..+ +.+.
T Consensus 572 ~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~--~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 649 (876)
T 1qgr_A 572 SDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVM--ASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEA 649 (876)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHH--HHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHH--HHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 0 0011223333444444 22 222222 56666666654 6899999999999998887654 4577
Q ss_pred HHHHHHHhcCCc-chHHHHHHHHHHHHHHHHhChHH--hhhchhHHHHhhhcC--CCchHHHHHHHHHHHHHhhhChhh-
Q psy14014 468 LNALCMTWLVDH-VYAIREAATLNLKKLVEQFGSEW--AQSTVIPKVVAMSRD--QNYLHRMTCLFCINVLAEACGPTV- 541 (615)
Q Consensus 468 l~~~l~~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~d--~~~~~R~~a~~~l~~l~~~~~~~~- 541 (615)
++|.+...+.+. ++.+|..|+.+++.++..+|... +.+.+++.+.+.+.+ .+..+|..++.+++.++..+|+++
T Consensus 650 ~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~ 729 (876)
T 1qgr_A 650 FKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFK 729 (876)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHH
Confidence 889999998887 88999999999999999887643 235688888887776 467899999999999999887764
Q ss_pred -HHHhhHHHHHhhCCCCC-----------chHHHHHHHHHHHHhHhhhh---------hh---HHhhHHHHHhhhcCCC-
Q psy14014 542 -TANFLLPTVLNMAGDNV-----------ANVRFNVAKTLQKIGPILET---------NV---IQSQVKPALDKLNGDT- 596 (615)
Q Consensus 542 -~~~~i~~~l~~~~~D~~-----------~~vr~~a~~~l~~l~~~~~~---------~~---~~~~~~~~l~~l~~d~- 596 (615)
+.+.++|.+.+.+.++. ..+|..+..++..++...+. .. +.+.+.+.+..+..|+
T Consensus 730 ~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~ 809 (876)
T 1qgr_A 730 KYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDED 809 (876)
T ss_dssp GGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35678888887766442 27999999999988877653 12 2334445555555676
Q ss_pred -CccHHHHHHHHHHHHhhc
Q psy14014 597 -DVDVKYFAQEAISSIADS 614 (615)
Q Consensus 597 -d~~v~~~a~~a~~~~~~~ 614 (615)
+..||..|..+++.+.+.
T Consensus 810 ~~~~vr~~a~~~l~~l~~~ 828 (876)
T 1qgr_A 810 HTDGVVACAAGLIGDLCTA 828 (876)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 789999999999998753
No 8
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=4.4e-32 Score=303.83 Aligned_cols=565 Identities=13% Similarity=0.128 Sum_probs=428.6
Q ss_pred ccHHHHHHHHhcHHHHH---------------HH-hCcchhhccchhhhhhhcCCcH-HHHHHHHHHhccccCCCCCcch
Q psy14014 25 EDVQLRLNSIKKLSTIA---------------LA-LGQERTRGELIPFLTETIYDED-EVLLALAEQLGTFTPNVGGPEY 87 (615)
Q Consensus 25 ~d~~~R~~a~~~l~~~~---------------~~-~~~~~~~~~ll~~l~~~~~~~~-~vr~~a~~~l~~l~~~~~~~~~ 87 (615)
.++.+|..|...|.... .. ++++ .+..+.+.+.+.+.+++ .+|..++.+++.++........
T Consensus 53 ~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~-~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~ 131 (861)
T 2bpt_A 53 TKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPE-AKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGA 131 (861)
T ss_dssp SCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTC
T ss_pred CChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCHH-HHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccc
Confidence 36778887777766652 22 4333 55556666666666655 4999999999998864322246
Q ss_pred hhhchHHHhhhhcCc-hhHHHHHHHHHHHHHHhhcChh-----HHhhhHHHHHHHhhcCC--CcchhhhHHhhhhhhccC
Q psy14014 88 VHCLLPPLESLATVE-ETVVRDKAVESLRLISAQHSPH-----DLEAHFVPLVQRLASGD--WFTSRTSACGLFSVCYPR 159 (615)
Q Consensus 88 ~~~l~~~l~~l~~~~-~~~vr~~a~~~l~~l~~~~~~~-----~~~~~~l~~l~~l~~~~--~~~~r~~a~~~l~~~~~~ 159 (615)
|+.++|.|...+.++ ++.+|..++.++..+++.++++ ...+.+++.+.....++ +..+|..++..++.+...
T Consensus 132 w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~ 211 (861)
T 2bpt_A 132 WPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIF 211 (861)
T ss_dssp CHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGG
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 889999999998888 8999999999999999877643 23445777777777776 678999999988876554
Q ss_pred CChh-----hHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchh--hhHh-hhHHHHHHhhccCchhHHHHHHHHHH
Q psy14014 160 VTAG-----VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD--YLKT-DIIPMFVNLAQDEQDSVRLLAVEACV 231 (615)
Q Consensus 160 ~~~~-----~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~-~ll~~l~~~~~d~~~~vr~~a~~~l~ 231 (615)
+... .++.+++.+...+.++++.+|+.++++++.++...+.. .... .+++.+...++|.++.+|..|++.+.
T Consensus 212 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~ 291 (861)
T 2bpt_A 212 IKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWS 291 (861)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 4322 24568888888889999999999999999999877652 2334 78888888889999999999999999
Q ss_pred HHHhhcCh-------------------hhHHHhHHHHHHHhcC-------CCChHHHHHHHHHHHHHHHHhCccchhhhH
Q psy14014 232 SIASLLSQ-------------------SDVEQLVMPTLRQCSG-------DTSWRVRYMVADKFTDLQKAVGPEITKTDL 285 (615)
Q Consensus 232 ~l~~~~~~-------------------~~~~~~l~~~l~~~~~-------d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l 285 (615)
.+++.... ....+.++|.+...+. |.+|.+|.++..+++.++..++.. ....+
T Consensus 292 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~-~~~~l 370 (861)
T 2bpt_A 292 TICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH-ILEPV 370 (861)
T ss_dssp HHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG-GHHHH
T ss_pred HHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHh-HHHHH
Confidence 98876421 1223567788777665 346899999999999999988854 35678
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc----h
Q psy14014 286 VQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK----H 361 (615)
Q Consensus 286 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~----~ 361 (615)
++.+.+.+.+.++.+|.+|+.+++.++....+... ..+.+.++|.+...+.|+++.||.+++++++.++...+. .
T Consensus 371 ~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~-~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 449 (861)
T 2bpt_A 371 LEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQR-TYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQ 449 (861)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHH-HHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTT
T ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCH
Confidence 89999999999999999999999999876542211 245678899999999999999999999999999988764 3
Q ss_pred hhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhch---hHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhh
Q psy14014 362 NTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGI---QQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAE 438 (615)
Q Consensus 362 ~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~ 438 (615)
.+.+.++|.+.+.++|+ +.||..++.++..+.+..++ ..+. .|+.+.+ +.+...++
T Consensus 450 ~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~------------------~~~~~il--~~L~~~l~ 508 (861)
T 2bpt_A 450 QHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIY------------------NFYPALV--DGLIGAAN 508 (861)
T ss_dssp TTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGG------------------GGHHHHH--HHHHHHHT
T ss_pred HHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhH------------------HHHHHHH--HHHHHHHh
Confidence 45778899999999886 89999999999888766541 1110 1121222 45666665
Q ss_pred --cCCchHHHHHHHHhHHHHhhhChHh--HHHHHHHHHHHhcCC---------------cchHHHHHHHHHHHHHHHHhC
Q psy14014 439 --DSKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNALCMTWLVD---------------HVYAIREAATLNLKKLVEQFG 499 (615)
Q Consensus 439 --~~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d---------------~~~~vR~~a~~~l~~l~~~~~ 499 (615)
|.++.+|..++++++.++...|.+. +.+.++|.+++.+.+ ....+|..++.+++.++..+|
T Consensus 509 ~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 588 (861)
T 2bpt_A 509 RIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSP 588 (861)
T ss_dssp CSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred CcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3448999999999999999888653 345677777666542 356789999999999999988
Q ss_pred hHH--hhhchhHHHHhhhcCCCc-hHHHHHHHHHHHHHhhhChhh--HHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhH
Q psy14014 500 SEW--AQSTVIPKVVAMSRDQNY-LHRMTCLFCINVLAEACGPTV--TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGP 574 (615)
Q Consensus 500 ~~~--~~~~i~~~l~~~~~d~~~-~~R~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~ 574 (615)
... +.+.+++.+...+++.++ .+|..++.+++.++...+..+ +.+.++|.+...++++++.+|..++.+++.+..
T Consensus 589 ~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~ 668 (861)
T 2bpt_A 589 SSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISN 668 (861)
T ss_dssp GGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 742 345688888888888877 899999999999998887654 356789999998899999999999999999998
Q ss_pred hhhhh--hHHhhHHHHHhhhcCCC--CccHHHHHHHHHHHHhh
Q psy14014 575 ILETN--VIQSQVKPALDKLNGDT--DVDVKYFAQEAISSIAD 613 (615)
Q Consensus 575 ~~~~~--~~~~~~~~~l~~l~~d~--d~~v~~~a~~a~~~~~~ 613 (615)
..+.. .+...+.+.+...+.++ |.++|..+..+++.++.
T Consensus 669 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~ 711 (861)
T 2bpt_A 669 SLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIAS 711 (861)
T ss_dssp HTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHH
T ss_pred HhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHH
Confidence 77642 12233333333333343 58999999999998875
No 9
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=5.6e-33 Score=321.29 Aligned_cols=575 Identities=13% Similarity=0.136 Sum_probs=446.1
Q ss_pred cchHHHHHHHhcCccHHHHHHHHhcHHHHHHHhC---cchhhccchhhhhhhcCCcH-HHHHHHHHHhccccCCCCCcch
Q psy14014 12 LYPIAVLIDELKNEDVQLRLNSIKKLSTIALALG---QERTRGELIPFLTETIYDED-EVLLALAEQLGTFTPNVGGPEY 87 (615)
Q Consensus 12 ~~~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~---~~~~~~~ll~~l~~~~~~~~-~vr~~a~~~l~~l~~~~~~~~~ 87 (615)
-+.+..+++.+.|+|++.|..|...|......-. .+.....+++.+.+.+.|++ .+|.+++.+|+.+++.++ +++
T Consensus 5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~-~~~ 83 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK-EYQ 83 (1230)
T ss_dssp CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC-HHH
T ss_pred HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCC-HHH
Confidence 4578999999999999999999999887643211 11234577787777777766 599999999999998664 367
Q ss_pred hhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChh--------HHhhhHHHHHHHhhcC-CCcchhhhHHhhhhhhcc
Q psy14014 88 VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH--------DLEAHFVPLVQRLASG-DWFTSRTSACGLFSVCYP 158 (615)
Q Consensus 88 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--------~~~~~~l~~l~~l~~~-~~~~~r~~a~~~l~~~~~ 158 (615)
++.+++.+...+.|+++.+|..|+.++..++..+++. ...+.++|.+.....+ ++..+|..|+..+..++.
T Consensus 84 ~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~ 163 (1230)
T 1u6g_C 84 VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS 163 (1230)
T ss_dssp HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 7888888888888999999999999999999998865 2466789999888874 677899999988888774
Q ss_pred CCCh---hhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccC-chhHHHHHHHHHHHHH
Q psy14014 159 RVTA---GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDE-QDSVRLLAVEACVSIA 234 (615)
Q Consensus 159 ~~~~---~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~-~~~vr~~a~~~l~~l~ 234 (615)
..++ ...+.+++.+...+.|+++.||..++.+++.++...+.+. ...++|.+.+.+.+. ++.+|..++++++.++
T Consensus 164 ~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~ 242 (1230)
T 1u6g_C 164 RQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAIS 242 (1230)
T ss_dssp HTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHH
T ss_pred HhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHH
Confidence 3322 2457888889999999999999999999999998776543 455677776666544 3578999999999999
Q ss_pred hhcChh--hHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccc--hhhhHHHHHHHhhcC---------------
Q psy14014 235 SLLSQS--DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEI--TKTDLVQAFQMLLKD--------------- 295 (615)
Q Consensus 235 ~~~~~~--~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d--------------- 295 (615)
...+.. .+.+.++|.+.+.+.|+++.+|..++.+++.++..++.+. ..+.++|.+.+.+.+
T Consensus 243 ~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~ 322 (1230)
T 1u6g_C 243 RQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENA 322 (1230)
T ss_dssp HHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC--------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCccccccccc
Confidence 988763 2345689999999999999999999999999999887654 345677777665531
Q ss_pred ----------------------CcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHh
Q psy14014 296 ----------------------SEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMG 353 (615)
Q Consensus 296 ----------------------~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~ 353 (615)
..++||.+|+.+++.++...+.. -..+.+.++|.+...+.|.++.||..++.++..
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~--~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~ 400 (1230)
T 1u6g_C 323 MDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEM--LPEFYKTVSPALISRFKEREENVKADVFHAYLS 400 (1230)
T ss_dssp ----------------------CTTHHHHHHHHHHHHHHTTCCTT--HHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHH
T ss_pred ccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhH--HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 12568999999999999855431 125678888999888999999999999999988
Q ss_pred hchhhcc---------------------hhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhh
Q psy14014 354 LSPILGK---------------------HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYM 412 (615)
Q Consensus 354 l~~~~g~---------------------~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l 412 (615)
+....|. ..+.+.++|.+.+.++++++.+|..++..++.+....+.. +.
T Consensus 401 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~-l~--------- 470 (1230)
T 1u6g_C 401 LLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGA-LT--------- 470 (1230)
T ss_dssp HHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTT-TG---------
T ss_pred HHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhh-hH---------
Confidence 8776542 2345667788888899999999999999998887653211 00
Q ss_pred hhhhhccccchhhhhhhhHHHHHhhhcCCc--hHHHHHHHHhHHHHhhhChHh---HHHHHHHHHHHhcCCcchHHHHHH
Q psy14014 413 PLLAGQLGVEFFDEKLNALSIVELAEDSKW--RVRLAIIEYMPLLAGQLGVEF---FDEKLNALCMTWLVDHVYAIREAA 487 (615)
Q Consensus 413 ~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~--~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vR~~a 487 (615)
.++.+.+ |.+.+.+.|+++ .+|..++..+..+....|++. +.+.++|.++..+.|+++.+|..+
T Consensus 471 ---------~~l~~ll--~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~a 539 (1230)
T 1u6g_C 471 ---------QHIPVLV--PGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEA 539 (1230)
T ss_dssp ---------GGHHHHH--HHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHH
T ss_pred ---------HHHHHHH--HHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHH
Confidence 1111112 677888888876 899999999999988888764 445688999999999999999999
Q ss_pred HHHHHHHHHHhCh-------H--HhhhchhHHHHhhh--cCCCchHHHHHHHHHHHHHhhhChhh--HHHhhHHHHHhhC
Q psy14014 488 TLNLKKLVEQFGS-------E--WAQSTVIPKVVAMS--RDQNYLHRMTCLFCINVLAEACGPTV--TANFLLPTVLNMA 554 (615)
Q Consensus 488 ~~~l~~l~~~~~~-------~--~~~~~i~~~l~~~~--~d~~~~~R~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~ 554 (615)
+.+++.+++.+|+ . .+.+.++|.+...+ .|.++.+|..++.++|.++...|... +.+.++|.+...+
T Consensus 540 l~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l 619 (1230)
T 1u6g_C 540 LLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERL 619 (1230)
T ss_dssp HHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHh
Confidence 9999999998876 1 24467889888887 77889999999999999999887653 2366777777766
Q ss_pred CCCCchHHHHHHHHHHHHhHhhh---hhhHHhhHHHHHhhhcCCCCccHHHHHHHHHHHHhh
Q psy14014 555 GDNVANVRFNVAKTLQKIGPILE---TNVIQSQVKPALDKLNGDTDVDVKYFAQEAISSIAD 613 (615)
Q Consensus 555 ~D~~~~vr~~a~~~l~~l~~~~~---~~~~~~~~~~~l~~l~~d~d~~v~~~a~~a~~~~~~ 613 (615)
.++ ..|..++++++.+..... ...+.+.+.+.+.....|++..+|.++..+++.+..
T Consensus 620 ~~e--~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~ 679 (1230)
T 1u6g_C 620 KNE--ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIK 679 (1230)
T ss_dssp TSS--SHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHH
T ss_pred ccc--hhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 643 588899999998875332 134456677777777899999999999999998864
No 10
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=6.5e-31 Score=294.95 Aligned_cols=595 Identities=15% Similarity=0.127 Sum_probs=434.4
Q ss_pred HHHHHHHhcCc--cHHHHHHHHhcHHHHHHHhCcc---hhhccchhhhhhhcCCc--H-HHHHHHHHHhccccCCCCCc-
Q psy14014 15 IAVLIDELKNE--DVQLRLNSIKKLSTIALALGQE---RTRGELIPFLTETIYDE--D-EVLLALAEQLGTFTPNVGGP- 85 (615)
Q Consensus 15 i~~ll~~l~s~--d~~~R~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~~~~~~--~-~vr~~a~~~l~~l~~~~~~~- 85 (615)
+..++..+.++ ++..|..+++.|..+...++++ ...+.+++.+.+.+.++ + .+|..+.++++.++..++..
T Consensus 130 l~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~ 209 (876)
T 1qgr_A 130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF 209 (876)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667778888 9999999999999999876543 24456777777777765 3 59999999999887654321
Q ss_pred ---chhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcCh---hHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccC
Q psy14014 86 ---EYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP---HDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPR 159 (615)
Q Consensus 86 ---~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~ 159 (615)
...+.+++.+..++.++++.+|..+++++..++...++ ..+...+++.+.....+++..+|..++..+..+...
T Consensus 210 ~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~ 289 (876)
T 1qgr_A 210 DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (876)
T ss_dssp TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 11134777788888888899999999999999987664 223336777777777777778888887666555422
Q ss_pred C---------------------Chh---hHHHHHHHHHHHhC-------CCChHHHHHHHHhHHHHHHHhchhhhHhhhH
Q psy14014 160 V---------------------TAG---VKAELRSHFRNLCQ-------DDTPMVRRAAAGKLGELAKVVEVDYLKTDII 208 (615)
Q Consensus 160 ~---------------------~~~---~~~~l~~~l~~l~~-------d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll 208 (615)
. ... ..+.+++.+...+. |.+|.+|+.++.+++.++...+. ...+.++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~l 368 (876)
T 1qgr_A 290 EMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVL 368 (876)
T ss_dssp HHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG-GGHHHHH
T ss_pred HHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH-hhHHHHH
Confidence 1 011 22556676666653 46799999999999999998875 3466788
Q ss_pred HHHHHhhccCchhHHHHHHHHHHHHHhhcChh---hHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCcc----ch
Q psy14014 209 PMFVNLAQDEQDSVRLLAVEACVSIASLLSQS---DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPE----IT 281 (615)
Q Consensus 209 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~----~~ 281 (615)
|.+...++|++|.+|.+|+.+++.+++..+++ .+.+.++|.+...++|+++.||..++.+++.++...+.. ..
T Consensus 369 ~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 448 (876)
T 1qgr_A 369 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY 448 (876)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT
T ss_pred HHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH
Confidence 99999999999999999999999999887743 345668999999999999999999999999999887642 34
Q ss_pred hhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcc-------cc-----chhHHHHHhhHHHHHHhhCCC---CHHHHHH
Q psy14014 282 KTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLD-------AY-----NQENIIMTYILPYVKDLVADP---NQHVKSA 346 (615)
Q Consensus 282 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~-------~~-----~~~~~~~~~l~p~l~~~~~d~---~~~vR~~ 346 (615)
...+++.+...+.|. +.||..++.++..++...+ +. ..-..+.+.++|.+...+.+. +..+|..
T Consensus 449 l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~ 527 (876)
T 1qgr_A 449 LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSS 527 (876)
T ss_dssp HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHH
Confidence 567889999999886 8999999999999998754 10 001135677888888887764 4688988
Q ss_pred HHHHHHhhchhhcch--hhhhhhHHHHHHhhc-----------CCC----hhHHHHHHHhhhHhhhhhc-h---------
Q psy14014 347 LASVIMGLSPILGKH--NTVDHLLPLFLSQLK-----------DEC----PEVRLNIISNLDCVNEVIG-I--------- 399 (615)
Q Consensus 347 ~~~~l~~l~~~~g~~--~~~~~l~p~l~~~l~-----------d~~----~~vr~~a~~~l~~l~~~~~-~--------- 399 (615)
+.++++.++...|.+ .+.+.++|.+.+.+. +.+ +++|..++.+++.+....+ .
T Consensus 528 ~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l 607 (876)
T 1qgr_A 528 AYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVV 607 (876)
T ss_dssp HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHH
T ss_pred HHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHH
Confidence 999999888877753 234456666655443 222 6788888877777665554 1
Q ss_pred ----------hH--HHHHHHHHhhhhhhhhccccch---hhhhhhhHHHHHhhhcC-CchHHHHHHHHhHHHHhhhChHh
Q psy14014 400 ----------QQ--WRVRLAIIEYMPLLAGQLGVEF---FDEKLNALSIVELAEDS-KWRVRLAIIEYMPLLAGQLGVEF 463 (615)
Q Consensus 400 ----------~~--~~~~~~i~~~l~~l~~~~~~~~---~~~~l~~~~i~~~~~~~-~~~vr~~~~~~l~~l~~~~~~~~ 463 (615)
.. +..+..+...+..++...|..| +.. +. |.+...+.+. ++.+|..++.+++.++...|..+
T Consensus 608 ~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~-~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~ 685 (876)
T 1qgr_A 608 MASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEA-FK-PFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNI 685 (876)
T ss_dssp HHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHH-HH-HHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHH-HH-HHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhh
Confidence 00 0111123334444444444433 223 22 6777777776 89999999999999999888643
Q ss_pred --HHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHhChHH--hhhchhHHHHhhhcCCC-----------chHHHHH
Q psy14014 464 --FDEKLNALCMTWLVD--HVYAIREAATLNLKKLVEQFGSEW--AQSTVIPKVVAMSRDQN-----------YLHRMTC 526 (615)
Q Consensus 464 --~~~~l~~~l~~~l~d--~~~~vR~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~d~~-----------~~~R~~a 526 (615)
+.+.+++.+.+.+.+ .+..+|..++.+++.++..+|.++ +.+.++|.+.+.+.++. ..+|..+
T Consensus 686 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~ 765 (876)
T 1qgr_A 686 IPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESC 765 (876)
T ss_dssp HHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHH
Confidence 346788888888876 457899999999999999988764 23557777777665442 2789999
Q ss_pred HHHHHHHHhhhCh---------hh---HHHhhHHHHHhhCCCC--CchHHHHHHHHHHHHhHhhhh-hh--H--HhhHHH
Q psy14014 527 LFCINVLAEACGP---------TV---TANFLLPTVLNMAGDN--VANVRFNVAKTLQKIGPILET-NV--I--QSQVKP 587 (615)
Q Consensus 527 ~~~l~~l~~~~~~---------~~---~~~~i~~~l~~~~~D~--~~~vr~~a~~~l~~l~~~~~~-~~--~--~~~~~~ 587 (615)
+.+++.+....+. .. +.+.+++.+.....|+ +..||..++.+|+.++...+. .. + ...+.+
T Consensus 766 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ 845 (876)
T 1qgr_A 766 LEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHE 845 (876)
T ss_dssp HHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHH
T ss_pred HHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHH
Confidence 9999988876543 12 2345666676666777 789999999999999988865 21 1 234566
Q ss_pred HHhhhcCCCCccHHHHHHHHHHHHhh
Q psy14014 588 ALDKLNGDTDVDVKYFAQEAISSIAD 613 (615)
Q Consensus 588 ~l~~l~~d~d~~v~~~a~~a~~~~~~ 613 (615)
++.....|++++||..|..|++.+++
T Consensus 846 ll~~~l~~~~~~~r~~a~~a~~~~~~ 871 (876)
T 1qgr_A 846 LLTEGRRSKTNKAKTLARWATKELRK 871 (876)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCHhHHHHHHHHHHHHHH
Confidence 66645578999999999999999875
No 11
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.95 E-value=2e-24 Score=228.86 Aligned_cols=518 Identities=14% Similarity=0.149 Sum_probs=361.1
Q ss_pred CCCCCcchHHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcH-HHHHHHHHHhccccCCCCCc
Q psy14014 7 APDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAEQLGTFTPNVGGP 85 (615)
Q Consensus 7 ~~~~~~~~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~-~vr~~a~~~l~~l~~~~~~~ 85 (615)
+.+..-..+..+.+.++++|...|..+++.+-.+ ...|.+ ...+.+.+.+++.+++ ++|+.+...+..+++. .+
T Consensus 7 f~~~~~~e~~~i~~~L~~~~~~~k~~~~~kli~~-~~~G~d--~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~ 81 (591)
T 2vgl_B 7 FTTNKKGEIFELKAELNNEKKEKRKEAVKKVIAA-MTVGKD--VSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS--QP 81 (591)
T ss_dssp TCCCSSSHHHHHHHHTTSSCHHHHHHHHHHHHHH-HHTTCC--CGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH--SH
T ss_pred cccccCChHHHHHHHHcCCCHHHHHHHHHHHHHH-HHCCCC--hHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--Cc
Confidence 3333345688889999999999888888777754 345555 2345555666777766 5888877777666542 23
Q ss_pred chhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhH
Q psy14014 86 EYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVK 165 (615)
Q Consensus 86 ~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~ 165 (615)
+....+++.+.+.+.++++.+|..|+.+++.+. . . ++.
T Consensus 82 e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~---~-~--------------------------------------~~~ 119 (591)
T 2vgl_B 82 DMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR---V-D--------------------------------------KIT 119 (591)
T ss_dssp HHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC---S-G--------------------------------------GGH
T ss_pred hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC---h-H--------------------------------------HHH
Confidence 344445667777788889999988887776542 1 1 223
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh---hH
Q psy14014 166 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS---DV 242 (615)
Q Consensus 166 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~ 242 (615)
+.+.+.+.+++.|+++.||+.|+.++..+++..+.......++|.+.++++|+++.|+..|+.++..++..-+.. ..
T Consensus 120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l 199 (591)
T 2vgl_B 120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDL 199 (591)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhc
Confidence 334455677888999999999999999998854432222468899999999999999999999999988765432 12
Q ss_pred HHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcc-ccchh
Q psy14014 243 EQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLD-AYNQE 321 (615)
Q Consensus 243 ~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~-~~~~~ 321 (615)
.+..++.+.+.+.+.++..+..+++.++.+... .......+++.+..++++.++.|+..|++++..+...++ ....-
T Consensus 200 ~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~--~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~ 277 (591)
T 2vgl_B 200 NPQNINKLLTALNECTEWGQIFILDCLSNYNPK--DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYY 277 (591)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC--SHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSH
T ss_pred cHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHH
Confidence 233445555555566766777777766554321 111235788888999999999999999999998875441 11111
Q ss_pred HHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhH
Q psy14014 322 NIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ 401 (615)
Q Consensus 322 ~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 401 (615)
......+.+.+..+. ++++.+|..++.+++.+....+ +.+.+++. .+....+| +..||..+++.+..+...-+
T Consensus 278 ~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p-~~~~~~~~-~~~~~~~d-~~~Ir~~al~~L~~l~~~~n--- 350 (591)
T 2vgl_B 278 NMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRP-EILKQEIK-VFFVKYND-PIYVKLEKLDIMIRLASQAN--- 350 (591)
T ss_dssp HHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCC-STTTTCTT-TTSCCTTS-CHHHHHHHHHHHHHTCCSST---
T ss_pred HHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhCh-HHHHHHHH-hheeccCC-hHHHHHHHHHHHHHHCChhh---
Confidence 123456667666665 4889999999999999876532 22222221 22222334 48999999988776543221
Q ss_pred HHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcch
Q psy14014 402 WRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVY 481 (615)
Q Consensus 402 ~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~ 481 (615)
... .+ +.+.+.+++.++.+|..++.+++.++..++.. .+.+++.+++++.+...
T Consensus 351 v~~------iv------------------~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~--~~~~v~~Ll~ll~~~~~ 404 (591)
T 2vgl_B 351 IAQ------VL------------------AELKEYATEVDVDFVRKAVRAIGRCAIKVEQS--AERCVSTLLDLIQTKVN 404 (591)
T ss_dssp HHH------HH------------------HHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHTCCH
T ss_pred HHH------HH------------------HHHHHHHhcCCHHHHHHHHHHHHHHHHhChhH--HHHHHHHHHHHHcccch
Confidence 111 12 45667778889999999999999999876532 35678888999999988
Q ss_pred HHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhc-CCCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCch
Q psy14014 482 AIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSR-DQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVAN 560 (615)
Q Consensus 482 ~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~-d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~ 560 (615)
.++..+...+..+...... ....+++.|.+.+. ...+.+|..+++++|+.+..... .+.++..+.+...+..+.
T Consensus 405 ~v~~e~i~~l~~ii~~~p~--~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~---~~~~l~~l~~~~~~~~~~ 479 (591)
T 2vgl_B 405 YVVQEAIVVIRDIFRKYPN--KYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN---ADELLESFLEGFHDESTQ 479 (591)
T ss_dssp HHHHHHHHHHHHHHHHSCS--SCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT---HHHHHHHHSTTCSSSCHH
T ss_pred HHHHHHHHHHHHHHHHCcc--hHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC---HHHHHHHHHHhhccCCHH
Confidence 8999999999999877543 23457888888776 46788999999999998876543 234556666666778899
Q ss_pred HHHHHHHHHHHHhHhhhhhhHHhhHHHHHhhhcCC-CCccHHHHHHHHHHHHh
Q psy14014 561 VRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGD-TDVDVKYFAQEAISSIA 612 (615)
Q Consensus 561 vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d-~d~~v~~~a~~a~~~~~ 612 (615)
||..++.++..+....+.. ..+.+..++.....| .|.|||+.|.+.++.+.
T Consensus 480 vr~~~l~a~~Kl~~~~p~~-~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~ 531 (591)
T 2vgl_B 480 VQLTLLTAIVKLFLKKPSE-TQELVQQVLSLATQDSDNPDLRDRGYIYWRLLS 531 (591)
T ss_dssp HHHHHHHHHHHHHTTCCST-THHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhcCchH-HHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHC
Confidence 9999999999998765432 234566677776566 78899999999887664
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.93 E-value=7.5e-23 Score=211.88 Aligned_cols=427 Identities=15% Similarity=0.129 Sum_probs=271.7
Q ss_pred chhhhhhhcCCcHHHHHHHHHHhccccCCCCCcchhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHH
Q psy14014 53 LIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVP 132 (615)
Q Consensus 53 ll~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~ 132 (615)
+...|....+.++++|+.|.+.|..+... ..+.++..++.++.. .+.+..+|..|...|+++........-..
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~-~~~~~~~~L~~il~~--~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~---- 75 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVE-NLPTFLVELSRVLAN--PGNSQVARVAAGLQIKNSLTSKDPDIKAQ---- 75 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHHHHCCSSHHHHHH----
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHhccccchHHHHH----
Confidence 34445555555556777777666654320 012233333333321 12357888888888877664432111000
Q ss_pred HHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHH
Q psy14014 133 LVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFV 212 (615)
Q Consensus 133 ~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~ 212 (615)
....+..++++.+..+...+...+.++++.+ ..++.+++.++....++..|+.++|.+.
T Consensus 76 --------------------~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~ 134 (462)
T 1ibr_B 76 --------------------YQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLV 134 (462)
T ss_dssp --------------------HHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHH
T ss_pred --------------------HHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 0112234566677778887888888888889 9999999999988766556889999999
Q ss_pred HhhccC--chhHHHHHHHHHHHHHhhcChh---hHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHH
Q psy14014 213 NLAQDE--QDSVRLLAVEACVSIASLLSQS---DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQ 287 (615)
Q Consensus 213 ~~~~d~--~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~ 287 (615)
+.++++ ++.+|..++.++..+++....+ .+.+ .+++
T Consensus 135 ~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~---------------------------------------~ll~ 175 (462)
T 1ibr_B 135 ANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSN---------------------------------------EILT 175 (462)
T ss_dssp HHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHH---------------------------------------HHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHH---------------------------------------HHHH
Confidence 999888 8899999999999988765321 1122 3444
Q ss_pred HHHHhhcCC--cHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc--hhh
Q psy14014 288 AFQMLLKDS--EAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK--HNT 363 (615)
Q Consensus 288 ~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~--~~~ 363 (615)
.+...++|+ ++.||..|++++..++..+..........+.+++.+.+...++++.+|..+++++..++...+. ..+
T Consensus 176 ~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~ 255 (462)
T 1ibr_B 176 AIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETY 255 (462)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444 3455555555555443322211100011233567777788999999999999999999877654 234
Q ss_pred hh-hhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHh----hhhhhhhccccchh---hhhhhhHHHHH
Q psy14014 364 VD-HLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIE----YMPLLAGQLGVEFF---DEKLNALSIVE 435 (615)
Q Consensus 364 ~~-~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~----~l~~l~~~~~~~~~---~~~l~~~~i~~ 435 (615)
.+ .++|.+...+++.+++||..+++.+..+.+... ......-+ .-+.. .....++ ...+. |.+.+
T Consensus 256 ~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~-p~l~~ 328 (462)
T 1ibr_B 256 MGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEM----DLAIEASEAAEQGRPPE--HTSKFYAKGALQYLV-PILTQ 328 (462)
T ss_dssp TTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHH----HHHHHHCCTTCSSSCSS--CCCCCHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH----HHHHhcccccccCCCcc--chhHHHHHHHhhhcc-HHHHH
Confidence 55 788888888999999999999998887765320 00000000 00000 0000011 01111 44544
Q ss_pred hhh-------cCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHH---hhh
Q psy14014 436 LAE-------DSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEW---AQS 505 (615)
Q Consensus 436 ~~~-------~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~ 505 (615)
.+. +.+|.+|..+..++..++..+|. ...+.++|.+...+.+++|.+|.+|+.+++.++..++++. ...
T Consensus 329 ~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~ 407 (462)
T 1ibr_B 329 TLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVI 407 (462)
T ss_dssp HTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTT
T ss_pred HHHhcccccccccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 442 35789999999999999988884 4567788888888899999999999999999987554321 235
Q ss_pred chhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhh----HHHhhHHHHHhhC
Q psy14014 506 TVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTV----TANFLLPTVLNMA 554 (615)
Q Consensus 506 ~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~~~ 554 (615)
.++|.+...++|+++.+|..|+++++.+++..++.. +.+.++|.+.+.+
T Consensus 408 ~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L 460 (462)
T 1ibr_B 408 QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL 460 (462)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC-
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHh
Confidence 688888888899999999999999999988776532 3444555555443
No 13
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.92 E-value=8.5e-22 Score=207.65 Aligned_cols=480 Identities=14% Similarity=0.084 Sum_probs=320.4
Q ss_pred hccccCCCCCcchhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhh
Q psy14014 75 LGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFS 154 (615)
Q Consensus 75 l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~ 154 (615)
++.+..+.++..+....+|.|..++.++++.+|..|+.++..++..-+... .++ .
T Consensus 2 ~~~l~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~---~~~-------~--------------- 56 (529)
T 1jdh_A 2 VVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH---AIM-------R--------------- 56 (529)
T ss_dssp CCSCC----------CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHH---HHH-------T---------------
T ss_pred hHHHhhcCchhhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHH---HHH-------h---------------
Confidence 455666666666667788889999999999999999999999876432110 000 0
Q ss_pred hhccCCChhhHHHHHHHHHHHhC-CCChHHHHHHHHhHHHHHHHhch--hhhHhhhHHHHHHhhccCchhHHHHHHHHHH
Q psy14014 155 VCYPRVTAGVKAELRSHFRNLCQ-DDTPMVRRAAAGKLGELAKVVEV--DYLKTDIIPMFVNLAQDEQDSVRLLAVEACV 231 (615)
Q Consensus 155 ~~~~~~~~~~~~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~ 231 (615)
....++.+.+++. ++++.+|..++.+|..++..-.. .......+|.+.++++++++.++..|+.++.
T Consensus 57 ----------~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~ 126 (529)
T 1jdh_A 57 ----------SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 126 (529)
T ss_dssp ----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred ----------CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 0112233344443 45888999999998887653211 2234468899999999999999999999999
Q ss_pred HHHhhcChh--h-HHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh---CccchhhhHHHHHHHhhcCCcHH-HHHHH
Q psy14014 232 SIASLLSQS--D-VEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAV---GPEITKTDLVQAFQMLLKDSEAE-VRAAA 304 (615)
Q Consensus 232 ~l~~~~~~~--~-~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~-vr~~a 304 (615)
.++..-+.. . .....+|.+.+++.++++.+|..++.++..++..- .........++.+..++++.+++ ++..+
T Consensus 127 ~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a 206 (529)
T 1jdh_A 127 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTT 206 (529)
T ss_dssp HHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHH
Confidence 998765432 1 23568999999999999999999999998876421 01112235678888888766544 55566
Q ss_pred HHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHH
Q psy14014 305 ANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRL 384 (615)
Q Consensus 305 ~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~ 384 (615)
...+..+.. .+..+........+|.+..++.+.++.++..+++++..++............+|.+.+++.+++++++.
T Consensus 207 ~~~L~~l~~--~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~ 284 (529)
T 1jdh_A 207 SRVLKVLSV--CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVT 284 (529)
T ss_dssp HHHHHHHTT--STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHhc--CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHH
Confidence 777776664 222233333456889999999999999999999999999876443333456899999999999999999
Q ss_pred HHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhc--CCchHHHHHHHHhHHHHhhhCh-
Q psy14014 385 NIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAED--SKWRVRLAIIEYMPLLAGQLGV- 461 (615)
Q Consensus 385 ~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~--~~~~vr~~~~~~l~~l~~~~~~- 461 (615)
.++.+|..+.... ....... .+. ... |.+.+++.+ .++.+|..++.++..++...+.
T Consensus 285 ~a~~~L~~L~~~~--~~~~~~~--~~~---------------~~v-~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~ 344 (529)
T 1jdh_A 285 CAAGILSNLTCNN--YKNKMMV--CQV---------------GGI-EALVRTVLRAGDREDITEPAICALRHLTSRHQEA 344 (529)
T ss_dssp HHHHHHHHHTTTC--HHHHHHH--HHT---------------THH-HHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTH
T ss_pred HHHHHHHHHhcCC--HHHHHHH--HHc---------------CCh-HHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchH
Confidence 9999998885431 1111111 000 001 455666643 4478999999999998654322
Q ss_pred -----HhHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHHHHHhCh--HHhhhchhHHHHhhhcCCCchHHHHHHHHHHH-
Q psy14014 462 -----EFFDEKLNALCMTWLVDHV-YAIREAATLNLKKLVEQFGS--EWAQSTVIPKVVAMSRDQNYLHRMTCLFCINV- 532 (615)
Q Consensus 462 -----~~~~~~l~~~l~~~l~d~~-~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~- 532 (615)
.......+|.+.+++.++. +.+|..++.+++.++..-.. ......++|.|.+++.++++.+|..+++++++
T Consensus 345 ~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~ 424 (529)
T 1jdh_A 345 EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQ 424 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCch
Confidence 1222346788899998876 59999999999999752111 11224578999998888877777766555443
Q ss_pred ---------------------HHhhhCh--hhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhh--hhhHHhhHHH
Q psy14014 533 ---------------------LAEACGP--TVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE--TNVIQSQVKP 587 (615)
Q Consensus 533 ---------------------l~~~~~~--~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~~ 587 (615)
++..... .......+|.+..++.|++++||..++.++.++...-. .........+
T Consensus 425 ~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~ 504 (529)
T 1jdh_A 425 QFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATA 504 (529)
T ss_dssp -CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHH
T ss_pred hhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChH
Confidence 3321110 11234577999999999999999999999999874211 1122334567
Q ss_pred HHhhhcCCCCccHHHHHHHHHHHH
Q psy14014 588 ALDKLNGDTDVDVKYFAQEAISSI 611 (615)
Q Consensus 588 ~l~~l~~d~d~~v~~~a~~a~~~~ 611 (615)
.+..+..++|++|++.|..|+..+
T Consensus 505 ~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 505 PLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhc
Confidence 788888999999999999999876
No 14
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.91 E-value=2.5e-21 Score=200.41 Aligned_cols=391 Identities=15% Similarity=0.120 Sum_probs=287.3
Q ss_pred HHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhcc--CchhHHHHHHHHHHHHHhh--------------
Q psy14014 173 RNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQD--EQDSVRLLAVEACVSIASL-------------- 236 (615)
Q Consensus 173 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d--~~~~vr~~a~~~l~~l~~~-------------- 236 (615)
+..+.+++..+|+.|-+.|..+.+.- .+...+.+...+.+ .+..+|..|...+..+...
T Consensus 7 L~~~~s~d~~~r~~Ae~~L~~~~~~~-----~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~ 81 (462)
T 1ibr_B 7 LEKTVSPDRLELEAAQKFLERAAVEN-----LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (462)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhhC-----hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhh
Confidence 33456788999999999998865421 12334444444444 3678999999999887632
Q ss_pred -cChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCC--cHHHHHHHHHHHHHHHh
Q psy14014 237 -LSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDS--EAEVRAAAANKVRDFCQ 313 (615)
Q Consensus 237 -~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~ 313 (615)
++++ ....+...+...+.+++..+ ..++.+++.++....++...+.++|.+...+.+. ++.+|..++.+++.+++
T Consensus 82 ~l~~~-~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (462)
T 1ibr_B 82 AIDAN-ARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (462)
T ss_dssp TSCHH-HHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCHH-HHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence 2322 24456666777788888888 9999999999987544323468999999999998 89999999999999998
Q ss_pred hccccchhHHHHHhhHHHHHHhhCCC--CHHHHHHHHHHHHhhchhhcch----hhhhhhHHHHHHhhcCCChhHHHHHH
Q psy14014 314 NLDAYNQENIIMTYILPYVKDLVADP--NQHVKSALASVIMGLSPILGKH----NTVDHLLPLFLSQLKDECPEVRLNII 387 (615)
Q Consensus 314 ~~~~~~~~~~~~~~l~p~l~~~~~d~--~~~vR~~~~~~l~~l~~~~g~~----~~~~~l~p~l~~~l~d~~~~vr~~a~ 387 (615)
...+... ..+.+.++|.+...++|+ ++.||..++++++.+...++.. ...+.+++.+.+.+.+.+++||..++
T Consensus 160 ~~~~~~~-~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~ 238 (462)
T 1ibr_B 160 DIDPEQL-QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAAL 238 (462)
T ss_dssp HSCGGGT-GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred hCCchhh-HhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 6532211 234567889999999988 7999999999999876654321 12345678888888888999999999
Q ss_pred HhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhh--------
Q psy14014 388 SNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQL-------- 459 (615)
Q Consensus 388 ~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~-------- 459 (615)
+++..+.+..+.. +. .++ ...+. +.+...+++.+..+|..+++.+..++...
T Consensus 239 ~~l~~l~~~~~~~-~~------~~~------------~~~l~-~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~ 298 (462)
T 1ibr_B 239 QNLVKIMSLYYQY-ME------TYM------------GPALF-AITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEAS 298 (462)
T ss_dssp HHHHHHHHHCGGG-CT------TTT------------TTTHH-HHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH-HH------HHH------------HHHHH-HHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9998876644321 00 011 10111 45566677888999999999998887652
Q ss_pred ------------ChHh---HHHHHHHHHHHhcC-------CcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcC
Q psy14014 460 ------------GVEF---FDEKLNALCMTWLV-------DHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRD 517 (615)
Q Consensus 460 ------------~~~~---~~~~l~~~l~~~l~-------d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d 517 (615)
...+ +.+.++|.+++.+. |.++.+|.+|..+++.++..+|. .....++|.+...+++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-~~~~~~~~~l~~~l~~ 377 (462)
T 1ibr_B 299 EAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEHIKN 377 (462)
T ss_dssp CTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-THHHHHHHHHHHHTTC
T ss_pred cccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHhcC
Confidence 0111 23668888888774 34688999999999999999984 3456788999999999
Q ss_pred CCchHHHHHHHHHHHHHhhhChhh---HHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhh-HHhhHHHHHhhh
Q psy14014 518 QNYLHRMTCLFCINVLAEACGPTV---TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNV-IQSQVKPALDKL 592 (615)
Q Consensus 518 ~~~~~R~~a~~~l~~l~~~~~~~~---~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~~l~~l 592 (615)
++|.+|..++.++|.+++.++++. ..+.++|.+..+++|+++.||..|+.++++++...++.. ..+.+.+++..|
T Consensus 378 ~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~L 456 (462)
T 1ibr_B 378 PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCL 456 (462)
T ss_dssp SSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHH
Confidence 999999999999999998665332 346789999999999999999999999999998876532 124555655554
No 15
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.91 E-value=2e-21 Score=211.87 Aligned_cols=493 Identities=13% Similarity=0.081 Sum_probs=337.6
Q ss_pred HHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChh--h--HHHH
Q psy14014 93 PPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG--V--KAEL 168 (615)
Q Consensus 93 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~--~--~~~l 168 (615)
+.+...+.+++..+|..++..+.... ...+....+|.+..+..+++..+|..|+..+..++...... . ...+
T Consensus 118 ~~lv~~L~~~~~~~r~~a~~~l~~~~----~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~ 193 (780)
T 2z6g_A 118 PTNVQRLAEPSQMLKHAVVNLINYQD----DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 193 (780)
T ss_dssp --------CCSCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred HHHHHHhcCccHHHHHHHHHHHHhhh----HHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence 44444446667788888877776442 22334556777777777777888999998888877643211 1 1346
Q ss_pred HHHHHHHhC-CCChHHHHHHHHhHHHHHHHhch--hhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh--hH-
Q psy14014 169 RSHFRNLCQ-DDTPMVRRAAAGKLGELAKVVEV--DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS--DV- 242 (615)
Q Consensus 169 ~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~- 242 (615)
++.+..++. +.++.+|..++.+|..++..-.. .......+|.+.++++++++.+|..|+.+|..++...+.. .+
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~ 273 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVR 273 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHH
Confidence 666666665 45899999999999998754221 2234568999999999999999999999999998875432 11
Q ss_pred HHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh---CccchhhhHHHHHHHhhcCCcHHH-HHHHHHHHHHHHhhcccc
Q psy14014 243 EQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAV---GPEITKTDLVQAFQMLLKDSEAEV-RAAAANKVRDFCQNLDAY 318 (615)
Q Consensus 243 ~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~v-r~~a~~~l~~~~~~~~~~ 318 (615)
....+|.+.+++.++++.++..++.++..++... .........++.+..++++.+++. +..++.++..++.. ..
T Consensus 274 ~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~--~~ 351 (780)
T 2z6g_A 274 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC--SS 351 (780)
T ss_dssp HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS--TT
T ss_pred HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC--hH
Confidence 2458899999999999999999999988776311 001112356788888888776554 45667777776642 22
Q ss_pred chhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhc
Q psy14014 319 NQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG 398 (615)
Q Consensus 319 ~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 398 (615)
.+........+|.|..++.+.+..++..+++++..++...........++|.+.+++.+.++.+|..|+.+|..+.....
T Consensus 352 ~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~ 431 (780)
T 2z6g_A 352 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 431 (780)
T ss_dssp HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence 22233345678999999999999999999999999986544333345689999999999999999999999988754321
Q ss_pred hhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhc-CCc-hHHHHHHHHhHHHHhhhCh------HhHHHHHHH
Q psy14014 399 IQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAED-SKW-RVRLAIIEYMPLLAGQLGV------EFFDEKLNA 470 (615)
Q Consensus 399 ~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~-~~~-~vr~~~~~~l~~l~~~~~~------~~~~~~l~~ 470 (615)
...... .+ .... +.+.+++.+ .++ .+|..++.+|+.++...+. .......+|
T Consensus 432 --~~~~~i--~~---------------~g~i-~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~ 491 (780)
T 2z6g_A 432 --KNKMMV--CQ---------------VGGI-EALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLP 491 (780)
T ss_dssp --HHHHHH--HT---------------TTHH-HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHH
T ss_pred --HHHHHH--HH---------------CCCH-HHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHH
Confidence 111111 00 0001 455666654 344 8999999999988653322 112234578
Q ss_pred HHHHhcCCcch-HHHHHHHHHHHHHHHHhChHH----hhhchhHHHHhhhcCCCc----------------------hHH
Q psy14014 471 LCMTWLVDHVY-AIREAATLNLKKLVEQFGSEW----AQSTVIPKVVAMSRDQNY----------------------LHR 523 (615)
Q Consensus 471 ~l~~~l~d~~~-~vR~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~~~~d~~~----------------------~~R 523 (615)
.+.+++.++.. .+|..++.+++.++. ++.. ....++|.|.+++.+.++ .++
T Consensus 492 ~L~~lL~~~~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~ 569 (780)
T 2z6g_A 492 VVVKLLHPPSHWPLIKATVGLIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 569 (780)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHHHHHS--SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHH
T ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHH
Confidence 88999987764 999999999999984 2221 123477888877765433 355
Q ss_pred HHHHHHHHHHHhhhChh--hHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhh--hHHhhHHHHHhhhcCCCCcc
Q psy14014 524 MTCLFCINVLAEACGPT--VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN--VIQSQVKPALDKLNGDTDVD 599 (615)
Q Consensus 524 ~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~l~~d~d~~ 599 (615)
..++.+|+.++...... .....++|.|..++.+++++||..++.+|..+...-+.. .......+.+..|+.+++.+
T Consensus 570 ~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~ 649 (780)
T 2z6g_A 570 EACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEG 649 (780)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHH
T ss_pred HHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHH
Confidence 66777777775321111 123567899999999999999999999999986331111 11223456677788999999
Q ss_pred HHHHHHHHHHHHhh
Q psy14014 600 VKYFAQEAISSIAD 613 (615)
Q Consensus 600 v~~~a~~a~~~~~~ 613 (615)
||.+|..|+..+++
T Consensus 650 Vr~~A~~aL~~l~~ 663 (780)
T 2z6g_A 650 VATYAAAVLFRMSE 663 (780)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999875
No 16
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.91 E-value=5.3e-21 Score=205.49 Aligned_cols=473 Identities=14% Similarity=0.104 Sum_probs=324.8
Q ss_pred CcchhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChh
Q psy14014 84 GPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG 163 (615)
Q Consensus 84 ~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~ 163 (615)
+..+....+|.|..++.++++.+|..|+.+|..++......... ..
T Consensus 8 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i----------~~------------------------ 53 (644)
T 2z6h_A 8 DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAI----------MR------------------------ 53 (644)
T ss_dssp ----CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHH----------TT------------------------
T ss_pred hhhhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHH----------Hh------------------------
Confidence 33444556788888888999999999999999998765421100 00
Q ss_pred hHHHHHHHHHHHhC-CCChHHHHHHHHhHHHHHHHhch--hhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh
Q psy14014 164 VKAELRSHFRNLCQ-DDTPMVRRAAAGKLGELAKVVEV--DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 240 (615)
Q Consensus 164 ~~~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~ 240 (615)
....++.+...+. +.++.+|..++.+|..++..-.. .......+|.+.++++++++.+|..|+.++..++......
T Consensus 54 -~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~ 132 (644)
T 2z6h_A 54 -SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA 132 (644)
T ss_dssp -CHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTH
T ss_pred -ccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchh
Confidence 0112233344444 34788888888888877653221 1223468899999999999999999999999998775432
Q ss_pred h---HHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCc---cchhhhHHHHHHHhhcCCc-HHHHHHHHHHHHHHHh
Q psy14014 241 D---VEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGP---EITKTDLVQAFQMLLKDSE-AEVRAAAANKVRDFCQ 313 (615)
Q Consensus 241 ~---~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~ 313 (615)
. .....+|.+.+++.+++++++..++.+|..++...+. .......++.+..++++.+ ..++..++.+|..++.
T Consensus 133 ~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 212 (644)
T 2z6h_A 133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 212 (644)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence 1 1346899999999999999999999999888742111 1122356888888888765 5677788888887764
Q ss_pred hccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHh
Q psy14014 314 NLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV 393 (615)
Q Consensus 314 ~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l 393 (615)
.+..+........+|.+.+++.+.+..+|..++++|..++...........++|.+.+++.+.++++|..++.+|..+
T Consensus 213 --~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L 290 (644)
T 2z6h_A 213 --CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 290 (644)
T ss_dssp --CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred --CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 223333334455789999999999999999999999999875433333456899999999999999999999999887
Q ss_pred hhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhc-C-CchHHHHHHHHhHHHHhhhChH------hHH
Q psy14014 394 NEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAED-S-KWRVRLAIIEYMPLLAGQLGVE------FFD 465 (615)
Q Consensus 394 ~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~-~-~~~vr~~~~~~l~~l~~~~~~~------~~~ 465 (615)
.... ...++.+.-...+ +.+..++.+ . .+.+|..++.+++.++...+.. ...
T Consensus 291 ~~~~--~~~~~~v~~~g~v------------------~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~ 350 (644)
T 2z6h_A 291 TCNN--YKNKMMVCQVGGI------------------EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL 350 (644)
T ss_dssp HTTC--HHHHHHHHHTTHH------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHH
T ss_pred HcCC--HHHHHHHHHcCCH------------------HHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 5431 1111111000011 455666654 2 3789999999999997543321 223
Q ss_pred HHHHHHHHHhcCCcc-hHHHHHHHHHHHHHHHHhCh--HHhhhchhHHHHhhhcCCCch---------------------
Q psy14014 466 EKLNALCMTWLVDHV-YAIREAATLNLKKLVEQFGS--EWAQSTVIPKVVAMSRDQNYL--------------------- 521 (615)
Q Consensus 466 ~~l~~~l~~~l~d~~-~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~d~~~~--------------------- 521 (615)
...+|.+.+++.++. +.+|..++.+++.++..-.. ......++|.|.+++.+.++.
T Consensus 351 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~ 430 (644)
T 2z6h_A 351 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRME 430 (644)
T ss_dssp TTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHH
T ss_pred ccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHH
Confidence 357888999998875 69999999999998752111 112345788888877664443
Q ss_pred -HHHHHHHHHHHHHhhhChh--hHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhh--hHHhhHHHHHhhhcCCC
Q psy14014 522 -HRMTCLFCINVLAEACGPT--VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN--VIQSQVKPALDKLNGDT 596 (615)
Q Consensus 522 -~R~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~l~~d~ 596 (615)
++..++.++..++...... ......+|.|..++.+++++++..++.+|..+...-+.. .......+.+..+..++
T Consensus 431 ~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~ 510 (644)
T 2z6h_A 431 EIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSR 510 (644)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCC
Confidence 4455666666665432111 123467899999999999999999999999987431111 11223456677788999
Q ss_pred CccHHHHHHHHHHHHhh
Q psy14014 597 DVDVKYFAQEAISSIAD 613 (615)
Q Consensus 597 d~~v~~~a~~a~~~~~~ 613 (615)
+++||.+|..|++.+++
T Consensus 511 ~~~vr~~A~~aL~~l~~ 527 (644)
T 2z6h_A 511 NEGVATYAAAVLFRMSE 527 (644)
T ss_dssp CHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999999875
No 17
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.90 E-value=2.6e-19 Score=189.93 Aligned_cols=572 Identities=13% Similarity=0.088 Sum_probs=384.3
Q ss_pred HHHHHhcC-ccHHHHHHHHhcHHHHHHHhCcch----hhccchhhhhhhcCCcH-HHHHHHHHHhccccCCCC-------
Q psy14014 17 VLIDELKN-EDVQLRLNSIKKLSTIALALGQER----TRGELIPFLTETIYDED-EVLLALAEQLGTFTPNVG------- 83 (615)
Q Consensus 17 ~ll~~l~s-~d~~~R~~a~~~l~~~~~~~~~~~----~~~~ll~~l~~~~~~~~-~vr~~a~~~l~~l~~~~~------- 83 (615)
.+..-+++ ++.+....++|.|+.+++.- .++ ...-=.|.+.+.+..++ ++-.+++.++..+...+.
T Consensus 53 ~~~~l~~~~~~~~~~~~~~r~~~~~~~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (810)
T 3now_A 53 KVASLTKVEKDQDIYVNMVHLVAALCENS-VERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPD 131 (810)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTT
T ss_pred HHHHHHhccCchhHHHHHHHHHHHHHhcc-HHHHHHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccc
Confidence 33334444 77888889999999997522 111 11122344555544443 344444444443332111
Q ss_pred -Cc------c---hhhhchHHHhhhhcCc--hhHHHHHHHHHHHHHHhhcChhHH----hh-hHHHHHHHhhcCC-----
Q psy14014 84 -GP------E---YVHCLLPPLESLATVE--ETVVRDKAVESLRLISAQHSPHDL----EA-HFVPLVQRLASGD----- 141 (615)
Q Consensus 84 -~~------~---~~~~l~~~l~~l~~~~--~~~vr~~a~~~l~~l~~~~~~~~~----~~-~~l~~l~~l~~~~----- 141 (615)
++ + -+..++..|..++.+. ....|+.+++.+.+...+-..... .. -+..++.-...-+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~ 211 (810)
T 3now_A 132 SKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYE 211 (810)
T ss_dssp CCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCS
T ss_pred cCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCcccccc
Confidence 11 1 2334555566666665 468999999988877654432111 11 1222222222211
Q ss_pred -----CcchhhhHHhhhhhhccCCC-----hhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhch---hh-hHhhh
Q psy14014 142 -----WFTSRTSACGLFSVCYPRVT-----AGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV---DY-LKTDI 207 (615)
Q Consensus 142 -----~~~~r~~a~~~l~~~~~~~~-----~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~-~~~~l 207 (615)
..+.|..+.-++..+|..+. +...+.+-.++...+...+.+-+-.++.++..+...... .. ..+..
T Consensus 212 ~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~ 291 (810)
T 3now_A 212 SAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGI 291 (810)
T ss_dssp SCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTH
T ss_pred ccCCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccch
Confidence 24678888889999998886 333444445555566667777777777777777654322 12 24578
Q ss_pred HHHHHHhhccCchhHHHHHHHHHHHHHhhcCh-hhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCcc-------
Q psy14014 208 IPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ-SDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPE------- 279 (615)
Q Consensus 208 l~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~------- 279 (615)
+|.+..++..++..++..|+++++..+..-.. +.+...-+|.|..++.+.+..+|..++.+|.+++...+.+
T Consensus 292 v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~ 371 (810)
T 3now_A 292 LQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFG 371 (810)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSST
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchh
Confidence 89999999999999999999999987655211 1112223499999998888899999998888887543311
Q ss_pred -chhhhHHHHHHHhhcCC--cHHHHHHHHHHHHHHHhhccccchhHHHH-HhhHHHHHHhhCCCCHHHHHHHHHHHHhhc
Q psy14014 280 -ITKTDLVQAFQMLLKDS--EAEVRAAAANKVRDFCQNLDAYNQENIIM-TYILPYVKDLVADPNQHVKSALASVIMGLS 355 (615)
Q Consensus 280 -~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~~~~~~~~~~-~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~ 355 (615)
.....+++.+.+++.++ ++++|..|+.+|..+... +..+..... ..++|.|..++.+++..++..++.+|++++
T Consensus 372 ~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt 449 (810)
T 3now_A 372 DGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLC 449 (810)
T ss_dssp TTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHc
Confidence 11346789999999888 899999999999988753 333332332 468899999999999999999999999998
Q ss_pred hhhcch----------------------------------h-hhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchh
Q psy14014 356 PILGKH----------------------------------N-TVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ 400 (615)
Q Consensus 356 ~~~g~~----------------------------------~-~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 400 (615)
.....+ . .....+|.|.++++.+++.+|..|+.+|..+.. +.
T Consensus 450 ~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~---d~ 526 (810)
T 3now_A 450 NAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG---LK 526 (810)
T ss_dssp TCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT---SH
T ss_pred CCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC---CH
Confidence 743100 0 112468999999999999999999999998863 22
Q ss_pred HHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhH-----HHHHHHHHHHh
Q psy14014 401 QWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFF-----DEKLNALCMTW 475 (615)
Q Consensus 401 ~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~-----~~~l~~~l~~~ 475 (615)
..+..+.-...+ |.+..++.+.....|..++.+|..++....++.. ....+|.+..+
T Consensus 527 ~~r~~Vv~~Gai------------------p~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~L 588 (810)
T 3now_A 527 ELRGKVVQEGGV------------------KALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNL 588 (810)
T ss_dssp HHHHHHHHTTHH------------------HHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHT
T ss_pred HHHHHHHHCCCH------------------HHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHH
Confidence 223222000112 6777888888889999999999999865444321 12367888998
Q ss_pred cCCc-chHHHHHHHHHHHHHHHHhChH----HhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhCh-hhHH--HhhH
Q psy14014 476 LVDH-VYAIREAATLNLKKLVEQFGSE----WAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGP-TVTA--NFLL 547 (615)
Q Consensus 476 l~d~-~~~vR~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~-~~~~--~~i~ 547 (615)
+... ....+..|+.+|..++.. +++ ......+|.|..++.++++.+|..|++++++++..-.. ..+. ...+
T Consensus 589 L~~~~~~l~~~eAl~AL~NLa~~-~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l 667 (810)
T 3now_A 589 LQQDCTALENFESLMALTNLASM-NESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRV 667 (810)
T ss_dssp TSTTSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHH
T ss_pred hCCCCcHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcH
Confidence 8754 334566889999988753 221 12234789999999999999999999999999753111 1122 3578
Q ss_pred HHHHhhCCCCCchHHHHHHHHHHHHhHhhhh--h-hHH-hhHHHHHhhhcCCCCccHHHHHHHHHHHHhh
Q psy14014 548 PTVLNMAGDNVANVRFNVAKTLQKIGPILET--N-VIQ-SQVKPALDKLNGDTDVDVKYFAQEAISSIAD 613 (615)
Q Consensus 548 ~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~--~-~~~-~~~~~~l~~l~~d~d~~v~~~a~~a~~~~~~ 613 (615)
|.|..++..++..+|..|+++|+.+....+. . ... ....+.+..|+.+.|.+++..|..|+..+..
T Consensus 668 ~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 668 KFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999874321 1 222 3566677778889999999999999988764
No 18
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.90 E-value=4.9e-21 Score=197.42 Aligned_cols=384 Identities=10% Similarity=0.072 Sum_probs=283.4
Q ss_pred HHHHHHhhccCchhHHHHHHHHHHHHHhhcCh---hh-HHH-hHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHhCc---
Q psy14014 208 IPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ---SD-VEQ-LVMPTLRQCSGDT-SWRVRYMVADKFTDLQKAVGP--- 278 (615)
Q Consensus 208 l~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~-~~~-~l~~~l~~~~~d~-~~~vR~~~~~~l~~l~~~~~~--- 278 (615)
+|.+.+.++++++.+|..|+..+..+...... +. ... .++|.+.+++.++ ++.+|..++.+++.++.....
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 66677777777888888888888876542111 11 222 5788888888887 889999999999888752111
Q ss_pred cchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCC-CCHHHHHHHHHHHHhhchh
Q psy14014 279 EITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVAD-PNQHVKSALASVIMGLSPI 357 (615)
Q Consensus 279 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d-~~~~vR~~~~~~l~~l~~~ 357 (615)
......++|.+.++++++++++|..|+.+|+.++...+ ..+.......++|.+..++.+ .++.+|..++++++.++..
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDST-MCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCH-HHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 11224689999999999999999999999999887432 122222334688999998885 7999999999999999864
Q ss_pred hc---chhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHH
Q psy14014 358 LG---KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIV 434 (615)
Q Consensus 358 ~g---~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~ 434 (615)
.+ .......++|.+.+++.+.++.++..++.++..+...... ......-...+ |.+.
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~~i------------------~~L~ 240 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPND--KIQAVIDAGVC------------------RRLV 240 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHH--HHHHHHHTTTH------------------HHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcH--HHHHHHHcCcH------------------HHHH
Confidence 31 1233467899999999999999999999999887653211 11110000111 6777
Q ss_pred HhhhcCCchHHHHHHHHhHHHHhhhChH---hHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhCh---HHhhhchh
Q psy14014 435 ELAEDSKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGS---EWAQSTVI 508 (615)
Q Consensus 435 ~~~~~~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i~ 508 (615)
.++.++++.+|..++.+++.++...+.. .....++|.+.+++.++++.+|..|+.+++.++..... ......++
T Consensus 241 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l 320 (450)
T 2jdq_A 241 ELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIF 320 (450)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH
T ss_pred HHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence 8888999999999999999997643221 12235788999999999999999999999999752211 11224688
Q ss_pred HHHHhhhcCCCchHHHHHHHHHHHHHhhhChhh----HHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhh-----
Q psy14014 509 PKVVAMSRDQNYLHRMTCLFCINVLAEACGPTV----TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN----- 579 (615)
Q Consensus 509 ~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~----- 579 (615)
|.+.+++.++++.+|..+++++++++...+++. +...++|.|..++.++++.||..++.+|..+....+..
T Consensus 321 ~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~ 400 (450)
T 2jdq_A 321 PALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNG 400 (450)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccc
Confidence 999999999999999999999999987644332 23568999999999999999999999999998754321
Q ss_pred ----hHHhhH-----HHHHhhhcCCCCccHHHHHHHHHHHHh
Q psy14014 580 ----VIQSQV-----KPALDKLNGDTDVDVKYFAQEAISSIA 612 (615)
Q Consensus 580 ----~~~~~~-----~~~l~~l~~d~d~~v~~~a~~a~~~~~ 612 (615)
.+...+ .+.+..|..+++.+|+..|..+++.+-
T Consensus 401 ~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 401 TGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp SCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 112222 355677788899999999999998764
No 19
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.90 E-value=5.3e-21 Score=201.02 Aligned_cols=386 Identities=11% Similarity=0.086 Sum_probs=288.8
Q ss_pred hhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcCh----hhHHHhHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHhC--
Q psy14014 205 TDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ----SDVEQLVMPTLRQCSGDT-SWRVRYMVADKFTDLQKAVG-- 277 (615)
Q Consensus 205 ~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~-~~~vR~~~~~~l~~l~~~~~-- 277 (615)
...+|.+.+.++++++.+|..|+..+..+...... ......++|.+.+++.++ ++.+|..++.+|+.++....
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 34577777777888888888888888887654321 122345788999999887 89999999999998875211
Q ss_pred -ccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhch
Q psy14014 278 -PEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSP 356 (615)
Q Consensus 278 -~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~ 356 (615)
........+|.+..++++.++++|..|+.+|..++..-+ ..+.......++|.+..++.+.++.+|..++++|..++.
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST-DYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCc-cchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence 111124678999999999999999999999999986422 122223345689999999999999999999999999986
Q ss_pred hhc---chhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHH
Q psy14014 357 ILG---KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSI 433 (615)
Q Consensus 357 ~~g---~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i 433 (615)
.-+ .......++|.+.+++.+.++.|+..++.+|..+...... . .+.. + ...+. |.+
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~-~-~~~~-----~------------~~~~v-~~L 304 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQE-A-IQAV-----I------------DVRIP-KRL 304 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHH-H-HHHH-----H------------HTTCH-HHH
T ss_pred CCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHH-H-HHHH-----H------------hcCcH-HHH
Confidence 431 1233457899999999999999999999999888643211 1 1111 0 00011 678
Q ss_pred HHhhhcCCchHHHHHHHHhHHHHhhhCh---HhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHH----hhhc
Q psy14014 434 VELAEDSKWRVRLAIIEYMPLLAGQLGV---EFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEW----AQST 506 (615)
Q Consensus 434 ~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~ 506 (615)
..++.++++.+|..++.+++.++...+. ......++|.+..++.++++.+|..|+.+++.++.. +++. ....
T Consensus 305 v~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~-~~~~~~~~~~~~ 383 (530)
T 1wa5_B 305 VELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG-NTEQIQAVIDAN 383 (530)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTT
T ss_pred HHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCC
Confidence 8888899999999999999998753221 223346889999999999999999999999999753 2221 2245
Q ss_pred hhHHHHhhhcCCCchHHHHHHHHHHHHHhhhCh--hh----HHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhh-
Q psy14014 507 VIPKVVAMSRDQNYLHRMTCLFCINVLAEACGP--TV----TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN- 579 (615)
Q Consensus 507 i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~--~~----~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~- 579 (615)
++|.|..++.++++.+|..++++++.++...++ +. +...++|.|..++.++++.||..++.+|..+....+..
T Consensus 384 ~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~ 463 (530)
T 1wa5_B 384 LIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADK 463 (530)
T ss_dssp CHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 889999999999999999999999999876543 22 23468999999999999999999999999998754321
Q ss_pred --------hH-----HhhHHHHHhhhcCCCCccHHHHHHHHHHHHh
Q psy14014 580 --------VI-----QSQVKPALDKLNGDTDVDVKYFAQEAISSIA 612 (615)
Q Consensus 580 --------~~-----~~~~~~~l~~l~~d~d~~v~~~a~~a~~~~~ 612 (615)
.+ .....+.+..|.++++.+|++.|..++..+-
T Consensus 464 ~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 464 EARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 509 (530)
T ss_dssp HHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHS
T ss_pred hcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 11 1224567777889999999999999998764
No 20
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.90 E-value=7e-21 Score=207.55 Aligned_cols=520 Identities=13% Similarity=0.023 Sum_probs=343.3
Q ss_pred hHHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcH-HHHHHHHHHhccccCCCCCcc-h--hh
Q psy14014 14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAEQLGTFTPNVGGPE-Y--VH 89 (615)
Q Consensus 14 ~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~-~vr~~a~~~l~~l~~~~~~~~-~--~~ 89 (615)
.+..++..|.+++...|..+.+.+...... ......+|.|..++.+++ .||..++.+|+.++....... . .+
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a~~~l~~~~~~----~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~ 191 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAVVNLINYQDDA----ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP 191 (780)
T ss_dssp ----------CCSCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCH
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHhhhHH----HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhcc
Confidence 367889999999999998888888755332 133456666666666666 599999999999876321000 0 12
Q ss_pred hchHHHhhhhc-CchhHHHHHHHHHHHHHHhhcCh--hHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCCh---h
Q psy14014 90 CLLPPLESLAT-VEETVVRDKAVESLRLISAQHSP--HDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA---G 163 (615)
Q Consensus 90 ~l~~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~---~ 163 (615)
..++.|..++. +++..+|..|+.+|..++..-.. .......+|.+..+..+++..+|..|+..+..++..-.. .
T Consensus 192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~ 271 (780)
T 2z6g_A 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMA 271 (780)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHH
Confidence 35666655554 45889999999999997654221 122345788898988888888999999988887654322 1
Q ss_pred h-HHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhc---hhhhHhhhHHHHHHhhccCchh-HHHHHHHHHHHHHhhcC
Q psy14014 164 V-KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE---VDYLKTDIIPMFVNLAQDEQDS-VRLLAVEACVSIASLLS 238 (615)
Q Consensus 164 ~-~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~ll~~l~~~~~d~~~~-vr~~a~~~l~~l~~~~~ 238 (615)
+ ....++.+..++.++++.+|..++.++..++.... ........++.+..++++.+.+ ++..+..++..++..-.
T Consensus 272 v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~ 351 (780)
T 2z6g_A 272 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS 351 (780)
T ss_dssp HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTT
T ss_pred HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChH
Confidence 2 24577888999999999999999999988774211 1123345678888888876654 45567777777775322
Q ss_pred h--hhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcc
Q psy14014 239 Q--SDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLD 316 (615)
Q Consensus 239 ~--~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 316 (615)
. ......++|.+..++.+.+..++..++.++..++...........++|.+.+++++.++++|..|+.+|..+...-
T Consensus 352 ~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~- 430 (780)
T 2z6g_A 352 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN- 430 (780)
T ss_dssp HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC-
T ss_pred HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-
Confidence 1 1122347899999999999999999999999998765544344679999999999999999999999999987642
Q ss_pred ccchhHHHHHhhHHHHHHhhCC-CC-HHHHHHHHHHHHhhchhhcch-----h-hhhhhHHHHHHhhcCCC-hhHHHHHH
Q psy14014 317 AYNQENIIMTYILPYVKDLVAD-PN-QHVKSALASVIMGLSPILGKH-----N-TVDHLLPLFLSQLKDEC-PEVRLNII 387 (615)
Q Consensus 317 ~~~~~~~~~~~l~p~l~~~~~d-~~-~~vR~~~~~~l~~l~~~~g~~-----~-~~~~l~p~l~~~l~d~~-~~vr~~a~ 387 (615)
.+.+........+|.|.+++.+ .+ ..+|..++.+|+.++...+.. . .....+|.+.+++.+.+ +.+|..++
T Consensus 431 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~ 510 (780)
T 2z6g_A 431 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 510 (780)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHH
Confidence 1112112224467777777765 33 499999999999997533221 1 12356899999998766 49999999
Q ss_pred HhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHH
Q psy14014 388 SNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEK 467 (615)
Q Consensus 388 ~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 467 (615)
.+|+.+... ... +..+ .+ ..+. |.+.+++.+.++.+|..++.++..-
T Consensus 511 ~aL~nLa~~--~~~-~~~i--~~---------------~g~i-~~Lv~lL~~~~~~~~~~aa~al~nq------------ 557 (780)
T 2z6g_A 511 GLIRNLALC--PAN-HAPL--RE---------------QGAI-PRLVQLLVRAHQDTQRRTSMGGTQQ------------ 557 (780)
T ss_dssp HHHHHHHSS--HHH-HHHH--HH---------------TTHH-HHHHHHHHHHHHHHHHTTC------------------
T ss_pred HHHHHHhcC--HHH-HHHH--HH---------------CCCH-HHHHHHHHhcchhHHHHHhhccccc------------
Confidence 999888642 111 1111 00 0011 4556666655555555444332210
Q ss_pred HHHHHHHhc-CCcchHHHHHHHHHHHHHHHHhCh--HHhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhCh-h-hH
Q psy14014 468 LNALCMTWL-VDHVYAIREAATLNLKKLVEQFGS--EWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGP-T-VT 542 (615)
Q Consensus 468 l~~~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~-~-~~ 542 (615)
+ +. ......++..++.+|+.++..-.. .......+|.|.+++.++++.+|..++.+++.++..-.. . ..
T Consensus 558 --~----~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~ 631 (780)
T 2z6g_A 558 --Q----FVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIE 631 (780)
T ss_dssp --C----CSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred --h----hhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 0 00 112345788888888887631100 011245789999999999999999999999998733111 1 11
Q ss_pred HHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhh
Q psy14014 543 ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE 577 (615)
Q Consensus 543 ~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~ 577 (615)
....++.|.+++.+++++||..|..+|.++...-+
T Consensus 632 ~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 632 AEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 23478889999999999999999999999986443
No 21
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.89 E-value=2.5e-19 Score=190.06 Aligned_cols=579 Identities=11% Similarity=0.075 Sum_probs=394.5
Q ss_pred hHHHHHHHhcCccHHHHHHHHhcHHHHHHHh---------Ccc--------hhhccchhhhhhhcCCcH---HHHHHHHH
Q psy14014 14 PIAVLIDELKNEDVQLRLNSIKKLSTIALAL---------GQE--------RTRGELIPFLTETIYDED---EVLLALAE 73 (615)
Q Consensus 14 ~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~---------~~~--------~~~~~ll~~l~~~~~~~~---~vr~~a~~ 73 (615)
.+..+..-|.+++.+.-.++.+.+-.+-..+ +++ +....++..|...+.+.. ..|..+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~ 172 (810)
T 3now_A 93 GVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIE 172 (810)
T ss_dssp CHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHH
Confidence 4566777777877776667776666664322 121 122344444555666654 38999998
Q ss_pred HhccccCCCCC--cchhhh---chHHHhhhhcCc----------hhHHHHHHHHHHHHHHhhcCh----hHHhhhHHHHH
Q psy14014 74 QLGTFTPNVGG--PEYVHC---LLPPLESLATVE----------ETVVRDKAVESLRLISAQHSP----HDLEAHFVPLV 134 (615)
Q Consensus 74 ~l~~l~~~~~~--~~~~~~---l~~~l~~l~~~~----------~~~vr~~a~~~l~~l~~~~~~----~~~~~~~l~~l 134 (615)
.|.+-+.+-.. ...+.. +..+|.-...-+ .+++|..+..++.++.+.+.- +...+.+-.++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 252 (810)
T 3now_A 173 LITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYI 252 (810)
T ss_dssp HHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHH
T ss_pred HHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 88876654321 111111 111221111111 468999999999999999874 33444455566
Q ss_pred HHhhcCCCcchhhhHHhhhhhhccCCChhh-----HHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhch-hh-hHhhh
Q psy14014 135 QRLASGDWFTSRTSACGLFSVCYPRVTAGV-----KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV-DY-LKTDI 207 (615)
Q Consensus 135 ~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~-----~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-~~-~~~~l 207 (615)
...........+..|+..+..+++...+.. ....++.+..++.+++..++..++.+++..+..-.. +. ....+
T Consensus 253 ~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv 332 (810)
T 3now_A 253 KDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGV 332 (810)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHH
T ss_pred HHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCc
Confidence 555555555666777777777776665432 235778889999999999999999999997654211 11 22334
Q ss_pred HHHHHHhhccCchhHHHHHHHHHHHHHhhcCh--------hhHHHhHHHHHHHhcCCC--ChHHHHHHHHHHHHHHHHhC
Q psy14014 208 IPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ--------SDVEQLVMPTLRQCSGDT--SWRVRYMVADKFTDLQKAVG 277 (615)
Q Consensus 208 l~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--------~~~~~~l~~~l~~~~~d~--~~~vR~~~~~~l~~l~~~~~ 277 (615)
|.+..+++++++.+|..|+.+|..++...+. +.-...+++.+.+++.++ +..+|..+++.|..++....
T Consensus 333 -~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~ 411 (810)
T 3now_A 333 -DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAE 411 (810)
T ss_dssp -HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHH
T ss_pred -HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcH
Confidence 9999999988899999999999998754321 111345788888888777 78899999999998874322
Q ss_pred c--cch-hhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcccc---------------------c-------h---hHH
Q psy14014 278 P--EIT-KTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAY---------------------N-------Q---ENI 323 (615)
Q Consensus 278 ~--~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---------------------~-------~---~~~ 323 (615)
. ... ...++|.|..+++..++.++..|+.+|..+....... . . ...
T Consensus 412 vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~V 491 (810)
T 3now_A 412 CKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVL 491 (810)
T ss_dssp HHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHH
Confidence 1 111 2368999999999999999999999999998743110 0 0 112
Q ss_pred HHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc-hhh-hhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhH
Q psy14014 324 IMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK-HNT-VDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ 401 (615)
Q Consensus 324 ~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~-~~~-~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 401 (615)
+....+|.|..++.++++.+|..++++|++++..-.. ... ....+|.++.++.+.++.+|..|+.+|..+.....+..
T Consensus 492 veaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~ 571 (810)
T 3now_A 492 ANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEV 571 (810)
T ss_dssp HHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhh
Confidence 2345789999999999999999999999999743111 111 23468999999999889999999999998865433221
Q ss_pred HHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcC-CchHHHHHHHHhHHHHhhh---ChHhHHHHHHHHHHHhcC
Q psy14014 402 WRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDS-KWRVRLAIIEYMPLLAGQL---GVEFFDEKLNALCMTWLV 477 (615)
Q Consensus 402 ~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~-~~~vr~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~ 477 (615)
.-....+.+.+ |.+..++... +...+..++.+|..++..- .........+|.+..++.
T Consensus 572 ~~~~~~~~~aI------------------ppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~ 633 (810)
T 3now_A 572 SFSGQRSLDVI------------------RPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLM 633 (810)
T ss_dssp HTTTHHHHHTH------------------HHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH
T ss_pred hhcchhhhcHH------------------HHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc
Confidence 00000001122 5566676644 3334557888888887532 112233456888999999
Q ss_pred CcchHHHHHHHHHHHHHHHHhChHH---hh--hchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhCh---hhHH-HhhHH
Q psy14014 478 DHVYAIREAATLNLKKLVEQFGSEW---AQ--STVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGP---TVTA-NFLLP 548 (615)
Q Consensus 478 d~~~~vR~~a~~~l~~l~~~~~~~~---~~--~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~---~~~~-~~i~~ 548 (615)
+++..+|..|+.+++.++. +++. +. ...++.|..++..++..+|..|+++|+.+...... ..+. ...+|
T Consensus 634 s~~~~Vq~~A~~~L~NLa~--~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~ 711 (810)
T 3now_A 634 EDHLYLTRAAAQCLCNLVM--SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLD 711 (810)
T ss_dssp SCCTTHHHHHHHHHHHHTT--SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHH
T ss_pred CCCHHHHHHHHHHHHHHhC--ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHH
Confidence 9999999999999999975 3321 11 24788999999999999999999999999863221 2233 56889
Q ss_pred HHHhhCCCCCchHHHHHHHHHHHHhHhhh---hhhHHhhHHHHHhhhcCC---CCccHHHHHHHHHHHHhh
Q psy14014 549 TVLNMAGDNVANVRFNVAKTLQKIGPILE---TNVIQSQVKPALDKLNGD---TDVDVKYFAQEAISSIAD 613 (615)
Q Consensus 549 ~l~~~~~D~~~~vr~~a~~~l~~l~~~~~---~~~~~~~~~~~l~~l~~d---~d~~v~~~a~~a~~~~~~ 613 (615)
.|..++.+++..+|..++.++.++....+ .........+.+..++.+ ++.++.+.|.+|++.+-+
T Consensus 712 ~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 712 ILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999986322 112234456666776543 479999999999998753
No 22
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.89 E-value=1e-20 Score=195.13 Aligned_cols=384 Identities=9% Similarity=0.037 Sum_probs=286.1
Q ss_pred HHHHHHHhCCCChHHHHHHHHhHHHHHHHh-ch---hhhHh-hhHHHHHHhhccC-chhHHHHHHHHHHHHHhhcChh--
Q psy14014 169 RSHFRNLCQDDTPMVRRAAAGKLGELAKVV-EV---DYLKT-DIIPMFVNLAQDE-QDSVRLLAVEACVSIASLLSQS-- 240 (615)
Q Consensus 169 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~-~~---~~~~~-~ll~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~-- 240 (615)
++.+.+.++++++.+|..++..+..++... .+ ..... .++|.+.++++++ ++.+|..|..++..++...+..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 456677778889999999999999886521 11 12233 7899999999988 8999999999999988643321
Q ss_pred -hHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC---ccchhhhHHHHHHHhhcC-CcHHHHHHHHHHHHHHHhhc
Q psy14014 241 -DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVG---PEITKTDLVQAFQMLLKD-SEAEVRAAAANKVRDFCQNL 315 (615)
Q Consensus 241 -~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~ 315 (615)
.....++|.+.++++++++.+|..++.+|+.++.... .......++|.+..++++ .++++|..|+.++..++..-
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 1234689999999999999999999999999986321 111123678999999985 78999999999999998754
Q ss_pred cccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc---hhhhhhhHHHHHHhhcCCChhHHHHHHHhhhH
Q psy14014 316 DAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK---HNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 392 (615)
Q Consensus 316 ~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~---~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~ 392 (615)
.+.... .....++|.+.+++.+.++.+|..+++++..++..... ......++|.+.+++.++++.+|..++.+++.
T Consensus 182 ~~~~~~-~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 260 (450)
T 2jdq_A 182 SPPPEF-AKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260 (450)
T ss_dssp SSCCCG-GGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCCH-HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence 222111 22367899999999999999999999999999864321 11223578999999999999999999999988
Q ss_pred hhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhCh---HhHHHHHH
Q psy14014 393 VNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGV---EFFDEKLN 469 (615)
Q Consensus 393 l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~ 469 (615)
+....+. ..+.. + ...+. |.+..+++++++.+|..++.+++.++..... ......++
T Consensus 261 l~~~~~~--~~~~~-----~------------~~~~l-~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l 320 (450)
T 2jdq_A 261 IVTGDDI--QTQVI-----L------------NCSAL-QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIF 320 (450)
T ss_dssp HTTSCHH--HHHHH-----H------------TTTHH-HHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH
T ss_pred HhhCChH--HHHHH-----H------------HCccH-HHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence 8653221 11111 1 00011 6778888899999999999999999752211 12234688
Q ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHHHhChHH----hhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChh-----
Q psy14014 470 ALCMTWLVDHVYAIREAATLNLKKLVEQFGSEW----AQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPT----- 540 (615)
Q Consensus 470 ~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~----- 540 (615)
|.+.+++.+++..+|..|+.+++.++...+++. ....++|.|.+++.++++.+|..++.+++.+....+..
T Consensus 321 ~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~ 400 (450)
T 2jdq_A 321 PALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNG 400 (450)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccc
Confidence 889999999999999999999999987644332 22458999999999999999999999999998754321
Q ss_pred ----hHHH-----hhHHHHHhhCCCCCchHHHHHHHHHHHHh
Q psy14014 541 ----VTAN-----FLLPTVLNMAGDNVANVRFNVAKTLQKIG 573 (615)
Q Consensus 541 ----~~~~-----~i~~~l~~~~~D~~~~vr~~a~~~l~~l~ 573 (615)
.+.. ..++.+..+..+++..|+..+..++..+.
T Consensus 401 ~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 401 TGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp SCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 1111 23566777778888888888888888775
No 23
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.89 E-value=2.6e-20 Score=197.20 Aligned_cols=471 Identities=12% Similarity=0.088 Sum_probs=324.7
Q ss_pred hHHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcHH-HHHHHHHHhccccCCCCCcchhhhch
Q psy14014 14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLL 92 (615)
Q Consensus 14 ~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~-vr~~a~~~l~~l~~~~~~~~~~~~l~ 92 (615)
....+++.++++|...|..+.-.+...+.. .++ ...-+++.+.+-++++++ +|..|...|+.+. .++..+.++
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~-~~e-~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~----~~~~~~~l~ 123 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKS-QPD-MAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR----VDKITEYLC 123 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHH-SHH-HHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC----SGGGHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHccc-Cch-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC----hHHHHHHHH
Confidence 355667788999999998888888877653 233 223344555555677775 9999999998875 467788889
Q ss_pred HHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHH
Q psy14014 93 PPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHF 172 (615)
Q Consensus 93 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l 172 (615)
|.+..++.|+++.||..|+.++.++....++ .+. ...+++.+
T Consensus 124 ~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~-~~~-------------------------------------~~~~~~~l 165 (591)
T 2vgl_B 124 EPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ-MVE-------------------------------------DQGFLDSL 165 (591)
T ss_dssp HHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC-CHH-------------------------------------HHHHHHHH
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHhhChh-hcc-------------------------------------cccHHHHH
Confidence 9999999999999999999999998875442 111 01344556
Q ss_pred HHHhCCCChHHHHHHHHhHHHHHHHhchh---hhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHH
Q psy14014 173 RNLCQDDTPMVRRAAAGKLGELAKVVEVD---YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPT 249 (615)
Q Consensus 173 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~ 249 (615)
..++.|+++.||..++.+++.++..-+.. ......++.+...+.+.+++.+...+..+..++.. ++.....+++.
T Consensus 166 ~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~--~~~~~~~~l~~ 243 (591)
T 2vgl_B 166 RDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK--DDREAQSICER 243 (591)
T ss_dssp HHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC--SHHHHHHHHHH
T ss_pred HHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC--ChHHHHHHHHH
Confidence 77888999999999999999987653321 11223455555666677888887777666544321 12234568888
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHHh--Cccch---hhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHH
Q psy14014 250 LRQCSGDTSWRVRYMVADKFTDLQKAV--GPEIT---KTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENII 324 (615)
Q Consensus 250 l~~~~~d~~~~vR~~~~~~l~~l~~~~--~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 324 (615)
+..++++.++.|+..++.++..+.... ..+.. ...+.+.+..++ ++++++|..|+.++..+....+....
T Consensus 244 l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~---- 318 (591)
T 2vgl_B 244 VTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILK---- 318 (591)
T ss_dssp HTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTT----
T ss_pred HHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHH----
Confidence 888899999999999999998876533 11211 124555666555 58899999999999999875432211
Q ss_pred HHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHH
Q psy14014 325 MTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRV 404 (615)
Q Consensus 325 ~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 404 (615)
+ .+..+....+|+ +.||..+++.+..++.. ...+.+++.+.+++++.++++|..++.+++.+...+... ..
T Consensus 319 -~-~~~~~~~~~~d~-~~Ir~~al~~L~~l~~~----~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~-~~- 389 (591)
T 2vgl_B 319 -Q-EIKVFFVKYNDP-IYVKLEKLDIMIRLASQ----ANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQS-AE- 389 (591)
T ss_dssp -T-CTTTTSCCTTSC-HHHHHHHHHHHHHTCCS----STHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHH-HH-
T ss_pred -H-HHHhheeccCCh-HHHHHHHHHHHHHHCCh----hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhH-HH-
Confidence 1 111111122444 99999999998887642 224567888889999989999999999999887655321 11
Q ss_pred HHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcC-CcchHH
Q psy14014 405 RLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLV-DHVYAI 483 (615)
Q Consensus 405 ~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~v 483 (615)
.++ +.+.+++++....++..++..+..+....+.. .+..++.+.+.+. +....+
T Consensus 390 -----~~v------------------~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~--~~~~v~~L~~~l~~~~~~~~ 444 (591)
T 2vgl_B 390 -----RCV------------------STLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK--YESIIATLCENLDSLDEPDA 444 (591)
T ss_dssp -----HHH------------------HHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS--CCTTHHHHHHTTTTCCSHHH
T ss_pred -----HHH------------------HHHHHHHcccchHHHHHHHHHHHHHHHHCcch--HHHHHHHHHHHHHhccCHHH
Confidence 113 46677778888788888888888887655431 1234556667665 456788
Q ss_pred HHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCC-CCchHH
Q psy14014 484 REAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGD-NVANVR 562 (615)
Q Consensus 484 R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D-~~~~vr 562 (615)
|.++++++|..+..... ...++..+.+.+.+.++.+|..++.++..+....+... .+.+...+..+..| .+++||
T Consensus 445 ~~~~~wilGey~~~~~~---~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~-~~~i~~ll~~~~~d~~d~evr 520 (591)
T 2vgl_B 445 RAAMIWIVGEYAERIDN---ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSET-QELVQQVLSLATQDSDNPDLR 520 (591)
T ss_dssp HHHHHHHHHTTCTTCTT---HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTT-HHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHcccccccC---HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHH-HHHHHHHHHHhhhcCCChHHH
Confidence 99999999888665432 23566667766677889999999999999987654321 23334444444456 678999
Q ss_pred HHHHHHHHHHh
Q psy14014 563 FNVAKTLQKIG 573 (615)
Q Consensus 563 ~~a~~~l~~l~ 573 (615)
..|...+.-+.
T Consensus 521 dRA~~y~~ll~ 531 (591)
T 2vgl_B 521 DRGYIYWRLLS 531 (591)
T ss_dssp HHHHHHHTTTT
T ss_pred HHHHHHHHHHC
Confidence 99988776653
No 24
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.89 E-value=1.8e-20 Score=196.90 Aligned_cols=386 Identities=10% Similarity=0.044 Sum_probs=288.8
Q ss_pred HHHHHHHhCCCChHHHHHHHHhHHHHHHHhch----hhhHhhhHHHHHHhhccC-chhHHHHHHHHHHHHHhhcChh---
Q psy14014 169 RSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV----DYLKTDIIPMFVNLAQDE-QDSVRLLAVEACVSIASLLSQS--- 240 (615)
Q Consensus 169 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~ll~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~--- 240 (615)
++.+...+.++++.+|..++..|..++..... ......++|.+.++++++ ++.+|..|+.++..++...+..
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 168 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV 168 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 34556666778889999999888888653211 223457899999999887 8899999999999887643321
Q ss_pred hHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh---CccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccc
Q psy14014 241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAV---GPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDA 317 (615)
Q Consensus 241 ~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 317 (615)
......+|.+..++.++++.+|..++.+|+.++... ........++|.+..++.+.++++|..|+.+|..++..-.+
T Consensus 169 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 248 (530)
T 1wa5_B 169 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP 248 (530)
T ss_dssp HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSS
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCC
Confidence 112356888888888899999999999999988531 11112246789999999999999999999999999875412
Q ss_pred cchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc--hhh-hhhhHHHHHHhhcCCChhHHHHHHHhhhHhh
Q psy14014 318 YNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK--HNT-VDHLLPLFLSQLKDECPEVRLNIISNLDCVN 394 (615)
Q Consensus 318 ~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~--~~~-~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~ 394 (615)
.. .......++|.+..++.+.++.+|..++++|+.++..... ... ...++|.+.+++.+.++.+|..++.+++.+.
T Consensus 249 ~~-~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~ 327 (530)
T 1wa5_B 249 QP-DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 327 (530)
T ss_dssp CC-CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred CC-cHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHH
Confidence 11 1234577899999999999999999999999999864221 112 2367899999999999999999999998876
Q ss_pred hhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhCh---HhHHHHHHHH
Q psy14014 395 EVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGV---EFFDEKLNAL 471 (615)
Q Consensus 395 ~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~ 471 (615)
...+ ...+.. + ...+. |.+..++.++++.+|..++.+++.++..... ..+...++|.
T Consensus 328 ~~~~--~~~~~~-----~------------~~~~l-~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~ 387 (530)
T 1wa5_B 328 TGND--LQTQVV-----I------------NAGVL-PALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPP 387 (530)
T ss_dssp TSCH--HHHHHH-----H------------HTTHH-HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHH
T ss_pred cCCH--HHHHHH-----H------------HcchH-HHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHH
Confidence 4322 111111 0 00111 6778888899999999999999998752211 1123457888
Q ss_pred HHHhcCCcchHHHHHHHHHHHHHHHHhCh--HH----hhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChh-----
Q psy14014 472 CMTWLVDHVYAIREAATLNLKKLVEQFGS--EW----AQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPT----- 540 (615)
Q Consensus 472 l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~~----~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~----- 540 (615)
+..++.+++..+|..|+.+++.++...++ +. ....++|.|..++.++++.+|..++.++..+....+..
T Consensus 388 L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~ 467 (530)
T 1wa5_B 388 LVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARG 467 (530)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhccc
Confidence 89999889999999999999999986543 22 22458999999999999999999999999998764331
Q ss_pred ----hH-----HHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHh
Q psy14014 541 ----VT-----ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI 575 (615)
Q Consensus 541 ----~~-----~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~ 575 (615)
.+ ....++.|..+..+++++|+..+..++..+...
T Consensus 468 ~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 468 LNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp CSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred ccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence 11 124578888899999999999999999888753
No 25
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.87 E-value=1.8e-19 Score=189.42 Aligned_cols=384 Identities=11% Similarity=0.090 Sum_probs=277.6
Q ss_pred hHHHHHHhhccCchhHHHHHHHHHHHHHhhcCh----hhHHHhHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHhCc---
Q psy14014 207 IIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ----SDVEQLVMPTLRQCSGDTS-WRVRYMVADKFTDLQKAVGP--- 278 (615)
Q Consensus 207 ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~~-~~vR~~~~~~l~~l~~~~~~--- 278 (615)
-+|.+.+.+.++++.+|..|+.++..++..-+. ......++|.+.+++.+++ +.+|..++.+|+.++.....
T Consensus 75 ~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 154 (528)
T 4b8j_A 75 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK 154 (528)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 356666666666777777777777776554331 1223346777777777765 78888888888877752110
Q ss_pred cchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhh-CCCCHHHHHHHHHHHHhhchh
Q psy14014 279 EITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLV-ADPNQHVKSALASVIMGLSPI 357 (615)
Q Consensus 279 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~-~d~~~~vR~~~~~~l~~l~~~ 357 (615)
.......+|.+..++.+++++||..|+.+|+.++..-+ ..+........+|.+..++ .+.++.++..++++|..++..
T Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~-~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSP-KCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCH-HHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCh-hhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 11123578999999999999999999999999876321 2222223345788888888 788999999999999999875
Q ss_pred hcc--hhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHH
Q psy14014 358 LGK--HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVE 435 (615)
Q Consensus 358 ~g~--~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~ 435 (615)
... ......++|.+.+++.+.++.++..++.+|..+...... ..+...-...+ |.+..
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~--~~~~~~~~g~v------------------~~Lv~ 293 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTND--KIQAVIEAGVC------------------PRLVE 293 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHH--HHHHHHHTTCH------------------HHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHH--HHHHHHHcCHH------------------HHHHH
Confidence 321 233457899999999999999999999999888643221 11111000111 67888
Q ss_pred hhhcCCchHHHHHHHHhHHHHhhhCh---HhHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHhChHH----hhhch
Q psy14014 436 LAEDSKWRVRLAIIEYMPLLAGQLGV---EFFDEKLNALCMTWLVDH-VYAIREAATLNLKKLVEQFGSEW----AQSTV 507 (615)
Q Consensus 436 ~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~----~~~~i 507 (615)
++.++++.+|..++.+++.++..... ......++|.+..++.++ +..+|..|+.+++.++.. ..+. ....+
T Consensus 294 lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~-~~~~~~~~~~~~~ 372 (528)
T 4b8j_A 294 LLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG-NKDQIQAVINAGI 372 (528)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTC
T ss_pred HHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCC
Confidence 89999999999999999999763211 112245688899999888 899999999999999863 2221 22458
Q ss_pred hHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhhH----HHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhh----
Q psy14014 508 IPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVT----ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN---- 579 (615)
Q Consensus 508 ~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~----~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~---- 579 (615)
+|.|..++.+.++.+|..++.++++++...++... ...+++.|..++.++++.++..++.+|..++...+..
T Consensus 373 i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~ 452 (528)
T 4b8j_A 373 IGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLA 452 (528)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 89999999999999999999999999876444332 3468899999999999999999999999998654320
Q ss_pred -----hH-----HhhHHHHHhhhcCCCCccHHHHHHHHHHHHh
Q psy14014 580 -----VI-----QSQVKPALDKLNGDTDVDVKYFAQEAISSIA 612 (615)
Q Consensus 580 -----~~-----~~~~~~~l~~l~~d~d~~v~~~a~~a~~~~~ 612 (615)
.+ .....+.+..|.++++.+|+..|...+..+-
T Consensus 453 ~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~ 495 (528)
T 4b8j_A 453 AGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 495 (528)
T ss_dssp TCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred cccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 11 2223456677888999999999999998764
No 26
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.87 E-value=2.9e-19 Score=189.73 Aligned_cols=472 Identities=11% Similarity=0.044 Sum_probs=322.9
Q ss_pred chHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHH
Q psy14014 91 LLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRS 170 (615)
Q Consensus 91 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~ 170 (615)
+.+-..+++.+++...|...--.+..++..- .++.-.+++.+..-..+++..+|..|+..++.+. .+++.+.+.+
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~--~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~---~~~~~~~l~~ 145 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDER--QDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG---SSEMCRDLAG 145 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC---CHHHHHHHHH
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC---CHHHHHHHHH
Confidence 3333445556777778877777666665542 2233345566666666778888888888888775 3566677888
Q ss_pred HHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh-hHHHhHHHH
Q psy14014 171 HFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS-DVEQLVMPT 249 (615)
Q Consensus 171 ~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~ 249 (615)
.+.+++.|+++.||+.|+.+++.+.+..+. ....+++.+..++.|.++.|+..|+.++..+++.-++- .....++|.
T Consensus 146 ~l~~~L~~~~~~VRk~A~~al~~l~~~~p~--~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~ 223 (618)
T 1w63_A 146 EVEKLLKTSNSYLRKKAALCAVHVIRKVPE--LMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQ 223 (618)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHHCGG--GGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHChH--HHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 889999999999999999999999986543 23468888899999999999999999999987643221 112234454
Q ss_pred HHHhcC---------------CCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhh------cCCcHHHHHHHHHHH
Q psy14014 250 LRQCSG---------------DTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLL------KDSEAEVRAAAANKV 308 (615)
Q Consensus 250 l~~~~~---------------d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l------~d~~~~vr~~a~~~l 308 (615)
+.+.+. .+++..+..+++.++.++..-+ .....+.+.+.+++ ++.+..|...|++++
T Consensus 224 l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~--~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i 301 (618)
T 1w63_A 224 LVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDD--DSSEAMNDILAQVATNTETSKNVGNAILYETVLTI 301 (618)
T ss_dssp HHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCH--HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence 443332 2467777888888887764211 11234555555544 234567888888888
Q ss_pred HHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHH
Q psy14014 309 RDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIIS 388 (615)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~ 388 (615)
..+.. . ........+.+..++.++++.+|..++.+++.++...+ .......+.+..++.|++..||..+++
T Consensus 302 ~~l~~----~---~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p--~~~~~~~~~i~~~l~d~d~~Ir~~ale 372 (618)
T 1w63_A 302 MDIKS----E---SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH--NAVQRHRSTIVDCLKDLDVSIKRRAME 372 (618)
T ss_dssp HHSCC----C---HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH--HHHGGGHHHHHHGGGSSCHHHHHHHHH
T ss_pred HhcCC----C---HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH--HHHHHHHHHHHHHccCCChhHHHHHHH
Confidence 76422 1 12234566778888899999999999999999876422 233445678888999999999999999
Q ss_pred hhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHH
Q psy14014 389 NLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKL 468 (615)
Q Consensus 389 ~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l 468 (615)
.+..++..-..+.. + +.+.+.+.+.+..+|..++..++.++..+.+. ....
T Consensus 373 lL~~l~~~~nv~~i---------v------------------~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~--~~~~ 423 (618)
T 1w63_A 373 LSFALVNGNNIRGM---------M------------------KELLYFLDSCEPEFKADCASGIFLAAEKYAPS--KRWH 423 (618)
T ss_dssp HHHHHCCSSSTHHH---------H------------------HHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCC--HHHH
T ss_pred HHHHHcccccHHHH---------H------------------HHHHHHHHhCCHHHHHHHHHHHHHHHHHhCcc--HHHH
Confidence 88776543221110 1 34555566677889999999999999987543 2334
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcC--CCchHHHHHHHHHHHHHhhhChh------
Q psy14014 469 NALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRD--QNYLHRMTCLFCINVLAEACGPT------ 540 (615)
Q Consensus 469 ~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d--~~~~~R~~a~~~l~~l~~~~~~~------ 540 (615)
++.+++++.+....++..+...+..+..... + ....+++.+...+.+ ........+++++|+.+......
T Consensus 424 v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p-~-l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~ 501 (618)
T 1w63_A 424 IDTIMRVLTTAGSYVRDDAVPNLIQLITNSV-E-MHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEE 501 (618)
T ss_dssp HHHHHHHHHHTGGGSCSSHHHHHHHHHHHSC-S-THHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSC
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHhcCh-h-HHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhccccccccc
Confidence 5666677766666677777777888876543 2 234466677666553 23334456899999998765320
Q ss_pred ---hHHHhhHHHHHhhCC--CCCchHHHHHHHHHHHHhHhhhhhhHHhhHHHHHhhhcCCCCccHHHHHHHHHHHHhh
Q psy14014 541 ---VTANFLLPTVLNMAG--DNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKYFAQEAISSIAD 613 (615)
Q Consensus 541 ---~~~~~i~~~l~~~~~--D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~d~~v~~~a~~a~~~~~~ 613 (615)
.....+.+.+..+++ ..++.||..+..++..+....+. ..+.+..++....+|.|.|||+.|.+.+..+..
T Consensus 502 ~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~--~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 502 PIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC--TVNRIKKVVSIYGSSIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp CCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS--CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc--hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 011234445555443 57889999999999999876542 256677788888899999999999999887653
No 27
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.87 E-value=7.9e-19 Score=188.59 Aligned_cols=501 Identities=13% Similarity=0.029 Sum_probs=301.7
Q ss_pred hHHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcch-hh--ccchhhhhhhcCCc-H-HHHHHHHHHhccccCCCCCcchh
Q psy14014 14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQER-TR--GELIPFLTETIYDE-D-EVLLALAEQLGTFTPNVGGPEYV 88 (615)
Q Consensus 14 ~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~-~~--~~ll~~l~~~~~~~-~-~vr~~a~~~l~~l~~~~~~~~~~ 88 (615)
.|..++.-++++|+.+|..|+..|..++....... .. ...++.+.+.+.+. + ++|..++..|..+... .+..
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~---~~~~ 91 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH---REGL 91 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS---HHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC---hhhH
Confidence 35555555666666666666666666654321110 11 12334444433321 2 3555555555544431 1111
Q ss_pred -----hhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChh
Q psy14014 89 -----HCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG 163 (615)
Q Consensus 89 -----~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~ 163 (615)
...+|.|..++.++++.+|..|+.+|.+++..-+... ..
T Consensus 92 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~------------------------------------~~ 135 (644)
T 2z6h_A 92 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK------------------------------------MA 135 (644)
T ss_dssp HHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHH------------------------------------HH
T ss_pred HHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhH------------------------------------HH
Confidence 1234445555555555555555555555544332110 00
Q ss_pred h-HHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhch---hhhHhhhHHHHHHhhccCc-hhHHHHHHHHHHHHHhhcC
Q psy14014 164 V-KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV---DYLKTDIIPMFVNLAQDEQ-DSVRLLAVEACVSIASLLS 238 (615)
Q Consensus 164 ~-~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~ 238 (615)
+ ....++.+..++++++++++..++.+|..++...+. .......++.+..++++.+ ..++..+..++..++..-.
T Consensus 136 v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~ 215 (644)
T 2z6h_A 136 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS 215 (644)
T ss_dssp HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTT
T ss_pred HHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcc
Confidence 1 233567778888888899999999999888752211 2233456788888887654 5677788888887764322
Q ss_pred hh--hHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcc
Q psy14014 239 QS--DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLD 316 (615)
Q Consensus 239 ~~--~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 316 (615)
.. ......+|.+..++.+++..+|..++.+|..++...........++|.+.+++++.++++|..|+.+|..++..-
T Consensus 216 ~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~- 294 (644)
T 2z6h_A 216 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN- 294 (644)
T ss_dssp HHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-
T ss_pred cHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-
Confidence 11 122347889999999999999999999999998765444444578999999999999999999999999987632
Q ss_pred ccchhHHHHHhhHHHHHHhhCCC--CHHHHHHHHHHHHhhchhhcch------hhhhhhHHHHHHhhcCCC-hhHHHHHH
Q psy14014 317 AYNQENIIMTYILPYVKDLVADP--NQHVKSALASVIMGLSPILGKH------NTVDHLLPLFLSQLKDEC-PEVRLNII 387 (615)
Q Consensus 317 ~~~~~~~~~~~l~p~l~~~~~d~--~~~vR~~~~~~l~~l~~~~g~~------~~~~~l~p~l~~~l~d~~-~~vr~~a~ 387 (615)
+..+........+|.|..++.+. .+.+|..++.+|+.++..-+.. ......+|.+.+++.+.+ +.++..++
T Consensus 295 ~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~ 374 (644)
T 2z6h_A 295 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 374 (644)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHH
Confidence 12222223345678888777653 3899999999999997532221 112357899999998765 69999999
Q ss_pred HhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHH
Q psy14014 388 SNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEK 467 (615)
Q Consensus 388 ~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 467 (615)
.++..+..... .. +.+.-...+ |.+.+++.+.++.+|..++.++..- .
T Consensus 375 ~~L~nLa~~~~--~~-~~i~~~~~i------------------~~Lv~lL~~~~~~vr~~a~~al~n~-----------~ 422 (644)
T 2z6h_A 375 GLIRNLALCPA--NH-APLREQGAI------------------PRLVQLLVRAHQDTQRRTSMGGTQQ-----------Q 422 (644)
T ss_dssp HHHHHHTTSGG--GH-HHHHHTTHH------------------HHHHHHHHHHHHHHTTC--------------------
T ss_pred HHHHHHccCHH--HH-HHHHHcCCH------------------HHHHHHHhccchhhhhHhhhccccc-----------h
Confidence 99988764321 11 111000112 5566666666666666555543320 0
Q ss_pred HHHHHHHhc-CCcchHHHHHHHHHHHHHHHHhChH--HhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhCh-hh-H
Q psy14014 468 LNALCMTWL-VDHVYAIREAATLNLKKLVEQFGSE--WAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGP-TV-T 542 (615)
Q Consensus 468 l~~~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~-~~-~ 542 (615)
.. ......++..+..++..++..-... ......+|.|.+++.++++.+|..++.++++++..-.. .. .
T Consensus 423 -------~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~ 495 (644)
T 2z6h_A 423 -------FVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIE 495 (644)
T ss_dssp --------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred -------hcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 00 1124557777777777766422111 11234788888888888888888888888888743111 11 1
Q ss_pred HHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHHHHHhhhc
Q psy14014 543 ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLN 593 (615)
Q Consensus 543 ~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~ 593 (615)
....++.|..++.+++++||..++.+|..+...-+..+.......++..+.
T Consensus 496 ~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~ 546 (644)
T 2z6h_A 496 AEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLF 546 (644)
T ss_dssp HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHS
T ss_pred HcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHH
Confidence 234677888888888999999999999888754332222111245555554
No 28
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.87 E-value=4e-19 Score=186.76 Aligned_cols=385 Identities=12% Similarity=0.099 Sum_probs=290.0
Q ss_pred HHHHHHHhCCCChHHHHHHHHhHHHHHHHhc----hhhhHhhhHHHHHHhhccCc-hhHHHHHHHHHHHHHhhcChh---
Q psy14014 169 RSHFRNLCQDDTPMVRRAAAGKLGELAKVVE----VDYLKTDIIPMFVNLAQDEQ-DSVRLLAVEACVSIASLLSQS--- 240 (615)
Q Consensus 169 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~----~~~~~~~ll~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~--- 240 (615)
++.+...+.++++.+|..++..+..++.... .......++|.+.+++++++ +.+|..|+.+|..++...+..
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 155 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV 155 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 4555667788899999999999998876433 12345678999999998876 899999999999998743321
Q ss_pred hHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC---ccchhhhHHHHHHHhh-cCCcHHHHHHHHHHHHHHHhhcc
Q psy14014 241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVG---PEITKTDLVQAFQMLL-KDSEAEVRAAAANKVRDFCQNLD 316 (615)
Q Consensus 241 ~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~ 316 (615)
......+|.+..++.++++.+|..++.+|+.++.... ........+|.+..++ .+.++.++..++.+|..++..-+
T Consensus 156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~ 235 (528)
T 4b8j_A 156 VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP 235 (528)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSS
T ss_pred HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 1223588999999999999999999999999985311 1111235788888988 67889999999999999987642
Q ss_pred ccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcch--h-hhhhhHHHHHHhhcCCChhHHHHHHHhhhHh
Q psy14014 317 AYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKH--N-TVDHLLPLFLSQLKDECPEVRLNIISNLDCV 393 (615)
Q Consensus 317 ~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~--~-~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l 393 (615)
... ......++|.+..++.+.++.++..++++|+.++...... . ....++|.+.+++.+.++.|+..|+.+|+.+
T Consensus 236 ~~~--~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl 313 (528)
T 4b8j_A 236 QPS--FEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI 313 (528)
T ss_dssp CCC--HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCc--HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence 221 2345778999999999999999999999999998543221 1 1235789999999999999999999999988
Q ss_pred hhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcC-CchHHHHHHHHhHHHHhhhCh---HhHHHHHH
Q psy14014 394 NEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDS-KWRVRLAIIEYMPLLAGQLGV---EFFDEKLN 469 (615)
Q Consensus 394 ~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~-~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~ 469 (615)
.... ....+.. ++ ..+. |.+..++.++ ++.+|..++.++..++..... ..+...++
T Consensus 314 ~~~~--~~~~~~~--~~---------------~~~l-~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i 373 (528)
T 4b8j_A 314 VTGD--DAQTQCI--ID---------------HQAL-PCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGII 373 (528)
T ss_dssp TTSC--HHHHHHH--HT---------------TTHH-HHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCH
T ss_pred HcCC--HHHHHHH--HH---------------hhhH-HHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCH
Confidence 6532 1111111 00 0011 6777888888 899999999999999863211 11234577
Q ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHh----hhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChh-----
Q psy14014 470 ALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWA----QSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPT----- 540 (615)
Q Consensus 470 ~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~----- 540 (615)
|.+..++.+.+..+|..|+.+++.++..-+++.. ...+++.|.+++.++++.++..++.+++.+....+..
T Consensus 374 ~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~ 453 (528)
T 4b8j_A 374 GPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAA 453 (528)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 8899999888999999999999999986434321 2458899999999999999999999999998654321
Q ss_pred ----hH-----HHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHh
Q psy14014 541 ----VT-----ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI 575 (615)
Q Consensus 541 ----~~-----~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~ 575 (615)
.+ ....++.+..+..+++++++..+..++..+...
T Consensus 454 ~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 454 GDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp CSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred ccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 11 123567788888999999999999999988754
No 29
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.86 E-value=7.4e-19 Score=185.10 Aligned_cols=404 Identities=13% Similarity=-0.001 Sum_probs=259.3
Q ss_pred HHHHHHHhhcCCCcchhhhHHhhhhhhccCCCh---hh-HHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhc---hhh
Q psy14014 130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA---GV-KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE---VDY 202 (615)
Q Consensus 130 ~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~---~~-~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~---~~~ 202 (615)
.+|.+..+..+++..++..++..+..++..-.+ .+ ....++.+..++.++++++|..++.++..++..-+ ...
T Consensus 102 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i 181 (529)
T 1jdh_A 102 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 181 (529)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 344444444444444444444444444322111 11 23466777888889999999999999988875211 122
Q ss_pred hHhhhHHHHHHhhccCch-hHHHHHHHHHHHHHhhcChh--hHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCcc
Q psy14014 203 LKTDIIPMFVNLAQDEQD-SVRLLAVEACVSIASLLSQS--DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPE 279 (615)
Q Consensus 203 ~~~~ll~~l~~~~~d~~~-~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~ 279 (615)
.....+|.+..++++.+. .++..+..++..++..-... ......+|.+..++.+++..++..++.++..++...+..
T Consensus 182 ~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 261 (529)
T 1jdh_A 182 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ 261 (529)
T ss_dssp HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC
T ss_pred HHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh
Confidence 334567778888776654 45556677777776432211 112357889999999999999999999999998765444
Q ss_pred chhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCC--CCHHHHHHHHHHHHhhchh
Q psy14014 280 ITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVAD--PNQHVKSALASVIMGLSPI 357 (615)
Q Consensus 280 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d--~~~~vR~~~~~~l~~l~~~ 357 (615)
.....++|.+.+++.++++++|..|+.+|..++..- ++.+........+|.+.+++.+ .++.+|..++.+++.++..
T Consensus 262 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~ 340 (529)
T 1jdh_A 262 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN-YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 340 (529)
T ss_dssp SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC-HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC
Confidence 344578999999999999999999999999987632 1222223334567777777754 4589999999999999754
Q ss_pred hcch-----h-hhhhhHHHHHHhhcCCC-hhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhh
Q psy14014 358 LGKH-----N-TVDHLLPLFLSQLKDEC-PEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNA 430 (615)
Q Consensus 358 ~g~~-----~-~~~~l~p~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~ 430 (615)
-+.. . .....+|.+.+++++++ +.++..++.++..+.... ... ... . ...+.
T Consensus 341 ~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~--~~~-~~~--~---------------~~~~i- 399 (529)
T 1jdh_A 341 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP--ANH-APL--R---------------EQGAI- 399 (529)
T ss_dssp STTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG--GGH-HHH--H---------------HTTHH-
T ss_pred CchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcCh--hhh-HHH--H---------------HcCCH-
Confidence 2221 1 12246899999999876 599999999988876422 111 111 0 01111
Q ss_pred HHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhCh--HHhhhchh
Q psy14014 431 LSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGS--EWAQSTVI 508 (615)
Q Consensus 431 ~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~ 508 (615)
|.+.+++++.++.+|..++.++....-..| .....++..++.++..++..-.. .......+
T Consensus 400 ~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~-----------------~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v 462 (529)
T 1jdh_A 400 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEG-----------------VRMEEIVEGCTGALHILARDVHNRIVIRGLNTI 462 (529)
T ss_dssp HHHHHHHHHHHHHHC-----------CBTT-----------------BCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhHHHHHHHhcccCchhhhcc-----------------ccHHHHHHHHHHHHHHHhcCchHHHHHhccCCc
Confidence 566777777788888888877665211111 11233455566666666532110 11224578
Q ss_pred HHHHhhhcCCCchHHHHHHHHHHHHHhhhC--hhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHH
Q psy14014 509 PKVVAMSRDQNYLHRMTCLFCINVLAEACG--PTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKI 572 (615)
Q Consensus 509 ~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~--~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l 572 (615)
|.+..++.++++.+|..++.++++++..-. ........++.|.+++.+++++||..+..+|.++
T Consensus 463 ~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 463 PLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999874211 1112346788999999999999999999999886
No 30
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.82 E-value=9.7e-18 Score=178.04 Aligned_cols=506 Identities=11% Similarity=0.038 Sum_probs=340.6
Q ss_pred hHHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcH-HHHHHHHHHhccccCCCCCcchhhhch
Q psy14014 14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAEQLGTFTPNVGGPEYVHCLL 92 (615)
Q Consensus 14 ~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~-~vr~~a~~~l~~l~~~~~~~~~~~~l~ 92 (615)
.++.+-..+++++...|..+++.+-.+- ..|.+ . ..+.+-+.+++.+++ +.|+..--.+..+++. .++...-.+
T Consensus 35 e~~~ir~~l~~~~~~~k~~~l~kli~~~-~~G~d-~-~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~--~~e~~~l~i 109 (618)
T 1w63_A 35 ECAAIRSSFREEDNTYRCRNVAKLLYMH-MLGYP-A-HFGQLECLKLIASQKFTDKRIGYLGAMLLLDE--RQDVHLLMT 109 (618)
T ss_dssp HHHHHHHHHTTTCTTTHHHHHHHHHHHH-HTTCC-C-GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCC--CHHHHHHHH
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHH-HcCCC-C-cchHHHHHHHHcCCchHHHHHHHHHHHHHhCC--CcHHHHHHH
Confidence 3556667888888778888877777663 34554 2 223333444555555 6888777677766652 233334456
Q ss_pred HHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHH
Q psy14014 93 PPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHF 172 (615)
Q Consensus 93 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l 172 (615)
+.|.+-+.++++.+|-.|+.+++.+.. ..+.+.++|.+.++..+.+..+|+.|+..+..++...++ ..+.+++.+
T Consensus 110 n~l~kDL~~~n~~vr~lAL~~L~~i~~----~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~-~v~~~~~~l 184 (618)
T 1w63_A 110 NCIKNDLNHSTQFVQGLALCTLGCMGS----SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE-LMEMFLPAT 184 (618)
T ss_dssp HHHHHHHSCSSSHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG-GGGGGGGGT
T ss_pred HHHHHhcCCCCHhHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH-HHHHHHHHH
Confidence 677777889999999999999998862 345567888888888899999999999999888765443 334677778
Q ss_pred HHHhCCCChHHHHHHHHhHHHHHHHhch-hhhHhhhHHHHHHhhcc---------------CchhHHHHHHHHHHHHHhh
Q psy14014 173 RNLCQDDTPMVRRAAAGKLGELAKVVEV-DYLKTDIIPMFVNLAQD---------------EQDSVRLLAVEACVSIASL 236 (615)
Q Consensus 173 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~ll~~l~~~~~d---------------~~~~vr~~a~~~l~~l~~~ 236 (615)
..++.|.++.|+..++.++..++..-+. ......++|.+...+++ .+++.+...++++..++..
T Consensus 185 ~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~ 264 (618)
T 1w63_A 185 KNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRN 264 (618)
T ss_dssp TTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT
T ss_pred HHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCC
Confidence 8889999999999999999998764322 11233556666655543 4788888888888887754
Q ss_pred cChhhHHHhHHHHHHHhc------CCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHH
Q psy14014 237 LSQSDVEQLVMPTLRQCS------GDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRD 310 (615)
Q Consensus 237 ~~~~~~~~~l~~~l~~~~------~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 310 (615)
-+. ....+.+.+.+++ ++.+..|...+++++..+.. .........+.+..++.++++++|..|+.++..
T Consensus 265 ~~~--~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~---~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~ 339 (618)
T 1w63_A 265 DDD--SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS---ESGLRVLAINILGRFLLNNDKNIRYVALTSLLK 339 (618)
T ss_dssp CHH--HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC---CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHH
T ss_pred CHH--HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 322 2334455555543 23445788888887776421 111122466778888999999999999999999
Q ss_pred HHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhh
Q psy14014 311 FCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNL 390 (615)
Q Consensus 311 ~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l 390 (615)
++..-+ .......+.+..++.|++..+|..+++.+..++..-. .+.+++.+.+.+.+.+.++|..++.++
T Consensus 340 i~~~~p------~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n----v~~iv~eL~~~l~~~d~e~r~~~v~~I 409 (618)
T 1w63_A 340 TVQTDH------NAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN----IRGMMKELLYFLDSCEPEFKADCASGI 409 (618)
T ss_dssp HHHHHH------HHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS----THHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHhhCH------HHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccccc----HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 987532 2334455677778899999999999999988875322 345677778888888899999999999
Q ss_pred hHhhhhhc-hhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHH
Q psy14014 391 DCVNEVIG-IQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLN 469 (615)
Q Consensus 391 ~~l~~~~~-~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 469 (615)
+.+...+. ...|- + +.+.+++++....++..++..+..+...... .....+
T Consensus 410 ~~la~k~~~~~~~~--------v------------------~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~--l~~~~v 461 (618)
T 1w63_A 410 FLAAEKYAPSKRWH--------I------------------DTIMRVLTTAGSYVRDDAVPNLIQLITNSVE--MHAYTV 461 (618)
T ss_dssp HHHHHSSCCCHHHH--------H------------------HHHHHHHHHTGGGSCSSHHHHHHHHHHHSCS--THHHHH
T ss_pred HHHHHHhCccHHHH--------H------------------HHHHHHHHhccchhHHHHHHHHHHHHhcChh--HHHHHH
Confidence 99887653 22232 2 3344444444434444455555555543321 123344
Q ss_pred HHHHHhcCC--cchHHHHHHHHHHHHHHHHhChH---------HhhhchhHHHHhhhc--CCCchHHHHHHHHHHHHHhh
Q psy14014 470 ALCMTWLVD--HVYAIREAATLNLKKLVEQFGSE---------WAQSTVIPKVVAMSR--DQNYLHRMTCLFCINVLAEA 536 (615)
Q Consensus 470 ~~l~~~l~d--~~~~vR~~a~~~l~~l~~~~~~~---------~~~~~i~~~l~~~~~--d~~~~~R~~a~~~l~~l~~~ 536 (615)
+.+...+.+ ....+...+++++|..+..+... .....+++.+..+++ ..++.+|..++.++..+...
T Consensus 462 ~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~ 541 (618)
T 1w63_A 462 QRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTR 541 (618)
T ss_dssp HHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 444444442 23345557899999998765320 011224455555544 56889999999999999876
Q ss_pred hChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhH
Q psy14014 537 CGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGP 574 (615)
Q Consensus 537 ~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~ 574 (615)
.+.. .+.+...|..+..|.+.+||..|...+.-+..
T Consensus 542 ~~~~--~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 542 FTCT--VNRIKKVVSIYGSSIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp CSSC--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred Ccch--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 6432 45566677777899999999999988777643
No 31
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.80 E-value=3.1e-16 Score=165.76 Aligned_cols=475 Identities=11% Similarity=0.050 Sum_probs=303.6
Q ss_pred hHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHH
Q psy14014 92 LPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSH 171 (615)
Q Consensus 92 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~ 171 (615)
.+....++.+++...|..+--++..+++.-+ +..-.+++.+..=..+++..+|..|...++.+. .+++.+.+.+.
T Consensus 76 ~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~--e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~---~~e~~~~l~~~ 150 (621)
T 2vgl_A 76 HMEAVNLLSSNRYTEKQIGYLFISVLVNSNS--ELIRLINNAIKNDLASRNPTFMGLALHCIANVG---SREMAEAFAGE 150 (621)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHSCCCCH--HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC---CHHHHHHHTTH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHccCCc--HHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccC---CHHHHHHHHHH
Confidence 3333445566667777777666666554332 222233444444445566667777777776663 35566777788
Q ss_pred HHHHh--CCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh--hHHHhHH
Q psy14014 172 FRNLC--QDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS--DVEQLVM 247 (615)
Q Consensus 172 l~~l~--~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~ 247 (615)
+.+++ .|.++.||+.|+.++..+.+..+.....+.+++.+.+++.|.++.|+.+|+..+..++..-+.. ...+.++
T Consensus 151 v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~ 230 (621)
T 2vgl_A 151 IPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAV 230 (621)
T ss_dssp HHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 88888 9999999999999999999865432212378899999999999999999999999988764431 1234455
Q ss_pred HHHHHhcCCC-------------ChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhh---cC---------CcH--HH
Q psy14014 248 PTLRQCSGDT-------------SWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLL---KD---------SEA--EV 300 (615)
Q Consensus 248 ~~l~~~~~d~-------------~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l---~d---------~~~--~v 300 (615)
..+.+++.+. ++..+..+++.++.++..- +......+.+.+...+ .+ .+. .|
T Consensus 231 ~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~-d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aV 309 (621)
T 2vgl_A 231 SRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPE-DPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAV 309 (621)
T ss_dssp HHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCS-SHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHhhccCcccccccccchHHHH
Confidence 5555554221 4567777776666554210 0011122333332222 22 122 56
Q ss_pred HHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhc-CCC
Q psy14014 301 RAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLK-DEC 379 (615)
Q Consensus 301 r~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~-d~~ 379 (615)
.-.+++++-.+. +. ..+.....+.+..++.++++.+|..++.++..++...+.........+.+..++. |++
T Consensus 310 l~ea~~~i~~l~----~~---~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d 382 (621)
T 2vgl_A 310 LFEAISLIIHHD----SE---PNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERD 382 (621)
T ss_dssp HHHHHHHHHHHC----CC---HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhcC----Cc---HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCC
Confidence 666666665543 11 1345567778888888999999999999999998765433344556778888888 999
Q ss_pred hhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhh
Q psy14014 380 PEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQL 459 (615)
Q Consensus 380 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~ 459 (615)
..||..+++.+..++.. ..+..- + ..+.+.+.+.+..+|..++..++.++..+
T Consensus 383 ~~Ir~~aL~lL~~l~~~---~Nv~~I------v------------------~eL~~yl~~~d~~~~~~~v~~I~~la~k~ 435 (621)
T 2vgl_A 383 VSVRQRAVDLLYAMCDR---SNAQQI------V------------------AEMLSYLETADYSIREEIVLKVAILAEKY 435 (621)
T ss_dssp HHHHHHHHHHHHHHCCH---HHHHHH------H------------------HHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHcCh---hhHHHH------H------------------HHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 99999999887766432 212111 1 34455556677789999999999999877
Q ss_pred ChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcCCCch--HHHHHHHHHHHHHhhh
Q psy14014 460 GVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYL--HRMTCLFCINVLAEAC 537 (615)
Q Consensus 460 ~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~--~R~~a~~~l~~l~~~~ 537 (615)
.+.. +..+..+++++.+....+...+...+..++..... .....+..+.+.+.++... .-..+++.+|+.+...
T Consensus 436 ~~~~--~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~--~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~ 511 (621)
T 2vgl_A 436 AVDY--TWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDD--VQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLI 511 (621)
T ss_dssp CSST--HHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCS--CHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHH
T ss_pred CCcH--HHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChh--HHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHh
Confidence 6431 23444555555544333555555666666544321 2344666777777777543 3345669999987654
Q ss_pred Chhh-H-HHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHHHHHhhhcC--CCCccHHHHHHHHHHHHh
Q psy14014 538 GPTV-T-ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNG--DTDVDVKYFAQEAISSIA 612 (615)
Q Consensus 538 ~~~~-~-~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~--d~d~~v~~~a~~a~~~~~ 612 (615)
.... . ...++..+.+...+..+.||..+..++..+....+ ...+.+..++..... |.|.|||+.|.+-...+.
T Consensus 512 ~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p--~~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~ 588 (621)
T 2vgl_A 512 AGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFP--EVKATIQDVLRSDSQLKNADVELQQRAVEYLRLST 588 (621)
T ss_dssp HSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHCh--HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHc
Confidence 3211 0 01234455555568889999999999999876543 334566777766666 999999999999887764
No 32
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.80 E-value=7.8e-17 Score=167.53 Aligned_cols=383 Identities=12% Similarity=0.130 Sum_probs=272.6
Q ss_pred HHHHHHhhccCchhHHHHHHHHHHHHHhhcCh----hhHHHhHHHHHHHhcCC-CChHHHHHHHHHHHHHHHHhCcc---
Q psy14014 208 IPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ----SDVEQLVMPTLRQCSGD-TSWRVRYMVADKFTDLQKAVGPE--- 279 (615)
Q Consensus 208 l~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d-~~~~vR~~~~~~l~~l~~~~~~~--- 279 (615)
++-+.+.++.++.+.+..|+..+..+...-.. ..+...++|.|.++++. .++.++..++.+|++++..-...
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 55566677778888888888877776543222 22334578888888864 45788999999999987532111
Q ss_pred chhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCC-----HHHHHHHHHHHHhh
Q psy14014 280 ITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPN-----QHVKSALASVIMGL 354 (615)
Q Consensus 280 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~-----~~vR~~~~~~l~~l 354 (615)
......+|.|..++++++++||+.|+.+|+.++..-+ ..+........++.+..++.+++ ..+++.+++++..+
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~-~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGS-AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 1223578999999999999999999999999886422 22222334457788888887654 34677788888888
Q ss_pred chhhcc---hhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhH
Q psy14014 355 SPILGK---HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNAL 431 (615)
Q Consensus 355 ~~~~g~---~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~ 431 (615)
+..-.. -.....++|.+.+++.+.+++++..++.+|..+...... ..+.. .+ ..+. |
T Consensus 218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~--~~~~i--~~---------------~g~i-~ 277 (510)
T 3ul1_B 218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE--RIEMV--VK---------------KGVV-P 277 (510)
T ss_dssp HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH--HHHHH--HT---------------TTCH-H
T ss_pred hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhh--hHHHH--Hh---------------cccc-h
Confidence 754222 122456899999999999999999999999887643211 11110 00 0011 6
Q ss_pred HHHHhhhcCCchHHHHHHHHhHHHHhhhCh---HhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhCh---HHhhh
Q psy14014 432 SIVELAEDSKWRVRLAIIEYMPLLAGQLGV---EFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGS---EWAQS 505 (615)
Q Consensus 432 ~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~ 505 (615)
.+.+++.+++..++..++.+++.++..-.. .......++.+..++.+++..+|..|+.+++.++..... .....
T Consensus 278 ~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~ 357 (510)
T 3ul1_B 278 QLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH 357 (510)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred hhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhc
Confidence 778889999999999999999988642211 112234566777888999999999999999999753211 11224
Q ss_pred chhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhh----HHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhh---
Q psy14014 506 TVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTV----TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET--- 578 (615)
Q Consensus 506 ~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~--- 578 (615)
.++|.+..++.+.++.+|..|++++++++.....+. ....+++.|..++..+++.++..+..+|..+....+.
T Consensus 358 g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~ 437 (510)
T 3ul1_B 358 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGE 437 (510)
T ss_dssp THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccc
Confidence 588999999999999999999999999987655443 2356889999999999999999999999999865421
Q ss_pred -hhH-----HhhHHHHHhhhcCCCCccHHHHHHHHHHHH
Q psy14014 579 -NVI-----QSQVKPALDKLNGDTDVDVKYFAQEAISSI 611 (615)
Q Consensus 579 -~~~-----~~~~~~~l~~l~~d~d~~v~~~a~~a~~~~ 611 (615)
+.+ .......++.|..+++.+|++.|...++.+
T Consensus 438 ~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 438 TEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp HHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 111 122456678888999999999999988764
No 33
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.79 E-value=2.2e-16 Score=165.20 Aligned_cols=384 Identities=12% Similarity=0.121 Sum_probs=269.7
Q ss_pred hHHHHHHhhccCchhHHHHHHHHHHHHHhhcCh----hhHHHhHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhCcc--
Q psy14014 207 IIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ----SDVEQLVMPTLRQCSG-DTSWRVRYMVADKFTDLQKAVGPE-- 279 (615)
Q Consensus 207 ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~l~~~~~~~-- 279 (615)
.++.+.+.++.++.+.+..|+..+..+...-.. ..+...++|.|.+++. +.++.++..++.+|+.++..-...
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 345555666666777777777766665432221 1223457788888775 455778888888888887532111
Q ss_pred -chhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCC-----HHHHHHHHHHHHh
Q psy14014 280 -ITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPN-----QHVKSALASVIMG 353 (615)
Q Consensus 280 -~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~-----~~vR~~~~~~l~~ 353 (615)
......+|.|..++.++++++|..|+.+|+.++..- ++.+........+|.+..++.+++ ..+.+.+++++..
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~-~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 235 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAG-SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 235 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccC-HHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence 123357899999999999999999999999987632 222222334457788888887654 3456778888888
Q ss_pred hchhhcc---hhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhh
Q psy14014 354 LSPILGK---HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNA 430 (615)
Q Consensus 354 l~~~~g~---~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~ 430 (615)
++..-.. ......++|.+.+++.+.+++++..++.+|..+...... ..+.. . . ..+.
T Consensus 236 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~--~~~~v-----~----~--------~g~i- 295 (529)
T 3tpo_A 236 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE--RIEMV-----V----K--------KGVV- 295 (529)
T ss_dssp HHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHH--HHHHH-----H----T--------TTCH-
T ss_pred HHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhh--hHHHH-----H----h--------ccch-
Confidence 7653221 123456899999999999999999999999877643221 11110 0 0 0011
Q ss_pred HHHHHhhhcCCchHHHHHHHHhHHHHhhhCh---HhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhCh---HHhh
Q psy14014 431 LSIVELAEDSKWRVRLAIIEYMPLLAGQLGV---EFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGS---EWAQ 504 (615)
Q Consensus 431 ~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~ 504 (615)
|.+..++.++++.++..++.+++.++..-.. .......++.+..++.+++..+|..|+.+++.++..... ....
T Consensus 296 ~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~ 375 (529)
T 3tpo_A 296 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVN 375 (529)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHh
Confidence 6778889999999999999999988642211 112334677888999999999999999999999753211 1122
Q ss_pred hchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhh----HHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhh--
Q psy14014 505 STVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTV----TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET-- 578 (615)
Q Consensus 505 ~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~-- 578 (615)
..++|.+..++.++++.+|..|+++|++++....++. ....++|.|..++..+++.++..+..+|..+....+.
T Consensus 376 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~ 455 (529)
T 3tpo_A 376 HGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG 455 (529)
T ss_dssp TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc
Confidence 3588999999999999999999999999987655442 2346889999999999999999999999999865421
Q ss_pred --hhHHh-----hHHHHHhhhcCCCCccHHHHHHHHHHHH
Q psy14014 579 --NVIQS-----QVKPALDKLNGDTDVDVKYFAQEAISSI 611 (615)
Q Consensus 579 --~~~~~-----~~~~~l~~l~~d~d~~v~~~a~~a~~~~ 611 (615)
+.+.. .....++.|..+++.+|++.|...++.+
T Consensus 456 ~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 456 ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp CHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 11111 2345677788899999999999988764
No 34
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.78 E-value=5.7e-16 Score=161.04 Aligned_cols=383 Identities=11% Similarity=0.066 Sum_probs=278.2
Q ss_pred HHHHHhCCCChHHHHHHHHhHHHHHHHhch----hhhHhhhHHHHHHhhc-cCchhHHHHHHHHHHHHHhhcChh---hH
Q psy14014 171 HFRNLCQDDTPMVRRAAAGKLGELAKVVEV----DYLKTDIIPMFVNLAQ-DEQDSVRLLAVEACVSIASLLSQS---DV 242 (615)
Q Consensus 171 ~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~ll~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~---~~ 242 (615)
.+.+.+.+.+++++..++..+..+...-.. ......++|.+.++++ ++++.++..|..+|..++...+.. ..
T Consensus 61 ~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv 140 (510)
T 3ul1_B 61 DIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVV 140 (510)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 345666888999999999988887643221 3345578999999987 456789999999999998654432 12
Q ss_pred HHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC---ccchhhhHHHHHHHhhcCCc-----HHHHHHHHHHHHHHHhh
Q psy14014 243 EQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVG---PEITKTDLVQAFQMLLKDSE-----AEVRAAAANKVRDFCQN 314 (615)
Q Consensus 243 ~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~-----~~vr~~a~~~l~~~~~~ 314 (615)
....+|.+.+++.+++..+|..++.+|++++.... ........++.+..++.+.+ ..+...+..++..++..
T Consensus 141 ~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~ 220 (510)
T 3ul1_B 141 DGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 220 (510)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCC
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhc
Confidence 23478999999999999999999999999974211 11122356788888887654 34566788888887764
Q ss_pred ccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc--hh-hhhhhHHHHHHhhcCCChhHHHHHHHhhh
Q psy14014 315 LDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK--HN-TVDHLLPLFLSQLKDECPEVRLNIISNLD 391 (615)
Q Consensus 315 ~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~--~~-~~~~l~p~l~~~l~d~~~~vr~~a~~~l~ 391 (615)
-.+.. .......++|.|.+++.+.++.++..+++++..++..-.. .. ....++|.+.+++.+.+..++..++.+++
T Consensus 221 ~~~~~-~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~ 299 (510)
T 3ul1_B 221 KNPAP-PLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG 299 (510)
T ss_dssp CSSCC-CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred ccchh-HHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHH
Confidence 32221 1123567899999999999999999999999999864221 11 12357899999999999999999999998
Q ss_pred HhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhCh---HhHHHHH
Q psy14014 392 CVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGV---EFFDEKL 468 (615)
Q Consensus 392 ~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l 468 (615)
.+.... +.......-...+ +.+..++++++..+|..++.++..++..-.. ......+
T Consensus 300 nl~~~~--~~~~~~i~~~g~l------------------~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~ 359 (510)
T 3ul1_B 300 NIVTGT--DEQTQKVIDAGAL------------------AVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 359 (510)
T ss_dssp HHTTSC--HHHHHHHHHTTGG------------------GGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred HhhcCC--HHHHHHHhhccch------------------HHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCC
Confidence 875432 2222211000111 4556677888899999999999998653211 1233468
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHH----hhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhh---Ch-h
Q psy14014 469 NALCMTWLVDHVYAIREAATLNLKKLVEQFGSEW----AQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEAC---GP-T 540 (615)
Q Consensus 469 ~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~---~~-~ 540 (615)
+|.+..++.+.+..+|..|+.+++.++.....+. ....+++.|.+++.++++.++..++.+|.++.+.. +. .
T Consensus 360 i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~ 439 (510)
T 3ul1_B 360 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETE 439 (510)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchH
Confidence 8999999999999999999999999987644432 22458899999999999999999999999987643 21 1
Q ss_pred hH-----HHhhHHHHHhhCCCCCchHHHHHHHHHHHHhH
Q psy14014 541 VT-----ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGP 574 (615)
Q Consensus 541 ~~-----~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~ 574 (615)
.+ ....+..+..+..+++.+|+..|...+.+.+.
T Consensus 440 ~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 440 KLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 11 12456788888899999999999999888764
No 35
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.77 E-value=1.4e-15 Score=159.18 Aligned_cols=384 Identities=11% Similarity=0.069 Sum_probs=277.4
Q ss_pred HHHHHHhCCCChHHHHHHHHhHHHHHHHhch----hhhHhhhHHHHHHhhc-cCchhHHHHHHHHHHHHHhhcChh---h
Q psy14014 170 SHFRNLCQDDTPMVRRAAAGKLGELAKVVEV----DYLKTDIIPMFVNLAQ-DEQDSVRLLAVEACVSIASLLSQS---D 241 (615)
Q Consensus 170 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~ll~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~---~ 241 (615)
+.+.+.+...++..+..++..+..+...-.. ......++|.+.++++ ++++.++..|..+|..++...+.. .
T Consensus 79 ~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~v 158 (529)
T 3tpo_A 79 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV 158 (529)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3345566777888888888887776532211 2345678999999886 556889999999999998765432 1
Q ss_pred HHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh---CccchhhhHHHHHHHhhcCCc-----HHHHHHHHHHHHHHHh
Q psy14014 242 VEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAV---GPEITKTDLVQAFQMLLKDSE-----AEVRAAAANKVRDFCQ 313 (615)
Q Consensus 242 ~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~-----~~vr~~a~~~l~~~~~ 313 (615)
.....+|.+..++.+++..+|..++.+|+.++..- .........++.+..++.+.+ ..+...++.++..++.
T Consensus 159 v~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~ 238 (529)
T 3tpo_A 159 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 238 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHh
Confidence 23347899999999999999999999999997421 111122356788888887654 3456678888888776
Q ss_pred hccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc--h-hhhhhhHHHHHHhhcCCChhHHHHHHHhh
Q psy14014 314 NLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK--H-NTVDHLLPLFLSQLKDECPEVRLNIISNL 390 (615)
Q Consensus 314 ~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~--~-~~~~~l~p~l~~~l~d~~~~vr~~a~~~l 390 (615)
.-.+.. .......++|.|..++.+.++.++..++++|..++..... . .....++|.+.+++.+.++.++..++.++
T Consensus 239 ~~~~~~-~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL 317 (529)
T 3tpo_A 239 NKNPAP-PLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 317 (529)
T ss_dssp CCTTCC-CHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred cccchh-hHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHH
Confidence 432221 1134567899999999999999999999999998764221 1 11235789999999999999999999999
Q ss_pred hHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhCh---HhHHHH
Q psy14014 391 DCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGV---EFFDEK 467 (615)
Q Consensus 391 ~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~ 467 (615)
+.+... .+.......-...+ +.+..++++++..+|..++.++..++..-.. ......
T Consensus 318 ~nl~~~--~~~~~~~i~~~g~l------------------~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g 377 (529)
T 3tpo_A 318 GNIVTG--TDEQTQKVIDAGAL------------------AVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG 377 (529)
T ss_dssp HHHTTS--CHHHHHHHHHTTGG------------------GGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHcc--chHHHHHHhhcccH------------------HHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcC
Confidence 887542 22222211000111 5777888899999999999999999753211 123345
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHH----hhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhh---Ch-
Q psy14014 468 LNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEW----AQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEAC---GP- 539 (615)
Q Consensus 468 l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~---~~- 539 (615)
++|.+..++.+.+..+|..|+.+++.++.....+. ....+++.|.+++.++++.++..++.+|.++.... +.
T Consensus 378 ~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~ 457 (529)
T 3tpo_A 378 LVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGET 457 (529)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccCh
Confidence 88999999999999999999999999987644432 12348999999999999999999999999987542 21
Q ss_pred hhH-----HHhhHHHHHhhCCCCCchHHHHHHHHHHHHhH
Q psy14014 540 TVT-----ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGP 574 (615)
Q Consensus 540 ~~~-----~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~ 574 (615)
..+ ....+..+..+..+++.+|+..|...+...+.
T Consensus 458 ~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 458 EKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 497 (529)
T ss_dssp HHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 111 12356778888899999999999999888754
No 36
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.77 E-value=1.4e-14 Score=162.88 Aligned_cols=557 Identities=11% Similarity=0.079 Sum_probs=327.1
Q ss_pred HHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcHH-HHHHHHHHhccccCCCC----Ccch----
Q psy14014 17 VLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVG----GPEY---- 87 (615)
Q Consensus 17 ~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~-vr~~a~~~l~~l~~~~~----~~~~---- 87 (615)
.++..+.+++..+|..+...++.++..-.++ .|++++|.+.+.+++++. .+..+..++..+.+... .++.
T Consensus 89 ~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~-~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l 167 (960)
T 1wa5_C 89 EIVPLMISLPNNLQVQIGEAISSIADSDFPD-RWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEI 167 (960)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHSTT-TCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhhCcc-chhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHH
Confidence 4556667777889999999999999886665 799999999998887664 67777777777665321 1111
Q ss_pred ---h----hhchHHHhhh---hcCchh---HHH------HHHHHHHHHHHhhcChhHHhh---hHHHHHHHhhcC-----
Q psy14014 88 ---V----HCLLPPLESL---ATVEET---VVR------DKAVESLRLISAQHSPHDLEA---HFVPLVQRLASG----- 140 (615)
Q Consensus 88 ---~----~~l~~~l~~l---~~~~~~---~vr------~~a~~~l~~l~~~~~~~~~~~---~~l~~l~~l~~~----- 140 (615)
. +.++.++..+ +.++.. .+| ..++.++..+...--++.... ..++.+..+...
T Consensus 168 ~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~ 247 (960)
T 1wa5_C 168 KLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLL 247 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 1 1122333222 333221 233 234444444332222222222 234444443321
Q ss_pred -----CC-----cchhhhHHhhhhhhccCCChhh---HHHHHHHHHHHhC-----CCChHHHHHHHHhHHHHHHHhc-h-
Q psy14014 141 -----DW-----FTSRTSACGLFSVCYPRVTAGV---KAELRSHFRNLCQ-----DDTPMVRRAAAGKLGELAKVVE-V- 200 (615)
Q Consensus 141 -----~~-----~~~r~~a~~~l~~~~~~~~~~~---~~~l~~~l~~l~~-----d~~~~vR~~a~~~l~~l~~~~~-~- 200 (615)
+. ..+|+.++..+..+.....+.. ...+++.+...+. ..+..++..+++.+..+++.-. .
T Consensus 248 ~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~ 327 (960)
T 1wa5_C 248 EDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFE 327 (960)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHG
T ss_pred cCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHH
Confidence 01 2356666777766655444333 3345555555443 4567889999998888764311 0
Q ss_pred ----hhhHhhhH-HHHHHhhc-----------------------cCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHH
Q psy14014 201 ----DYLKTDII-PMFVNLAQ-----------------------DEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQ 252 (615)
Q Consensus 201 ----~~~~~~ll-~~l~~~~~-----------------------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~ 252 (615)
..+...++ +.+...+. ++.+.+|.+|..++..++...+ +...+.+++.+.+
T Consensus 328 ~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~ 406 (960)
T 1wa5_C 328 IFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKG 406 (960)
T ss_dssp GGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHH
T ss_pred HHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHH
Confidence 12223333 23322221 1123689999999999999988 5556667777766
Q ss_pred hcC------CCChHHHHHHHHHHHHHHHHhC-cc-chhh-----hHHH----HHHHhhcCC---cHHHHHHHHHHHHHHH
Q psy14014 253 CSG------DTSWRVRYMVADKFTDLQKAVG-PE-ITKT-----DLVQ----AFQMLLKDS---EAEVRAAAANKVRDFC 312 (615)
Q Consensus 253 ~~~------d~~~~vR~~~~~~l~~l~~~~~-~~-~~~~-----~l~~----~l~~~l~d~---~~~vr~~a~~~l~~~~ 312 (615)
.+. +++|+.|.+++.+++.++.... .+ .... .+.+ .+...+.|+ ++-||..|+..++.+.
T Consensus 407 ~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~ 486 (960)
T 1wa5_C 407 FVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFR 486 (960)
T ss_dssp HHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTG
T ss_pred HHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHH
Confidence 554 6789999999999999986421 11 0000 3333 334445677 8999999999999999
Q ss_pred hhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhc----------ch---hhhhhhHHHHHHhhcCCC
Q psy14014 313 QNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILG----------KH---NTVDHLLPLFLSQLKDEC 379 (615)
Q Consensus 313 ~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g----------~~---~~~~~l~p~l~~~l~d~~ 379 (615)
..+++ .+...++|.+.+.+.|++..||..++.++..+++... .+ .+.+.+++.+..+++...
T Consensus 487 ~~~~~-----~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~ 561 (960)
T 1wa5_C 487 NQLTK-----AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHG 561 (960)
T ss_dssp GGSCH-----HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTC
T ss_pred hhCCH-----HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhcc
Confidence 88743 3577889999999999999999999999999887422 22 234455555666665431
Q ss_pred -----hhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhc-CCchHHHHHHHHhH
Q psy14014 380 -----PEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAED-SKWRVRLAIIEYMP 453 (615)
Q Consensus 380 -----~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~-~~~~vr~~~~~~l~ 453 (615)
......+.++++.++...+.. .. .|.+.+.. .+. ..+....++ .+...+...+++++
T Consensus 562 ~~~~~~~~~e~l~~al~~vv~~~~~~-~~------p~~~~l~~---------~L~-~~l~~~~~~~~~~~~~~~~~e~l~ 624 (960)
T 1wa5_C 562 SSPEKLAENEFLMRSIFRVLQTSEDS-IQ------PLFPQLLA---------QFI-EIVTIMAKNPSNPRFTHYTFESIG 624 (960)
T ss_dssp CCHHHHTSCHHHHHHHHHHHHHHTTT-TG------GGHHHHHH---------HHH-HHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred CCCCcccccHHHHHHHHHHHHHHHHh-hh------hHHHHHHH---------HHH-HHHHHHHhCCCCcHHHHHHHHHHH
Confidence 113356666666666555431 10 11111110 000 122222233 35567778899999
Q ss_pred HHHhhhChHh---HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhCh-HHhhhchhHHHH--hhhcCCCchHHHHHH
Q psy14014 454 LLAGQLGVEF---FDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGS-EWAQSTVIPKVV--AMSRDQNYLHRMTCL 527 (615)
Q Consensus 454 ~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~i~~~l~--~~~~d~~~~~R~~a~ 527 (615)
.++...+++. +.+.++|.+...+..........+...++.+...... ......++|.+. .....+. .-...+
T Consensus 625 ~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~ 702 (960)
T 1wa5_C 625 AILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKG--NIPAVT 702 (960)
T ss_dssp HHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTT--THHHHH
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhccCCCHHHHHHHHHHcCHHHhcCCC--CchhHH
Confidence 9988766543 4577888888887766667888899988888876411 112234667776 5554432 122445
Q ss_pred HHHHHHHhhhChhhH-HHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHHHHHhh----hcCCCCccHH
Q psy14014 528 FCINVLAEACGPTVT-ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDK----LNGDTDVDVK 601 (615)
Q Consensus 528 ~~l~~l~~~~~~~~~-~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~----l~~d~d~~v~ 601 (615)
.++..+....+.... .+.++..+.+++.++.. ...++..++.+...++...+.+.+.+++.. +..++....+
T Consensus 703 ~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~~~~ 779 (960)
T 1wa5_C 703 RLLKSFIKTDSSIFPDLVPVLGIFQRLIASKAY--EVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYV 779 (960)
T ss_dssp HHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTTT--HHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHhCCCcc--cchHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHhHH
Confidence 556665544332221 13455556666666553 378899999988877755344555554444 3344444444
No 37
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.75 E-value=3.8e-14 Score=159.27 Aligned_cols=560 Identities=10% Similarity=0.055 Sum_probs=331.5
Q ss_pred ccHHHHHHHHhcHHHHHHHh----------Ccc---hhhccchhhhhhhcCCcHHHHHHHHHHhccccCCCCCcchhhhc
Q psy14014 25 EDVQLRLNSIKKLSTIALAL----------GQE---RTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCL 91 (615)
Q Consensus 25 ~d~~~R~~a~~~l~~~~~~~----------~~~---~~~~~ll~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 91 (615)
.+..+|..|...|....... +++ .++..+++.+. ..+..+|..++.++..++..-. ++.|+.+
T Consensus 49 ~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~---~~~~~ir~~l~~~ia~ia~~d~-p~~Wp~l 124 (960)
T 1wa5_C 49 LPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMI---SLPNNLQVQIGEAISSIADSDF-PDRWPTL 124 (960)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHH---HSCHHHHHHHHHHHHHHHHHHS-TTTCTTH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHhhC-ccchhHH
Confidence 46778999998888876542 111 12333333332 2334599999999999886422 3578999
Q ss_pred hHHHhhhhcCchhHHHHHHHHHHHHHHhhcCh----hH--------Hhhh---HHHHHHHh---hcCCCc---chh----
Q psy14014 92 LPPLESLATVEETVVRDKAVESLRLISAQHSP----HD--------LEAH---FVPLVQRL---ASGDWF---TSR---- 146 (615)
Q Consensus 92 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~----~~--------~~~~---~l~~l~~l---~~~~~~---~~r---- 146 (615)
+|.|.+.+++++...+..++.++..+++.... +. +... ++.++..+ ..+... ..|
T Consensus 125 l~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~ 204 (960)
T 1wa5_C 125 LSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFD 204 (960)
T ss_dssp HHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99999998888888999999999999986531 11 1111 12222222 333211 123
Q ss_pred --hhHHhhhhhhc-cCCChhh---HHHHHHHHHHHhCC-----------CC----hHHHHHHHHhHHHHHHHhchh--hh
Q psy14014 147 --TSACGLFSVCY-PRVTAGV---KAELRSHFRNLCQD-----------DT----PMVRRAAAGKLGELAKVVEVD--YL 203 (615)
Q Consensus 147 --~~a~~~l~~~~-~~~~~~~---~~~l~~~l~~l~~d-----------~~----~~vR~~a~~~l~~l~~~~~~~--~~ 203 (615)
..+++++..+. ...++.. ...+++.+.+++.. .+ +.+|+.+++++..+++..+.. .+
T Consensus 205 ~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~ 284 (960)
T 1wa5_C 205 VLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPM 284 (960)
T ss_dssp HHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12333333321 2334322 24455666655421 11 468999999999888766542 23
Q ss_pred HhhhHHHHHHhhc-----cCchhHHHHHHHHHHHHHhhcC------hhhHHHhHH-HHHHHhc-----------------
Q psy14014 204 KTDIIPMFVNLAQ-----DEQDSVRLLAVEACVSIASLLS------QSDVEQLVM-PTLRQCS----------------- 254 (615)
Q Consensus 204 ~~~ll~~l~~~~~-----d~~~~vr~~a~~~l~~l~~~~~------~~~~~~~l~-~~l~~~~----------------- 254 (615)
...+++.+.+.+. ..++.++..+++.|..+++.-. ...+.+.++ +.+...+
T Consensus 285 ~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~ 364 (960)
T 1wa5_C 285 INEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEY 364 (960)
T ss_dssp HHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHH
Confidence 4455666665554 3467889999999988865321 112222222 2222111
Q ss_pred ------CCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhc------CCcHHHHHHHHHHHHHHHhhcc-c----
Q psy14014 255 ------GDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLK------DSEAEVRAAAANKVRDFCQNLD-A---- 317 (615)
Q Consensus 255 ------~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------d~~~~vr~~a~~~l~~~~~~~~-~---- 317 (615)
.+..|..|.++...+..++..+++ ...+.+++.+.+.+. ++++..|.+|+.+++.++.... .
T Consensus 365 i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~-~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~ 443 (960)
T 1wa5_C 365 IRRDLEGSDTDTRRRACTDFLKELKEKNEV-LVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGV 443 (960)
T ss_dssp HHHHHHC----CHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBC
T ss_pred HHhccCcccccCcHHHHHHHHHHHHHHcch-hHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCc
Confidence 122356899999999999998773 334556666666665 6778999999999999976421 1
Q ss_pred c------chhHHHHHhhHHHHHHhhCCC---CHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHH
Q psy14014 318 Y------NQENIIMTYILPYVKDLVADP---NQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIIS 388 (615)
Q Consensus 318 ~------~~~~~~~~~l~p~l~~~~~d~---~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~ 388 (615)
. .....+.+.++|. ++|+ ++.||..++++++.+++.+.+ .....++|.+.+.+.|++..||..|+.
T Consensus 444 ~~~~~~~~l~~~l~~~v~p~----l~~~~~~~p~vr~~a~~~lg~~~~~~~~-~~l~~~l~~l~~~L~d~~~~V~~~A~~ 518 (960)
T 1wa5_C 444 SSTNNLLNVVDFFTKEIAPD----LTSNNIPHIILRVDAIKYIYTFRNQLTK-AQLIELMPILATFLQTDEYVVYTYAAI 518 (960)
T ss_dssp CCBCTTCCHHHHHHHHTHHH----HHCSSCSCHHHHHHHHHHHHHTGGGSCH-HHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred ccccccccHHHHHHHHhHHH----hcCCCCCCceehHHHHHHHHHHHhhCCH-HHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 1 1111222334443 4556 899999999999999988753 456778899999999988999999999
Q ss_pred hhhHhhhhhc-----hhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCC-----chHHHHHHHHhHHHHhh
Q psy14014 389 NLDCVNEVIG-----IQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSK-----WRVRLAIIEYMPLLAGQ 458 (615)
Q Consensus 389 ~l~~l~~~~~-----~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~-----~~vr~~~~~~l~~l~~~ 458 (615)
++..+.+... ....... .+ . +|+...+ +.+..+++... ......+.+++..++..
T Consensus 519 Al~~~~~~~~~~~~~~~~~~~~-~l---~---------p~l~~ll--~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~ 583 (960)
T 1wa5_C 519 TIEKILTIRESNTSPAFIFHKE-DI---S---------NSTEILL--KNLIALILKHGSSPEKLAENEFLMRSIFRVLQT 583 (960)
T ss_dssp HHHHHTTCBSCSSSCCBSSCGG-GT---T---------TTHHHHH--HHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccccccccHH-Hh---h---------hhHHHHH--HHHHHHHHhccCCCCcccccHHHHHHHHHHHHH
Confidence 9998876421 0000000 00 1 1111111 23444444321 11235677788887776
Q ss_pred hChHh--HHHHHHHHHHHhc----CC-cchHHHHHHHHHHHHHHHHhChHH---hhhchhHHHHhhhcCCCchHHHHHHH
Q psy14014 459 LGVEF--FDEKLNALCMTWL----VD-HVYAIREAATLNLKKLVEQFGSEW---AQSTVIPKVVAMSRDQNYLHRMTCLF 528 (615)
Q Consensus 459 ~~~~~--~~~~l~~~l~~~l----~d-~~~~vR~~a~~~l~~l~~~~~~~~---~~~~i~~~l~~~~~d~~~~~R~~a~~ 528 (615)
++.++ +.+.+++.+...+ .+ .+...+...+.+++.++...+++. +.+.++|.+...+..........+..
T Consensus 584 ~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~ 663 (960)
T 1wa5_C 584 SEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQ 663 (960)
T ss_dssp HTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHH
Confidence 66532 3455666555543 22 356778889999999998755432 33567888888776655556667777
Q ss_pred HHHHHHhhhC-hhhHHHhhHHHHH--hhCCCCCchHHHHHHHHHHHHhHhhhhhhH-HhhHHHHHhhhcCCCCccHHHHH
Q psy14014 529 CINVLAEACG-PTVTANFLLPTVL--NMAGDNVANVRFNVAKTLQKIGPILETNVI-QSQVKPALDKLNGDTDVDVKYFA 604 (615)
Q Consensus 529 ~l~~l~~~~~-~~~~~~~i~~~l~--~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~~l~~l~~d~d~~v~~~a 604 (615)
.++.+.+... .......++|.+. ...... . .-..++.+|..++...+.... .+.+..++.++..++.. ...|
T Consensus 664 i~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~-~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~a 739 (960)
T 1wa5_C 664 IIAFVVEQSATIPESIKPLAQPLLAPNVWELK-G-NIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKAY--EVHG 739 (960)
T ss_dssp HHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCT-T-THHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTTT--HHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHcCHHHhcCC-C-CchhHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCCcc--cchH
Confidence 7777776541 1112345677666 554433 2 334566667666554332211 13455556666555543 3777
Q ss_pred HHHHHHHhh
Q psy14014 605 QEAISSIAD 613 (615)
Q Consensus 605 ~~a~~~~~~ 613 (615)
...++.++.
T Consensus 740 ~~ll~~i~~ 748 (960)
T 1wa5_C 740 FDLLEHIML 748 (960)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777664
No 38
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.73 E-value=6e-16 Score=148.09 Aligned_cols=252 Identities=18% Similarity=0.142 Sum_probs=188.6
Q ss_pred hHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHH
Q psy14014 92 LPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSH 171 (615)
Q Consensus 92 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~ 171 (615)
++.|...+.|+++.+|..|+.+|..+.. +..+|.+..+..+++..+|..++..++.+... +.....+++.
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~--~~~~~~l~~~ 94 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC--KKCEDNVFNI 94 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC--TTTHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC--------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccc--cccchHHHHH
Confidence 4555666677778888888887776641 23456666666777777787777777665421 2223445566
Q ss_pred HH-HHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHH
Q psy14014 172 FR-NLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTL 250 (615)
Q Consensus 172 l~-~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l 250 (615)
+. .+.+|+++.||..++.+|+.+....+. .....+|.+...++|+++.||..|+.+++.+.. +..+|.+
T Consensus 95 L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~--~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~~~L 164 (280)
T 1oyz_A 95 LNNMALNDKSACVRATAIESTAQRCKKNPI--YSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIPLL 164 (280)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccCCc--ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHHHHH
Confidence 65 356899999999999999998754321 234678899999999999999999999987643 3477888
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHH
Q psy14014 251 RQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILP 330 (615)
Q Consensus 251 ~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p 330 (615)
..+++|+++.||..++.+++.+.. .....++.+..+++|+++.||..|+.+|+.+.. +..+|
T Consensus 165 ~~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~------------~~~~~ 226 (280)
T 1oyz_A 165 INLLKDPNGDVRNWAAFAININKY------DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD------------KRVLS 226 (280)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTC------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC------------GGGHH
T ss_pred HHHHcCCCHHHHHHHHHHHHhhcc------CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC------------HhhHH
Confidence 889999999999999999988631 125788999999999999999999999998752 34678
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcC-CChhHHHHHHHhhh
Q psy14014 331 YVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKD-ECPEVRLNIISNLD 391 (615)
Q Consensus 331 ~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d-~~~~vr~~a~~~l~ 391 (615)
.+...++|++ ||..++.+++.+.. +..+|.+.+++++ .+++++..++..+.
T Consensus 227 ~L~~~l~d~~--vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 227 VLCDELKKNT--VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HHHHHHTSSS--CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred HHHHHhcCcc--HHHHHHHHHHhcCc--------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 8888888755 89999999988753 2578889998875 45677777776654
No 39
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.72 E-value=5.4e-16 Score=148.37 Aligned_cols=253 Identities=15% Similarity=0.114 Sum_probs=189.5
Q ss_pred hHHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcHH-HHHHHHHHhccccCCCCCcchhhhch
Q psy14014 14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLL 92 (615)
Q Consensus 14 ~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~-vr~~a~~~l~~l~~~~~~~~~~~~l~ 92 (615)
.+..++..++++|+.+|..|+..|+.+. . +..++.+..+++|+++ +|..++.+|+.+.. .......++
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~----~----~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~---~~~~~~~l~ 92 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRG----G----QDAVRLAIEFCSDKNYIRRDIGAFILGQIKI---CKKCEDNVF 92 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHC----C----HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC---CTTTHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccC----C----chHHHHHHHHHcCCCHHHHHHHHHHHHHhcc---ccccchHHH
Confidence 4778888899999999999999998774 2 2456666777777764 89999999988763 123345566
Q ss_pred HHHh-hhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHH
Q psy14014 93 PPLE-SLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSH 171 (615)
Q Consensus 93 ~~l~-~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~ 171 (615)
+.+. .+..|+++.||..++.+|..+....+. ....+.+.
T Consensus 93 ~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----------------------------------------~~~~~~~~ 132 (280)
T 1oyz_A 93 NILNNMALNDKSACVRATAIESTAQRCKKNPI----------------------------------------YSPKIVEQ 132 (280)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----------------------------------------GHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----------------------------------------ccHHHHHH
Confidence 6665 356788889999999998887654321 01233455
Q ss_pred HHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHH
Q psy14014 172 FRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLR 251 (615)
Q Consensus 172 l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 251 (615)
+..++.|+++.||..++.+++.+.. ...+|.+..+++|+++.||..|+.+++.+... .+..+|.+.
T Consensus 133 L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~~~L~ 198 (280)
T 1oyz_A 133 SQITAFDKSTNVRRATAFAISVIND--------KATIPLLINLLKDPNGDVRNWAAFAININKYD------NSDIRDCFV 198 (280)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHTC-----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC------CHHHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC------cHHHHHHHH
Confidence 6777899999999999999987643 34788888899999999999999999876321 234778888
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHH
Q psy14014 252 QCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPY 331 (615)
Q Consensus 252 ~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~ 331 (615)
..++|+++.||..++.+|+.+. ....+|.+...++|++ ||..|+.+|+.+.. +..+|.
T Consensus 199 ~~l~d~~~~vR~~A~~aL~~~~--------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~------------~~~~~~ 256 (280)
T 1oyz_A 199 EMLQDKNEEVRIEAIIGLSYRK--------DKRVLSVLCDELKKNT--VYDDIIEAAGELGD------------KTLLPV 256 (280)
T ss_dssp HHTTCSCHHHHHHHHHHHHHTT--------CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC------------GGGHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHhC--------CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc------------hhhhHH
Confidence 8999999999999999998875 2467888888888865 89999999988754 346788
Q ss_pred HHHhhCC-CCHHHHHHHHHHHHh
Q psy14014 332 VKDLVAD-PNQHVKSALASVIMG 353 (615)
Q Consensus 332 l~~~~~d-~~~~vR~~~~~~l~~ 353 (615)
|.+++++ ++..++..+...+..
T Consensus 257 L~~~l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 257 LDTMLYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp HHHHHTTSSCCHHHHHHHHHHTC
T ss_pred HHHHHhcCCCcHHHHHHHHHhhc
Confidence 8887764 566777776666543
No 40
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.70 E-value=2.8e-14 Score=161.06 Aligned_cols=503 Identities=11% Similarity=0.028 Sum_probs=295.3
Q ss_pred chhhhhhhcCCcHHHHHHHHHHhccccCCCCCcchhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHH
Q psy14014 53 LIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVP 132 (615)
Q Consensus 53 ll~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~ 132 (615)
+...+..+.+.+++.|+.|-+.|..+-+ .++.|..+..++. .+.+..||..|+.+|.+.....-
T Consensus 9 l~~~l~~~~~~d~~~r~~A~~~L~~~~~---~p~~w~~~~~lL~---~~~~~~vr~~aa~~L~~~i~~~w---------- 72 (971)
T 2x1g_F 9 LEEAVVSFYRSNSQNQAITHEWLTDAEA---SPQAWQFSWQLMQ---LGKSQEVQFFGAITLHSKLMKHW---------- 72 (971)
T ss_dssp --CTHHHHHTSTTTC----CHHHHHTTT---STHHHHHHHHHTC---TTSCHHHHHHHHHHHHHHHHHCG----------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHc---CHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHHHccH----------
Confidence 4444444444344577777777776554 3556666555543 35678899999998888664310
Q ss_pred HHHHhhcCCCcchhhhHHhhhhhhccCCCh----hhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhH
Q psy14014 133 LVQRLASGDWFTSRTSACGLFSVCYPRVTA----GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDII 208 (615)
Q Consensus 133 ~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~----~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll 208 (615)
..+++ .+++.+++.+.....+ ...||...+.++..+++...+ .|+.++
T Consensus 73 -------------------------~~l~~~~~~~ir~~ll~~l~~~~~~-~~~vr~kl~~~la~i~~~~~p--~Wp~~l 124 (971)
T 2x1g_F 73 -------------------------HEVPPENREELKQKILESIVRFAGG-PKIVLNRLCISLGAYIVHMLG--EWPGAI 124 (971)
T ss_dssp -------------------------GGCCGGGHHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHTTC--C-----
T ss_pred -------------------------hhCCHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHccc--cccHHH
Confidence 11222 2344555555554433 489999999999999988655 588888
Q ss_pred HHHHHhhccC------chhHHHHHHHHHHHHHhhcC-h----------h---hHHHhHHHHHHHhcCC---C-----ChH
Q psy14014 209 PMFVNLAQDE------QDSVRLLAVEACVSIASLLS-Q----------S---DVEQLVMPTLRQCSGD---T-----SWR 260 (615)
Q Consensus 209 ~~l~~~~~d~------~~~vr~~a~~~l~~l~~~~~-~----------~---~~~~~l~~~l~~~~~d---~-----~~~ 260 (615)
+-+.+.++.+ +...+..++..|..+++.+. . + ...+.+++.+.+++++ + .|.
T Consensus 125 ~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~ 204 (971)
T 2x1g_F 125 EEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYS 204 (971)
T ss_dssp -HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchh
Confidence 8888888764 56788899999988875321 0 0 1123455555554432 2 248
Q ss_pred HHHHHHHHHHHHHHH--hCccchhhhHHHHHHHhh----------------cCCcHHHHHHHHHHHHHHHhhccccchhH
Q psy14014 261 VRYMVADKFTDLQKA--VGPEITKTDLVQAFQMLL----------------KDSEAEVRAAAANKVRDFCQNLDAYNQEN 322 (615)
Q Consensus 261 vR~~~~~~l~~l~~~--~~~~~~~~~l~~~l~~~l----------------~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 322 (615)
++..+.+++..+... .+.. ....+++.+.. + .+.++++|..|+.++..+...-..... .
T Consensus 205 ~~~~al~~l~~~~~~~~ip~~-~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~-~ 281 (971)
T 2x1g_F 205 NMNRAVKCVGTWIKNIGYTIE-GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNY-P 281 (971)
T ss_dssp HHHHHHHHHHHHHHHSCCCGG-GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGC-H
T ss_pred HHHHHHHHHHHHHhhCCcCcc-ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCcccccc-H
Confidence 999999999987773 4443 34567776665 4 125689999999999998874221111 1
Q ss_pred HHHHhhHHHHHH-------hhCCCC---HHHHHHHHHHHHhhchh----hc---------chhhhhhhHHHHHHhhcC--
Q psy14014 323 IIMTYILPYVKD-------LVADPN---QHVKSALASVIMGLSPI----LG---------KHNTVDHLLPLFLSQLKD-- 377 (615)
Q Consensus 323 ~~~~~l~p~l~~-------~~~d~~---~~vR~~~~~~l~~l~~~----~g---------~~~~~~~l~p~l~~~l~d-- 377 (615)
.....++|.+.. ...+.+ ......+++.+..+++. +. .......+++.+.++...
T Consensus 282 ~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~ 361 (971)
T 2x1g_F 282 KTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPG 361 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCC
Confidence 233444444432 224444 26666677777766632 11 011233455666665533
Q ss_pred ---CChhHHHHHHHhhhHhhhhh-c-------hhHHHHHH-HHHhhhhhhhhccccc----hhhhhhhhHHHHHhhhcCC
Q psy14014 378 ---ECPEVRLNIISNLDCVNEVI-G-------IQQWRVRL-AIIEYMPLLAGQLGVE----FFDEKLNALSIVELAEDSK 441 (615)
Q Consensus 378 ---~~~~vr~~a~~~l~~l~~~~-~-------~~~~~~~~-~i~~~l~~l~~~~~~~----~~~~~l~~~~i~~~~~~~~ 441 (615)
.+++|...++..+..+.+.. . ...+.... .+.+.++.+..++..+ ++... +. + ++..
T Consensus 362 ~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d---~~--e--~~~f 434 (971)
T 2x1g_F 362 IYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWS---SD--D--LECF 434 (971)
T ss_dssp CTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSC---HH--H--HHHH
T ss_pred CCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccC---Hh--H--HHHH
Confidence 46889999999988876622 1 01111100 1111222222222100 00000 00 0 0011
Q ss_pred chHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCC-----cchHHHHHHHHHHHHHHHHhChHH--hhhchhHHHHhh
Q psy14014 442 WRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVD-----HVYAIREAATLNLKKLVEQFGSEW--AQSTVIPKVVAM 514 (615)
Q Consensus 442 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-----~~~~vR~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~ 514 (615)
...|..+.+.+..++..+|. ...+.+++.+...+.. .+|..|++++.+++.+++.+..+. ....+++.+..+
T Consensus 435 ~~~R~~~~~~l~~~~~~~~~-~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l 513 (971)
T 2x1g_F 435 RCYRQDISDTFMYCYDVLND-YILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEI 513 (971)
T ss_dssp HHHHHHHHHHHHHHHTTCTT-HHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhc
Confidence 24788888999888887773 3445566666655543 689999999999999988765422 223344533333
Q ss_pred h-cCCCchHHHHHHHHHHHHHhhhChh-hHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHHHHHhhh
Q psy14014 515 S-RDQNYLHRMTCLFCINVLAEACGPT-VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 592 (615)
Q Consensus 515 ~-~d~~~~~R~~a~~~l~~l~~~~~~~-~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l 592 (615)
. .|+++.+|..+++++|.+++.+... .+.+.++|.+...+ | +.|+..|+.++..+++.++.. +.+.+.+++..+
T Consensus 514 ~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~-l~p~~~~ll~~l 589 (971)
T 2x1g_F 514 PYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQ-LKPYADPLLNAC 589 (971)
T ss_dssp CTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHH
T ss_pred CccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHH
Confidence 3 2568999999999999999887642 34566778777777 4 889999999999999776532 344555555443
Q ss_pred ---cCC--CCccHHHHHHHHHHHHhhc
Q psy14014 593 ---NGD--TDVDVKYFAQEAISSIADS 614 (615)
Q Consensus 593 ---~~d--~d~~v~~~a~~a~~~~~~~ 614 (615)
... -+.+++..+.+|++.++..
T Consensus 590 ~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 590 HASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 332 4678999999999988764
No 41
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.69 E-value=7.7e-13 Score=149.31 Aligned_cols=521 Identities=9% Similarity=0.016 Sum_probs=306.9
Q ss_pred ccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCc------H-HHHHHHHHHhccccCCC----CC---------
Q psy14014 25 EDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDE------D-EVLLALAEQLGTFTPNV----GG--------- 84 (615)
Q Consensus 25 ~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~------~-~vr~~a~~~l~~l~~~~----~~--------- 84 (615)
+...+|......+..++....+ .|+++++.+.+.++.+ + ..+..+...|..+.+.+ ..
T Consensus 97 ~~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~ 174 (971)
T 2x1g_F 97 GPKIVLNRLCISLGAYIVHMLG--EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAE 174 (971)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTC--C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccc--cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHH
Confidence 3578999999999999998776 6888999988876542 3 35555555555444210 00
Q ss_pred -cchhhhchHHHhhhhcCc-h-------hHHHHHHHHHHHHHHh--hcChhHHhhhHHHHHHHh----h-----------
Q psy14014 85 -PEYVHCLLPPLESLATVE-E-------TVVRDKAVESLRLISA--QHSPHDLEAHFVPLVQRL----A----------- 138 (615)
Q Consensus 85 -~~~~~~l~~~l~~l~~~~-~-------~~vr~~a~~~l~~l~~--~~~~~~~~~~~l~~l~~l----~----------- 138 (615)
....+.+++.+.+++.+. + ..++..+++++..... +++.. ....+++.+..+ .
T Consensus 175 l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~-~~~~ll~~l~~L~~~~~~~~~~~~~~~~ 253 (971)
T 2x1g_F 175 IAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE-GCVTITAVLLEVVHKCYWPCIHAGDGCM 253 (971)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG-GHHHHHHHHHHHHHHHHSSSCC---CCC
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc-ccccHHHHHHhhhhhhcccccccccccc
Confidence 012345555565554322 1 2789999999998887 56655 556677766552 0
Q ss_pred cCCCcchhhhHHhhhhhhccCCCh----hhHHHHHHHHHH-------HhCCCC---hHHHHHHHHhHHHHHHHhch----
Q psy14014 139 SGDWFTSRTSACGLFSVCYPRVTA----GVKAELRSHFRN-------LCQDDT---PMVRRAAAGKLGELAKVVEV---- 200 (615)
Q Consensus 139 ~~~~~~~r~~a~~~l~~~~~~~~~----~~~~~l~~~l~~-------l~~d~~---~~vR~~a~~~l~~l~~~~~~---- 200 (615)
.++....|..|+.++..+...-.. .....+++.+.. ...+.+ ....+..++.+..+++....
T Consensus 254 ~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~ 333 (971)
T 2x1g_F 254 TADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLS 333 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012356788888888877764321 222333333322 224445 37788888888888754221
Q ss_pred ---------hhhHhhhHHHHHHhhcc-----CchhHHHHHHHHHHHHHhhc-C------hh-------hHHHhHHHHHHH
Q psy14014 201 ---------DYLKTDIIPMFVNLAQD-----EQDSVRLLAVEACVSIASLL-S------QS-------DVEQLVMPTLRQ 252 (615)
Q Consensus 201 ---------~~~~~~ll~~l~~~~~d-----~~~~vr~~a~~~l~~l~~~~-~------~~-------~~~~~l~~~l~~ 252 (615)
......+++.+...... .++.|+..++..|..+++.. . .. .+...+++.+..
T Consensus 334 ~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 413 (971)
T 2x1g_F 334 GITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVR 413 (971)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 11223455555555433 47889999999999887732 1 01 122234444443
Q ss_pred hc---CCC-----C-------hHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcC-----CcHHHHHHHHHHHHHHH
Q psy14014 253 CS---GDT-----S-------WRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKD-----SEAEVRAAAANKVRDFC 312 (615)
Q Consensus 253 ~~---~d~-----~-------~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-----~~~~vr~~a~~~l~~~~ 312 (615)
.+ +|. + ...|+++..++..++..+++. ..+.+++.+...+.. .++..|++++.+++.++
T Consensus 414 ~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~ia 492 (971)
T 2x1g_F 414 KSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDY-ILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVA 492 (971)
T ss_dssp HTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTT
T ss_pred HhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 33 121 1 147788888888888776632 334555555555543 67889999999999998
Q ss_pred hhccccchhHHHHHhhHHHHHHhh-CCCCHHHHHHHHHHHHhhchhhcc-hhhhhhhHHHHHHhhcCCChhHHHHHHHhh
Q psy14014 313 QNLDAYNQENIIMTYILPYVKDLV-ADPNQHVKSALASVIMGLSPILGK-HNTVDHLLPLFLSQLKDECPEVRLNIISNL 390 (615)
Q Consensus 313 ~~~~~~~~~~~~~~~l~p~l~~~~-~d~~~~vR~~~~~~l~~l~~~~g~-~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l 390 (615)
+.+..... ..++.+++.+..+. +|+++.||..++++++.+++.++. ..+.+.++|.+...+ + +.|+..|+.++
T Consensus 493 e~~~~~~~--~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al 567 (971)
T 2x1g_F 493 EHFGGEEK--RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGL 567 (971)
T ss_dssp TC--------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHH
T ss_pred hhcChhhh--HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHH
Confidence 87664332 34556666554444 267999999999999999988774 345667788888888 4 78999999999
Q ss_pred hHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhc--CCchHHHHHHHHhHHHHhhhChHh---HH
Q psy14014 391 DCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAED--SKWRVRLAIIEYMPLLAGQLGVEF---FD 465 (615)
Q Consensus 391 ~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~--~~~~vr~~~~~~l~~l~~~~~~~~---~~ 465 (615)
..+.+..+.. +. .+++.+ + ..+.+.+.. .....+..+.++++.++...+.+. +.
T Consensus 568 ~~l~~~~~~~-l~------p~~~~l------------l--~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~ 626 (971)
T 2x1g_F 568 KELCRDCQLQ-LK------PYADPL------------L--NACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYL 626 (971)
T ss_dssp HHHHHHCHHH-HH------HHHHHH------------H--HHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred HHHHHHHHHh-cc------ccHHHH------------H--HHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9888654421 11 122211 1 234444544 345788899999999988765322 22
Q ss_pred HHHHHHHHH----hcCCc--chHHHHHHHH---HHHHHHHHhChH---------------HhhhchhHHHHhhhcC--CC
Q psy14014 466 EKLNALCMT----WLVDH--VYAIREAATL---NLKKLVEQFGSE---------------WAQSTVIPKVVAMSRD--QN 519 (615)
Q Consensus 466 ~~l~~~l~~----~l~d~--~~~vR~~a~~---~l~~l~~~~~~~---------------~~~~~i~~~l~~~~~d--~~ 519 (615)
..+++.++. .+... +...+..... +++.+...++.. ...+.++|.+...+.+ .+
T Consensus 627 ~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 706 (971)
T 2x1g_F 627 DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEE 706 (971)
T ss_dssp HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhcccc
Confidence 233333333 22222 2223444444 444444444421 1224577777766543 35
Q ss_pred chHHHHHHHHHHHHHhhhChhh--HHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhh
Q psy14014 520 YLHRMTCLFCINVLAEACGPTV--TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET 578 (615)
Q Consensus 520 ~~~R~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~ 578 (615)
..+...++.+++.++..++.+. +.+.+++.+....+.... .++...++.++..++.
T Consensus 707 ~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~ 764 (971)
T 2x1g_F 707 IDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC---APTLEISKTAIVMFFK 764 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCC
Confidence 6788899999999988776543 345566666655543222 3577777777766654
No 42
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.68 E-value=1.9e-13 Score=144.42 Aligned_cols=507 Identities=9% Similarity=0.027 Sum_probs=323.0
Q ss_pred HHHHHHHhcC---ccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcH-HHHHHHHHHhccccCCCCCcchhhh
Q psy14014 15 IAVLIDELKN---EDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAEQLGTFTPNVGGPEYVHC 90 (615)
Q Consensus 15 i~~ll~~l~s---~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~-~vr~~a~~~l~~l~~~~~~~~~~~~ 90 (615)
++.+-..+++ .|...|..++..+-.+ ...|.+ . ..+.+-+.+++.+++ +.|+.+--.+..+++. .++...-
T Consensus 37 ~~~ir~~~~~~~~~~~~~k~~~l~Kli~l-~~~G~d-~-s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~--~~e~~~L 111 (621)
T 2vgl_A 37 LANIRSKFKGDKALDGYSKKKYVCKLLFI-FLLGHD-I-DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNS--NSELIRL 111 (621)
T ss_dssp HHHHHHHHHSSSCCCHHHHHHHHHHHHHH-HHHSCC-C-CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCC--CHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHH-HHcCCC-C-chhHHHHHHHhcCCCHHHHHHHHHHHHHHccC--CcHHHHH
Confidence 4555566664 4777787887777665 335665 2 234445555666666 6898888888887763 2344444
Q ss_pred chHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhh--cCCCcchhhhHHhhhhhhccCCChhhHH--
Q psy14014 91 LLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLA--SGDWFTSRTSACGLFSVCYPRVTAGVKA-- 166 (615)
Q Consensus 91 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~--~~~~~~~r~~a~~~l~~~~~~~~~~~~~-- 166 (615)
.++.+.+-+.++++.+|-.|+.+++.+.. + .+.+.+.|.+.++. .|.+..+|+.|+..+..++...+ +..+
T Consensus 112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~---~-e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p-~~~~~~ 186 (621)
T 2vgl_A 112 INNAIKNDLASRNPTFMGLALHCIANVGS---R-EMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP-DLVPMG 186 (621)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHCC---H-HHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG-GGCCCC
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhccCC---H-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh-hhcCch
Confidence 56677777889999999999999998854 3 35567888888887 78889999999988888776433 3333
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchh--hhHhhhHHHHHHhhccC-------------chhHHHHHHHHHH
Q psy14014 167 ELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD--YLKTDIIPMFVNLAQDE-------------QDSVRLLAVEACV 231 (615)
Q Consensus 167 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~~~~d~-------------~~~vr~~a~~~l~ 231 (615)
.+++.+..++.|+++.|+.+++.++..++..-+.. ...+.++..+.+++.+. +++.+...++.+.
T Consensus 187 ~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~ 266 (621)
T 2vgl_A 187 DWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQ 266 (621)
T ss_dssp SCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGG
T ss_pred hHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHH
Confidence 67788888999999999999999999998754431 11223334444443321 5677777777766
Q ss_pred HHHhhcChhhHHHhHHHHHHHhc----CCC----------ChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCc
Q psy14014 232 SIASLLSQSDVEQLVMPTLRQCS----GDT----------SWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSE 297 (615)
Q Consensus 232 ~l~~~~~~~~~~~~l~~~l~~~~----~d~----------~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~ 297 (615)
.++..-. ......+.+.+..++ +-+ +..|-..++.++..+. ............+..++.+.+
T Consensus 267 ~~~~~~d-~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~---~~~~~~~~~~~~L~~~L~~~~ 342 (621)
T 2vgl_A 267 CYPPPED-PAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD---SEPNLLVRACNQLGQFLQHRE 342 (621)
T ss_dssp GSSSCSS-HHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHSSCSC
T ss_pred HhCCCCC-HHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhcCCC
Confidence 5543211 122333333333322 112 1244455555544432 221223456777888899999
Q ss_pred HHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhC-CCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhc
Q psy14014 298 AEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVA-DPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLK 376 (615)
Q Consensus 298 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~-d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~ 376 (615)
+++|..|+.++..++...+.. .......+.+...+. |++..+|..+++.+..++. +...+.++..+.+.+.
T Consensus 343 ~niry~aL~~l~~l~~~~~~~----~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~----~~Nv~~Iv~eL~~yl~ 414 (621)
T 2vgl_A 343 TNLRYLALESMCTLASSEFSH----EAVKTHIETVINALKTERDVSVRQRAVDLLYAMCD----RSNAQQIVAEMLSYLE 414 (621)
T ss_dssp HHHHHHHHHHHHHHTTCTTTH----HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhccCcH----HHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC----hhhHHHHHHHHHHHHH
Confidence 999999999999998754311 234455666667777 9999999999999888764 2335567777888888
Q ss_pred CCChhHHHHHHHhhhHhhhhhch-hHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHH
Q psy14014 377 DECPEVRLNIISNLDCVNEVIGI-QQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLL 455 (615)
Q Consensus 377 d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l 455 (615)
+.+.+.|..++.+++.+...+.. ..|- + ..+.+++++....+...++..+..+
T Consensus 415 ~~d~~~~~~~v~~I~~la~k~~~~~~~~--------v------------------~~Ll~ll~~~~~~v~~ev~~~l~~i 468 (621)
T 2vgl_A 415 TADYSIREEIVLKVAILAEKYAVDYTWY--------V------------------DTILNLIRIAGDYVSEEVWYRVIQI 468 (621)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHCSSTHHH--------H------------------HHHHHHHHHHGGGSCSHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHhcCCcHHHH--------H------------------HHHHHHHHhhcccchHHHHHHHHHH
Confidence 88899999999998888765432 2332 1 1222222221112333333343333
Q ss_pred HhhhChHhHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHHHHHhChHH-h-hhchhHHHHhhhcCCCchHHHHHHHHHH
Q psy14014 456 AGQLGVEFFDEKLNALCMTWLVDHV--YAIREAATLNLKKLVEQFGSEW-A-QSTVIPKVVAMSRDQNYLHRMTCLFCIN 531 (615)
Q Consensus 456 ~~~~~~~~~~~~l~~~l~~~l~d~~--~~vR~~a~~~l~~l~~~~~~~~-~-~~~i~~~l~~~~~d~~~~~R~~a~~~l~ 531 (615)
...... .....+..+.+.+.++. ..+-..+++.+|..+..+.... . ...++..+.+.+.+.++.+|..++.++.
T Consensus 469 i~~~~~--~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~ 546 (621)
T 2vgl_A 469 VINRDD--VQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYI 546 (621)
T ss_dssp HGGGCS--CHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HhCChh--HHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 332211 22334444556666653 2455567788888876543210 0 1134556666667889999999999999
Q ss_pred HHHhhhChhhHHHhhHHHHHhhCC--CCCchHHHHHHHHHHHHh
Q psy14014 532 VLAEACGPTVTANFLLPTVLNMAG--DNVANVRFNVAKTLQKIG 573 (615)
Q Consensus 532 ~l~~~~~~~~~~~~i~~~l~~~~~--D~~~~vr~~a~~~l~~l~ 573 (615)
.+....+. ..+.+...+..+.. |.+++||..|..-+.-+.
T Consensus 547 Kl~~~~p~--~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~ 588 (621)
T 2vgl_A 547 KFVNLFPE--VKATIQDVLRSDSQLKNADVELQQRAVEYLRLST 588 (621)
T ss_dssp HHHHHCGG--GHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHChH--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHc
Confidence 98765432 23445555555566 999999999988776653
No 43
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.68 E-value=3.4e-12 Score=144.13 Aligned_cols=365 Identities=10% Similarity=0.069 Sum_probs=223.4
Q ss_pred HHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhc----CCCChHHHHHHHHHHHHHHHHhCccc--hhhhHHHHHHHhhcC
Q psy14014 222 VRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS----GDTSWRVRYMVADKFTDLQKAVGPEI--TKTDLVQAFQMLLKD 295 (615)
Q Consensus 222 vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~----~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d 295 (615)
.|..+..++..++...+.+ ..+.+.+.+.+.+ .+++|+.|.+++.+++.++....... ....+++.+..+ .+
T Consensus 423 ~r~~~~~~L~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l-~~ 500 (963)
T 2x19_B 423 YRVDISDTLMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRI-SI 500 (963)
T ss_dssp HHHHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGS-CC
T ss_pred HHHHHHHHHHHHHHHccHH-HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhC-CC
Confidence 4677777888887777643 4556666666666 67899999999999999998765432 223455544333 44
Q ss_pred CcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcch--hhhhhhHHHHHH
Q psy14014 296 SEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKH--NTVDHLLPLFLS 373 (615)
Q Consensus 296 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~--~~~~~l~p~l~~ 373 (615)
+++.||..++..++.+...+... ..+++.+++.+...+++ +.|+..++.++..+++..+.. .+.+.++..+.+
T Consensus 501 ~~~~vr~~~~~~l~~~~~~l~~~---~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~ 575 (963)
T 2x19_B 501 SNVQLADTVMFTIGALSEWLADH---PVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQD 575 (963)
T ss_dssp CSHHHHHHHHHHHHHTHHHHHHC---HHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhC---HHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 57889999999999999876532 24678888888888866 899999999999998765532 234555666666
Q ss_pred hhcC--CChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhc-CCchHHH---H
Q psy14014 374 QLKD--ECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAED-SKWRVRL---A 447 (615)
Q Consensus 374 ~l~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~-~~~~vr~---~ 447 (615)
.+.. -+...+..++++++.++...+.+...+.. ..+++.+. ..+....+. .+...+. .
T Consensus 576 ~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~--~~l~~~l~--------------~~l~~~~~~~~~~~~~~~~~~ 639 (963)
T 2x19_B 576 VLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNL--HSLISPYI--------------QQLEKLAEEIPNPSNKLAIVH 639 (963)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHH--HHHHHHHH--------------HHHHHHHSSCSCHHHHHHHHH
T ss_pred HhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH--HHHHHHHH--------------HHHHHHHhCCCCHHHHHHHHH
Confidence 6654 35678999999999888766522222111 11111110 111111211 1333333 4
Q ss_pred HHHHhHHHHhhhCh------------------------HhHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHhChH
Q psy14014 448 IIEYMPLLAGQLGV------------------------EFFDEKLNALCMTWLV--DHVYAIREAATLNLKKLVEQFGSE 501 (615)
Q Consensus 448 ~~~~l~~l~~~~~~------------------------~~~~~~l~~~l~~~l~--d~~~~vR~~a~~~l~~l~~~~~~~ 501 (615)
.++.++.+++.++. ..+.+.++|.+...+. ..+..+++.+..+++.++..+|..
T Consensus 640 ~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~ 719 (963)
T 2x19_B 640 ILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDD 719 (963)
T ss_dssp HHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSST
T ss_pred HHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhccc
Confidence 55666666666542 1134566776665543 234589999999999999888865
Q ss_pred Hh--hhchhHHHHhhhcC-CCchHHHHHHHHHHHHHhhhChh-----hHH---HhhHHHHHhhC-C--CCCchHHHHHHH
Q psy14014 502 WA--QSTVIPKVVAMSRD-QNYLHRMTCLFCINVLAEACGPT-----VTA---NFLLPTVLNMA-G--DNVANVRFNVAK 567 (615)
Q Consensus 502 ~~--~~~i~~~l~~~~~d-~~~~~R~~a~~~l~~l~~~~~~~-----~~~---~~i~~~l~~~~-~--D~~~~vr~~a~~ 567 (615)
+. .+.+++.+...+.. +. ...+..++.+...++.+ .+. +.++..+...+ + +..+++|.....
T Consensus 720 ~~~~l~~~~~~l~~~~~~~~~----~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ 795 (963)
T 2x19_B 720 FAPMVPQLCEMLGRMYSTIPQ----ASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQ 795 (963)
T ss_dssp TGGGHHHHHHHHHHHHHHSCC----HHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHcCCc----cHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHH
Confidence 32 22333333333322 11 13455566665522221 111 12222222222 2 246899999999
Q ss_pred HHHHHhHhhhhhhH-----HhhHHHHHhhhcCCCCccHHHHHHHHHHHHhh
Q psy14014 568 TLQKIGPILETNVI-----QSQVKPALDKLNGDTDVDVKYFAQEAISSIAD 613 (615)
Q Consensus 568 ~l~~l~~~~~~~~~-----~~~~~~~l~~l~~d~d~~v~~~a~~a~~~~~~ 613 (615)
.+..+...++...+ .+.+.+.+...++.+|.++...+...+..+..
T Consensus 796 ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~ 846 (963)
T 2x19_B 796 LLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLP 846 (963)
T ss_dssp HHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 99999977654322 23333333334578899999999988887653
No 44
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.66 E-value=1.5e-12 Score=147.13 Aligned_cols=491 Identities=15% Similarity=0.108 Sum_probs=291.5
Q ss_pred HHHHHHHHHhccccCCCCCcchhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcch
Q psy14014 66 EVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTS 145 (615)
Q Consensus 66 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~ 145 (615)
+.|+.|-+.|..+-+ .++.|..+..++. .+.+..||..|+..|.+.....-
T Consensus 40 ~~r~~A~~~L~~~~~---~p~~~~~~~~lL~---~~~~~~vr~~aa~~L~~~i~~~w----------------------- 90 (963)
T 2x19_B 40 ENKNLAQKWLMQAQV---SPQAWHFSWQLLQ---PDKVPEIQYFGASALHIKISRYW----------------------- 90 (963)
T ss_dssp HHHHHHHHHHHHHHH---STTHHHHHHHHTS---TTSCHHHHHHHHHHHHHHHHHCG-----------------------
T ss_pred HHHHHHHHHHHHHhc---CHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHhCH-----------------------
Confidence 456666666655433 2344444444332 24566788888777776554210
Q ss_pred hhhHHhhhhhhccCCChh----hHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhcc----
Q psy14014 146 RTSACGLFSVCYPRVTAG----VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQD---- 217 (615)
Q Consensus 146 r~~a~~~l~~~~~~~~~~----~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d---- 217 (615)
..++++ +++.+++.+.... ...+.||...+.++..+++...++. |+.+++-+.+.++.
T Consensus 91 ------------~~l~~~~~~~ir~~ll~~l~~~~-~~~~~ir~kl~~~la~i~~~~~p~~-Wp~~l~~l~~~~~~~~~~ 156 (963)
T 2x19_B 91 ------------SDIPTDQYESLKAQLFTQITRFA-SGSKIVLTRLCVALASLALSMMPDA-WPCAVADMVRLFQAEDSP 156 (963)
T ss_dssp ------------GGSCGGGHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHCC----
T ss_pred ------------HhCCHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhCccc-cchHHHHHHHHHhhhccC
Confidence 112222 2334444444432 2358899999999999998765543 78899988888865
Q ss_pred -CchhHHHHHHHHHHHHHhhcC-h--------------hhHHHhHHHHHHHhcCCCCh--HHHHHHHHHHHHHHHHhCcc
Q psy14014 218 -EQDSVRLLAVEACVSIASLLS-Q--------------SDVEQLVMPTLRQCSGDTSW--RVRYMVADKFTDLQKAVGPE 279 (615)
Q Consensus 218 -~~~~vr~~a~~~l~~l~~~~~-~--------------~~~~~~l~~~l~~~~~d~~~--~vR~~~~~~l~~l~~~~~~~ 279 (615)
++...+..++..|..+++.+. . ....+.+++.+.+++.+.+. .++..+.+++..... .+..
T Consensus 157 ~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~ 235 (963)
T 2x19_B 157 VDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVP 235 (963)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCC
T ss_pred CCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCC
Confidence 255678888999988886331 1 12245577777777765432 478888888876655 3332
Q ss_pred c-hhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHH-------hhCCCCHHHHHHHHHHH
Q psy14014 280 I-TKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKD-------LVADPNQHVKSALASVI 351 (615)
Q Consensus 280 ~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~-------~~~d~~~~vR~~~~~~l 351 (615)
. ....+++.+.+.+. ++++|..|+.++..++..-.+.... .....++|.+.. ...+.+......+++.+
T Consensus 236 ~~~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~ 312 (963)
T 2x19_B 236 LQDCEALIQAAFAALQ--DSELFDSSVEAIVNAISQPDAQRYV-NTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIA 312 (963)
T ss_dssp GGGTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTCTTGGGCH-HHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHhC--CchHHHHHHHHHHHHHcccccccCH-HHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2 12567888877774 5678999999999988743221111 223333333222 22334555566666777
Q ss_pred Hhhchhhcc--------hhhhhhhHHHHHHhhcC-----CChhHHHHHHHhhhHhhhhhc-------hhHHHHHH-HHHh
Q psy14014 352 MGLSPILGK--------HNTVDHLLPLFLSQLKD-----ECPEVRLNIISNLDCVNEVIG-------IQQWRVRL-AIIE 410 (615)
Q Consensus 352 ~~l~~~~g~--------~~~~~~l~p~l~~~l~d-----~~~~vr~~a~~~l~~l~~~~~-------~~~~~~~~-~i~~ 410 (615)
..+++.... ......+++.+.++..+ .++.+...++..+..+.+... ...+.... .+.+
T Consensus 313 ~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 392 (963)
T 2x19_B 313 VALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQ 392 (963)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 666543211 11223455566665554 356777777777777665221 11111000 1111
Q ss_pred hhhhhhhccccchhhhhhhhHHHHHhhhc--CCc-hHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhc----CCcchHH
Q psy14014 411 YMPLLAGQLGVEFFDEKLNALSIVELAED--SKW-RVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWL----VDHVYAI 483 (615)
Q Consensus 411 ~l~~l~~~~~~~~~~~~l~~~~i~~~~~~--~~~-~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l----~d~~~~v 483 (615)
.++.+...+.. ++. ..+..+..| ..| ..|..+.+.+..++...|.+ ..+.+++.+...+ .+.+|..
T Consensus 393 l~~~ll~~~~~---p~~---~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~w~~ 465 (963)
T 2x19_B 393 LVDVLLHKAQF---PSD---EEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSWQH 465 (963)
T ss_dssp HHHHHHHHHSC---CCH---HHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHTCCCSCCHHH
T ss_pred HHHHHHHHHcC---CCc---ccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHH-HHHHHHHHHHHHHHhcCCCCchHH
Confidence 12222222210 000 000000001 112 35778888888888877754 3455666666666 6778999
Q ss_pred HHHHHHHHHHHHHHhChHH--hhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhCh-hhHHHhhHHHHHhhCCCCCch
Q psy14014 484 REAATLNLKKLVEQFGSEW--AQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGP-TVTANFLLPTVLNMAGDNVAN 560 (615)
Q Consensus 484 R~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~-~~~~~~i~~~l~~~~~D~~~~ 560 (615)
|++++.+++.++..+..+. ....+++.+.++ .++++.+|..+++++|.+.+.+.. ..+...+++.+...+.| +.
T Consensus 466 ~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l-~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~ 542 (963)
T 2x19_B 466 TEALLYGFQSIAETIDVNYSDVVPGLIGLIPRI-SISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PE 542 (963)
T ss_dssp HHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGS-CCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GG
T ss_pred HHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--ch
Confidence 9999999999998765421 222344433333 446888999999999999987543 24566788888888866 89
Q ss_pred HHHHHHHHHHHHhHhhhhhhHHhhHHHHHhhh---cC--CCCccHHHHHHHHHHHHhhc
Q psy14014 561 VRFNVAKTLQKIGPILETNVIQSQVKPALDKL---NG--DTDVDVKYFAQEAISSIADS 614 (615)
Q Consensus 561 vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l---~~--d~d~~v~~~a~~a~~~~~~~ 614 (615)
|+..|+.++..++..++.. +.+.+.+++..| .. +-+.+++..+.+|++.++..
T Consensus 543 V~~~A~~al~~l~~~~~~~-l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~ 600 (963)
T 2x19_B 543 LSVSSVSTLKKICRECKYD-LPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSA 600 (963)
T ss_dssp GHHHHHHHHHHHHHHTGGG-CTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhc
Confidence 9999999999999766532 334445554443 22 34678999999999988753
No 45
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.64 E-value=2.2e-12 Score=146.27 Aligned_cols=514 Identities=9% Similarity=0.028 Sum_probs=297.7
Q ss_pred cchhhhhhhcCCcHHHHHHHHHHhccccCCCCCcchhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHH
Q psy14014 52 ELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFV 131 (615)
Q Consensus 52 ~ll~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l 131 (615)
++...+..+.+.+++.|+.|-+.|..+-+ .++++..+..++.. +.+..+|..|+..|.+.....
T Consensus 17 ~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~---~p~~~~~l~~iL~~---s~~~~vr~~aa~~Lk~~i~~~---------- 80 (1049)
T 3m1i_C 17 LLDQVVSTFYQGSGVQQKQAQEILTKFQD---NPDAWQKADQILQF---STNPQSKFIALSILDKLITRK---------- 80 (1049)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHH---STTGGGGHHHHHHH---CSCHHHHHHHHHHHHHHHHHT----------
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHh---CchHHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHhh----------
Confidence 34444444444444577777777766543 23455555555432 456788888888877765421
Q ss_pred HHHHHhhcCCCcchhhhHHhhhhhhccCCChhhH----HHHHHHHHHHhCCC-----ChHHHHHHHHhHHHHHHHhchhh
Q psy14014 132 PLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVK----AELRSHFRNLCQDD-----TPMVRRAAAGKLGELAKVVEVDY 202 (615)
Q Consensus 132 ~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~----~~l~~~l~~l~~d~-----~~~vR~~a~~~l~~l~~~~~~~~ 202 (615)
+..++++.+ +.+++.+.....++ ++.+|...+.+++.+++.-.+ .
T Consensus 81 -------------------------W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~ 134 (1049)
T 3m1i_C 81 -------------------------WKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-Q 134 (1049)
T ss_dssp -------------------------GGGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-T
T ss_pred -------------------------CccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc-c
Confidence 011222222 23333333322222 468999999999999987544 3
Q ss_pred hHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcCh---------------hhH---HHhHHHHHHHhcCC-CChHHHH
Q psy14014 203 LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ---------------SDV---EQLVMPTLRQCSGD-TSWRVRY 263 (615)
Q Consensus 203 ~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---------------~~~---~~~l~~~l~~~~~d-~~~~vR~ 263 (615)
.|+.+++.+.+.++ .++..+..++.++..+.+.+.. +.+ .+.+++.+.+++.+ ++..++.
T Consensus 135 ~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~ 213 (1049)
T 3m1i_C 135 NWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIV 213 (1049)
T ss_dssp TCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred cchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 48889998888886 4555677788888877754331 111 22345555555543 4577899
Q ss_pred HHHHHHHHHHHHhCccc-hhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhc-cccc--hhHH---HHHhhHHHHHH--
Q psy14014 264 MVADKFTDLQKAVGPEI-TKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNL-DAYN--QENI---IMTYILPYVKD-- 334 (615)
Q Consensus 264 ~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~-~~~~--~~~~---~~~~l~p~l~~-- 334 (615)
.+.+++..+....+... ..+.+++.+.+.+. .++++|..|+.++..++..- ++.. .... +.+.++..+..
T Consensus 214 ~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si 292 (1049)
T 3m1i_C 214 ATLESLLRYLHWIPYRYIYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSV 292 (1049)
T ss_dssp HHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhh
Confidence 99999888766554322 12356666663222 26889999999999988652 2210 0011 11222222211
Q ss_pred ------------hhCCCCHHHHHHHHHHHHhhchhhc----c----hhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhh
Q psy14014 335 ------------LVADPNQHVKSALASVIMGLSPILG----K----HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN 394 (615)
Q Consensus 335 ------------~~~d~~~~vR~~~~~~l~~l~~~~g----~----~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~ 394 (615)
..++.++.....+++.+..+++... . ......+++.+..+...++.+|...++..+..+.
T Consensus 293 ~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~ 372 (1049)
T 3m1i_C 293 MPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLV 372 (1049)
T ss_dssp CCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 1234456666667776655543321 1 1123345677777666778899999998888776
Q ss_pred hhh-----chhHHHHHHHHHhhhhhhhhccccc----hhh-hhhhhHHHHHhhhc-CCchHHHHHHHHhHHHHhhhChHh
Q psy14014 395 EVI-----GIQQWRVRLAIIEYMPLLAGQLGVE----FFD-EKLNALSIVELAED-SKWRVRLAIIEYMPLLAGQLGVEF 463 (615)
Q Consensus 395 ~~~-----~~~~~~~~~~i~~~l~~l~~~~~~~----~~~-~~l~~~~i~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~~ 463 (615)
+.. ........ +.+.++.+...+..+ ++. +.. ..+....+| ..|..|..+.+.+..++... ...
T Consensus 373 ~~l~~~~~~~~~~~~~--l~~Lv~~ll~~m~~~ed~~~~~dd~~--e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~-~~~ 447 (1049)
T 3m1i_C 373 ADLFYEPLKKHIYEEI--CSQLRLVIIENMVRPEEVLVVENDEG--EIVREFVKESDTIQLYKSEREVLVYLTHLN-VID 447 (1049)
T ss_dssp HHHHHSTTCGGGGHHH--HHHHHHHHHHTCCCCTTCCEEECTTS--CEEECSSCCHHHHHHHHHHHHHHHHHHHHC-HHH
T ss_pred HHHHhchhHHHHHHHH--HHHHHHHHHHhcCCCcceeeeeCCCC--cchHhhhccchHHHHHHHHHHHHHHHHccC-HHH
Confidence 622 01111111 111122222222110 000 000 000000001 12456777788888887443 434
Q ss_pred HHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHhChH---HhhhchhHHHHhhhc-----CCCchHHHHHHHHHHHH
Q psy14014 464 FDEKLNALCMTWLV--DHVYAIREAATLNLKKLVEQFGSE---WAQSTVIPKVVAMSR-----DQNYLHRMTCLFCINVL 533 (615)
Q Consensus 464 ~~~~l~~~l~~~l~--d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~-----d~~~~~R~~a~~~l~~l 533 (615)
..+.+.+.+.+.+. ..+|..|++++.+++.++..++.. .+...+++.+..+.. ++.+.+|..+++++|..
T Consensus 448 ~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry 527 (1049)
T 3m1i_C 448 TEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQY 527 (1049)
T ss_dssp HHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHH
Confidence 45556666666664 468999999999999998766543 123445565555432 35667777799999998
Q ss_pred HhhhCh-hhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhhH-------HhhHHHHHhhh---cCCCCccHHH
Q psy14014 534 AEACGP-TVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVI-------QSQVKPALDKL---NGDTDVDVKY 602 (615)
Q Consensus 534 ~~~~~~-~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~-------~~~~~~~l~~l---~~d~d~~v~~ 602 (615)
.+.+.. ..+...+++.+...+.|+++.|+..|+.++.++++.++.... .+.+.+++..+ ..+-+.+-..
T Consensus 528 ~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~ 607 (1049)
T 3m1i_C 528 PRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVH 607 (1049)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHH
Confidence 876433 235566788888888999999999999999999987653321 14455555443 4555666667
Q ss_pred HHHHHHHHHhhc
Q psy14014 603 FAQEAISSIADS 614 (615)
Q Consensus 603 ~a~~a~~~~~~~ 614 (615)
...+|++.+.+.
T Consensus 608 ~~~eai~~ii~~ 619 (1049)
T 3m1i_C 608 TFYKACGIIISE 619 (1049)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 777888877653
No 46
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.64 E-value=1.7e-14 Score=130.35 Aligned_cols=184 Identities=21% Similarity=0.187 Sum_probs=155.8
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHh
Q psy14014 166 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQL 245 (615)
Q Consensus 166 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 245 (615)
....+.+++++.|+++.+|..++..|+.+.. ...++.+.++++|+++.+|..|+.+++.+.. +.
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------~~ 76 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ER 76 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GG
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HH
Confidence 4455677888899999999999999998642 3567888888999999999999999987642 34
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHH
Q psy14014 246 VMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIM 325 (615)
Q Consensus 246 l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 325 (615)
.+|.+.+.+.|+++.||..++.+++.+.. ...++.+..+++|+++.||..|+.+|+.+..
T Consensus 77 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------------ 136 (201)
T 3ltj_A 77 AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------------ 136 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------
Confidence 67888889999999999999999988642 4578889999999999999999999998753
Q ss_pred HhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHh
Q psy14014 326 TYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV 393 (615)
Q Consensus 326 ~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l 393 (615)
+..+|.+..+++|+++.||..++.+|+.+.. +..++.+.++++|+++.||..|..+|..+
T Consensus 137 ~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 ERAVEPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3467888999999999999999999998742 34678888899999999999999988765
No 47
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.64 E-value=1.3e-14 Score=132.20 Aligned_cols=183 Identities=20% Similarity=0.187 Sum_probs=153.6
Q ss_pred HHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHH
Q psy14014 169 RSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMP 248 (615)
Q Consensus 169 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 248 (615)
++.+..++.|+++.+|..++..|+.+.. ...+|.+.++++|+++.||..|+.+++.+.. +..+|
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~ 84 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ERAVE 84 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HHHHH
Confidence 4556777899999999999999988642 3578888899999999999999999988742 34678
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhh
Q psy14014 249 TLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYI 328 (615)
Q Consensus 249 ~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l 328 (615)
.+.+.++|+++.||..++.+++.+.. ...++.+..+++|+++.||..|+.+|+.+.. +..
T Consensus 85 ~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------------~~~ 144 (211)
T 3ltm_A 85 PLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------------ERA 144 (211)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGG
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC------------HHH
Confidence 88889999999999999999988742 4578889999999999999999999998743 346
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhh
Q psy14014 329 LPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE 395 (615)
Q Consensus 329 ~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~ 395 (615)
+|.+..+++|+++.||..++.+|+.+.. +..++.+.++++|+++.||..|..+|..+..
T Consensus 145 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 145 VEPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC---
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 7888899999999999999999998743 3567888999999999999999999987654
No 48
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.63 E-value=2.4e-14 Score=133.36 Aligned_cols=187 Identities=10% Similarity=0.123 Sum_probs=158.4
Q ss_pred HHHHhCCCChHHHHHHHHhHHHHHHHhch--hhhHhhhHHHHHHhh-ccCchhHHHHHHHHHHHHHhhcChh--hHHHhH
Q psy14014 172 FRNLCQDDTPMVRRAAAGKLGELAKVVEV--DYLKTDIIPMFVNLA-QDEQDSVRLLAVEACVSIASLLSQS--DVEQLV 246 (615)
Q Consensus 172 l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l 246 (615)
+.+.++|.+|.+|+.++..|..+++..+. ......+++.+...+ +|.+..||..|+.+++.++..++.. .+.+.+
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~i 99 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASAC 99 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 56677899999999999999999886432 122357889999999 4999999999999999999988763 445668
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHH
Q psy14014 247 MPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMT 326 (615)
Q Consensus 247 ~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 326 (615)
+|.+.+.+.|++..||.++..++..+....+ ...++|.+...+++.++.+|..++..++.++...++......+++
T Consensus 100 lp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~ 175 (242)
T 2qk2_A 100 VPSLLEKFKEKKPNVVTALREAIDAIYASTS----LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLK 175 (242)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHH
Confidence 9999999999999999999999999987543 467899999999999999999999999998877654322234678
Q ss_pred hhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchh
Q psy14014 327 YILPYVKDLVADPNQHVKSALASVIMGLSPILGKHN 362 (615)
Q Consensus 327 ~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~ 362 (615)
.++|.+..+++|+++.||..+..+++.++..+|.+.
T Consensus 176 ~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~ 211 (242)
T 2qk2_A 176 LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKA 211 (242)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHH
Confidence 899999999999999999999999999999998653
No 49
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.63 E-value=1.2e-14 Score=135.38 Aligned_cols=195 Identities=15% Similarity=0.130 Sum_probs=147.2
Q ss_pred HHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCc--cchhhhHHHHHHHhh-cCCcHHHHHHHHHHHHHHHhhcccc
Q psy14014 242 VEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGP--EITKTDLVQAFQMLL-KDSEAEVRAAAANKVRDFCQNLDAY 318 (615)
Q Consensus 242 ~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~ 318 (615)
+.+.+-+.+.+.++|.+|..|++++..+..+....+. .....++++.+...+ +|.+..||..|+.+++.++..+++.
T Consensus 12 i~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~ 91 (242)
T 2qk2_A 12 ILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKR 91 (242)
T ss_dssp CGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGG
T ss_pred ccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 3444555577778899999999999999999886332 112357899999999 4999999999999999999988765
Q ss_pred chhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhc
Q psy14014 319 NQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG 398 (615)
Q Consensus 319 ~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 398 (615)
. ..+...++|.+.+.+.|++..||.++..++..+....+ .+.++|.+...++++++.+|..++..++.+....+
T Consensus 92 ~--~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~ 165 (242)
T 2qk2_A 92 F--SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----LEAQQESIVESLSNKNPSVKSETALFIARALTRTQ 165 (242)
T ss_dssp G--HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC
T ss_pred H--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 4 25778899999999999999999999999999887654 35688999999999999999999998887655443
Q ss_pred hhH-HHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChH
Q psy14014 399 IQQ-WRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVE 462 (615)
Q Consensus 399 ~~~-~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~ 462 (615)
.+. ... +++.+ + |.+...++|+++.+|..+.++++.++..+|.+
T Consensus 166 ~~~~~~~------~l~~l------------~--p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~ 210 (242)
T 2qk2_A 166 PTALNKK------LLKLL------------T--TSLVKTLNEPDPTVRDSSAEALGTLIKLMGDK 210 (242)
T ss_dssp GGGCCHH------HHHHH------------H--HHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHH
T ss_pred CCCccHH------HHHHH------------H--HHHHHHhcCCChHHHHHHHHHHHHHHHHcCHH
Confidence 211 000 01111 1 55666666667777777777777766666654
No 50
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.58 E-value=9.8e-14 Score=126.43 Aligned_cols=189 Identities=20% Similarity=0.190 Sum_probs=148.9
Q ss_pred hhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhh
Q psy14014 205 TDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTD 284 (615)
Q Consensus 205 ~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~ 284 (615)
+..++.+.+.++|+++.+|..|+..++.+.. +..+|.+.+.+.|+++.+|..++.+|+.+.. ..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~ 81 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ER 81 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GG
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HH
Confidence 4567888888899999999999999987642 3467888888999999999999999988642 46
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhh
Q psy14014 285 LVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTV 364 (615)
Q Consensus 285 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~ 364 (615)
.++.+..+++|+++.||..|+.+|+.+.. +..+|.+.++++|+++.||..++.+++.+..
T Consensus 82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------- 141 (211)
T 3ltm_A 82 AVEPLIKALKDEDGWVRQSAAVALGQIGD------------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-------- 141 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------
Confidence 77888999999999999999999988754 3467888888999999999999999988743
Q ss_pred hhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchH
Q psy14014 365 DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRV 444 (615)
Q Consensus 365 ~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~v 444 (615)
+..+|.+.++++|+++.||..++.+|+.+.. .. .+ +.+..+++|+++.+
T Consensus 142 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----~~---------~~------------------~~L~~~l~d~~~~v 190 (211)
T 3ltm_A 142 ERAVEPLIKALKDEDGWVRQSAADALGEIGG----ER---------VR------------------AAMEKLAETGTGFA 190 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----HH---------HH------------------HHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----hh---------HH------------------HHHHHHHhCCCHHH
Confidence 2467888889999999999999998887632 11 02 45667778888999
Q ss_pred HHHHHHHhHHHHhhhC
Q psy14014 445 RLAIIEYMPLLAGQLG 460 (615)
Q Consensus 445 r~~~~~~l~~l~~~~~ 460 (615)
|..+.++|..+....+
T Consensus 191 r~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 191 RKVAVNYLETHKSFNH 206 (211)
T ss_dssp HHHHHHHHHC------
T ss_pred HHHHHHHHHhcCCCCC
Confidence 9999999888765443
No 51
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.58 E-value=1.5e-13 Score=124.06 Aligned_cols=185 Identities=21% Similarity=0.199 Sum_probs=153.7
Q ss_pred HhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhh
Q psy14014 204 KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKT 283 (615)
Q Consensus 204 ~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~ 283 (615)
.....+.++++++|+++.+|..|+..++.+.. +..++.+.+.+.|+++.+|..++..++.+.. .
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------~ 75 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------E 75 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------G
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------H
Confidence 45678889999999999999999999987642 2467888888899999999999999988642 3
Q ss_pred hHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhh
Q psy14014 284 DLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNT 363 (615)
Q Consensus 284 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~ 363 (615)
..++.+...+.|+++.||..|+.+|+.+.. +..+|.+.+.++|+++.||..++.+++.+..
T Consensus 76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------- 136 (201)
T 3ltj_A 76 RAVEPLIKALKDEDGWVRQSAAVALGQIGD------------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------- 136 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------
Confidence 678889999999999999999999998654 3467888889999999999999999998753
Q ss_pred hhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCch
Q psy14014 364 VDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWR 443 (615)
Q Consensus 364 ~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~ 443 (615)
+..+|.+.++++|+++.||..|+.+|+.+. .... + +.+..+++|+++.
T Consensus 137 -~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~----~~~~---------~------------------~~L~~~l~d~~~~ 184 (201)
T 3ltj_A 137 -ERAVEPLIKALKDEDGWVRQSAADALGEIG----GERV---------R------------------AAMEKLAETGTGF 184 (201)
T ss_dssp -GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----SHHH---------H------------------HHHHHHHHHCCHH
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----chhH---------H------------------HHHHHHHhCCCHH
Confidence 346788999999999999999999998762 2111 2 5666777889999
Q ss_pred HHHHHHHHhHHH
Q psy14014 444 VRLAIIEYMPLL 455 (615)
Q Consensus 444 vr~~~~~~l~~l 455 (615)
+|..+.+++..+
T Consensus 185 vr~~A~~aL~~l 196 (201)
T 3ltj_A 185 ARKVAVNYLETH 196 (201)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 999999988876
No 52
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.57 E-value=2e-11 Score=135.26 Aligned_cols=555 Identities=11% Similarity=0.092 Sum_probs=321.3
Q ss_pred ccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcH--HHHHHHHHHhccccCC-----CC-Cc----c------
Q psy14014 25 EDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED--EVLLALAEQLGTFTPN-----VG-GP----E------ 86 (615)
Q Consensus 25 ~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~--~vr~~a~~~l~~l~~~-----~~-~~----~------ 86 (615)
+.+.+|......+..++....|+ .|+..++-+.++++.++ .......+.|..+.+. +. +. .
T Consensus 102 ~~~~IrnKL~~~la~l~~~~~p~-~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd 180 (980)
T 3ibv_A 102 EPAYISNAVQHLLTLLFLQLYPS-NWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKD 180 (980)
T ss_dssp SCTHHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhCcc-cCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHH
Confidence 45669999999999999988777 77778877776654321 2222233333311111 00 00 0
Q ss_pred ----h-----hhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHH-hhhHHHHHHHhhcCCCcchhhhHHhhhhhh
Q psy14014 87 ----Y-----VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDL-EAHFVPLVQRLASGDWFTSRTSACGLFSVC 156 (615)
Q Consensus 87 ----~-----~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~ 156 (615)
. .+..+.++.......++.++..+++++.....+.+...+ ...+++.+..+..+ ...|..|+.++..+
T Consensus 181 ~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei 258 (980)
T 3ibv_A 181 AIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEI 258 (980)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHH
Confidence 0 122233344433345678899999999999999887655 34578888777765 57899999988877
Q ss_pred ccCC-ChhhHHHHHHH------HHHHhC-CCChHHHHHHHHhHHHHHHHhchh----------------hhHhhhHHHHH
Q psy14014 157 YPRV-TAGVKAELRSH------FRNLCQ-DDTPMVRRAAAGKLGELAKVVEVD----------------YLKTDIIPMFV 212 (615)
Q Consensus 157 ~~~~-~~~~~~~l~~~------l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~~----------------~~~~~ll~~l~ 212 (615)
+..- .+..+..++.. +..+.. +.+.++++..++.+..++...-.- .....++|.+.
T Consensus 259 ~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL 338 (980)
T 3ibv_A 259 VNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLI 338 (980)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHH
T ss_pred HHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHH
Confidence 6554 33333333322 222222 577888888877776665432110 23446889999
Q ss_pred HhhccCchhHHHHHHHHHHHHHhhcCh--------h---hHHHhHHHHHHHhcC---CCC-------------hHHHHHH
Q psy14014 213 NLAQDEQDSVRLLAVEACVSIASLLSQ--------S---DVEQLVMPTLRQCSG---DTS-------------WRVRYMV 265 (615)
Q Consensus 213 ~~~~d~~~~vr~~a~~~l~~l~~~~~~--------~---~~~~~l~~~l~~~~~---d~~-------------~~vR~~~ 265 (615)
.++.+++++|-..++..|..+...... + .+.+.+++.+.+-+. |.+ ...|+..
T Consensus 339 ~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l 418 (980)
T 3ibv_A 339 RYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKL 418 (980)
T ss_dssp HHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHH
T ss_pred HHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHH
Confidence 999999999999888888877754321 1 223334444433221 111 1467666
Q ss_pred HHHHHHHHHHhCccchhh----hHHHHHHHhhc---CCcHHHHHHHHHHHHHHHhhccccchh----HHHHHhhHHHHHH
Q psy14014 266 ADKFTDLQKAVGPEITKT----DLVQAFQMLLK---DSEAEVRAAAANKVRDFCQNLDAYNQE----NIIMTYILPYVKD 334 (615)
Q Consensus 266 ~~~l~~l~~~~~~~~~~~----~l~~~l~~~l~---d~~~~vr~~a~~~l~~~~~~~~~~~~~----~~~~~~l~p~l~~ 334 (615)
. .+-.....++.+.... .+.+.+.+.+. +.+|..+++++.+++.+++.+...... ....+.+++.+..
T Consensus 419 ~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ 497 (980)
T 3ibv_A 419 K-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILAL 497 (980)
T ss_dssp H-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHH
T ss_pred H-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHH
Confidence 6 5555555566554444 45555555553 456899999999999999987642210 0123446677766
Q ss_pred hhC-----CCCHHHHHHHHHHHHhhchhhcc-hhhhhhhHHHHHH--hhcCCChhHHHHHHHhhhHhhhhhchhHHHHHH
Q psy14014 335 LVA-----DPNQHVKSALASVIMGLSPILGK-HNTVDHLLPLFLS--QLKDECPEVRLNIISNLDCVNEVIGIQQWRVRL 406 (615)
Q Consensus 335 ~~~-----d~~~~vR~~~~~~l~~l~~~~g~-~~~~~~l~p~l~~--~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 406 (615)
+++ ++++.||..+++.+++.++.+.. ..+.+.+++.+.. .+.+++..||..|..++..+++..+.. +.
T Consensus 498 ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~-L~--- 573 (980)
T 3ibv_A 498 VTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQ-VV--- 573 (980)
T ss_dssp HHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTT-CS---
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHH-hh---
Confidence 654 88999999999999999998864 3345556666666 666778899999999999998765431 10
Q ss_pred HHHhhhhhhhhccc----cchhhhhhhh---HHHHHhhhcCCchHHHHHHHHhHHHHhhhCh--H---hHHHHHHHHHHH
Q psy14014 407 AIIEYMPLLAGQLG----VEFFDEKLNA---LSIVELAEDSKWRVRLAIIEYMPLLAGQLGV--E---FFDEKLNALCMT 474 (615)
Q Consensus 407 ~i~~~l~~l~~~~~----~~~~~~~l~~---~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~--~---~~~~~l~~~l~~ 474 (615)
.+++.+...++ ...-+..-.. +...++.++....-+....++++.+....+. + .+.+.+++.++.
T Consensus 574 ---~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~ 650 (980)
T 3ibv_A 574 ---NYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIG 650 (980)
T ss_dssp ---SSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 11111111111 0000000000 0001111122233455678888888876652 1 123444444433
Q ss_pred h----cCCc----chH-HHHHHHHHHHHHHHHhChH------H--hhhchhHHHHhhhc--CCCchHHHHHHHHHHHHHh
Q psy14014 475 W----LVDH----VYA-IREAATLNLKKLVEQFGSE------W--AQSTVIPKVVAMSR--DQNYLHRMTCLFCINVLAE 535 (615)
Q Consensus 475 ~----l~d~----~~~-vR~~a~~~l~~l~~~~~~~------~--~~~~i~~~l~~~~~--d~~~~~R~~a~~~l~~l~~ 535 (615)
- +... ... .-...+.+++.+++.+... . ....+.+.++..+. ..+..+|..+..++.++..
T Consensus 651 ~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~ 730 (980)
T 3ibv_A 651 KANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIIN 730 (980)
T ss_dssp HHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 2 2211 111 1124566778888877421 0 11234555555454 4578899999999999998
Q ss_pred hhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhh---hHHhhHHHHHhh
Q psy14014 536 ACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN---VIQSQVKPALDK 591 (615)
Q Consensus 536 ~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~ 591 (615)
.+|.+. .+.+-+.+..++.+-...--......+++++..++.+ .+.+-+.|++.+
T Consensus 731 ~lg~~~-~p~lp~~i~~ll~~~~~~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~ 788 (980)
T 3ibv_A 731 VVGPDM-LPKVPQLISILLNSIDMNELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMR 788 (980)
T ss_dssp TTHHHH-TTTHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHH
T ss_pred HccHhH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887763 3333333333333322333345678888888777654 234444555544
No 53
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.56 E-value=4.1e-11 Score=135.78 Aligned_cols=500 Identities=10% Similarity=0.054 Sum_probs=304.0
Q ss_pred CCcchHHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcHHHHHHHHHHhccccCC-CC--Ccc
Q psy14014 10 DSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPN-VG--GPE 86 (615)
Q Consensus 10 ~~~~~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~vr~~a~~~l~~l~~~-~~--~~~ 86 (615)
-++..+..++..+.+++...|..|-+.|...-.. ++ .+..+..++.. +.+..+|..++..|...+.. .. .++
T Consensus 13 ~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~--p~-~~~~l~~iL~~--s~~~~vr~~aa~~Lk~~i~~~W~~l~~~ 87 (1049)
T 3m1i_C 13 LDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDN--PD-AWQKADQILQF--STNPQSKFIALSILDKLITRKWKLLPND 87 (1049)
T ss_dssp CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS--TT-GGGGHHHHHHH--CSCHHHHHHHHHHHHHHHHHTGGGSCHH
T ss_pred ccHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhC--ch-HHHHHHHHHhh--CCCHHHHHHHHHHHHHHHHhhCccCCHH
Confidence 3466788888888899988999999999877432 33 55555555533 23446999999888876531 11 111
Q ss_pred h----hhhchHHHhhhhcCc-----hhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhc
Q psy14014 87 Y----VHCLLPPLESLATVE-----ETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCY 157 (615)
Q Consensus 87 ~----~~~l~~~l~~l~~~~-----~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~ 157 (615)
. ...++..+.....++ +..||...+.++..++.+.-+ .-.+.+++.+..... .....+..+..++..+.
T Consensus 88 ~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~ 165 (1049)
T 3m1i_C 88 HRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-SSVNVCENNMIVLKLLS 165 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHc-cChHHHHHHHHHHHHHH
Confidence 1 233444444333232 378999999999999887433 234567777766664 23334555555555444
Q ss_pred cCC--------C--------hhh---HHHHHHHHHHHhCC-CChHHHHHHHHhHHHHHHHhchhh-hHhhhHHHHHHhhc
Q psy14014 158 PRV--------T--------AGV---KAELRSHFRNLCQD-DTPMVRRAAAGKLGELAKVVEVDY-LKTDIIPMFVNLAQ 216 (615)
Q Consensus 158 ~~~--------~--------~~~---~~~l~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~~~-~~~~ll~~l~~~~~ 216 (615)
..+ . +.+ ...+++.+..++++ .+..++..+++++..+....+... ....+++.+.+.+.
T Consensus 166 eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l 245 (1049)
T 3m1i_C 166 EEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM 245 (1049)
T ss_dssp HHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH
T ss_pred HHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC
Confidence 221 1 111 22344445555443 467899999999988776554322 23456666663222
Q ss_pred cCchhHHHHHHHHHHHHHhhc-Chh--hHHH-------hHHHHHHH--------------hcCCCChHHHHHHHHHHHHH
Q psy14014 217 DEQDSVRLLAVEACVSIASLL-SQS--DVEQ-------LVMPTLRQ--------------CSGDTSWRVRYMVADKFTDL 272 (615)
Q Consensus 217 d~~~~vr~~a~~~l~~l~~~~-~~~--~~~~-------~l~~~l~~--------------~~~d~~~~vR~~~~~~l~~l 272 (615)
.++.+|..|++++..+...- ++. .+.. .++..+.. ...|.++.....+++.+..+
T Consensus 246 -~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~ 324 (1049)
T 3m1i_C 246 -TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTY 324 (1049)
T ss_dssp -HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHH
T ss_pred -CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 36789999999999888662 221 0111 12222211 12344566666777777665
Q ss_pred HHHhCcc--------chhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhc--cccc--hhHHHHHhhHHHHHHhhC---
Q psy14014 273 QKAVGPE--------ITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNL--DAYN--QENIIMTYILPYVKDLVA--- 337 (615)
Q Consensus 273 ~~~~~~~--------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~--~~~~--~~~~~~~~l~p~l~~~~~--- 337 (615)
+..+... .....+++.+.....+++.+|+..++..+..++..+ .+.. ....+...+++.+...+.
T Consensus 325 ~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~e 404 (1049)
T 3m1i_C 325 LARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPE 404 (1049)
T ss_dssp HHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCT
T ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 5432110 012345677777777888899999998888887743 1111 112345555665554331
Q ss_pred -------CC------------CHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcC--CChhHHHHHHHhhhHhhhh
Q psy14014 338 -------DP------------NQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKD--ECPEVRLNIISNLDCVNEV 396 (615)
Q Consensus 338 -------d~------------~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d--~~~~vr~~a~~~l~~l~~~ 396 (615)
|+ ++..|.++...|..++...+ ....+.+.+.+.+.+.. .+|..+.+++.+++.+.+.
T Consensus 405 d~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~-~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~ 483 (1049)
T 3m1i_C 405 EVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNV-IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGT 483 (1049)
T ss_dssp TCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTS
T ss_pred ceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcc
Confidence 10 12457777788888875443 44556677777777753 5789999999999988766
Q ss_pred hchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhh-----hcCCchHHHHHHHHhHHHHhhhCh-HhHHHHHHH
Q psy14014 397 IGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELA-----EDSKWRVRLAIIEYMPLLAGQLGV-EFFDEKLNA 470 (615)
Q Consensus 397 ~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~-----~~~~~~vr~~~~~~l~~l~~~~~~-~~~~~~l~~ 470 (615)
++...-.. ++|.+. +.+..+. +++...+|..++..++.+++.+.. ..+...+++
T Consensus 484 ~~~~~e~~------~l~~v~--------------~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~ 543 (1049)
T 3m1i_C 484 MSEDTEKR------FVVTVI--------------KDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVIL 543 (1049)
T ss_dssp SCHHHHHH------HHHHHH--------------HHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHH
T ss_pred cCchhhHH------HHHHHH--------------HHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 54331111 011111 1222221 134455666788888887765433 234566788
Q ss_pred HHHHhcCCcchHHHHHHHHHHHHHHHHhChHHh----------hhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhC
Q psy14014 471 LCMTWLVDHVYAIREAATLNLKKLVEQFGSEWA----------QSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACG 538 (615)
Q Consensus 471 ~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~----------~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~ 538 (615)
.++..+.|++..||..|+.++..++..++.... .+.++..+..+..+-....+.....+++.++...+
T Consensus 544 ~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 544 KLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence 888889999999999999999999998876532 23455555555666566667778899999987776
No 54
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.54 E-value=7.9e-11 Score=125.30 Aligned_cols=272 Identities=12% Similarity=0.038 Sum_probs=172.6
Q ss_pred hHHHHHHHhhc---CCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCC--------HHHHHHHHHHHH
Q psy14014 284 DLVQAFQMLLK---DSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPN--------QHVKSALASVIM 352 (615)
Q Consensus 284 ~l~~~l~~~l~---d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~--------~~vR~~~~~~l~ 352 (615)
+.+..+...+. ..++.+|..|+.+++-+...... ..+..|.+.+.+.+ +.+|..++..|+
T Consensus 392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~---------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR---------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH---------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH---------HHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 34555556665 56789999999999987765432 13444555444433 789999999998
Q ss_pred hhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHH
Q psy14014 353 GLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALS 432 (615)
Q Consensus 353 ~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~ 432 (615)
.+.-..+.+ .+.+.+.+.+.+++..++..|.-+++.+.-..+....-+ ..
T Consensus 463 la~~GS~~e----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~--------------------------~L 512 (963)
T 4ady_A 463 LAAMGSANI----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIH--------------------------DM 512 (963)
T ss_dssp HHSTTCCCH----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHH--------------------------HH
T ss_pred HHhcCCCCH----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHH--------------------------HH
Confidence 765444443 456667777777677778788877776543333322111 11
Q ss_pred HHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHH
Q psy14014 433 IVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVV 512 (615)
Q Consensus 433 i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~ 512 (615)
+..+.++.+..+|..++..|+.+ .+|.+...+.++..+ ..+.++.+|..++.+++.-....|.. ..+..|+
T Consensus 513 L~~~~e~~~e~vrR~aalgLGll--~~g~~e~~~~li~~L---~~~~dp~vRygaa~alglAyaGTGn~----~aIq~LL 583 (963)
T 4ady_A 513 FTYSQETQHGNITRGLAVGLALI--NYGRQELADDLITKM---LASDESLLRYGGAFTIALAYAGTGNN----SAVKRLL 583 (963)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHH--TTTCGGGGHHHHHHH---HHCSCHHHHHHHHHHHHHHTTTSCCH----HHHHHHH
T ss_pred HHHHhccCcHHHHHHHHHHHHhh--hCCChHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHhcCCCCH----HHHHHHH
Confidence 22223455667888888888766 445544334433332 23677888888888776655444443 3344444
Q ss_pred h-hhcCCCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHHHHHhh
Q psy14014 513 A-MSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDK 591 (615)
Q Consensus 513 ~-~~~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ 591 (615)
. +..|.+..+|..|+.+||.+... .. +.+...+..+..+.++.||..++.+|+.++...+ ...+...|..
T Consensus 584 ~~~~~d~~d~VRraAViaLGlI~~g--~~---e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~----~~~aid~L~~ 654 (963)
T 4ady_A 584 HVAVSDSNDDVRRAAVIALGFVLLR--DY---TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG----LQSAIDVLDP 654 (963)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHTSS--SC---SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC----CHHHHHHHHH
T ss_pred HHhccCCcHHHHHHHHHHHHhhccC--CH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC----cHHHHHHHHH
Confidence 4 34577778898888888887522 11 2233333345677888999999999988864333 2345667788
Q ss_pred hcCCCCccHHHHHHHHHHHHh
Q psy14014 592 LNGDTDVDVKYFAQEAISSIA 612 (615)
Q Consensus 592 l~~d~d~~v~~~a~~a~~~~~ 612 (615)
+.+|+|.+||+.|..|++.+.
T Consensus 655 L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 655 LTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp HHTCSSHHHHHHHHHHHHHHS
T ss_pred HccCCCHHHHHHHHHHHHHHh
Confidence 888999999999999888764
No 55
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.54 E-value=7.4e-11 Score=130.80 Aligned_cols=436 Identities=10% Similarity=0.088 Sum_probs=254.4
Q ss_pred cchhhhHHhhhhhhccCCChh----hH----HHHHHHHHHHh-CCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHH
Q psy14014 143 FTSRTSACGLFSVCYPRVTAG----VK----AELRSHFRNLC-QDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVN 213 (615)
Q Consensus 143 ~~~r~~a~~~l~~~~~~~~~~----~~----~~l~~~l~~l~-~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~ 213 (615)
..+|-.|+.++......++++ .+ +.+++.+.... .+..+.+|...+.++..+++...++ .|+.+++-+.+
T Consensus 57 ~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~-~Wp~~i~~l~~ 135 (980)
T 3ibv_A 57 PSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS-NWNDFFASLQG 135 (980)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc-cCchHHHHHHH
Confidence 455655555544333333333 33 44444444421 1346789999999999999876544 47778887777
Q ss_pred hhccCch-hHHHHHHHHHHHHHhhcCh-----------------hhH--------HHhHHHHHHHhcCCCChHHHHHHHH
Q psy14014 214 LAQDEQD-SVRLLAVEACVSIASLLSQ-----------------SDV--------EQLVMPTLRQCSGDTSWRVRYMVAD 267 (615)
Q Consensus 214 ~~~d~~~-~vr~~a~~~l~~l~~~~~~-----------------~~~--------~~~l~~~l~~~~~d~~~~vR~~~~~ 267 (615)
+++.++. ..-...+..+..+.+-+.. +.. .+.++..+..+....+..++..+.+
T Consensus 136 ~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~ 215 (980)
T 3ibv_A 136 VIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQ 215 (980)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 7764433 2333445555544444321 000 1122233333333356778888888
Q ss_pred HHHHHHHHhCccch-hhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHh--hHHHHHHhhC-CCCHHH
Q psy14014 268 KFTDLQKAVGPEIT-KTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTY--ILPYVKDLVA-DPNQHV 343 (615)
Q Consensus 268 ~l~~l~~~~~~~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~--l~p~l~~~~~-d~~~~v 343 (615)
+++....+.+.... ...+++.+.+++.+ +++|.+|+.+|..++..-........+... +-+.+..+.. +.+.++
T Consensus 216 ~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~ 293 (980)
T 3ibv_A 216 VYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNF 293 (980)
T ss_dssp HHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHH
T ss_pred HHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHH
Confidence 88888776554322 24788888888877 789999999999988753322111111111 1122222222 466777
Q ss_pred HHHHHHHHHhhchhh-----cc-----------hhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhH----HH
Q psy14014 344 KSALASVIMGLSPIL-----GK-----------HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ----WR 403 (615)
Q Consensus 344 R~~~~~~l~~l~~~~-----g~-----------~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~ 403 (615)
+...++.+..+++.+ .. ......++|.++.++.+++++|-..++..+..+........ +.
T Consensus 294 ~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~ 373 (980)
T 3ibv_A 294 DEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELS 373 (980)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhcccccccc
Confidence 766665554443321 11 02344678999999999889998888888777664432100 11
Q ss_pred HHH--HHHhhhhhhhhccccchhhhhhhhHHHHHhhhc---C----CchHHHHHHHHhHHHHhhhChHhHHH----HHHH
Q psy14014 404 VRL--AIIEYMPLLAGQLGVEFFDEKLNALSIVELAED---S----KWRVRLAIIEYMPLLAGQLGVEFFDE----KLNA 470 (615)
Q Consensus 404 ~~~--~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~---~----~~~vr~~~~~~l~~l~~~~~~~~~~~----~l~~ 470 (615)
... .+...++.+..++..+ +. .++..+ + --..|.... .+-..+..+|++.+.+ .+.+
T Consensus 374 ~~~~~~l~~Ll~~li~k~~yp---~d------~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~ 443 (980)
T 3ibv_A 374 ASLKEFLKSLLEAIIKKMKYD---ES------QEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITS 443 (980)
T ss_dssp HHHHHHHHHHHHHHHHTTSCC---TT------CCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCC---Cc------cccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHH
Confidence 100 0111122222222110 00 000000 0 012565555 5556666778777666 5555
Q ss_pred HHHHhcC---CcchHHHHHHHHHHHHHHHHhChHH--------hhhchhHHHHhhhc-----CCCchHHHHHHHHHHHHH
Q psy14014 471 LCMTWLV---DHVYAIREAATLNLKKLVEQFGSEW--------AQSTVIPKVVAMSR-----DQNYLHRMTCLFCINVLA 534 (615)
Q Consensus 471 ~l~~~l~---d~~~~vR~~a~~~l~~l~~~~~~~~--------~~~~i~~~l~~~~~-----d~~~~~R~~a~~~l~~l~ 534 (615)
.+.+.+. +.+|..+++++.+++.+++.+.... ..+.+++.+..+++ ++++.+|..++.++|+..
T Consensus 444 ~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys 523 (980)
T 3ibv_A 444 SLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYA 523 (980)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTG
T ss_pred HHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHH
Confidence 5555553 4679999999999999998765321 11235555555544 789999999999999999
Q ss_pred hhhCh-hhHHHhhHHHHHh--hCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHHHHHhhh
Q psy14014 535 EACGP-TVTANFLLPTVLN--MAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 592 (615)
Q Consensus 535 ~~~~~-~~~~~~i~~~l~~--~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l 592 (615)
+.+.. ..+.+.+++.+.. .+.++++.||..|+.++.++++.+++. +.+.+.+++..+
T Consensus 524 ~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~-L~~~~~~il~~l 583 (980)
T 3ibv_A 524 SFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQ-VVNYTESSLAML 583 (980)
T ss_dssp GGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTT-CSSSHHHHHHHT
T ss_pred HHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHH-hhhHHHHHHHHH
Confidence 88653 2345566777777 777899999999999999999887643 234555555554
No 56
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.53 E-value=9.8e-11 Score=122.08 Aligned_cols=478 Identities=11% Similarity=0.059 Sum_probs=295.1
Q ss_pred HHhcHHHHHHHhCcchhhccchhhhhhhcC---CcHHHHHHHHHHhccccCCCCCcchhhhchHHHhhhhcCch----hH
Q psy14014 33 SIKKLSTIALALGQERTRGELIPFLTETIY---DEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEE----TV 105 (615)
Q Consensus 33 a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~---~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~----~~ 105 (615)
.+..+..+..+++. .+++ +.|+.+.+. ++.+||..+.-.+.++.+.- ..++-+.+...+..++-+.+ ..
T Consensus 152 ~l~~~~~l~~~~~~--~~~~-~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~-~~~~~~~~~~~~~~l~~e~~~~~~~~ 227 (778)
T 3opb_A 152 LLSIILQLLNKFKY--NFKE-VRFLVKELILRISEDEVKSMMLIIFAELQSSF-QKDFDKAVVDFMSSLIVEAEIDVGND 227 (778)
T ss_dssp HHHHHHHHHHHSCC--CSTT-TTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHcCc--cccc-hhhHHHHhccccChhhhHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHhhccCCCCc
Confidence 34444444455543 3555 666655332 34468887776666655422 13444556666665652221 22
Q ss_pred HHHHHHHHHHHHHhhcCh---hH-HhhhHHHHHHHhhcC-CCcchhhhHHhhhhhhccCCC--hhhHHHHHHHHHHHhCC
Q psy14014 106 VRDKAVESLRLISAQHSP---HD-LEAHFVPLVQRLASG-DWFTSRTSACGLFSVCYPRVT--AGVKAELRSHFRNLCQD 178 (615)
Q Consensus 106 vr~~a~~~l~~l~~~~~~---~~-~~~~~l~~l~~l~~~-~~~~~r~~a~~~l~~~~~~~~--~~~~~~l~~~l~~l~~d 178 (615)
-...++.++..+....+. .. +.+.+.|.+.+.... .......++..++...|..-. +.+.++..+.+..++++
T Consensus 228 ~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~ 307 (778)
T 3opb_A 228 PLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV 307 (778)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc
Confidence 233444444444444432 11 122345555544433 233344556667766554321 23345556666777654
Q ss_pred CChHHHHHHHHhHHHHHHHhch-hhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcCh-hhH--HHhHHHHHHHhc
Q psy14014 179 DTPMVRRAAAGKLGELAKVVEV-DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ-SDV--EQLVMPTLRQCS 254 (615)
Q Consensus 179 ~~~~vR~~a~~~l~~l~~~~~~-~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~~~--~~~l~~~l~~~~ 254 (615)
..+|..++-.|..+...-+. .....++.+.+..++.+++...|+.|++.|..+.-.-.- +.+ .+.+++.+.+++
T Consensus 308 --~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~ll 385 (778)
T 3opb_A 308 --EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMI 385 (778)
T ss_dssp --GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHH
Confidence 57888888888887664322 223456888888888876655699999999887432211 111 123455566666
Q ss_pred CC-CChHHHHHHHHHHHHHHHHhCcc-----------------------------------------chhhhHHHHHHHh
Q psy14014 255 GD-TSWRVRYMVADKFTDLQKAVGPE-----------------------------------------ITKTDLVQAFQML 292 (615)
Q Consensus 255 ~d-~~~~vR~~~~~~l~~l~~~~~~~-----------------------------------------~~~~~l~~~l~~~ 292 (615)
++ .+..+-+.++..|.++....... +....++|.|..+
T Consensus 386 k~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~L 465 (778)
T 3opb_A 386 KSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKRE 465 (778)
T ss_dssp TTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHH
T ss_pred hCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHH
Confidence 54 44456677777776665432210 0112478999999
Q ss_pred hcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHH---HHHHHHHHHHhhchhhcchhhh-----
Q psy14014 293 LKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQH---VKSALASVIMGLSPILGKHNTV----- 364 (615)
Q Consensus 293 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~---vR~~~~~~l~~l~~~~g~~~~~----- 364 (615)
++...+.+|..|+++|..+... ++.+.....+..+|.|..++.+.... +|..++.+|.++.....+....
T Consensus 466 l~S~s~~~re~A~~aL~nLS~d--~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~ 543 (778)
T 3opb_A 466 MHNLSPNCKQQVVRIIYNITRS--KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSA 543 (778)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTS--GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCS
T ss_pred HcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCcc
Confidence 9999999999999999999764 55555556667888888888776544 8999999999987543322211
Q ss_pred hhhHHHHHHhhcC-CCh-------------hHHHHHHHhhhHhhhhhch--hHHHHHHHH-Hhhhhhhhhccccchhhhh
Q psy14014 365 DHLLPLFLSQLKD-ECP-------------EVRLNIISNLDCVNEVIGI--QQWRVRLAI-IEYMPLLAGQLGVEFFDEK 427 (615)
Q Consensus 365 ~~l~p~l~~~l~d-~~~-------------~vr~~a~~~l~~l~~~~~~--~~~~~~~~i-~~~l~~l~~~~~~~~~~~~ 427 (615)
-..+|.+.++|.. ... --+..|+.+|..+...-+. +..++++.- ..++
T Consensus 544 ~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~--------------- 608 (778)
T 3opb_A 544 LNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYW--------------- 608 (778)
T ss_dssp TTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHH---------------
T ss_pred ccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHH---------------
Confidence 1568899999872 221 1267888888888765422 223332200 0112
Q ss_pred hhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhC---hHhHH---H---HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHh
Q psy14014 428 LNALSIVELAEDSKWRVRLAIIEYMPLLAGQLG---VEFFD---E---KLNALCMTWLVDHVYAIREAATLNLKKLVEQF 498 (615)
Q Consensus 428 l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~---~~~~~---~---~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~ 498 (615)
|.+.+++.+.+..+|.++++.+..++..-. .+++. + .-++.+..++...+..+|.+|..++..+....
T Consensus 609 ---~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~ 685 (778)
T 3opb_A 609 ---STIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTI 685 (778)
T ss_dssp ---HHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 678888888899999999999999986442 23321 1 13677889999899999999999999986543
Q ss_pred Ch--HHhh--hchhHHHHhhhcC--CCchHHHHHHHHHHHHHhh
Q psy14014 499 GS--EWAQ--STVIPKVVAMSRD--QNYLHRMTCLFCINVLAEA 536 (615)
Q Consensus 499 ~~--~~~~--~~i~~~l~~~~~d--~~~~~R~~a~~~l~~l~~~ 536 (615)
.. .... ...++.+.+++++ ++..+|..++.++.++++.
T Consensus 686 ~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 686 PLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 22 1111 2467778888888 8899999999999999873
No 57
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.52 E-value=1.7e-12 Score=121.84 Aligned_cols=228 Identities=16% Similarity=0.129 Sum_probs=176.6
Q ss_pred HHHHHHHhCCCChHHHHHHHHhHHHHHHHhch---hhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcCh---hhH
Q psy14014 169 RSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV---DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ---SDV 242 (615)
Q Consensus 169 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~ 242 (615)
++.+..+++++++.+|..++.++..++...+. .......+|.+.+++++++..+|..|..++..++..-+. ...
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 45667888888899999999999999865431 223457899999999999999999999999998764222 112
Q ss_pred HHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC---ccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccc
Q psy14014 243 EQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVG---PEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYN 319 (615)
Q Consensus 243 ~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 319 (615)
....+|.+..++.++++.+|..++.+++.++.... ........+|.+.+++++.++++|..++.+|..++..-+ ..
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~-~~ 162 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD-EA 162 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-HH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH-HH
Confidence 23578999999999999999999999999884211 111223679999999999999999999999999886422 11
Q ss_pred hhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc---hhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhh
Q psy14014 320 QENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK---HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV 396 (615)
Q Consensus 320 ~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~---~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~ 396 (615)
.........+|.+..++.++++.+|..++.++..++..-.. .......+|.+.++++++++.+|..|+.+|..+...
T Consensus 163 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence 12234456889999999999999999999999999863111 111235789999999999999999999999888654
Q ss_pred h
Q psy14014 397 I 397 (615)
Q Consensus 397 ~ 397 (615)
.
T Consensus 243 ~ 243 (252)
T 4hxt_A 243 G 243 (252)
T ss_dssp C
T ss_pred C
Confidence 3
No 58
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.52 E-value=2.9e-11 Score=124.18 Aligned_cols=347 Identities=16% Similarity=0.131 Sum_probs=219.0
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHhC---ccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHH
Q psy14014 247 MPTLRQCSGDTSWRVRYMVADKFTDLQKAVG---PEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENI 323 (615)
Q Consensus 247 ~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 323 (615)
+|.+.+++..++..++..++..+..++..-. ..+.....+|.|.+++++.+++++..|+.+|..++..-..+.+...
T Consensus 50 i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I 129 (584)
T 3l6x_A 50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAI 129 (584)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 4444444444444454444444444442100 0011235788999999999999999999999988763223333334
Q ss_pred HHHhhHHHHHHhhCC-CCHHHHHHHHHHHHhhchhhc-chhhhhhhHHHHHHhhc------------------CCChhHH
Q psy14014 324 IMTYILPYVKDLVAD-PNQHVKSALASVIMGLSPILG-KHNTVDHLLPLFLSQLK------------------DECPEVR 383 (615)
Q Consensus 324 ~~~~l~p~l~~~~~d-~~~~vR~~~~~~l~~l~~~~g-~~~~~~~l~p~l~~~l~------------------d~~~~vr 383 (615)
.....+|.|.+++.+ .+..++..++.+|..++..-. +..+....+|.|.+++. ..+..|+
T Consensus 130 ~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~ 209 (584)
T 3l6x_A 130 KNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209 (584)
T ss_dssp HHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHH
T ss_pred HHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHH
Confidence 445678888888886 678999999999999976321 12233445777777651 1246899
Q ss_pred HHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhh------cCCchHHHHHHHHhHHHHh
Q psy14014 384 LNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAE------DSKWRVRLAIIEYMPLLAG 457 (615)
Q Consensus 384 ~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~------~~~~~vr~~~~~~l~~l~~ 457 (615)
..|..+|..+..... ..++.+ .+. -| +. +.+...++ +.+.+..+.++.+|..++.
T Consensus 210 ~nAa~~L~NLs~~~~--~~R~~i--~~~-------~G-------li-~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~ 270 (584)
T 3l6x_A 210 TNTAGCLRNVSSERS--EARRKL--REC-------DG-------LV-DALIFIVQAEIGQKDSDSKLVENCVCLLRNLSY 270 (584)
T ss_dssp HHHHHHHHHHTSSCH--HHHHHH--HHS-------TT-------HH-HHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCH--HHHHHH--HHc-------CC-------cH-HHHHHHHHHhhcccCccHHHHHHHHHHHHHhhc
Confidence 999998887754221 111111 110 00 00 12222222 2345566666666655543
Q ss_pred hh---------------------------ChHh-HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHhCh---H---H
Q psy14014 458 QL---------------------------GVEF-FDEKLNALCMTWLV-DHVYAIREAATLNLKKLVEQFGS---E---W 502 (615)
Q Consensus 458 ~~---------------------------~~~~-~~~~l~~~l~~~l~-d~~~~vR~~a~~~l~~l~~~~~~---~---~ 502 (615)
.. |.++ +....++.++.++. ..+..+++.|+.+|..++..-+. . .
T Consensus 271 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~ 350 (584)
T 3l6x_A 271 QVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSA 350 (584)
T ss_dssp THHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHH
T ss_pred cccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHH
Confidence 21 1111 22456777888885 45788999999999999753211 1 1
Q ss_pred -hhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhCh-hhHHHhhHHHHHhhCCCC--------CchHHHHHHHHHHHH
Q psy14014 503 -AQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGP-TVTANFLLPTVLNMAGDN--------VANVRFNVAKTLQKI 572 (615)
Q Consensus 503 -~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~-~~~~~~i~~~l~~~~~D~--------~~~vr~~a~~~l~~l 572 (615)
.....+|.|.+++.+++..++..++.+|++++..... ..+....+|.|..++.+. ..+++..++.+|.++
T Consensus 351 v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL 430 (584)
T 3l6x_A 351 LRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEV 430 (584)
T ss_dssp HTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHH
Confidence 1134699999999999999999999999999876443 334567899999988765 357888999999998
Q ss_pred hHhhh---hhhHHhhHHHHHhhhcCCC--CccHHHHHHHHHHHHh
Q psy14014 573 GPILE---TNVIQSQVKPALDKLNGDT--DVDVKYFAQEAISSIA 612 (615)
Q Consensus 573 ~~~~~---~~~~~~~~~~~l~~l~~d~--d~~v~~~a~~a~~~~~ 612 (615)
....+ .........|.+..|+.+. .+.++..|..++..+.
T Consensus 431 ~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~ 475 (584)
T 3l6x_A 431 IAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIW 475 (584)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 74422 1223344556666655443 7889999999988775
No 59
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.50 E-value=6.1e-10 Score=116.19 Aligned_cols=483 Identities=9% Similarity=0.045 Sum_probs=290.7
Q ss_pred CchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhh----cCCCcchhhhHHhhhhhhccCCChhh-----HHHHHHH
Q psy14014 101 VEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLA----SGDWFTSRTSACGLFSVCYPRVTAGV-----KAELRSH 171 (615)
Q Consensus 101 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~----~~~~~~~r~~a~~~l~~~~~~~~~~~-----~~~l~~~ 171 (615)
.++++||..++-++.++.+..+ +.....+..++..+. .+-....-..+...+..+++.+++-. .+.+.+.
T Consensus 181 ~~~~~~~~~~l~i~~~~~~~~~-~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~ 259 (778)
T 3opb_A 181 ISEDEVKSMMLIIFAELQSSFQ-KDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKL 259 (778)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHH
T ss_pred cChhhhHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHH
Confidence 4567899999999988887766 455556666666544 22223344455666666666664321 1234445
Q ss_pred HHHHh-CCCChHHHHHHHHhHHHHHHHh-chhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh-hHHHhHHH
Q psy14014 172 FRNLC-QDDTPMVRRAAAGKLGELAKVV-EVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS-DVEQLVMP 248 (615)
Q Consensus 172 l~~l~-~d~~~~vR~~a~~~l~~l~~~~-~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~ 248 (615)
+.... +.++..+...+++.+...|-.- ..+......+|.+.+.+++ ..+|..|.-+|..+...-+.. .-...+.+
T Consensus 260 l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La~ 337 (778)
T 3opb_A 260 FKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLSE 337 (778)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHHH
Confidence 55443 4566777777777766654211 1233345566777777765 578998888888876544321 22345788
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHh--Cccc-hhhhHHHHHHHhhcC-CcHHHHHHHHHHHHHHHhhccccchhHHH
Q psy14014 249 TLRQCSGDTSWRVRYMVADKFTDLQKAV--GPEI-TKTDLVQAFQMLLKD-SEAEVRAAAANKVRDFCQNLDAYNQENII 324 (615)
Q Consensus 249 ~l~~~~~d~~~~vR~~~~~~l~~l~~~~--~~~~-~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 324 (615)
.+.+.+.+++...|..+++.|..+...- .... ....++..+.+++++ .+..+...++..+..+....+.......-
T Consensus 338 ~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~ 417 (778)
T 3opb_A 338 IFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXX 417 (778)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC-
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhh
Confidence 8888888777666888998888775311 0111 123568888888885 66778888888888888765432111001
Q ss_pred HHhhHHHHHHhh----CCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchh
Q psy14014 325 MTYILPYVKDLV----ADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ 400 (615)
Q Consensus 325 ~~~l~p~l~~~~----~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 400 (615)
...+.++...-. .+.++.-... .....-...+ ....++|.+..++...++.+|..+++++..+...-
T Consensus 418 l~~Lk~~A~~~~p~~~~~d~~~~~~~--~v~~~~~~~l----~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~--- 488 (778)
T 3opb_A 418 XXXXXXXXXXXXPAADKVGAEKAAKE--DILLFNEKYI----LRTELISFLKREMHNLSPNCKQQVVRIIYNITRSK--- 488 (778)
T ss_dssp -----------------CCTHHHHHH--HHHHHHHHHT----TTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSG---
T ss_pred hhhhhhhccccCcccCcccccccchH--HHHHHHHHHH----HHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH---
Confidence 122222211100 0001000000 0000000011 11247899999999999999999999998886432
Q ss_pred HHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCc---hHHHHHHHHhHHHHhhhChHhHH-----HHHHHHH
Q psy14014 401 QWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKW---RVRLAIIEYMPLLAGQLGVEFFD-----EKLNALC 472 (615)
Q Consensus 401 ~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~---~vr~~~~~~l~~l~~~~~~~~~~-----~~l~~~l 472 (615)
..+..+.--..+ +.+..++.+... +.|..|+.+|..+.....+.... ...+|.+
T Consensus 489 ~~R~~lvqqGal------------------~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pL 550 (778)
T 3opb_A 489 NFIPQLAQQGAV------------------KIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFL 550 (778)
T ss_dssp GGHHHHHHTTHH------------------HHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHH
T ss_pred HHHHHHHHCCCH------------------HHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHH
Confidence 112211000011 455666655433 38999999999987544332210 1467888
Q ss_pred HHhcCC-cch-------------HHHHHHHHHHHHHHHHhCh---HH---hhh--chhHHHHhhhcCCCchHHHHHHHHH
Q psy14014 473 MTWLVD-HVY-------------AIREAATLNLKKLVEQFGS---EW---AQS--TVIPKVVAMSRDQNYLHRMTCLFCI 530 (615)
Q Consensus 473 ~~~l~d-~~~-------------~vR~~a~~~l~~l~~~~~~---~~---~~~--~i~~~l~~~~~d~~~~~R~~a~~~l 530 (615)
+.+|.. +.. ..+..|+.+|.+++..-+. +. ... ..+|.+.+++.+.+..+|.+|++++
T Consensus 551 v~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI 630 (778)
T 3opb_A 551 FELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELI 630 (778)
T ss_dssp HHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred HHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 898872 221 2377899999999875321 11 222 4789999999999999999999999
Q ss_pred HHHHhhhCh---hhHH---Hh---hHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhh--hhH-H-hhHHHHHhhhcCC--
Q psy14014 531 NVLAEACGP---TVTA---NF---LLPTVLNMAGDNVANVRFNVAKTLQKIGPILET--NVI-Q-SQVKPALDKLNGD-- 595 (615)
Q Consensus 531 ~~l~~~~~~---~~~~---~~---i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~--~~~-~-~~~~~~l~~l~~d-- 595 (615)
.+++..-.. .++. +. -++.|..++...+..+|.+|+.+|+.+....+. ... . ....+.+..++.+
T Consensus 631 ~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~ 710 (778)
T 3opb_A 631 SNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQI 710 (778)
T ss_dssp HHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccC
Confidence 999854321 2221 11 277889999999999999999999998643331 111 1 1233333334445
Q ss_pred CCccHHHHHHHHHHHHhh
Q psy14014 596 TDVDVKYFAQEAISSIAD 613 (615)
Q Consensus 596 ~d~~v~~~a~~a~~~~~~ 613 (615)
+|.+++..+..++..+++
T Consensus 711 ~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 711 DDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp TCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 799999999999999886
No 60
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.50 E-value=7.3e-13 Score=122.70 Aligned_cols=199 Identities=11% Similarity=0.124 Sum_probs=158.1
Q ss_pred hhhHHHHHHhhccCchhHHHHHHHHHHH-HHhhcCh----hhHHHhHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHhC-
Q psy14014 205 TDIIPMFVNLAQDEQDSVRLLAVEACVS-IASLLSQ----SDVEQLVMPTLRQCS-GDTSWRVRYMVADKFTDLQKAVG- 277 (615)
Q Consensus 205 ~~ll~~l~~~~~d~~~~vr~~a~~~l~~-l~~~~~~----~~~~~~l~~~l~~~~-~d~~~~vR~~~~~~l~~l~~~~~- 277 (615)
+.+-+-|.+.+++.+|..|+.|+..+.. +.+..+. ..-...++..+.+.+ +|++..||..++++++.++..++
T Consensus 15 ~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~ 94 (249)
T 2qk1_A 15 DKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT 94 (249)
T ss_dssp GGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT
T ss_pred hhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 3444456667788889999998888888 7654321 111235678888888 79999999999999999999887
Q ss_pred ccch---hhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhh
Q psy14014 278 PEIT---KTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGL 354 (615)
Q Consensus 278 ~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l 354 (615)
+... ...++|.++..++|..+.||.++..++..++..+++.... .+++.+++.+...+++++|.+|..++.++..+
T Consensus 95 ~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~-~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~ 173 (249)
T 2qk1_A 95 PGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASS-GRNEDMLKDILEHMKHKTPQIRMECTQLFNAS 173 (249)
T ss_dssp TTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTT-CTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccC-CcHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 5543 3468999999999999999999999999999987542210 01456888888889999999999999999999
Q ss_pred chhhcc--h---hhh-hhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHH
Q psy14014 355 SPILGK--H---NTV-DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRV 404 (615)
Q Consensus 355 ~~~~g~--~---~~~-~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 404 (615)
....+. . .+. +.++|.+.+++.|.+.+||..|..+++.+...+|...+..
T Consensus 174 ~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p 229 (249)
T 2qk1_A 174 MKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVK 229 (249)
T ss_dssp HHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHH
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 887663 2 346 7899999999999999999999999999999998765443
No 61
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.49 E-value=1.1e-11 Score=126.60 Aligned_cols=343 Identities=13% Similarity=0.106 Sum_probs=213.9
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHHhCc---cchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHH
Q psy14014 248 PTLRQCSGDTSWRVRYMVADKFTDLQKAVGP---EITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENII 324 (615)
Q Consensus 248 ~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 324 (615)
|.+..++..+++.++..++.++..++..-.. .......+|.+.+++++.+++++..|+.+|..++.. .++.+....
T Consensus 5 ~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~-~~~~k~~i~ 83 (457)
T 1xm9_A 5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR-STTNKLETR 83 (457)
T ss_dssp HHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS-CHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence 3344444444555555555555554421110 011235788899999999999999999999988763 123333333
Q ss_pred HHhhHHHHHHhhC-CCCHHHHHHHHHHHHhhchhhc-chhhhhhhHHHHHHhhc--------CC--------ChhHHHHH
Q psy14014 325 MTYILPYVKDLVA-DPNQHVKSALASVIMGLSPILG-KHNTVDHLLPLFLSQLK--------DE--------CPEVRLNI 386 (615)
Q Consensus 325 ~~~l~p~l~~~~~-d~~~~vR~~~~~~l~~l~~~~g-~~~~~~~l~p~l~~~l~--------d~--------~~~vr~~a 386 (615)
....+|.|.+++. +.++.++..++++|..++..-. +.......+|.+.+++. +. +.+++..|
T Consensus 84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a 163 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNA 163 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHH
T ss_pred HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHH
Confidence 4567899999998 8899999999999999986511 12233367899999882 22 35666799
Q ss_pred HHhhhHhhhhhchhHHHHHHHHH-hhhhhhhhccccchhhhhhhhHHHHHhhhc------CCchHHHHHHHHhHHHHhh-
Q psy14014 387 ISNLDCVNEVIGIQQWRVRLAII-EYMPLLAGQLGVEFFDEKLNALSIVELAED------SKWRVRLAIIEYMPLLAGQ- 458 (615)
Q Consensus 387 ~~~l~~l~~~~~~~~~~~~~~i~-~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~------~~~~vr~~~~~~l~~l~~~- 458 (615)
+.+|..+... +..++.+.-. ..+| .+..++++ .+.++++.++..+..++..
T Consensus 164 ~~aL~nLs~~---~~~~~~i~~~~g~i~------------------~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~ 222 (457)
T 1xm9_A 164 TGCLRNLSSA---DAGRQTMRNYSGLID------------------SLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRL 222 (457)
T ss_dssp HHHHHHHTTS---HHHHHHHTTSTTHHH------------------HHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTH
T ss_pred HHHHHHHccC---HHHHHHHHHcCCCHH------------------HHHHHHHhhccccCCchHHHHHHHHHHHhcccch
Confidence 9998887653 2222211000 1222 22322221 2333444443333333200
Q ss_pred ---------------------------h------------------------ChH-hHHHHHHHHHHHhcCCc-chHHHH
Q psy14014 459 ---------------------------L------------------------GVE-FFDEKLNALCMTWLVDH-VYAIRE 485 (615)
Q Consensus 459 ---------------------------~------------------------~~~-~~~~~l~~~l~~~l~d~-~~~vR~ 485 (615)
+ |.+ ......++.+..++.+. +..+++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e 302 (457)
T 1xm9_A 223 DAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLE 302 (457)
T ss_dssp HHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHH
T ss_pred hccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHH
Confidence 0 111 12345667777777543 578999
Q ss_pred HHHHHHHHHHHHhCh---H----Hh-hhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChh-hHHHhhHHHHHhhCCC
Q psy14014 486 AATLNLKKLVEQFGS---E----WA-QSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPT-VTANFLLPTVLNMAGD 556 (615)
Q Consensus 486 ~a~~~l~~l~~~~~~---~----~~-~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~-~~~~~i~~~l~~~~~D 556 (615)
.|+.++..++..-+. . .. ....+|.|.+++.+++..+|..+++++.+++..-... .+....+|.|.+++..
T Consensus 303 ~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~ 382 (457)
T 1xm9_A 303 ACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTS 382 (457)
T ss_dssp HHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTS
T ss_pred HHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccC
Confidence 999999999753322 1 11 1357899999999999999999999999998643222 2345688999998877
Q ss_pred CCc------hHHHHHHHHHHHHhHhhhhh---hHHhhHHHHHhhhcCCC-CccHHHHHHHHHHHHh
Q psy14014 557 NVA------NVRFNVAKTLQKIGPILETN---VIQSQVKPALDKLNGDT-DVDVKYFAQEAISSIA 612 (615)
Q Consensus 557 ~~~------~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~l~~d~-d~~v~~~a~~a~~~~~ 612 (615)
.++ ++...++.+++.+....+.. .......+.+..|...+ +..++..|...+..+.
T Consensus 383 ~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 383 HTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp CCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 654 57778889998887543211 11223455555555555 8899999999988764
No 62
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.49 E-value=1.9e-11 Score=124.78 Aligned_cols=363 Identities=12% Similarity=0.060 Sum_probs=224.8
Q ss_pred HHHHHHhhccCchhHHHHHHHHHHHHHhhcCh---hhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC---ccch
Q psy14014 208 IPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ---SDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVG---PEIT 281 (615)
Q Consensus 208 l~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~---~~~~ 281 (615)
+|.+..+++.+++.++..|..++..++..-+. .......+|.+.+++.+++..++..++.+|..++..-. ....
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 45566666666677777777777766543222 11223467777777777777788888888777764200 0011
Q ss_pred hhhHHHHHHHhhc-CCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhh--------CCC--------CHHHH
Q psy14014 282 KTDLVQAFQMLLK-DSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLV--------ADP--------NQHVK 344 (615)
Q Consensus 282 ~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~--------~d~--------~~~vR 344 (615)
....+|.|.++++ +.+++++..|+.+|..++.. ++.+..... ..+|.|.+++ .++ +..++
T Consensus 84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~--~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST--DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS--SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC--HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 2356888999998 77899999999999998875 333333333 7888888888 332 45667
Q ss_pred HHHHHHHHhhchhhc-chhhh--hhhHHHHHHhhcC------CChhHHHHHHHhhhHhhhhh------chhHHHH-----
Q psy14014 345 SALASVIMGLSPILG-KHNTV--DHLLPLFLSQLKD------ECPEVRLNIISNLDCVNEVI------GIQQWRV----- 404 (615)
Q Consensus 345 ~~~~~~l~~l~~~~g-~~~~~--~~l~p~l~~~l~d------~~~~vr~~a~~~l~~l~~~~------~~~~~~~----- 404 (615)
+.++++|.+++..-. ..... +..+|.+..++++ .+..++..++..+..+.... +......
T Consensus 161 ~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~ 240 (457)
T 1xm9_A 161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240 (457)
T ss_dssp HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred HHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccc
Confidence 799999999986511 11222 2577888877764 34567777766655543111 0000000
Q ss_pred --HHHHHhhhhhhh-----------------hccccch-hhhhhhhHHHHHhhhc-CCchHHHHHHHHhHHHHhhhChH-
Q psy14014 405 --RLAIIEYMPLLA-----------------GQLGVEF-FDEKLNALSIVELAED-SKWRVRLAIIEYMPLLAGQLGVE- 462 (615)
Q Consensus 405 --~~~i~~~l~~l~-----------------~~~~~~~-~~~~l~~~~i~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~- 462 (615)
.......+.... ..-|.+. +..... +.+..++.+ ++..+++.++.++..++..-+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l-~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAI-RTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp -------------------------CCCCCSSCCGGGGGGSHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred cccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchH-HHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 000000000000 0001111 111111 445555543 56789999999999997533321
Q ss_pred ------hH-HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhCh-HHhhhchhHHHHhhhcCCCc------hHHHHHHH
Q psy14014 463 ------FF-DEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGS-EWAQSTVIPKVVAMSRDQNY------LHRMTCLF 528 (615)
Q Consensus 463 ------~~-~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~i~~~l~~~~~d~~~------~~R~~a~~ 528 (615)
.+ ....+|.+.+++.+.+..+|..|+.++..++..-.. .......+|.|.+++...++ .+...++.
T Consensus 320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~ 399 (457)
T 1xm9_A 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACY 399 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHH
Confidence 11 134678999999999999999999999999763211 12234588999998887654 35567888
Q ss_pred HHHHHHhhhChhh---HHHhhHHHHHhhCCCC-CchHHHHHHHHHHHHhH
Q psy14014 529 CINVLAEACGPTV---TANFLLPTVLNMAGDN-VANVRFNVAKTLQKIGP 574 (615)
Q Consensus 529 ~l~~l~~~~~~~~---~~~~i~~~l~~~~~D~-~~~vr~~a~~~l~~l~~ 574 (615)
+++++...-+... .....+|.|..++..+ +..++..|+..|..+..
T Consensus 400 ~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 400 TVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS 449 (457)
T ss_dssp HHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHc
Confidence 8888875433211 1346788899988888 89999999999998764
No 63
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.48 E-value=1.7e-12 Score=121.81 Aligned_cols=225 Identities=12% Similarity=0.123 Sum_probs=172.2
Q ss_pred HHHHHHHhCCCChHHHHHHHHhHHHHHHHhch---hhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh---hH
Q psy14014 169 RSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV---DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS---DV 242 (615)
Q Consensus 169 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~ 242 (615)
.+.+..++.++++++|..++..+..+.....+ .......+|.+.++++++++.+|..|+.++..++...+.. ..
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 34566777888999999999999766554211 2334578899999999999999999999999987643321 12
Q ss_pred HHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCcc---chhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccc
Q psy14014 243 EQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPE---ITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYN 319 (615)
Q Consensus 243 ~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 319 (615)
....+|.+.++++++++.+|..++.+|+.++...... ......+|.+.+++++.++.+|..|+.+|..++..-+ +.
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~ 172 (252)
T 4db8_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQ 172 (252)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH-HH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh-HH
Confidence 2347899999999999999999999999987532211 1233689999999999999999999999999986422 11
Q ss_pred hhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc--hh-hhhhhHHHHHHhhcCCChhHHHHHHHhhhHhh
Q psy14014 320 QENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK--HN-TVDHLLPLFLSQLKDECPEVRLNIISNLDCVN 394 (615)
Q Consensus 320 ~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~--~~-~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~ 394 (615)
........++|.+.+++.++++.+|..++.+|+.++..-.. .. .....+|.+.+++.+.++.+|..|+.+|..+.
T Consensus 173 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 173 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 12223466889999999999999999999999999742111 11 22357899999999999999999999887664
No 64
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.48 E-value=8.3e-09 Score=114.56 Aligned_cols=419 Identities=10% Similarity=-0.001 Sum_probs=256.8
Q ss_pred HHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcHHHHHHHHHHhccccCC--------CCC----------cchh
Q psy14014 27 VQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPN--------VGG----------PEYV 88 (615)
Q Consensus 27 ~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~vr~~a~~~l~~l~~~--------~~~----------~~~~ 88 (615)
+.+|......+..+++...|+ .|+.+++-+.+.+..+..........|..+.+. +.. ....
T Consensus 114 ~~i~nKLa~~la~I~~~~~p~-~Wp~~l~dL~~~l~~~~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~ 192 (1023)
T 4hat_C 114 KNLINKSDLTLVQILKQEWPQ-NWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEF 192 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhChh-hchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 456777888999999887776 688999999888876554333333333222221 110 1123
Q ss_pred hhchHHHhhhhc-CchhHHHHHHHHHHHHHHhhcChhHH-hhhHHHHHH-HhhcCCCcchhhhHHhhhhhhccC-C-Ch-
Q psy14014 89 HCLLPPLESLAT-VEETVVRDKAVESLRLISAQHSPHDL-EAHFVPLVQ-RLASGDWFTSRTSACGLFSVCYPR-V-TA- 162 (615)
Q Consensus 89 ~~l~~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~l~~l~-~l~~~~~~~~r~~a~~~l~~~~~~-~-~~- 162 (615)
+.+++.+..++. .+.+.+...+++++.....+++...+ ...+++.+. .+..+ ...|..|+.++..+... . ++
T Consensus 193 ~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~~--~~~r~~A~ecL~eIv~~~~~~~~ 270 (1023)
T 4hat_C 193 EQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMTS--PDTRAITLKCLTEVSNLKIPQDN 270 (1023)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHHS--HHHHHHHHHHHHHHHTSCCCSSC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcCC--HHHHHHHHHHHHHHHccccCCch
Confidence 445555555543 34677888999999999999887654 445778777 66653 35788899988887753 2 22
Q ss_pred -hhHH-------HHHHHH-H-------------HHhCCCChHHHHHHHHhHHHHHHHhchhh--------hHhhhHHHHH
Q psy14014 163 -GVKA-------ELRSHF-R-------------NLCQDDTPMVRRAAAGKLGELAKVVEVDY--------LKTDIIPMFV 212 (615)
Q Consensus 163 -~~~~-------~l~~~l-~-------------~l~~d~~~~vR~~a~~~l~~l~~~~~~~~--------~~~~ll~~l~ 212 (615)
...+ .+++.+ . ....+.+.+..+..+..+..+++....-. .....+..+.
T Consensus 271 ~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll 350 (1023)
T 4hat_C 271 DLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLI 350 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH
Confidence 1211 122211 1 01123456777778888877776543311 1111233555
Q ss_pred HhhccCchhHHHHHHHHHHHHHhhcChh--------hHHHhHHHHHHHhcC----------C-CCh----------HHHH
Q psy14014 213 NLAQDEQDSVRLLAVEACVSIASLLSQS--------DVEQLVMPTLRQCSG----------D-TSW----------RVRY 263 (615)
Q Consensus 213 ~~~~d~~~~vr~~a~~~l~~l~~~~~~~--------~~~~~l~~~l~~~~~----------d-~~~----------~vR~ 263 (615)
.....++.++-..+++.|..+++.+-.+ .+...+++.+.+-+. | .+| ....
T Consensus 351 ~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f 430 (1023)
T 4hat_C 351 QLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLY 430 (1023)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHH
T ss_pred HhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHH
Confidence 6666778888889999999888754321 122234555543321 1 112 1111
Q ss_pred -HHHHHHHHHHHHhCccchhhhHHHHHHHhhcC--CcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhC---
Q psy14014 264 -MVADKFTDLQKAVGPEITKTDLVQAFQMLLKD--SEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVA--- 337 (615)
Q Consensus 264 -~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~--- 337 (615)
..-.+|..+....+. .....+++.+.+.+.+ .+|..|++++.+++.+...+.++. ...+++.++|.+..+..
T Consensus 431 ~~~Rd~L~~l~~l~~~-~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~-e~~~l~~vi~~Ll~l~~~~~ 508 (1023)
T 4hat_C 431 KSEREVLVYLTHLNVI-DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDT-EKRFVVTVIKDLLDLCVKKR 508 (1023)
T ss_dssp HHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHH-HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhccCHH-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchh-HHHHHHHHHHHHHHhhhccc
Confidence 011445555443332 2233455555555554 679999999999999998765442 33678888998888876
Q ss_pred --CCCHHHHHHHHHHHHhhchhhcc-hhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhh
Q psy14014 338 --DPNQHVKSALASVIMGLSPILGK-HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPL 414 (615)
Q Consensus 338 --d~~~~vR~~~~~~l~~l~~~~g~-~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~ 414 (615)
|+...||.++++.+|+.++.+.. ..+.+.++..+.+.+.+.++.|...|+.++..+++..+..- ..
T Consensus 509 ~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l----------~~- 577 (1023)
T 4hat_C 509 GKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHF----------VI- 577 (1023)
T ss_dssp SHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHH----------HS-
T ss_pred cCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHh----------hc-
Confidence 46678889999999999998753 34566677778888888889999999999998877554211 00
Q ss_pred hhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHh
Q psy14014 415 LAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEF 463 (615)
Q Consensus 415 l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~ 463 (615)
....-...|+.+.+ ..+.....+-...-+..+.++++.+.+..+...
T Consensus 578 ~~~~e~~p~~~~il--~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~ 624 (1023)
T 4hat_C 578 QQPRESEPFIQTII--RDIQKTTADLQPQQVHTFYKACGIIISEERSVA 624 (1023)
T ss_dssp CCTTCSSCHHHHHH--HTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHH
T ss_pred cCCCCCchhHHHHH--HHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHh
Confidence 00000012333332 233444444566677889999999999887544
No 65
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.48 E-value=6.6e-11 Score=121.59 Aligned_cols=367 Identities=13% Similarity=0.061 Sum_probs=230.6
Q ss_pred HhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh---hHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCc--
Q psy14014 204 KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS---DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGP-- 278 (615)
Q Consensus 204 ~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~-- 278 (615)
...-+|.+.+++..+++.++..|..++..++..-... ......+|.|.+++.+++..++..++.+|..++..-+.
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence 3445677777777777777777777777666432211 11223677788888888888888888888877642111
Q ss_pred --cchhhhHHHHHHHhhcC-CcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhh------------------C
Q psy14014 279 --EITKTDLVQAFQMLLKD-SEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLV------------------A 337 (615)
Q Consensus 279 --~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~------------------~ 337 (615)
.+.....+|.|+.+++. .+.++++.|+.+|-.+... ++.+. .+....+|.|.+++ .
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~--~~~k~-~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~ 202 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH--DSIKM-EIVDHALHALTDEVIIPHSGWEREPNEDCKPRH 202 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS--GGGHH-HHHHHTHHHHHHHTHHHHHCCC----------C
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhhH-HHHhccHHHHHHHHhcccccccccccccccccc
Confidence 11223578888888886 5778899988888887762 22222 23345677777654 1
Q ss_pred CCCHHHHHHHHHHHHhhchhhc--chhhh--hhhHHHHHHhhcC------CChhHHHHHHHhhhHhhhhhchh-----HH
Q psy14014 338 DPNQHVKSALASVIMGLSPILG--KHNTV--DHLLPLFLSQLKD------ECPEVRLNIISNLDCVNEVIGIQ-----QW 402 (615)
Q Consensus 338 d~~~~vR~~~~~~l~~l~~~~g--~~~~~--~~l~p~l~~~l~d------~~~~vr~~a~~~l~~l~~~~~~~-----~~ 402 (615)
..+..|+..++.+|.+++..-. ..... .-+++.++.++++ .+...++.|+.+|..+......+ .+
T Consensus 203 ~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~ 282 (584)
T 3l6x_A 203 IEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERY 282 (584)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-
T ss_pred cccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhh
Confidence 2357999999999999975321 12221 2355666666542 45677888888876655322110 01
Q ss_pred HHHHHHHhhhhhhhhccccchh-hhhhhhHHHHHhhh-cCCchHHHHHHHHhHHHHhhhCh--H----hH-HHHHHHHHH
Q psy14014 403 RVRLAIIEYMPLLAGQLGVEFF-DEKLNALSIVELAE-DSKWRVRLAIIEYMPLLAGQLGV--E----FF-DEKLNALCM 473 (615)
Q Consensus 403 ~~~~~i~~~l~~l~~~~~~~~~-~~~l~~~~i~~~~~-~~~~~vr~~~~~~l~~l~~~~~~--~----~~-~~~l~~~l~ 473 (615)
.+.......-+.....-|.+.+ ..... +.+..++. ..+..+++.++.+|..++..-+. . .+ ....+|.+.
T Consensus 283 ~~~~~~~~~~~~~~~~~Gve~L~~~~~v-~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv 361 (584)
T 3l6x_A 283 QEAAPNVANNTGTSPARGYELLFQPEVV-RIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIA 361 (584)
T ss_dssp -------------CCCCGGGGGGSHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHH
T ss_pred hhhcccccccccccCchhHHHHhcccHH-HHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHH
Confidence 0000000000011112222221 11111 45566664 46788999999999999753221 1 11 145689999
Q ss_pred HhcCCcchHHHHHHHHHHHHHHHHhCh-HHhhhchhHHHHhhhcCC--------CchHHHHHHHHHHHHHhhhCh---hh
Q psy14014 474 TWLVDHVYAIREAATLNLKKLVEQFGS-EWAQSTVIPKVVAMSRDQ--------NYLHRMTCLFCINVLAEACGP---TV 541 (615)
Q Consensus 474 ~~l~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~i~~~l~~~~~d~--------~~~~R~~a~~~l~~l~~~~~~---~~ 541 (615)
+++.+++..+++.|+.+|..++..-.. ..+....+|.|..++.+. +..++..++.+++++...-.. ..
T Consensus 362 ~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I 441 (584)
T 3l6x_A 362 DLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKL 441 (584)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999999999999999999999875432 223345889999988775 345678899999988633111 12
Q ss_pred HHHhhHHHHHhhCCCC--CchHHHHHHHHHHHHhH
Q psy14014 542 TANFLLPTVLNMAGDN--VANVRFNVAKTLQKIGP 574 (615)
Q Consensus 542 ~~~~i~~~l~~~~~D~--~~~vr~~a~~~l~~l~~ 574 (615)
.....+|.|..++.+. .+.++..|+.+|..+..
T Consensus 442 ~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 442 RETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred HHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 3456889999988775 78999999999999864
No 66
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.47 E-value=3.8e-09 Score=112.61 Aligned_cols=331 Identities=14% Similarity=0.063 Sum_probs=219.6
Q ss_pred CchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcC---CCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhc
Q psy14014 218 EQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSG---DTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLK 294 (615)
Q Consensus 218 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~---d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 294 (615)
..+..+-.|..+++.+-..-..+ .+..+.+.+. ..+..+|..++..+|.+....+. ..+..|...+.
T Consensus 370 ~~~~~k~sA~aSLGlIh~g~~~~-----gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-----~~~~lL~~~L~ 439 (963)
T 4ady_A 370 AQNWAKFTATASLGVIHKGNLLE-----GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-----DTTDYLKNIIV 439 (963)
T ss_dssp CCTHHHHHHHHHHHHHTSSCTTT-----HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-----HHHHHHHHHHH
T ss_pred cchHHHHHHHHHhhhhccCchHH-----HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHc
Confidence 34456777777887764433222 3555666665 56789999999999998766553 35566666665
Q ss_pred CCc--------HHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhh
Q psy14014 295 DSE--------AEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDH 366 (615)
Q Consensus 295 d~~--------~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~ 366 (615)
+.+ +.+|..|+.+|+...-.... +.++..|.+.+.|.+..+|..++.+++-+--..|.......
T Consensus 440 ~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~--------eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~ 511 (963)
T 4ady_A 440 ENSGTSGDEDVDVLLHGASLGIGLAAMGSAN--------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHD 511 (963)
T ss_dssp HHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC--------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred CccccccccccHHHHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHH
Confidence 544 67999999999876432222 23556666777777778888888888876444454444444
Q ss_pred hHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHH
Q psy14014 367 LLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRL 446 (615)
Q Consensus 367 l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~ 446 (615)
++..+. .+.+..+|..+..+|+.+. +|... ..+ ..+..+..+.+|-+|.
T Consensus 512 LL~~~~---e~~~e~vrR~aalgLGll~--~g~~e---------~~~-----------------~li~~L~~~~dp~vRy 560 (963)
T 4ady_A 512 MFTYSQ---ETQHGNITRGLAVGLALIN--YGRQE---------LAD-----------------DLITKMLASDESLLRY 560 (963)
T ss_dssp HHHHHH---HCSCHHHHHHHHHHHHHHT--TTCGG---------GGH-----------------HHHHHHHHCSCHHHHH
T ss_pred HHHHHh---ccCcHHHHHHHHHHHHhhh--CCChH---------HHH-----------------HHHHHHHhCCCHHHHH
Confidence 444333 4567789999888887552 12111 010 1223344578899999
Q ss_pred HHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHh-hhcCCCchHHHH
Q psy14014 447 AIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVA-MSRDQNYLHRMT 525 (615)
Q Consensus 447 ~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~-~~~d~~~~~R~~ 525 (615)
.++.+++.-.-..|.....+.++. .+..|.+..||.+|+.+|+.+.- |.. ...|.+.. +..+.++.+|..
T Consensus 561 gaa~alglAyaGTGn~~aIq~LL~---~~~~d~~d~VRraAViaLGlI~~--g~~----e~v~rlv~~L~~~~d~~VR~g 631 (963)
T 4ady_A 561 GGAFTIALAYAGTGNNSAVKRLLH---VAVSDSNDDVRRAAVIALGFVLL--RDY----TTVPRIVQLLSKSHNAHVRCG 631 (963)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHH---HHHHCSCHHHHHHHHHHHHHHTS--SSC----SSHHHHTTTGGGCSCHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHH---HhccCCcHHHHHHHHHHHHhhcc--CCH----HHHHHHHHHHHhcCCHHHHHH
Confidence 999888766555666433333333 33457788899999999988742 322 35666666 556789999999
Q ss_pred HHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHHHHHhhh---cC--CCCccH
Q psy14014 526 CLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL---NG--DTDVDV 600 (615)
Q Consensus 526 a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l---~~--d~d~~v 600 (615)
++.++|.+...-+. ..++..|.++..|++..||.+|+.+|+.+.....+. ..+.+..+++.| .. ++|..+
T Consensus 632 AalALGli~aGn~~----~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna-~~~rva~~l~~L~~~~~dk~~d~~~ 706 (963)
T 4ady_A 632 TAFALGIACAGKGL----QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEK-LNPQVADINKNFLSVITNKHQEGLA 706 (963)
T ss_dssp HHHHHHHHTSSSCC----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTT-TCTTHHHHHHHHHHHHHCSSSCHHH
T ss_pred HHHHHHHhccCCCc----HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccc-cchHHHHHHHHHHHHHhcccccHHH
Confidence 99999998643332 346778888899999999999999999998654322 112334433333 33 467889
Q ss_pred HHHHHHHHHHH
Q psy14014 601 KYFAQEAISSI 611 (615)
Q Consensus 601 ~~~a~~a~~~~ 611 (615)
+.-+.-|.+.+
T Consensus 707 ~fga~iAqGll 717 (963)
T 4ady_A 707 KFGACVAQGIM 717 (963)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998876
No 67
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.46 E-value=5.4e-12 Score=116.88 Aligned_cols=191 Identities=13% Similarity=0.144 Sum_probs=157.3
Q ss_pred HHHHhCCCChHHHHHHHHhHHH-HHHHhch----hhhHhhhHHHHHHhh-ccCchhHHHHHHHHHHHHHhhcC-hh---h
Q psy14014 172 FRNLCQDDTPMVRRAAAGKLGE-LAKVVEV----DYLKTDIIPMFVNLA-QDEQDSVRLLAVEACVSIASLLS-QS---D 241 (615)
Q Consensus 172 l~~l~~d~~~~vR~~a~~~l~~-l~~~~~~----~~~~~~ll~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~-~~---~ 241 (615)
|...+++++|..|+.++..+.. +++..+. ......++..+.+.+ +|.+..||..|+.+++.+++.++ +. .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 5666789999999999999999 8754221 111246788888888 79999999999999999999987 42 4
Q ss_pred HHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccc---hhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcccc
Q psy14014 242 VEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEI---TKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAY 318 (615)
Q Consensus 242 ~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 318 (615)
+...++|.+.+.+.|....||.++..++..++...++.. ..+.+++.+...+++.++.+|..++..+..++...+..
T Consensus 101 y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~ 180 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDG 180 (249)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCc
Confidence 556689999999999999999999999999998874321 14578999999999999999999999999999876531
Q ss_pred -chhHHHH-HhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchh
Q psy14014 319 -NQENIIM-TYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHN 362 (615)
Q Consensus 319 -~~~~~~~-~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~ 362 (615)
..-..++ +.++|.+.++++|.+..||.++.++++.++..+|.+.
T Consensus 181 ~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~ 226 (249)
T 2qk1_A 181 YSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNT 226 (249)
T ss_dssp SHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGG
T ss_pred chhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHH
Confidence 1112356 8899999999999999999999999999999999754
No 68
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.46 E-value=1.1e-11 Score=116.32 Aligned_cols=233 Identities=13% Similarity=0.064 Sum_probs=172.8
Q ss_pred hHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh---hHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC---ccc
Q psy14014 207 IIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS---DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVG---PEI 280 (615)
Q Consensus 207 ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~---~~~ 280 (615)
.+|.+.++++++++.+|..|..++..++...+.. ......+|.+.+++++++..+|..++.+++.++.... ...
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 3677888889889999999999999998765421 1223588999999999999999999999999875311 111
Q ss_pred hhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc
Q psy14014 281 TKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK 360 (615)
Q Consensus 281 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~ 360 (615)
.....+|.+..+++++++++|..|+.+|..++... ++..........+|.+.+++.++++.+|..++.+++.++.....
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 22367999999999999999999999999998532 22222233456889999999999999999999999999864221
Q ss_pred ---hhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhh
Q psy14014 361 ---HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELA 437 (615)
Q Consensus 361 ---~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~ 437 (615)
.......+|.+.+++.++++.+|..++.++..+.... ....+.+ . ..... +.+.+++
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~l-----~------------~~~~i-~~L~~ll 221 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP--TSAIKAI-----V------------DAGGV-EVLQKLL 221 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB--HHHHHHH-----H------------HTTHH-HHHHHGG
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC--HHHHHHH-----H------------HCCCH-HHHHHHH
Confidence 1123457899999999999999999999998886521 1111111 0 00011 5677777
Q ss_pred hcCCchHHHHHHHHhHHHHhhhC
Q psy14014 438 EDSKWRVRLAIIEYMPLLAGQLG 460 (615)
Q Consensus 438 ~~~~~~vr~~~~~~l~~l~~~~~ 460 (615)
+++++.+|..++.++..++...+
T Consensus 222 ~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 222 TSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp GCSCHHHHHHHHHHHHHHHHTCB
T ss_pred CCCcHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888876443
No 69
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.46 E-value=4.7e-11 Score=119.86 Aligned_cols=253 Identities=11% Similarity=0.026 Sum_probs=175.0
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhC-----------CCCHHHHHHHHHHHHhhchhhcc--hhh--hhhh
Q psy14014 303 AAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVA-----------DPNQHVKSALASVIMGLSPILGK--HNT--VDHL 367 (615)
Q Consensus 303 ~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~-----------d~~~~vR~~~~~~l~~l~~~~g~--~~~--~~~l 367 (615)
.|+.+|..+.. .++.+........+|.|..++. +.++.++..++++|..++..-.. ..+ ....
T Consensus 167 qAv~aL~nls~--~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~Ga 244 (458)
T 3nmz_A 167 PAVCVLMKLSF--DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 244 (458)
T ss_dssp HHHHHHHHHTT--SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHH
T ss_pred HHHHHHHHhcC--CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCc
Confidence 78888888754 3444444444556777777663 13467899999999999853221 122 2346
Q ss_pred HHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHh-hhcCCchHHH
Q psy14014 368 LPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVEL-AEDSKWRVRL 446 (615)
Q Consensus 368 ~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~-~~~~~~~vr~ 446 (615)
+|.+++++..++++++..|+.+|..+..... ...+..+.-...+ |.+.++ .++.+..++.
T Consensus 245 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~-~~~k~~I~~~GaI------------------~~LV~lLl~s~~~~v~~ 305 (458)
T 3nmz_A 245 MRALVAQLKSESEDLQQVIASVLRNLSWRAD-VNSKKTLREVGSV------------------KALMECALEVKKESTLK 305 (458)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTSSCC-HHHHHHHHHTTHH------------------HHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC-HHHHHHHHHcCCH------------------HHHHHHHhcCCCHHHHH
Confidence 8999999999999999999999988754211 1111111000112 566665 4556788999
Q ss_pred HHHHHhHHHHhhh-C--hHhH-HHHHHHHHHHhcCCcch----HHHHHHHHHHHHHHHHh--ChHH----hhhchhHHHH
Q psy14014 447 AIIEYMPLLAGQL-G--VEFF-DEKLNALCMTWLVDHVY----AIREAATLNLKKLVEQF--GSEW----AQSTVIPKVV 512 (615)
Q Consensus 447 ~~~~~l~~l~~~~-~--~~~~-~~~l~~~l~~~l~d~~~----~vR~~a~~~l~~l~~~~--~~~~----~~~~i~~~l~ 512 (615)
.++.++..++... + .... ....+|.+..++.+... .+++.|..+|..++..+ +++. .....+|.|.
T Consensus 306 ~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv 385 (458)
T 3nmz_A 306 SVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLL 385 (458)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHH
Confidence 9999988887622 1 1222 24578888888876543 58999999999998631 2221 1234789999
Q ss_pred hhhcCCCchHHHHHHHHHHHHHhhhCh---hhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhh
Q psy14014 513 AMSRDQNYLHRMTCLFCINVLAEACGP---TVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPIL 576 (615)
Q Consensus 513 ~~~~d~~~~~R~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~ 576 (615)
.++.+++..++..|+.++++++..... .......+|.|..++..+++.+|..|+.+|.++....
T Consensus 386 ~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 386 QHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999732111 1224568899999999999999999999999998654
No 70
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.45 E-value=1.9e-09 Score=119.57 Aligned_cols=517 Identities=9% Similarity=0.057 Sum_probs=281.3
Q ss_pred cchHHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcHHHHHHHHHHhccccCC----CCCc--
Q psy14014 12 LYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPN----VGGP-- 85 (615)
Q Consensus 12 ~~~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~vr~~a~~~l~~l~~~----~~~~-- 85 (615)
+..+..++..+.+++...|..|-+.|...-. .++ .|..+..++.. +.+..+|..++..|...+.. +..+
T Consensus 15 v~~Le~av~~ly~p~~~~r~~A~~~L~~~q~--sp~-aw~~~~~iL~~--s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~ 89 (1023)
T 4hat_C 15 IALLDQVVSTFYQGSGVQQKQAQEILTKFQD--NPD-AWQKADQILQF--STNPQSKFIALSILDKLITRKWKLLPNDHR 89 (1023)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH--CTT-GGGGHHHHHHH--CCCHHHHHHHHHHHHHHHHHHGGGSCHHHH
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHc--Ccc-HHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHhhhhcCCHHHH
Confidence 4567788888888777788888888876532 233 56655555532 22335888888877765541 1111
Q ss_pred -chhhhchHHHhhhhcCc-----hhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccC
Q psy14014 86 -EYVHCLLPPLESLATVE-----ETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPR 159 (615)
Q Consensus 86 -~~~~~l~~~l~~l~~~~-----~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~ 159 (615)
...+.++..+.+..+++ ...+|...+.++..++.+.-++ -.+.+++.+..+.... ......+..++..+.+.
T Consensus 90 ~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~-~Wp~~l~dL~~~l~~~-~~~~~~~L~iL~~L~EE 167 (1023)
T 4hat_C 90 IGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ-NWPEFIPELIGSSSSS-VNVCENNMIVLKLLSEE 167 (1023)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHHHTTTC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChh-hchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHH
Confidence 11233444444443343 2455666666666666654332 2445555554444321 11111111111111100
Q ss_pred CChhhHHHHHHHHHHHhCCCChHHHH-HHHHhHHHHHHHhchhhhHhhhHHHHHHhhc-cCchhHHHHHHHHHHHHHhhc
Q psy14014 160 VTAGVKAELRSHFRNLCQDDTPMVRR-AAAGKLGELAKVVEVDYLKTDIIPMFVNLAQ-DEQDSVRLLAVEACVSIASLL 237 (615)
Q Consensus 160 ~~~~~~~~l~~~l~~l~~d~~~~vR~-~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~ 237 (615)
+.....+....-|+ ..-+.+..- .+.+++.+...++ ..+..+...+++++....+.+
T Consensus 168 ------------V~~~~~~~l~~~r~~~lk~~l~~~---------~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI 226 (1023)
T 4hat_C 168 ------------VFDFSAEQMTQAKALHLKNSMSKE---------FEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWI 226 (1023)
T ss_dssp ------------HHTSCTTTSCHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTS
T ss_pred ------------HHHhhhccchHHHHHHHHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhC
Confidence 00000111111111 111111111 2345555555554 346678888999999988887
Q ss_pred ChhhH-HHhHHHHHH-HhcCCCChHHHHHHHHHHHHHHHH-h-Ccc-chhhh-------HHHHH-HH-------------
Q psy14014 238 SQSDV-EQLVMPTLR-QCSGDTSWRVRYMVADKFTDLQKA-V-GPE-ITKTD-------LVQAF-QM------------- 291 (615)
Q Consensus 238 ~~~~~-~~~l~~~l~-~~~~d~~~~vR~~~~~~l~~l~~~-~-~~~-~~~~~-------l~~~l-~~------------- 291 (615)
+-..+ .+.+++.+. .++. ++..|..++++|..+... . ++. ...+. +++.+ ..
T Consensus 227 ~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~ 304 (1023)
T 4hat_C 227 PYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYA 304 (1023)
T ss_dssp CTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHH
T ss_pred CHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHh
Confidence 76533 335777777 6664 456899999999988752 2 221 11111 12211 10
Q ss_pred hhcCCcHHHHHHHHHHHHHHHhhcccc----chhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc-------
Q psy14014 292 LLKDSEAEVRAAAANKVRDFCQNLDAY----NQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK------- 360 (615)
Q Consensus 292 ~l~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~------- 360 (615)
...+.+.+..+.-+..+..+++....- ......+..++.++......+++.+=..+..-+..+.+.+-.
T Consensus 305 ~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~ 384 (1023)
T 4hat_C 305 NANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHI 384 (1023)
T ss_dssp HTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGG
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 012345565555555655555432211 010123333445666666777888866667766666653221
Q ss_pred -hhhhhhhHHHHHHhhcCCC---------hh-HH--------HHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhcccc
Q psy14014 361 -HNTVDHLLPLFLSQLKDEC---------PE-VR--------LNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGV 421 (615)
Q Consensus 361 -~~~~~~l~p~l~~~l~d~~---------~~-vr--------~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~ 421 (615)
..+..++++.+.+-+.-+. .+ +| ....+. ++ +.+-.+..-.+.
T Consensus 385 ~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~------------~R------d~L~~l~~l~~~ 446 (1023)
T 4hat_C 385 YEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKS------------ER------EVLVYLTHLNVI 446 (1023)
T ss_dssp GHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHH------------HH------HHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHH------------HH------HHHHHHhccCHH
Confidence 1123345555554443211 00 00 000000 00 001111111111
Q ss_pred chhhhhhhhHHHHHhhh--cCCchHHHHHHHHhHHHHhhhChH---hHHHHHHHHHHHhcC-----CcchHHHHHHHHHH
Q psy14014 422 EFFDEKLNALSIVELAE--DSKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNALCMTWLV-----DHVYAIREAATLNL 491 (615)
Q Consensus 422 ~~~~~~l~~~~i~~~~~--~~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~-----d~~~~vR~~a~~~l 491 (615)
+.+. .+. +.+.+.+. +.+|+.|++++.+++.++.....+ .+...++|.++.++. |+...||.+++.++
T Consensus 447 ~~~~-~~~-~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~l 524 (1023)
T 4hat_C 447 DTEE-IMI-SKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVV 524 (1023)
T ss_dssp HHHH-HHH-HHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred HHHH-HHH-HHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHH
Confidence 1100 010 23333333 368999999999999999877653 345677888888775 46677888999999
Q ss_pred HHHHHHhChH-HhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhh----------HHHhhHHHHHhhCCCCCch
Q psy14014 492 KKLVEQFGSE-WAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTV----------TANFLLPTVLNMAGDNVAN 560 (615)
Q Consensus 492 ~~l~~~~~~~-~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~----------~~~~i~~~l~~~~~D~~~~ 560 (615)
|.+.+-+... .+.+.+++.+...+.++++.+...|+.++..+++.|.... +.+.++..+.....+-.+.
T Consensus 525 Gry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~ 604 (1023)
T 4hat_C 525 GQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQ 604 (1023)
T ss_dssp HTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHH
Confidence 9988866321 1345577777788888899999999999999999887644 3444555555556666777
Q ss_pred HHHHHHHHHHHHhHhhhh
Q psy14014 561 VRFNVAKTLQKIGPILET 578 (615)
Q Consensus 561 vr~~a~~~l~~l~~~~~~ 578 (615)
-+..+..+++.+++..++
T Consensus 605 ~~~~lyeai~~vi~~~~~ 622 (1023)
T 4hat_C 605 QVHTFYKACGIIISEERS 622 (1023)
T ss_dssp HHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 888999999999987763
No 71
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.43 E-value=6.5e-12 Score=117.86 Aligned_cols=228 Identities=14% Similarity=0.135 Sum_probs=168.5
Q ss_pred hhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHH
Q psy14014 366 HLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVR 445 (615)
Q Consensus 366 ~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr 445 (615)
.-.|.+.+.+++++++++..|+.++..+... ..+.. ... + ..... |.+.+++++++..+|
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~-~~~-----~------------~~g~i-~~L~~lL~~~~~~v~ 71 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQI-QAV-----I------------DAGAL-PALVQLLSSPNEQIL 71 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHH-HHH-----H------------HTTHH-HHHHHGGGCSCHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchH-HHH-----H------------HcCcH-HHHHHHHcCCCHHHH
Confidence 3467788888888889999999888655433 11111 111 0 00111 678888888889999
Q ss_pred HHHHHHhHHHHhhhC---hHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChH---HhhhchhHHHHhhhcCCC
Q psy14014 446 LAIIEYMPLLAGQLG---VEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSE---WAQSTVIPKVVAMSRDQN 519 (615)
Q Consensus 446 ~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~d~~ 519 (615)
..++.++..++.... ........+|.+.+++.+++..+|..|+.+++.++...... ......+|.|.+++.+++
T Consensus 72 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~ 151 (252)
T 4db8_A 72 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 151 (252)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCC
Confidence 999999999975221 12223447899999999999999999999999997542211 122458999999999999
Q ss_pred chHHHHHHHHHHHHHhhhChh---hHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhh---hhHHhhHHHHHhhhc
Q psy14014 520 YLHRMTCLFCINVLAEACGPT---VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET---NVIQSQVKPALDKLN 593 (615)
Q Consensus 520 ~~~R~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~l~ 593 (615)
+.+|..++.++++++...+.. .....++|.|..++.++++.+|..++.+|++++...+. ......+.+.+..++
T Consensus 152 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll 231 (252)
T 4db8_A 152 EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 231 (252)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHh
Confidence 999999999999998543221 12356899999999999999999999999999853321 223445777778888
Q ss_pred CCCCccHHHHHHHHHHHHhh
Q psy14014 594 GDTDVDVKYFAQEAISSIAD 613 (615)
Q Consensus 594 ~d~d~~v~~~a~~a~~~~~~ 613 (615)
.+.+++||..|..++..+++
T Consensus 232 ~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 232 SHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp TCSSSHHHHTHHHHHHTTC-
T ss_pred CCCCHHHHHHHHHHHHHHhc
Confidence 89999999999999998764
No 72
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.37 E-value=4.8e-10 Score=112.60 Aligned_cols=312 Identities=11% Similarity=0.035 Sum_probs=206.1
Q ss_pred hHhhhHHHHHHhhccC------------chhHHHHHHHHHHHHHhhcChhhHH---HhHH----------HHHHHhcCCC
Q psy14014 203 LKTDIIPMFVNLAQDE------------QDSVRLLAVEACVSIASLLSQSDVE---QLVM----------PTLRQCSGDT 257 (615)
Q Consensus 203 ~~~~ll~~l~~~~~d~------------~~~vr~~a~~~l~~l~~~~~~~~~~---~~l~----------~~l~~~~~d~ 257 (615)
.....+|.|.++++.. ++++|..|..++..++..-++.... ..++ +.+.+++..+
T Consensus 67 ~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 146 (458)
T 3nmz_A 67 RQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAH 146 (458)
T ss_dssp HHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Confidence 4567889999988853 2699999999999999887754211 1222 2333333322
Q ss_pred C-----h--HHHH-------HHHHHHHHHHHHh--CccchhhhHHHHHHHhhc-----------CCcHHHHHHHHHHHHH
Q psy14014 258 S-----W--RVRY-------MVADKFTDLQKAV--GPEITKTDLVQAFQMLLK-----------DSEAEVRAAAANKVRD 310 (615)
Q Consensus 258 ~-----~--~vR~-------~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~-----------d~~~~vr~~a~~~l~~ 310 (615)
+ . .+|. .++.+|++++..- ...+.....++.+..++. +.++.++..|+.+|..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~n 226 (458)
T 3nmz_A 147 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTN 226 (458)
T ss_dssp SSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHH
Confidence 1 1 1554 7777777774321 011122356777777773 1357899999999999
Q ss_pred HHhhccccchhHHH--HHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhc---chhhh-hhhHHHHHHhh-cCCChhHH
Q psy14014 311 FCQNLDAYNQENII--MTYILPYVKDLVADPNQHVKSALASVIMGLSPILG---KHNTV-DHLLPLFLSQL-KDECPEVR 383 (615)
Q Consensus 311 ~~~~~~~~~~~~~~--~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g---~~~~~-~~l~p~l~~~l-~d~~~~vr 383 (615)
++..- +.....+ ...++|.|.+++.+++..++..++++|..++..-+ +..+. ...+|.+++++ ...++.++
T Consensus 227 La~~~--~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~ 304 (458)
T 3nmz_A 227 LTFGD--VANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 304 (458)
T ss_dssp HHTTC--HHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHH
T ss_pred HhCCC--cccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHH
Confidence 88642 2111122 24578999999999999999999999999875311 12222 24688899974 55678999
Q ss_pred HHHHHhhhHhhhhhchhHHHHHHH-HHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCc----hHHHHHHHHhHHHHhh
Q psy14014 384 LNIISNLDCVNEVIGIQQWRVRLA-IIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKW----RVRLAIIEYMPLLAGQ 458 (615)
Q Consensus 384 ~~a~~~l~~l~~~~~~~~~~~~~~-i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~----~vr~~~~~~l~~l~~~ 458 (615)
..++.++..+...... .+.... ....+ |.+.+++.+... .++..++.+|..++..
T Consensus 305 ~~A~~aL~nLs~~~~~--nk~~I~~~~Gal------------------~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~ 364 (458)
T 3nmz_A 305 KSVLSALWNLSAHCTE--NKADICAVDGAL------------------AFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 364 (458)
T ss_dssp HHHHHHHHHHHHHCHH--HHHHHHHSTTHH------------------HHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCHH--HHHHHHHhcCcH------------------HHHHHHhcCCCCcchHHHHHHHHHHHHHHHhc
Confidence 9998888777642211 111110 00112 566777765433 4888888888888752
Q ss_pred --hChH----hHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChH----HhhhchhHHHHhhhcCCCchHHHHHHH
Q psy14014 459 --LGVE----FFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSE----WAQSTVIPKVVAMSRDQNYLHRMTCLF 528 (615)
Q Consensus 459 --~~~~----~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~~~~d~~~~~R~~a~~ 528 (615)
-+.+ ......+|.+..++.+.+..+++.|+.++..++.. +++ ......+|.|.+++.+++..+|..|+.
T Consensus 365 ~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~ 443 (458)
T 3nmz_A 365 IATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAA 443 (458)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHH
T ss_pred ccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHH
Confidence 1222 12234688899999999999999999999999742 222 122347899999999999999999999
Q ss_pred HHHHHHhhh
Q psy14014 529 CINVLAEAC 537 (615)
Q Consensus 529 ~l~~l~~~~ 537 (615)
+|.++...-
T Consensus 444 AL~nL~~~~ 452 (458)
T 3nmz_A 444 ALRNLMANR 452 (458)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHcCC
Confidence 999998654
No 73
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=99.35 E-value=1.4e-13 Score=125.26 Aligned_cols=187 Identities=21% Similarity=0.198 Sum_probs=136.5
Q ss_pred HHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHH
Q psy14014 173 RNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQ 252 (615)
Q Consensus 173 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~ 252 (615)
..+++|+++.||..++..+. ...+..+++|+++.||..+...+ +. +.+..
T Consensus 56 ~~ll~d~~~~VR~~AA~~l~---------------~~~l~~L~~D~~~~VR~~aA~~L-------~~--------~~L~~ 105 (244)
T 1lrv_A 56 VQYLADPFWERRAIAVRYSP---------------VEALTPLIRDSDEVVRRAVAYRL-------PR--------EQLSA 105 (244)
T ss_dssp GGGTTCSSHHHHHHHHTTSC---------------GGGGGGGTTCSSHHHHHHHHTTS-------CS--------GGGGG
T ss_pred HHHhcCCCHHHHHHHHHhCC---------------HHHHHHHccCcCHHHHHHHHHHC-------CH--------HHHHH
Confidence 46779999999999988641 12357778999999999887643 22 34667
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHH
Q psy14014 253 CSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYV 332 (615)
Q Consensus 253 ~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l 332 (615)
+++|++|.||..++..+ .. +.+..+++|++++||..++..+ +. +.+
T Consensus 106 ll~D~d~~VR~~aA~~l-------~~--------~~L~~L~~D~d~~VR~~aA~~l-------~~------------~~l 151 (244)
T 1lrv_A 106 LMFDEDREVRITVADRL-------PL--------EQLEQMAADRDYLVRAYVVQRI-------PP------------GRL 151 (244)
T ss_dssp TTTCSCHHHHHHHHHHS-------CT--------GGGGGGTTCSSHHHHHHHHHHS-------CG------------GGG
T ss_pred HHcCCCHHHHHHHHHhC-------CH--------HHHHHHHcCCCHHHHHHHHHhc-------CH------------HHH
Confidence 88999999999988743 11 1355678999999999888742 11 234
Q ss_pred HHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhh
Q psy14014 333 KDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYM 412 (615)
Q Consensus 333 ~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l 412 (615)
..+.+|+++.||..++..+ +. +.+..+++|+++.||..++..+. .
T Consensus 152 ~~l~~D~d~~VR~~aa~~l-------~~--------~ll~~ll~D~d~~VR~aaa~~l~--------------------~ 196 (244)
T 1lrv_A 152 FRFMRDEDRQVRKLVAKRL-------PE--------ESLGLMTQDPEPEVRRIVASRLR--------------------G 196 (244)
T ss_dssp GGTTTCSCHHHHHHHHHHS-------CG--------GGGGGSTTCSSHHHHHHHHHHCC--------------------G
T ss_pred HHHHcCCCHHHHHHHHHcC-------CH--------HHHHHHHcCCCHHHHHHHHHhCC--------------------H
Confidence 4678999999999988762 11 34556788999999999886531 1
Q ss_pred hhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q psy14014 413 PLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLK 492 (615)
Q Consensus 413 ~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~ 492 (615)
+.+..+++|++|.||..++..++ .+.+..+ +|+++.||.++...+|
T Consensus 197 ------------------~~L~~Ll~D~d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 197 ------------------DDLLELLHDPDWTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp ------------------GGGGGGGGCSSHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred ------------------HHHHHHHcCCCHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 34556788999999999999864 1344455 9999999999877654
No 74
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.30 E-value=1.2e-10 Score=105.68 Aligned_cols=189 Identities=12% Similarity=0.118 Sum_probs=144.3
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhch---hhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh---
Q psy14014 167 ELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV---DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS--- 240 (615)
Q Consensus 167 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--- 240 (615)
...+.+..+++++++.+|..++.+|+.++..-.. .......+|.+.++++++++.+|..|+.++..++..-+..
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 3456778888999999999999999999853221 2334568999999999999999999999999987533221
Q ss_pred hHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCcc---chhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccc
Q psy14014 241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPE---ITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDA 317 (615)
Q Consensus 241 ~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 317 (615)
......+|.+..+++++++.+|..++.+++.++...... ......+|.+.+++++.++++|..|+.+|..++..- +
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-~ 170 (210)
T 4db6_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-N 170 (210)
T ss_dssp HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-H
T ss_pred HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-c
Confidence 122347899999999999999999999999987521111 123468999999999999999999999999998742 2
Q ss_pred cchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhch
Q psy14014 318 YNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSP 356 (615)
Q Consensus 318 ~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~ 356 (615)
+.+........+|.+.+++.+.++.+|..++.+|..++.
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 222223344577888888888888888888888887753
No 75
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.28 E-value=1.3e-10 Score=105.62 Aligned_cols=183 Identities=13% Similarity=0.117 Sum_probs=144.0
Q ss_pred HHHHHhhhcCCchHHHHHHHHhHHHHhhhCh---HhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhCh---HHhh
Q psy14014 431 LSIVELAEDSKWRVRLAIIEYMPLLAGQLGV---EFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGS---EWAQ 504 (615)
Q Consensus 431 ~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~ 504 (615)
|.+..+++++++.+|..++..+..++..-.. .......+|.+.+++.+++..+|..|+.+++.++..... ....
T Consensus 15 ~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (210)
T 4db6_A 15 PQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 94 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 6778889999999999999999999743211 223345789999999999999999999999999742111 1122
Q ss_pred hchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChh---hHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhh---
Q psy14014 505 STVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPT---VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET--- 578 (615)
Q Consensus 505 ~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~--- 578 (615)
...+|.+.+++.++++.+|..+++++++++...... ......+|.|.+++.++++.+|..++.+|.+++...+.
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~ 174 (210)
T 4db6_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ 174 (210)
T ss_dssp TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHH
Confidence 448899999999999999999999999998532221 22456899999999999999999999999999865321
Q ss_pred hhHHhhHHHHHhhhcCCCCccHHHHHHHHHHHHhh
Q psy14014 579 NVIQSQVKPALDKLNGDTDVDVKYFAQEAISSIAD 613 (615)
Q Consensus 579 ~~~~~~~~~~l~~l~~d~d~~v~~~a~~a~~~~~~ 613 (615)
........+.+..++.+++.+|++.|..+++.+++
T Consensus 175 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 175 AVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 12344567777778889999999999999998875
No 76
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.24 E-value=3.8e-09 Score=114.13 Aligned_cols=244 Identities=14% Similarity=0.152 Sum_probs=187.0
Q ss_pred hhHHhhhhhhccCCC--hhhHHH---HHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccC-ch
Q psy14014 147 TSACGLFSVCYPRVT--AGVKAE---LRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDE-QD 220 (615)
Q Consensus 147 ~~a~~~l~~~~~~~~--~~~~~~---l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~-~~ 220 (615)
..|+..+..++...+ +..... ++|.++..+.|....||.++..+...+++.+++... ..++|.+...+++. .|
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw 148 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKW 148 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccch
Confidence 444455555553331 122222 346678888999999999999999999999988765 77889888888755 69
Q ss_pred hHHHHHHHHHHHHHhhcChh--hHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcH
Q psy14014 221 SVRLLAVEACVSIASLLSQS--DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEA 298 (615)
Q Consensus 221 ~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~ 298 (615)
..+..|+.++..+++..+.. ...+.++|.+.+++.|.-..|+.++..++..++..+++.. ...++|.+++.+.+++
T Consensus 149 ~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d-~~~~~~~~~~~~~~p~- 226 (986)
T 2iw3_A 149 QEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD-IERFIPSLIQCIADPT- 226 (986)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT-TGGGHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc-hhhhHHHHHHHhcChh-
Confidence 99999999999999887542 3467799999999999999999999999999999888764 4688999999999985
Q ss_pred HHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc----hhhhhhhHHHHHHh
Q psy14014 299 EVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK----HNTVDHLLPLFLSQ 374 (615)
Q Consensus 299 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~----~~~~~~l~p~l~~~ 374 (615)
+|-+ ++..|+.. .+..+- ....+..+.|.|.+.+++....+++.++-.+.++++.+.. ..+.+.++|.+.+.
T Consensus 227 ~~~~-~~~~l~~~--tfv~~v-~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~ 302 (986)
T 2iw3_A 227 EVPE-TVHLLGAT--TFVAEV-TPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSN 302 (986)
T ss_dssp HHHH-HHHHHTTC--CCCSCC-CHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHH
T ss_pred hhHH-HHHHhhcC--eeEeee-cchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHH
Confidence 4433 34444421 111111 1245677899999999999999999999999999998775 34667788888876
Q ss_pred hcC-CChhHHHHHHHhhhHhhhhh
Q psy14014 375 LKD-ECPEVRLNIISNLDCVNEVI 397 (615)
Q Consensus 375 l~d-~~~~vr~~a~~~l~~l~~~~ 397 (615)
... .+|++|..+-+++..+.+..
T Consensus 303 ~~~~~~pe~r~~~~~a~~~l~~~~ 326 (986)
T 2iw3_A 303 FATIADPEAREVTLRALKTLRRVG 326 (986)
T ss_dssp TTTCCSHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHHHHHhh
Confidence 654 67999999999888876554
No 77
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.23 E-value=7.9e-09 Score=111.69 Aligned_cols=298 Identities=15% Similarity=0.206 Sum_probs=208.4
Q ss_pred hHHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcch-hhccchhhhhhhcCCcHHHHHHHHHHhccccCCCCC----cchh
Q psy14014 14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQER-TRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGG----PEYV 88 (615)
Q Consensus 14 ~i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~-~~~~ll~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~----~~~~ 88 (615)
.+..+...+...+...|..+...+......-+... ....++..+...+.+...- ..++..++.+++..+. +.|.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~-~~a~~~~~~~~~~~~~~~~~e~~~ 93 (986)
T 2iw3_A 15 VLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA-ANAMQAVAHIANQSNLSPSVEPYI 93 (986)
T ss_dssp HHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH-HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH-HHHHHHHHHHHHhcCCCCCcccch
Confidence 34555566655455666677777776644221111 1123444555555554432 5566666666644322 3344
Q ss_pred hhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHH
Q psy14014 89 HCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAEL 168 (615)
Q Consensus 89 ~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l 168 (615)
-.++|.+.....|....||.+|..+...+...++++.. ..++|.+
T Consensus 94 ~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~---------------------------------- 138 (986)
T 2iw3_A 94 VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-KALLPHL---------------------------------- 138 (986)
T ss_dssp HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-HHHHHHH----------------------------------
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-HHHHHHH----------------------------------
Confidence 44567777777888888888888888888888877554 4444444
Q ss_pred HHHHHHHhCC-CChHHHHHHHHhHHHHHHHhch--hhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHh
Q psy14014 169 RSHFRNLCQD-DTPMVRRAAAGKLGELAKVVEV--DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQL 245 (615)
Q Consensus 169 ~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 245 (615)
...+.+ .-|..+..++..+..+++..+. ....++++|.+.+.+-|..++|.++|..++..++..+++.++. .
T Consensus 139 ----~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~-~ 213 (986)
T 2iw3_A 139 ----TNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIE-R 213 (986)
T ss_dssp ----HHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTG-G
T ss_pred ----HHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchh-h
Confidence 333333 3699999999999999987644 2346789999999999999999999999999999999987744 4
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHH-hCccc---hhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchh
Q psy14014 246 VMPTLRQCSGDTSWRVRYMVADKFTDLQKA-VGPEI---TKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQE 321 (615)
Q Consensus 246 l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~-~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 321 (615)
.+|.+.+++.+|+. .-+++..++.. |-.++ ...-+.|+|.+.|.+....+++.++-.++.+++.......-
T Consensus 214 ~~~~~~~~~~~p~~-----~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~ 288 (986)
T 2iw3_A 214 FIPSLIQCIADPTE-----VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVI 288 (986)
T ss_dssp GHHHHHHHHHCTTH-----HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred hHHHHHHHhcChhh-----hHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHH
Confidence 78889999998864 33444444421 11111 23468899999999999999999999999999988766656
Q ss_pred HHHHHhhHHHHHHhhC-CCCHHHHHHHHHHHHhhchh
Q psy14014 322 NIIMTYILPYVKDLVA-DPNQHVKSALASVIMGLSPI 357 (615)
Q Consensus 322 ~~~~~~l~p~l~~~~~-d~~~~vR~~~~~~l~~l~~~ 357 (615)
..+++.++|.+.+..+ -.+|.+|..+-.++..+...
T Consensus 289 ~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 289 APFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence 6789999999988654 47899999888888777554
No 78
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=99.22 E-value=8.5e-12 Score=113.49 Aligned_cols=184 Identities=22% Similarity=0.261 Sum_probs=136.3
Q ss_pred HhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcHH-HHHHHHHHhccccCCCCCcchhhhchHHHhhhh
Q psy14014 21 ELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLA 99 (615)
Q Consensus 21 ~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~-vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~ 99 (615)
-+.++++.+|..+.+.+ ++ ..+..+++|+++ ||..++..|+. +.+..++
T Consensus 58 ll~d~~~~VR~~AA~~l-------~~--------~~l~~L~~D~~~~VR~~aA~~L~~---------------~~L~~ll 107 (244)
T 1lrv_A 58 YLADPFWERRAIAVRYS-------PV--------EALTPLIRDSDEVVRRAVAYRLPR---------------EQLSALM 107 (244)
T ss_dssp GTTCSSHHHHHHHHTTS-------CG--------GGGGGGTTCSSHHHHHHHHTTSCS---------------GGGGGTT
T ss_pred HhcCCCHHHHHHHHHhC-------CH--------HHHHHHccCcCHHHHHHHHHHCCH---------------HHHHHHH
Confidence 35889999999999964 22 235667788775 99999865421 3567788
Q ss_pred cCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHHHHHhCCC
Q psy14014 100 TVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDD 179 (615)
Q Consensus 100 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~ 179 (615)
.|+++.||..++..+ +.+ .+..+.+|++..+|..++.-++ . +.+..+.+|+
T Consensus 108 ~D~d~~VR~~aA~~l-------~~~--------~L~~L~~D~d~~VR~~aA~~l~-------~-------~~l~~l~~D~ 158 (244)
T 1lrv_A 108 FDEDREVRITVADRL-------PLE--------QLEQMAADRDYLVRAYVVQRIP-------P-------GRLFRFMRDE 158 (244)
T ss_dssp TCSCHHHHHHHHHHS-------CTG--------GGGGGTTCSSHHHHHHHHHHSC-------G-------GGGGGTTTCS
T ss_pred cCCCHHHHHHHHHhC-------CHH--------HHHHHHcCCCHHHHHHHHHhcC-------H-------HHHHHHHcCC
Confidence 999999999988743 322 3456678889999998887321 1 2345778999
Q ss_pred ChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCCh
Q psy14014 180 TPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSW 259 (615)
Q Consensus 180 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~ 259 (615)
++.||..++..+ +. +.+..+++|+++.||..++..+ +. +.+..+++|++|
T Consensus 159 d~~VR~~aa~~l-------~~--------~ll~~ll~D~d~~VR~aaa~~l-------~~--------~~L~~Ll~D~d~ 208 (244)
T 1lrv_A 159 DRQVRKLVAKRL-------PE--------ESLGLMTQDPEPEVRRIVASRL-------RG--------DDLLELLHDPDW 208 (244)
T ss_dssp CHHHHHHHHHHS-------CG--------GGGGGSTTCSSHHHHHHHHHHC-------CG--------GGGGGGGGCSSH
T ss_pred CHHHHHHHHHcC-------CH--------HHHHHHHcCCCHHHHHHHHHhC-------CH--------HHHHHHHcCCCH
Confidence 999999998852 11 3455788999999999988753 22 456777899999
Q ss_pred HHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHH
Q psy14014 260 RVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVR 309 (615)
Q Consensus 260 ~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 309 (615)
.||..++..++ .+.+..+ +|+++.||.++..+|+
T Consensus 209 ~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 209 TVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp HHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred HHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 99999998754 2456666 9999999999987765
No 79
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.22 E-value=3.2e-08 Score=112.84 Aligned_cols=475 Identities=14% Similarity=0.063 Sum_probs=256.8
Q ss_pred chhhhhhhcCC--cHHHHHHHHHHhccccCCCCCcchhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhH
Q psy14014 53 LIPFLTETIYD--EDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHF 130 (615)
Q Consensus 53 ll~~l~~~~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 130 (615)
+...+....+. ++++|+.|.+.|..+-+. ++.+..+...|. ..+.+..+|..|...+.+.....
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~---p~~~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~~~--------- 78 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEK---CPICVPCGLRLA--EKTQVAIVRHFGLQILEHVVKFR--------- 78 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH---CTTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHS---------
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhC---chHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHh---------
Confidence 44444444443 234777777777665431 223333332222 14456788888888887755321
Q ss_pred HHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHHHHHhC-------CCChHHHHHHHHhHHHHHHHhchhhh
Q psy14014 131 VPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQ-------DDTPMVRRAAAGKLGELAKVVEVDYL 203 (615)
Q Consensus 131 l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~-------d~~~~vR~~a~~~l~~l~~~~~~~~~ 203 (615)
+..++++.+..+...++.++. +..+.||..++.++..+++.-.+ ..
T Consensus 79 --------------------------W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~ 131 (1204)
T 3a6p_A 79 --------------------------WNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QH 131 (1204)
T ss_dssp --------------------------GGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TT
T ss_pred --------------------------cccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-cc
Confidence 011222323333333322221 24688999999999999887544 34
Q ss_pred HhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcCh------hh----------HHHhHHHHHHHhcCC-----------
Q psy14014 204 KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ------SD----------VEQLVMPTLRQCSGD----------- 256 (615)
Q Consensus 204 ~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~------~~----------~~~~l~~~l~~~~~d----------- 256 (615)
|+.+++.+.++++. +...+..++.+|..+++.+.. .. ..+.+++.+.+++.+
T Consensus 132 Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~ 210 (1204)
T 3a6p_A 132 WPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTD 210 (1204)
T ss_dssp CTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 78888888888765 445677888888888764211 00 012344444444432
Q ss_pred --------CChHHHHHHHHHHHHHHHHhCccchh---hhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHH
Q psy14014 257 --------TSWRVRYMVADKFTDLQKAVGPEITK---TDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIM 325 (615)
Q Consensus 257 --------~~~~vR~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 325 (615)
++..++..+.+++.......+..... ..+++.+..++.+ +++|..|+.+|..++..-.+......+.
T Consensus 211 ~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li 288 (1204)
T 3a6p_A 211 TSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLM 288 (1204)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGG
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHH
Confidence 12345666666666554443322211 2478887777764 5789999999999987432111000111
Q ss_pred Hhh----HHHHHHhh--------CCCCHHHHHHHHHHHHhhchhhc----------chhhhhhhHHHHHHhhcCCChhHH
Q psy14014 326 TYI----LPYVKDLV--------ADPNQHVKSALASVIMGLSPILG----------KHNTVDHLLPLFLSQLKDECPEVR 383 (615)
Q Consensus 326 ~~l----~p~l~~~~--------~d~~~~vR~~~~~~l~~l~~~~g----------~~~~~~~l~p~l~~~l~d~~~~vr 383 (615)
..+ +..+.... .+.+..+++.+++.+..++..+. .......+++.+..+..+++..|-
T Consensus 289 ~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs 368 (1204)
T 3a6p_A 289 VLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLR 368 (1204)
T ss_dssp GGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHH
T ss_pred HHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhH
Confidence 111 11222222 23345666677666665543211 122345688999999998888888
Q ss_pred HHHHHhhhHhhhhhc---hhHHHHHHHHHhhhhhh---hhccccchhhhhhhhHHHHHhh-h---------cCCchHHHH
Q psy14014 384 LNIISNLDCVNEVIG---IQQWRVRLAIIEYMPLL---AGQLGVEFFDEKLNALSIVELA-E---------DSKWRVRLA 447 (615)
Q Consensus 384 ~~a~~~l~~l~~~~~---~~~~~~~~~i~~~l~~l---~~~~~~~~~~~~l~~~~i~~~~-~---------~~~~~vr~~ 447 (615)
..++..+..+.+... .+.+... +...++.+ ..+++ |++.-..|. ..+. . ..-|..|..
T Consensus 369 ~~~l~fW~~ll~~~~~~~~~~~~~~--l~~Ll~vl~~~l~k~~---yp~~~~~~~-~~~~~~D~d~~~E~~~~f~~~Rk~ 442 (1204)
T 3a6p_A 369 SSTQMTWGALFRHEILSRDPLLLAI--IPKYLRASMTNLVKMG---FPSKTDSPS-CEYSRFDFDSDEDFNAFFNSSRAQ 442 (1204)
T ss_dssp HHHHHHHHHHHSCTTTTTCHHHHHH--HHHHHHHHHHHHSCCC---CSSCCSSTH-HHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccHHHHHH--HHHHHHHHHHHHHHhc---CccccCCcc-hhhhhcccCCcHHHHHHHHHHHHH
Confidence 888888876665431 1111111 11223333 11221 111000000 0111 0 123567888
Q ss_pred HHHHhHHHHhhhChHhHHHHHHHHHHHhcC-------------------------CcchHHHHHHHHHHHHHHHHhCh--
Q psy14014 448 IIEYMPLLAGQLGVEFFDEKLNALCMTWLV-------------------------DHVYAIREAATLNLKKLVEQFGS-- 500 (615)
Q Consensus 448 ~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-------------------------d~~~~vR~~a~~~l~~l~~~~~~-- 500 (615)
..+.+..++...+.. ..+.+.+.+...+. ++.+...++....+..++..+..
T Consensus 443 ~~d~l~~i~~v~p~~-~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~ 521 (1204)
T 3a6p_A 443 QGEVMRLACRLDPKT-SFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTL 521 (1204)
T ss_dssp HHHHHHHHHHHCHHH-HHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCHHH-HHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence 888887777544322 22233333322221 23455667777777777766511
Q ss_pred --HHhhhchhHHHHhhh---cCCCchHHHHHHHHHHHHHhhhCh-hhHHHhhHHHHHhhCCC------------CCchHH
Q psy14014 501 --EWAQSTVIPKVVAMS---RDQNYLHRMTCLFCINVLAEACGP-TVTANFLLPTVLNMAGD------------NVANVR 562 (615)
Q Consensus 501 --~~~~~~i~~~l~~~~---~d~~~~~R~~a~~~l~~l~~~~~~-~~~~~~i~~~l~~~~~D------------~~~~vr 562 (615)
+.....+.|.+++++ +..+|.+|...+.+++.+.+.... ..+...++..+...+.+ .+.+||
T Consensus 522 e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr 601 (1204)
T 3a6p_A 522 NREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVR 601 (1204)
T ss_dssp CTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHH
Confidence 101112456666643 345888999999999998877542 22334444544444434 344899
Q ss_pred HHHHHHHHHHhHhhhh
Q psy14014 563 FNVAKTLQKIGPILET 578 (615)
Q Consensus 563 ~~a~~~l~~l~~~~~~ 578 (615)
..++.++..++..++.
T Consensus 602 ~~a~~al~~L~~~~~~ 617 (1204)
T 3a6p_A 602 RHACSSIIKMCRDYPQ 617 (1204)
T ss_dssp HHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhhH
Confidence 9999999999987753
No 80
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.21 E-value=1.1e-06 Score=97.34 Aligned_cols=330 Identities=13% Similarity=0.156 Sum_probs=181.6
Q ss_pred HHhHHHHHHHhcC--CCChHHHHHHHHHHHHHHHHhCcc---chhhhHHHHHHHhhcCC-----cHHHHHHHHHHHHHHH
Q psy14014 243 EQLVMPTLRQCSG--DTSWRVRYMVADKFTDLQKAVGPE---ITKTDLVQAFQMLLKDS-----EAEVRAAAANKVRDFC 312 (615)
Q Consensus 243 ~~~l~~~l~~~~~--d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~-----~~~vr~~a~~~l~~~~ 312 (615)
...+.+.+.+.++ ..+|..+.+++.++|.++..+..+ .....+++.+..+.+.+ .+-++...+..++++.
T Consensus 475 ~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~ 554 (1073)
T 3gjx_A 475 EIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYP 554 (1073)
T ss_dssp HHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhH
Confidence 3334455544433 457999999999999998655532 22345666677666544 3456666678899888
Q ss_pred hhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchh----------hhhhhHHHHHHhhcCCChhH
Q psy14014 313 QNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHN----------TVDHLLPLFLSQLKDECPEV 382 (615)
Q Consensus 313 ~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~----------~~~~l~p~l~~~l~d~~~~v 382 (615)
.++... ..+++.++..+.+.+.+.++.|+.+|+.++..+++..+... +.+.++..+.+...+=.+.-
T Consensus 555 ~wl~~h---~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~ 631 (1073)
T 3gjx_A 555 RFLRAH---WKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQ 631 (1073)
T ss_dssp HHHHHC---HHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHH
T ss_pred HHHHhC---HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHH
Confidence 876432 34678888888888999999999999999999987654321 22223322222222222333
Q ss_pred HHHHHHhhhHhhhhhchh----------------HHH-------------------HHH-HHHhhhhhhhhccccchhhh
Q psy14014 383 RLNIISNLDCVNEVIGIQ----------------QWR-------------------VRL-AIIEYMPLLAGQLGVEFFDE 426 (615)
Q Consensus 383 r~~a~~~l~~l~~~~~~~----------------~~~-------------------~~~-~i~~~l~~l~~~~~~~~~~~ 426 (615)
.....++++.++...+.+ .|. +.+ .+.++.+.++..+|..|...
T Consensus 632 ~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~~~ 711 (1073)
T 3gjx_A 632 VHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQ 711 (1073)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchhHHHH
Confidence 333333333333222211 111 111 33444455566677665432
Q ss_pred hhh-hHHHHHh-------h-----h-----cCCch------HHHHHHHHhHHHHhhh-ChHhHHHHHHHHHHHhc-C---
Q psy14014 427 KLN-ALSIVEL-------A-----E-----DSKWR------VRLAIIEYMPLLAGQL-GVEFFDEKLNALCMTWL-V--- 477 (615)
Q Consensus 427 ~l~-~~~i~~~-------~-----~-----~~~~~------vr~~~~~~l~~l~~~~-~~~~~~~~l~~~l~~~l-~--- 477 (615)
.-. -+.+.+. . . .+.+. +|..++..+....... ..+.+...++|.+++.+ .
T Consensus 712 ~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~ 791 (1073)
T 3gjx_A 712 LGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQ 791 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHh
Confidence 110 0111111 0 0 11122 3444445554443322 23344555666555542 2
Q ss_pred CcchHHHH-HHHHHHHHHHHHhChHH------hhhchhHHHHhhhc---CCCchHHHHHHHHHHHHHhhhChhhHH----
Q psy14014 478 DHVYAIRE-AATLNLKKLVEQFGSEW------AQSTVIPKVVAMSR---DQNYLHRMTCLFCINVLAEACGPTVTA---- 543 (615)
Q Consensus 478 d~~~~vR~-~a~~~l~~l~~~~~~~~------~~~~i~~~l~~~~~---d~~~~~R~~a~~~l~~l~~~~~~~~~~---- 543 (615)
...+..|+ ..+.++..+++.+|... ..+.+...-+++++ +..|..|....+.+..+...+....+.
T Consensus 792 ~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~ 871 (1073)
T 3gjx_A 792 RNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPA 871 (1073)
T ss_dssp HSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHH
T ss_pred cCCcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHH
Confidence 11112222 23455555666665431 12233333345565 358899999999999988876554432
Q ss_pred --HhhHHHHHhhCCCCCchHHHHHHHHHHHHhHh
Q psy14014 544 --NFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI 575 (615)
Q Consensus 544 --~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~ 575 (615)
..++..+.-..+...++|-..+.+.+..+...
T Consensus 872 ~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~ 905 (1073)
T 3gjx_A 872 QFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQN 905 (1073)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHH
Confidence 23445555567888999988888888777654
No 81
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.17 E-value=1e-06 Score=97.42 Aligned_cols=139 Identities=9% Similarity=-0.003 Sum_probs=98.0
Q ss_pred CCchHHHHHHHHhHHHHhhhChH---hHHHHHHHHHHHhcCCc-----chHHHHHHHHHHHHHHHHhChH-HhhhchhHH
Q psy14014 440 SKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNALCMTWLVDH-----VYAIREAATLNLKKLVEQFGSE-WAQSTVIPK 510 (615)
Q Consensus 440 ~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~-----~~~vR~~a~~~l~~l~~~~~~~-~~~~~i~~~ 510 (615)
.+|..+++++.+++.++.....+ .+.+.+++.+..+...+ ...++.....++|+..+-+... .+.+.++..
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~ 570 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNK 570 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHH
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHH
Confidence 46999999999999998777642 35566777777665433 3445565667888777655322 144667888
Q ss_pred HHhhhcCCCchHHHHHHHHHHHHHhhhChhh----------HHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhh
Q psy14014 511 VVAMSRDQNYLHRMTCLFCINVLAEACGPTV----------TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET 578 (615)
Q Consensus 511 l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~----------~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~ 578 (615)
+.....+.++.+...|+.++..+++.|+... +.+.++..+.....+=.+.-......+++.++...++
T Consensus 571 L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~ 648 (1073)
T 3gjx_A 571 LFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTD 648 (1073)
T ss_dssp HHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCC
Confidence 8888899999999999999999999887654 2233333334444555666667788888888877653
No 82
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.16 E-value=4.7e-09 Score=102.17 Aligned_cols=255 Identities=11% Similarity=0.025 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhC-----------CCCHHHHHHHHHHHHhhchhhc--chhh--hhh
Q psy14014 302 AAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVA-----------DPNQHVKSALASVIMGLSPILG--KHNT--VDH 366 (615)
Q Consensus 302 ~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~-----------d~~~~vR~~~~~~l~~l~~~~g--~~~~--~~~ 366 (615)
..|+.+|..+... ++.+........+|.|..++. ..++.+|..++++|..++..-. +..+ ...
T Consensus 50 ~~A~~aL~nls~d--~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~G 127 (354)
T 3nmw_A 50 CPAVCVLMKLSFD--EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 127 (354)
T ss_dssp HHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence 3455555555542 232322233334555555442 1346889999999999975322 1122 234
Q ss_pred hHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHh-hhcCCchHH
Q psy14014 367 LLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVEL-AEDSKWRVR 445 (615)
Q Consensus 367 l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~-~~~~~~~vr 445 (615)
.+|.|+++++.++++++..|+.+|..+..... +..+..+.-...+ |.+.++ .++.+..++
T Consensus 128 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~-~~~k~~i~~~G~I------------------p~Lv~lL~~~~~~~~~ 188 (354)
T 3nmw_A 128 CMRALVAQLKSESEDLQQVIASVLRNLSWRAD-VNSKKTLREVGSV------------------KALMECALEVKKESTL 188 (354)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCC-HHHHHHHHHTTHH------------------HHHHHHHHHCCCHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHhccCC-HHHHHHHHHCCCH------------------HHHHHHHhcCCCHHHH
Confidence 69999999999999999999999988754311 1111111000112 566665 466778899
Q ss_pred HHHHHHhHHHHhhh-C-h-HhH-HHHHHHHHHHhcCCcch----HHHHHHHHHHHHHHHHh--ChHH----hhhchhHHH
Q psy14014 446 LAIIEYMPLLAGQL-G-V-EFF-DEKLNALCMTWLVDHVY----AIREAATLNLKKLVEQF--GSEW----AQSTVIPKV 511 (615)
Q Consensus 446 ~~~~~~l~~l~~~~-~-~-~~~-~~~l~~~l~~~l~d~~~----~vR~~a~~~l~~l~~~~--~~~~----~~~~i~~~l 511 (615)
+.++.++..++... + + ... ....+|.+.+++.+... .+++.|..+|..++..+ +++. .....+|.|
T Consensus 189 ~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~L 268 (354)
T 3nmw_A 189 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTL 268 (354)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHH
T ss_pred HHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHH
Confidence 99999998887622 1 1 222 24578888898876543 58999999999998632 2221 113378999
Q ss_pred HhhhcCCCchHHHHHHHHHHHHHhhhCh---hhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhh
Q psy14014 512 VAMSRDQNYLHRMTCLFCINVLAEACGP---TVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE 577 (615)
Q Consensus 512 ~~~~~d~~~~~R~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~ 577 (615)
.+++.+++..++..|+.++.+++..... .......+|.|..++.++++.+|..++.+|..+....+
T Consensus 269 v~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 269 LQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 9999999999999999999999732111 11235678999999999999999999999999987644
No 83
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.10 E-value=1.3e-08 Score=96.18 Aligned_cols=175 Identities=10% Similarity=0.091 Sum_probs=134.8
Q ss_pred HHHHHHHHhHHHHHHHhch--hhhHhhhHHHHHH-hhccCchhHHHHHHHHHHHHHhhcChh---hHHHhHHHHHHHhcC
Q psy14014 182 MVRRAAAGKLGELAKVVEV--DYLKTDIIPMFVN-LAQDEQDSVRLLAVEACVSIASLLSQS---DVEQLVMPTLRQCSG 255 (615)
Q Consensus 182 ~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~-~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~ 255 (615)
+-|..++..|..++..... .......+|.+.. +++++++.+|..|+.+++.++..-+.. ......+|.|.++++
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~ 134 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD 134 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence 5677777788777764432 2233456788888 999999999999999999998754421 122347788888887
Q ss_pred -CCChHHHHHHHHHHHHHHHHhCc---cchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHH
Q psy14014 256 -DTSWRVRYMVADKFTDLQKAVGP---EITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPY 331 (615)
Q Consensus 256 -d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~ 331 (615)
+++..+|..++.+|+.++..... .+.....+|.+..++++.++.++..|+.+|..++.. .++.........++|.
T Consensus 135 ~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 135 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHH
Confidence 56889999999999998864322 122246889999999999999999999999999876 3333333445678999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhhchh
Q psy14014 332 VKDLVADPNQHVKSALASVIMGLSPI 357 (615)
Q Consensus 332 l~~~~~d~~~~vR~~~~~~l~~l~~~ 357 (615)
|..++.+++..+|..++.+++.++..
T Consensus 214 Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 214 LVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 99999999999999999999999865
No 84
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.08 E-value=1.7e-08 Score=95.37 Aligned_cols=182 Identities=9% Similarity=0.059 Sum_probs=137.7
Q ss_pred HHHHH-hhhcCCchHHHHHHHHhHHHHhhhC---hHhHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHhCh---HH
Q psy14014 431 LSIVE-LAEDSKWRVRLAIIEYMPLLAGQLG---VEFFDEKLNALCMTWLV-DHVYAIREAATLNLKKLVEQFGS---EW 502 (615)
Q Consensus 431 ~~i~~-~~~~~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~-d~~~~vR~~a~~~l~~l~~~~~~---~~ 502 (615)
|.+.. ++++++..+|..++.+++.++..-. ........+|.+++++. +++..+|..|+.+++.++....+ .+
T Consensus 84 ~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~ 163 (296)
T 1xqr_A 84 HLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQF 163 (296)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 56677 8889999999999999999986422 12233457888888887 45789999999999999875432 12
Q ss_pred hhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhCh---hhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhh-
Q psy14014 503 AQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGP---TVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET- 578 (615)
Q Consensus 503 ~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~- 578 (615)
.....+|.|..+++++++.+|..++++++.++...+. ......++|.|..++.++++.||..++.+|+.+....+.
T Consensus 164 ~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~ 243 (296)
T 1xqr_A 164 LRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQG 243 (296)
T ss_dssp HHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhH
Confidence 2235889999999999999999999999999865221 123457889999999999999999999999999865321
Q ss_pred --------hhHHhhHHHHHhhhc-CCCCccHHHHHHHHHHHHh
Q psy14014 579 --------NVIQSQVKPALDKLN-GDTDVDVKYFAQEAISSIA 612 (615)
Q Consensus 579 --------~~~~~~~~~~l~~l~-~d~d~~v~~~a~~a~~~~~ 612 (615)
..+...+.+..+.+. ++...++.++|...++.+-
T Consensus 244 ~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 244 VRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp HHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence 123345556666665 4446899999998887763
No 85
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.04 E-value=1.6e-07 Score=77.54 Aligned_cols=214 Identities=16% Similarity=0.163 Sum_probs=151.7
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHh-hccCchhHHHHHHHHHHHHHhhcChhhHHH
Q psy14014 166 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNL-AQDEQDSVRLLAVEACVSIASLLSQSDVEQ 244 (615)
Q Consensus 166 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~-~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 244 (615)
++++..++.++.|.-|.|+++++..+..+++..+.- ...++.-+..+ -+++.-..-.....+++.++..-|+ ...
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el--~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe--~v~ 106 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDL--YEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE--LVK 106 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGG--HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH--HHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHH--HHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH--HHH
Confidence 456777788899999999999999999998865532 22233333333 3455555555566777777765443 244
Q ss_pred hHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHH
Q psy14014 245 LVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENII 324 (615)
Q Consensus 245 ~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 324 (615)
.++|.+..-..-.+++.|......|+.++...+.- ...+..-+..++.+++..=|..|+..++.+..+-. .+
T Consensus 107 ~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l--~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~------~y 178 (253)
T 2db0_A 107 SMIPVLFANYRIGDEKTKINVSYALEEIAKANPML--MASIVRDFMSMLSSKNREDKLTALNFIEAMGENSF------KY 178 (253)
T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH--HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTH------HH
T ss_pred hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHH--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCc------cc
Confidence 57888877666668999999999999999864321 23344456678889998888888888887665422 35
Q ss_pred HHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhh
Q psy14014 325 MTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN 394 (615)
Q Consensus 325 ~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~ 394 (615)
...++|.+..++.|.+.-||.++.+++..++..-.+ .-.++...++-++|.++-|....-.+|+.+.
T Consensus 179 v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk---lRkii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 179 VNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK---LRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH---HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH---HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 778899999999999999999999999999875322 1223333445567888888888777777653
No 86
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.04 E-value=2.7e-08 Score=96.79 Aligned_cols=222 Identities=13% Similarity=0.098 Sum_probs=151.1
Q ss_pred ChHHHHHHHHHHHHHHHHhC-c-cch--hhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHH
Q psy14014 258 SWRVRYMVADKFTDLQKAVG-P-EIT--KTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVK 333 (615)
Q Consensus 258 ~~~vR~~~~~~l~~l~~~~~-~-~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~ 333 (615)
+..+|..++.+|..++..-. . ... ...++|.|.+++++.+++++..|+.+|..+...-..+.+........+|.|.
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 45688888888888864211 0 111 2346999999999999999999999999987631122222233345788888
Q ss_pred Hh-hCCCCHHHHHHHHHHHHhhchhh-c-chhh--hhhhHHHHHHhhcCCCh----hHHHHHHHhhhHhhhhh-chhHHH
Q psy14014 334 DL-VADPNQHVKSALASVIMGLSPIL-G-KHNT--VDHLLPLFLSQLKDECP----EVRLNIISNLDCVNEVI-GIQQWR 403 (615)
Q Consensus 334 ~~-~~d~~~~vR~~~~~~l~~l~~~~-g-~~~~--~~~l~p~l~~~l~d~~~----~vr~~a~~~l~~l~~~~-~~~~~~ 403 (615)
++ ....++.+++.++.++..++... + +..+ ....+|.+.+++.+.++ +++..+..+|..+...+ +.+..+
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~ 256 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 256 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 86 56778999999999999987622 1 2222 24678999999986543 58998888888776421 222222
Q ss_pred HHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhC--h-HhHHHHHHHHHHHhcCCcc
Q psy14014 404 VRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLG--V-EFFDEKLNALCMTWLVDHV 480 (615)
Q Consensus 404 ~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~--~-~~~~~~l~~~l~~~l~d~~ 480 (615)
+.+.-...+ |.+.+++++.+..++..++.++..++..-. . .......+|.+.+++.+.+
T Consensus 257 ~~i~~~g~i------------------~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~ 318 (354)
T 3nmw_A 257 QILRENNCL------------------QTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH 318 (354)
T ss_dssp HHHHTTTHH------------------HHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSS
T ss_pred HHHHHcCCH------------------HHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCC
Confidence 221000012 677888888888899999999988863211 1 1122346788888888888
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy14014 481 YAIREAATLNLKKLVEQ 497 (615)
Q Consensus 481 ~~vR~~a~~~l~~l~~~ 497 (615)
..+|+.|..++..++..
T Consensus 319 ~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 319 KMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 88899999988888875
No 87
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=99.04 E-value=1.4e-08 Score=92.69 Aligned_cols=135 Identities=15% Similarity=0.139 Sum_probs=114.9
Q ss_pred cCCchHHHHHHHHhHHHHhhhChH---h--H-HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHH
Q psy14014 439 DSKWRVRLAIIEYMPLLAGQLGVE---F--F-DEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVV 512 (615)
Q Consensus 439 ~~~~~vr~~~~~~l~~l~~~~~~~---~--~-~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~ 512 (615)
|.|..+-..+++.+..+...++.. + + ...++|.+..-+.|+...||+.+-.++..+...+++. .+.+.+.
T Consensus 98 d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~----~v~~~l~ 173 (266)
T 2of3_A 98 ETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL----KMTPMLL 173 (266)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH----HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH----HHHHHHH
Confidence 788889999999998887766432 1 1 3678999999999999999999999999988876654 5778888
Q ss_pred hhhcCCCchHHHHHHHHHHHHHhhhChhhHHHhhH---HHHHhhCCCCCchHHHHHHHHHHHHhHhhhhh
Q psy14014 513 AMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLL---PTVLNMAGDNVANVRFNVAKTLQKIGPILETN 579 (615)
Q Consensus 513 ~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~---~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~ 579 (615)
+.+++.|+++|..++..++.+.+..|... ...+ |.+.++++|+|.+||..|..++..+....|..
T Consensus 174 ~g~ksKN~R~R~e~l~~l~~li~~~G~~~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 174 DALKSKNARQRSECLLVIEYYITNAGISP--LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ 241 (266)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHHHCSGG--GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHccCCHHHHHHHHHHHHHHHHhcCCCc--cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 88999999999999999999999988762 4467 99999999999999999999999998877643
No 88
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.02 E-value=1.4e-08 Score=97.36 Aligned_cols=278 Identities=11% Similarity=0.052 Sum_probs=112.2
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHH
Q psy14014 246 VMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIM 325 (615)
Q Consensus 246 l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 325 (615)
+++.+.+++..++...|+.+.-.+..++.. ..+. --....+.+=++|+++-+|..|+++++.+... .+.
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~--iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--------~m~ 137 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDV--IIVTSSLTKDMTGKEDSYRGPAVRALCQITDS--------TML 137 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCG--GGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--------TTH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHH--HHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--------HHH
Confidence 344444445555555555555444444332 1111 12334445555566666666666666655431 134
Q ss_pred HhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHH
Q psy14014 326 TYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVR 405 (615)
Q Consensus 326 ~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 405 (615)
+.+.+++.+.+.|.++.||.+|+-+...+..... ...+.+++.+.+++.|+++.|..+|+..+..+.+.-+ ..
T Consensus 138 ~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p--e~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~-~a---- 210 (355)
T 3tjz_B 138 QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF--DVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR-LA---- 210 (355)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH--HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH-HH----
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH--HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch-HH----
Confidence 4555666666666666666666665555443211 1233455666666666677776666666655533110 00
Q ss_pred HHHHhhhhhhhhccccchhhhhhhhHHHHHhhhc-CCchHHHHHHHHhHHHHhhhChH---hHHHHHHHHHHHhcCCcch
Q psy14014 406 LAIIEYMPLLAGQLGVEFFDEKLNALSIVELAED-SKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNALCMTWLVDHVY 481 (615)
Q Consensus 406 ~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~ 481 (615)
+...++ .+.+. .- ..| . -+..+..+. .++++ .....+++.+...+++.+.
T Consensus 211 --~~kLv~------------------~l~~~-~l~~~~-~---q~~llr~l~-~~~~~d~~~~~~~~~~~l~~~L~~~~~ 264 (355)
T 3tjz_B 211 --VSKMIS------------------KFTRH-GLKSPF-A---YCMMIRVAS-RQLEDEDGSRDSPLFDFIESCLRNKHE 264 (355)
T ss_dssp --HHHHHH------------------HHHSS-CCSCHH-H---HHHHHHHHT-CC-----------------CCCCCSSH
T ss_pred --HHHHHH------------------HHhcC-CCcChH-H---HHHHHHHHH-HhccccchhhHHHHHHHHHHHHcCCCh
Confidence 000111 10000 00 011 1 111121111 12211 1234677778888888899
Q ss_pred HHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchH
Q psy14014 482 AIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANV 561 (615)
Q Consensus 482 ~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~v 561 (615)
.|--.|+.++..+.. .+.. ......+.+..++.++++.+|..++..+..+....+.. ....-..++.+++|++..+
T Consensus 265 aVvyEa~k~I~~l~~-~~~~-~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~--v~~~n~~ie~li~d~n~sI 340 (355)
T 3tjz_B 265 MVVYEAASAIVNLPG-CSAK-ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSA--VTACNLDLENLVTDANRSI 340 (355)
T ss_dssp HHHHHHHHHHTC-------------CCCTHHHHHHSSSSSSHHHHHHCC-------------------------------
T ss_pred HHHHHHHHHHHhccC-CCHH-HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHH--HHHHHHHHHHHccCCcHhH
Confidence 998888888877654 2222 22334566777788888899999999999988654432 2345566788899999988
Q ss_pred HHHHHHHHHH
Q psy14014 562 RFNVAKTLQK 571 (615)
Q Consensus 562 r~~a~~~l~~ 571 (615)
+-.|..+|-.
T Consensus 341 ~t~Aittllk 350 (355)
T 3tjz_B 341 ATLAITTLLK 350 (355)
T ss_dssp ----------
T ss_pred HHHHHHHhhh
Confidence 8877776643
No 89
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.02 E-value=1.1e-08 Score=98.10 Aligned_cols=291 Identities=15% Similarity=0.046 Sum_probs=163.3
Q ss_pred CChhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcCh
Q psy14014 160 VTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ 239 (615)
Q Consensus 160 ~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~ 239 (615)
+++.....++....++++.++...|+.+--.+..+++. +++ .. ...+.+.+=++|+++-+|..|+.++..+..
T Consensus 61 f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e-~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~---- 133 (355)
T 3tjz_B 61 LGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AED-VI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD---- 133 (355)
T ss_dssp CCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSC-GG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC----
T ss_pred CchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHH-HH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC----
Confidence 34444556777778899999999999999999888775 223 22 566778888889999999999999887632
Q ss_pred hhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccc
Q psy14014 240 SDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYN 319 (615)
Q Consensus 240 ~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 319 (615)
....+.+.+.+.+.+.|.++.||++|+-+...+....++ ....+++.+.+++.|.++-|..+|+..+..+...-.
T Consensus 134 ~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe--~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~--- 208 (355)
T 3tjz_B 134 STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD--VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR--- 208 (355)
T ss_dssp TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH--HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH---
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch---
Confidence 345677899999999999999999999998877654322 234678888899999999999999988888876310
Q ss_pred hhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhch
Q psy14014 320 QENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGI 399 (615)
Q Consensus 320 ~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 399 (615)
.....+++.+.+. .-.++......+..+..++..- .......+.+.+.+++++.++.|...|++++..+.. .+.
T Consensus 209 ---~a~~kLv~~l~~~-~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~ 282 (355)
T 3tjz_B 209 ---LAVSKMISKFTRH-GLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSA 282 (355)
T ss_dssp ---HHHHHHHHHHHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC-------
T ss_pred ---HHHHHHHHHHhcC-CCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCH
Confidence 1233344443321 1123444444555544443311 012345678888899999999999999998876533 111
Q ss_pred hHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCc
Q psy14014 400 QQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDH 479 (615)
Q Consensus 400 ~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~ 479 (615)
.... ... ..+..++.+++..+|..++..+..+....+.- ....-.-+.+++.|+
T Consensus 283 ~~~~------~a~------------------~~L~~fLss~d~niryvaLr~L~~l~~~~P~~--v~~~n~~ie~li~d~ 336 (355)
T 3tjz_B 283 KELA------PAV------------------SVLQLFCSSPKAALRYAAVRTLNKVAMKHPSA--VTACNLDLENLVTDA 336 (355)
T ss_dssp -----------CC------------------CTHHHHHHSSSSSSHHHHHHCC---------------------------
T ss_pred HHHH------HHH------------------HHHHHHHcCCCchHHHHHHHHHHHHHHHCcHH--HHHHHHHHHHHccCC
Confidence 1000 001 34556677788889999999999887644332 122333466788999
Q ss_pred chHHHHHHHHHHHHH
Q psy14014 480 VYAIREAATLNLKKL 494 (615)
Q Consensus 480 ~~~vR~~a~~~l~~l 494 (615)
+..++..|+.++-+-
T Consensus 337 n~sI~t~Aittllkt 351 (355)
T 3tjz_B 337 NRSIATLAITTLLKT 351 (355)
T ss_dssp ---------------
T ss_pred cHhHHHHHHHHhhhc
Confidence 999988888776443
No 90
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.00 E-value=2.9e-07 Score=76.07 Aligned_cols=215 Identities=16% Similarity=0.186 Sum_probs=148.9
Q ss_pred hhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHh-hhcCCc
Q psy14014 364 VDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVEL-AEDSKW 442 (615)
Q Consensus 364 ~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~-~~~~~~ 442 (615)
-..++..+.+.+.|.-|.|+.+|+..+..+.+..++- ...- + ..+..+ -++...
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el-~epl------~------------------~kL~vm~~ksEaI 84 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDL-YEPM------L------------------KKLFSLLKKSEAI 84 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGG-HHHH------H------------------HHHHHHHHHCCSH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHH-HHHH------H------------------HHHHHHHhhcccC
Confidence 3457778888899988999999998888776654421 1100 0 112222 234444
Q ss_pred hHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcCCCchH
Q psy14014 443 RVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLH 522 (615)
Q Consensus 443 ~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~ 522 (615)
..-+.....++.++.. .++ ....++|.++.-..-.....|..-..+++.+... +++ ....+...+..++.+++...
T Consensus 85 pltqeIa~a~G~la~i-~Pe-~v~~vVp~lfanyrigd~kikIn~~yaLeeIara-nP~-l~~~v~rdi~smltskd~~D 160 (253)
T 2db0_A 85 PLTQEIAKAFGQMAKE-KPE-LVKSMIPVLFANYRIGDEKTKINVSYALEEIAKA-NPM-LMASIVRDFMSMLSSKNRED 160 (253)
T ss_dssp HHHHHHHHHHHHHHHH-CHH-HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHH-CHH-HHHHHHHHHHHHTSCSSHHH
T ss_pred chHHHHHHHHhHHHHh-CHH-HHHhhHHHHHHHHhcCCccceecHHHHHHHHHHh-ChH-HHHHHHHHHHHHhcCCChHH
Confidence 4445666677766542 222 2345788888877666788888999999999876 333 22346667777888999888
Q ss_pred HHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHHHHHhhhcCCCCccHHH
Q psy14014 523 RMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKY 602 (615)
Q Consensus 523 R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~d~~v~~ 602 (615)
|..++..++.+++... . +..-.+|-+..++.|.+.-||..+..+|..+....+ .+...+...++++ +|.-..|..
T Consensus 161 kl~aLnFi~alGen~~-~-yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~np--klRkii~~kl~e~-~D~S~lv~~ 235 (253)
T 2db0_A 161 KLTALNFIEAMGENSF-K-YVNPFLPRIINLLHDGDEIVRASAVEALVHLATLND--KLRKVVIKRLEEL-NDTSSLVNK 235 (253)
T ss_dssp HHHHHHHHHTCCTTTH-H-HHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH--HHHHHHHHHHHHC-CCSCHHHHH
T ss_pred HHHHHHHHHHHhccCc-c-ccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCH--HHHHHHHHHHHHh-cCcHHHHHH
Confidence 9999888888875421 2 234467888888999999999999999999876543 2445555666665 888899999
Q ss_pred HHHHHHHHHh
Q psy14014 603 FAQEAISSIA 612 (615)
Q Consensus 603 ~a~~a~~~~~ 612 (615)
...++++.++
T Consensus 236 ~V~egL~rl~ 245 (253)
T 2db0_A 236 TVKEGISRLL 245 (253)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 91
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.93 E-value=2.6e-08 Score=94.38 Aligned_cols=145 Identities=16% Similarity=0.073 Sum_probs=113.5
Q ss_pred HHHHHhhhcCCchHHHHHHHHhHHHHhhhChHh--------HHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHHhChH
Q psy14014 431 LSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEF--------FDEKLNALCMTW-LVDHVYAIREAATLNLKKLVEQFGSE 501 (615)
Q Consensus 431 ~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~--------~~~~l~~~l~~~-l~d~~~~vR~~a~~~l~~l~~~~~~~ 501 (615)
+.+...+.|.|..+...+++++..++..+|... +...++|.++.- +.|....+|..+..++..++...+..
T Consensus 58 ~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~ 137 (278)
T 4ffb_C 58 TLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI 137 (278)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH
Confidence 456677889999999999999999998765421 235577777754 88999999999999998887655432
Q ss_pred HhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhh-----HHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhh
Q psy14014 502 WAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTV-----TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPIL 576 (615)
Q Consensus 502 ~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~-----~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~ 576 (615)
..++..+...+++.+|.+|..++.++..+...+|... ....+++.+.+++.|++++||..+..++..+...+
T Consensus 138 ---~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 138 ---TQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp ---HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred ---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 3466778888999999999999999999988876543 23456677788899999999999999999998877
Q ss_pred hh
Q psy14014 577 ET 578 (615)
Q Consensus 577 ~~ 578 (615)
|.
T Consensus 215 G~ 216 (278)
T 4ffb_C 215 GN 216 (278)
T ss_dssp --
T ss_pred Cc
Confidence 63
No 92
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.93 E-value=1e-08 Score=99.99 Aligned_cols=255 Identities=13% Similarity=0.090 Sum_probs=167.5
Q ss_pred HHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHH
Q psy14014 168 LRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVM 247 (615)
Q Consensus 168 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 247 (615)
+.+.+..-+-|+.|++|..|+-+|.++.+..+...... -..+.+-.+|-.++-++..++.++++.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~--------~~~N~DLAvRLLCVLALDRFGDYVSDq------- 239 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ--------IRVDSKLFSKIYEILVTDKFNDFVDDR------- 239 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC--------CCCCTTHHHHHHHHHHHBCCBBCSSSS-------
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee--------ccccHHHHHHHHHHHHhccccccccCe-------
Confidence 55566666789999999999999999998876432111 011224456666666665555444332
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHh
Q psy14014 248 PTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTY 327 (615)
Q Consensus 248 ~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~ 327 (615)
.-..||++++++||.+ ..++.+ ..++..+...+..+.|+||.+++-.|..+...+.. .+.
T Consensus 240 ---------VVAPVRETaAQtLGaL-~hLp~e---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~-------Ld~ 299 (800)
T 3oc3_A 240 ---------TVAPVRDAAAYLLSRI-YPLIGP---NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED-------KDG 299 (800)
T ss_dssp ---------CBCHHHHHHHHHHHHH-TTTSCS---CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC-------HHH
T ss_pred ---------eeeehHHHHHHHHHHH-HhCChh---HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH-------HHH
Confidence 2357999999999999 777665 34555555566888999999999999877222211 577
Q ss_pred hHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCCh--hHHHHHHHhhhHhhhhhchhHHHHH
Q psy14014 328 ILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECP--EVRLNIISNLDCVNEVIGIQQWRVR 405 (615)
Q Consensus 328 l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~~ 405 (615)
++|.+...++|.+.+||..++.+|..++ .....+.++..+..+|.+-++ .--......|+.+...-..
T Consensus 300 Vv~aVL~GL~D~DDDVRAVAAetLiPIA----~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~------ 369 (800)
T 3oc3_A 300 LCRKLVSLLSSPDEDIKLLSAELLCHFP----ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE------ 369 (800)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHTTSC----CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT------
T ss_pred HHHHHHhhcCCcccHHHHHHHHHhhhhc----chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc------
Confidence 8888889999999999999999998887 223345566667666654211 1122222233333221100
Q ss_pred HHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHH-hcCCcchHHH
Q psy14014 406 LAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMT-WLVDHVYAIR 484 (615)
Q Consensus 406 ~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~-~l~d~~~~vR 484 (615)
+. -. ..+. |.+..+++++-..||.++++++..+. ...++..+++ .+-+++.+++
T Consensus 370 ----------a~-----~d-p~LV-PRL~PFLRHtITSVR~AVL~TL~tfL--------~~~~LRLIFQNILLE~neeIl 424 (800)
T 3oc3_A 370 ----------LS-----IP-PERL-KDIFPCFTSPVPEVRTSILNMVKNLS--------EESIDFLVAEVVLIEEKDEIR 424 (800)
T ss_dssp ----------CC-----CC-SGGG-GGTGGGGTCSSHHHHHHHHHHTTTCC--------CHHHHHHHHHHHHHCSCHHHH
T ss_pred ----------cc-----cC-hHHH-HHHHhhhcCCcHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHhCCcHHHH
Confidence 00 00 0122 67777888999999999999987764 2345666655 5678889999
Q ss_pred HHHHHHHH
Q psy14014 485 EAATLNLK 492 (615)
Q Consensus 485 ~~a~~~l~ 492 (615)
..+...+.
T Consensus 425 ~lS~~VWk 432 (800)
T 3oc3_A 425 EMAIKLLK 432 (800)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999885
No 93
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.92 E-value=2.4e-07 Score=84.48 Aligned_cols=136 Identities=11% Similarity=0.092 Sum_probs=115.1
Q ss_pred CCCChHHHHHHHHhHHHHHHHhch------hhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHH
Q psy14014 177 QDDTPMVRRAAAGKLGELAKVVEV------DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTL 250 (615)
Q Consensus 177 ~d~~~~vR~~a~~~l~~l~~~~~~------~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l 250 (615)
.|.++.|-..+++.+..+...+.. +.....++|.+.+-+.|..+.||..+...+..+....++. .+++.+
T Consensus 97 ~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~----~v~~~l 172 (266)
T 2of3_A 97 FETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL----KMTPML 172 (266)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH----HHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH----HHHHHH
Confidence 478999999999999888766543 2224678999999999999999999999998888776654 377778
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHH---HHHHHhhcCCcHHHHHHHHHHHHHHHhhcccc
Q psy14014 251 RQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLV---QAFQMLLKDSEAEVRAAAANKVRDFCQNLDAY 318 (615)
Q Consensus 251 ~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~---~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 318 (615)
.+.+.+.+|++|..++..++.+...+|.. ....+ |.+.+++.|.+.+||.+|+.++..+....+..
T Consensus 173 ~~g~ksKN~R~R~e~l~~l~~li~~~G~~--~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 173 LDALKSKNARQRSECLLVIEYYITNAGIS--PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ 241 (266)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHHHCSG--GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHhcCCC--ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 88889999999999999999999999876 35677 99999999999999999999999988876543
No 94
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=98.92 E-value=4e-06 Score=95.63 Aligned_cols=446 Identities=9% Similarity=0.001 Sum_probs=250.2
Q ss_pred ccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcCCcHHHHHHHHHHhccccCCCCC-----c-----------chh
Q psy14014 25 EDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGG-----P-----------EYV 88 (615)
Q Consensus 25 ~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~-----~-----------~~~ 88 (615)
+++.+|......+..+++.-.++ .|+.+++.+.++++.+...+..+...|..+.+.+.. . +..
T Consensus 108 ~~~~vr~kla~~la~Ia~~d~p~-~Wp~ll~~L~~~~~~~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~ 186 (1204)
T 3a6p_A 108 EENHIKDALSRIVVEMIKREWPQ-HWPDMLIELDTLSKQGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNM 186 (1204)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSTT-TCTTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTH
T ss_pred ccHHHHHHHHHHHHHHHHHhCcc-cchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHH
Confidence 46789999999999999987675 789999999888766544555555555555431100 0 112
Q ss_pred hhchHHHhhhhcC-------------------chhHHHHHHHHHHHHHHhhcChhHHhh---hHHHHHHHhhcCCCcchh
Q psy14014 89 HCLLPPLESLATV-------------------EETVVRDKAVESLRLISAQHSPHDLEA---HFVPLVQRLASGDWFTSR 146 (615)
Q Consensus 89 ~~l~~~l~~l~~~-------------------~~~~vr~~a~~~l~~l~~~~~~~~~~~---~~l~~l~~l~~~~~~~~r 146 (615)
+.+++.+.+++.+ ++..++..+++++.....+.+...+.+ .+++.+..+..+ ...|
T Consensus 187 ~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr 264 (1204)
T 3a6p_A 187 ERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQ 264 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHH
Confidence 2444444444332 234577888888888888877655433 388888877664 4678
Q ss_pred hhHHhhhhhhccCCC-hhhH--------HHHHHHHHHHh--------CCCChHHHHHHHHhHHHHHHHhch---------
Q psy14014 147 TSACGLFSVCYPRVT-AGVK--------AELRSHFRNLC--------QDDTPMVRRAAAGKLGELAKVVEV--------- 200 (615)
Q Consensus 147 ~~a~~~l~~~~~~~~-~~~~--------~~l~~~l~~l~--------~d~~~~vR~~a~~~l~~l~~~~~~--------- 200 (615)
..|+.++..++..-. .... ...+..+.... .+.+.++++..++.+..++.....
T Consensus 265 ~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~ 344 (1204)
T 3a6p_A 265 LGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVE 344 (1204)
T ss_dssp HHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 889988888776432 2111 11111222222 233567888888888777643321
Q ss_pred -hhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcC--h-h---hHHHhHHHHHHH---hc---C------------
Q psy14014 201 -DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLS--Q-S---DVEQLVMPTLRQ---CS---G------------ 255 (615)
Q Consensus 201 -~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--~-~---~~~~~l~~~l~~---~~---~------------ 255 (615)
......+++.+..++.+++..|...++..|..+.+... . + .+.+.+++.+.. -. .
T Consensus 345 ~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~ 424 (1204)
T 3a6p_A 345 TPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRF 424 (1204)
T ss_dssp CCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhc
Confidence 12245788999999999999999999999998877642 2 1 233345555511 11 1
Q ss_pred --CC-------ChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcC-------------------------CcHHHH
Q psy14014 256 --DT-------SWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKD-------------------------SEAEVR 301 (615)
Q Consensus 256 --d~-------~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-------------------------~~~~vr 301 (615)
|. -+..|+.....+..++...+.. ....+.+.+...+.+ +.+...
T Consensus 425 D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~-~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 503 (1204)
T 3a6p_A 425 DFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKT-SFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQW 503 (1204)
T ss_dssp HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHH
Confidence 00 0356777777776666544321 122333444333322 112234
Q ss_pred HHHHHHHHHHHhhccc----cchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcc-hhhhhhhHHHHHHhhc
Q psy14014 302 AAAANKVRDFCQNLDA----YNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK-HNTVDHLLPLFLSQLK 376 (615)
Q Consensus 302 ~~a~~~l~~~~~~~~~----~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~-~~~~~~l~p~l~~~l~ 376 (615)
++....++.++..+.. +.....+.+.+++.+..+ +..++.+|...+..++.+...+.. ..+.+.++..+...+.
T Consensus 504 ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~-~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~ 582 (1204)
T 3a6p_A 504 EAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNF-DTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVT 582 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHC-CCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhC-CCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhc
Confidence 4445555555544311 100011233344432221 446889999999999888887653 3344455555555554
Q ss_pred C------------CChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCC---
Q psy14014 377 D------------ECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSK--- 441 (615)
Q Consensus 377 d------------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~--- 441 (615)
+ .+.+||..|..++..+.+..+.. + ..+++.+. ..+...+....
T Consensus 583 ~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~-----L--~p~~~~i~--------------~~~~~~l~~~~~l~ 641 (1204)
T 3a6p_A 583 FETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQL-----V--LPNFDMLY--------------NHVKQLLSNELLLT 641 (1204)
T ss_dssp CCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHH-----H--GGGHHHHH--------------HHHHHHHHSTTTSC
T ss_pred cCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHH-----H--HHHHHHHH--------------HHHHHHHhCccccc
Confidence 4 23478999999888877654321 1 11121111 22333333222
Q ss_pred chHHHHHHHHhHHHHhhhChHh----HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhC
Q psy14014 442 WRVRLAIIEYMPLLAGQLGVEF----FDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFG 499 (615)
Q Consensus 442 ~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~ 499 (615)
..-+....+++..++..+++.. +...+++.+.+...++.+. . ++.....++..+|
T Consensus 642 ~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~~~~~--~-~~s~~~~f~~~~G 700 (1204)
T 3a6p_A 642 QMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLSQDMH--R-VLSDVDAFIAYVG 700 (1204)
T ss_dssp HHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSCHHHH--H-HHHCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHccHHHH--H-hhcCHHHHHHHhC
Confidence 3445566777777766655432 2345566666656554432 2 3444444555554
No 95
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.90 E-value=9e-07 Score=76.76 Aligned_cols=183 Identities=16% Similarity=0.111 Sum_probs=152.0
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhch---hhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcCh-hhH
Q psy14014 167 ELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV---DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ-SDV 242 (615)
Q Consensus 167 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~~~ 242 (615)
+.+..+..++.|.++.++..++.++..+.+..+. ......++|-+..+++++++.|.-.|+.++..+.+..+- +..
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 3566778888999999999999999999998643 334678999999999999999999999999999998874 334
Q ss_pred HHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhH
Q psy14014 243 EQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQEN 322 (615)
Q Consensus 243 ~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 322 (615)
...+...+.....+++.-.+..+++.+|.+- .-.....+...+..+++..+++++.+|+.++..++......
T Consensus 113 y~Kl~~aL~dlik~~~~il~~eaae~Lgklk----v~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~---- 184 (265)
T 3b2a_A 113 FLKAAKTLVSLLESPDDMMRIETIDVLSKLQ----PLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS---- 184 (265)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHCC----BSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC----
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHhCcCC----cccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH----
Confidence 5668888999999999999999999999982 11124578899999999999999999999999998865432
Q ss_pred HHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchh
Q psy14014 323 IIMTYILPYVKDLVADPNQHVKSALASVIMGLSPI 357 (615)
Q Consensus 323 ~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~ 357 (615)
.+++.++.-+..+++.+++.++.-++.++..+...
T Consensus 185 ~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 185 GHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp CCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 23566777788899999999999999998887654
No 96
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.88 E-value=1.4e-07 Score=89.37 Aligned_cols=186 Identities=16% Similarity=0.102 Sum_probs=141.3
Q ss_pred HHHhCCCChHHHHHHHHhHHHHHHHhchhh-------hHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh-----
Q psy14014 173 RNLCQDDTPMVRRAAAGKLGELAKVVEVDY-------LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS----- 240 (615)
Q Consensus 173 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~-------~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~----- 240 (615)
..-+.+.+|..|..+.+.+..+........ ....+.+.+...++|.+..|...+++++..++...+..
T Consensus 15 ~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~ 94 (278)
T 4ffb_C 15 EERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNA 94 (278)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHH
T ss_pred HHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 456789999999999999888776543221 13346677888889999999999999999999877643
Q ss_pred ---hHHHhHHHHHHH-hcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcc
Q psy14014 241 ---DVEQLVMPTLRQ-CSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLD 316 (615)
Q Consensus 241 ---~~~~~l~~~l~~-~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 316 (615)
.....++|.+.+ ++.|+...+|..+..++..++..... ...+++.+...+++.+|.+|..++..|..++..++
T Consensus 95 ~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~---~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg 171 (278)
T 4ffb_C 95 HNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS---ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFG 171 (278)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS---SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhC
Confidence 123446666654 58899999999999988887764332 24677888889999999999999999999998776
Q ss_pred ccch-hHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcch
Q psy14014 317 AYNQ-ENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKH 361 (615)
Q Consensus 317 ~~~~-~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~ 361 (615)
.... .......+++.+..+++|.++.||.++...+..+-..+|..
T Consensus 172 ~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 172 LTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp TTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred CCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 4422 12346678888999999999999999999999998888853
No 97
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=98.87 E-value=4.4e-08 Score=86.03 Aligned_cols=139 Identities=20% Similarity=0.250 Sum_probs=113.3
Q ss_pred HhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHH-hcCCCChHHHHHHHHHHHHHHHHhCccchh
Q psy14014 204 KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQ-CSGDTSWRVRYMVADKFTDLQKAVGPEITK 282 (615)
Q Consensus 204 ~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~ 282 (615)
.+.+++++..+.+++..+||..|+..++.. . ..+.+++.+.. +..|++|+||+.++..++.++...+.
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p---- 137 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY---- 137 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT----
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH----
Confidence 567899999999999999999999987766 2 13558888887 88999999999999999999875443
Q ss_pred hhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchh
Q psy14014 283 TDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPI 357 (615)
Q Consensus 283 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~ 357 (615)
+..++.+...++|++..||..|+..+-.++.. +.. ..-.+.++|.+..+..|++..||.+++++|..+++.
T Consensus 138 e~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~---k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 138 KKALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYF---KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp TTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTT---TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chh---hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 34778899999999999999999887544432 111 122466899999999999999999999999988764
No 98
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.84 E-value=6.5e-10 Score=92.02 Aligned_cols=120 Identities=17% Similarity=0.171 Sum_probs=75.0
Q ss_pred hhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhh
Q psy14014 205 TDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTD 284 (615)
Q Consensus 205 ~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~ 284 (615)
..-.+.+..+++|+++.+|..|+.+++.+. .. . ++.+.+.++|+++.||..++.+++.+.. ..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~----~~----~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~~ 73 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMG----DE----A-FEPLLESLSNEDWRIRGAAAWIIGNFQD--------ER 73 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCS----ST----T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HH
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhC----ch----H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------HH
Confidence 344556666777777777777777665432 11 1 3666677777788888887777776542 34
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHh
Q psy14014 285 LVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMG 353 (615)
Q Consensus 285 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~ 353 (615)
.++.+...++|+++.||..|+.+|+.+.. +..+|.|.+.++|+++.||..++.+|+.
T Consensus 74 a~~~L~~~L~d~~~~VR~~A~~aL~~~~~------------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 74 AVEPLIKLLEDDSGFVRSGAARSLEQIGG------------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHHCCTHHHHHHHHHHHHHCS------------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 56777777778888888888888776642 2355666677777777777777777654
No 99
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.84 E-value=9.8e-07 Score=76.53 Aligned_cols=225 Identities=10% Similarity=0.051 Sum_probs=168.7
Q ss_pred hhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHH
Q psy14014 366 HLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVR 445 (615)
Q Consensus 366 ~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr 445 (615)
..+..+.+++.|+++.|+..++.++..+.+..... .+... +-+.+ |.+.+++++++.++-
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~-l~~~~-~e~~L------------------d~iI~llk~~dEkva 92 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSD-LRMMV-LERHL------------------DVFINALSQENEKVT 92 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHH-HHHHH-HHHHH------------------HHHHHTCCSTTHHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-ccHHH-HHHHH------------------HHHHHHHhccchhHH
Confidence 35678889999999999999999999988765322 11111 11112 678888899999999
Q ss_pred HHHHHHhHHHHhhhCh-HhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcCCCchHHH
Q psy14014 446 LAIIEYMPLLAGQLGV-EFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRM 524 (615)
Q Consensus 446 ~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~~R~ 524 (615)
-.|++++..+...... +..+..+...+.+....++...+..++..++.+ +... ....+...+..++.++++.++.
T Consensus 93 l~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~---~~~~V~~~l~sLl~Skd~~vK~ 168 (265)
T 3b2a_A 93 IKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPLE---DSKLVRTYINELVVSPDLYTKV 168 (265)
T ss_dssp HHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSC---CCHHHHHHHHHHHTCSSHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Cccc---chHHHHHHHHHHHhCCChhHHH
Confidence 9999999999876543 223456778888899999999999999999998 2222 2345777888888999999999
Q ss_pred HHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhh---HHhhHHHHHhhhc-CCCCccH
Q psy14014 525 TCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNV---IQSQVKPALDKLN-GDTDVDV 600 (615)
Q Consensus 525 ~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~---~~~~~~~~l~~l~-~d~d~~v 600 (615)
.++.++.+++...+.......++.-+..+++.+|+.++..|..++..+.+.-=... -.-.+...+.+|. -..-+.+
T Consensus 169 agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~ 248 (265)
T 3b2a_A 169 AGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPII 248 (265)
T ss_dssp HHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHH
T ss_pred HHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhH
Confidence 99999999997766555556666667778888899999999999999986411111 1234556667776 7788899
Q ss_pred HHHHHHHHHHHhhc
Q psy14014 601 KYFAQEAISSIADS 614 (615)
Q Consensus 601 ~~~a~~a~~~~~~~ 614 (615)
|..|......+.+.
T Consensus 249 ~~ka~~v~~~le~~ 262 (265)
T 3b2a_A 249 RLKAKKVSDLIDSV 262 (265)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99998877766553
No 100
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.82 E-value=7e-10 Score=91.82 Aligned_cols=121 Identities=14% Similarity=0.125 Sum_probs=91.9
Q ss_pred HHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhH
Q psy14014 243 EQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQEN 322 (615)
Q Consensus 243 ~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 322 (615)
.+.-.+.+...++|+++.+|..++..|+.+.. .. ++.+..+++|+++.||..|+.+|+.+..
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--------~~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------- 71 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD--------EA-FEPLLESLSNEDWRIRGAAAWIIGNFQD--------- 71 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSS--------TT-HHHHHHGGGCSCHHHHHHHHHHHGGGCS---------
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc--------hH-HHHHHHHHcCCCHHHHHHHHHHHHhcCC---------
Confidence 34456778888999999999999988876532 12 4889999999999999999999987653
Q ss_pred HHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChhHHHHHHHhhhH
Q psy14014 323 IIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 392 (615)
Q Consensus 323 ~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~ 392 (615)
+..+|.+.+.++|+++.||..++++|+.+.. +..+|.+.+.++|+++.||..|+.+|+.
T Consensus 72 ---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ---ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2357778888899999999999999998752 2467889999999999999999998864
No 101
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=98.80 E-value=1.4e-07 Score=82.78 Aligned_cols=138 Identities=18% Similarity=0.165 Sum_probs=110.4
Q ss_pred hhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHHHH-HhCCCChHHHHHHHHhHHHHHHHhchhhhHhh
Q psy14014 128 AHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRN-LCQDDTPMVRRAAAGKLGELAKVVEVDYLKTD 206 (615)
Q Consensus 128 ~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~-l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ 206 (615)
+.++++...+..++...+|..|+.+++.. . ....+++.+.. +..|++|.||..++.+++.++...+++ .
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-----~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe----~ 139 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-----KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK----K 139 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-----TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT----T
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-----CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH----H
Confidence 45678888888888889999999888877 3 12567788887 888999999999999999999755443 3
Q ss_pred hHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q psy14014 207 IIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKA 275 (615)
Q Consensus 207 ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~ 275 (615)
.++.+...++|++..||+.|++.+...+...........++|.+..+..|+++.||++++..|..+++.
T Consensus 140 ~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 140 ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 778899999999999999999886543332222233445899999999999999999999999998864
No 102
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.79 E-value=4.6e-07 Score=88.65 Aligned_cols=253 Identities=12% Similarity=0.078 Sum_probs=165.6
Q ss_pred chHHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhc-cCCChhhHHHHH
Q psy14014 91 LLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCY-PRVTAGVKAELR 169 (615)
Q Consensus 91 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~-~~~~~~~~~~l~ 169 (615)
+...|..-+-++..++|+.|+-+|+.+.+..+...-.. +. ..+..++++++.++ .++
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~-----------~~--~N~DLAvRLLCVLALDRF--------- 232 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ-----------IR--VDSKLFSKIYEILVTDKF--------- 232 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC-----------CC--CCTTHHHHHHHHHHHBCC---------
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee-----------cc--ccHHHHHHHHHHHHhccc---------
Confidence 66666666678899999999999999998876411000 00 01133444443332 111
Q ss_pred HHHHHHhCC-CChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHH
Q psy14014 170 SHFRNLCQD-DTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMP 248 (615)
Q Consensus 170 ~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 248 (615)
-....| ..-.||..|+++||.+ .+.+++ ..++-.+...+..+.|+||..++-.+..+...+.. .+.++|
T Consensus 233 ---GDYVSDqVVAPVRETaAQtLGaL-~hLp~e---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~ 302 (800)
T 3oc3_A 233 ---NDFVDDRTVAPVRDAAAYLLSRI-YPLIGP---NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCR 302 (800)
T ss_dssp ---BBCSSSSCBCHHHHHHHHHHHHH-TTTSCS---CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHH
T ss_pred ---cccccCeeeeehHHHHHHHHHHH-HhCChh---HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHH
Confidence 112233 2457999999999999 777765 34444444555778899999999888877444432 577889
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCc--HHHHHHHHHHHHHHHhhccccchhHHHHH
Q psy14014 249 TLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSE--AEVRAAAANKVRDFCQNLDAYNQENIIMT 326 (615)
Q Consensus 249 ~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 326 (615)
.+...+.|++..||..++.+|..++ .. ...+.++..+...+.+.+ ..--...+..|..++..-..... .+
T Consensus 303 aVL~GL~D~DDDVRAVAAetLiPIA---~p-~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~----dp 374 (800)
T 3oc3_A 303 KLVSLLSSPDEDIKLLSAELLCHFP---IT-DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSI----PP 374 (800)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHTTSC---CS-STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCC----CS
T ss_pred HHHhhcCCcccHHHHHHHHHhhhhc---ch-hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccccc----Ch
Confidence 9999999999999999999988877 22 224566666666665432 11122334445555543211111 13
Q ss_pred hhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHH-HHHhhcCCChhHHHHHHHhhh
Q psy14014 327 YILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPL-FLSQLKDECPEVRLNIISNLD 391 (615)
Q Consensus 327 ~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~-l~~~l~d~~~~vr~~a~~~l~ 391 (615)
.++|.|...+.+.-..||.++++++..+. ...+++. +.+.+-+++++|+..+.+.+.
T Consensus 375 ~LVPRL~PFLRHtITSVR~AVL~TL~tfL--------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 375 ERLKDIFPCFTSPVPEVRTSILNMVKNLS--------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp GGGGGTGGGGTCSSHHHHHHHHHHTTTCC--------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 67788888899999999999999998776 1234444 455667889999998888774
No 103
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.43 E-value=2.3e-05 Score=86.10 Aligned_cols=388 Identities=10% Similarity=0.032 Sum_probs=202.5
Q ss_pred cCCChhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhch------hhhHhhhHHHHHHhhc-cCchhHHHHHHHHH
Q psy14014 158 PRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV------DYLKTDIIPMFVNLAQ-DEQDSVRLLAVEAC 230 (615)
Q Consensus 158 ~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~------~~~~~~ll~~l~~~~~-d~~~~vr~~a~~~l 230 (615)
...++...+.+.+.+..++.|.+..-...+++.++.+...... +..+..+.|.+...+. +-.++....=..++
T Consensus 499 rn~~~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i 578 (997)
T 1vsy_5 499 SGFCELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLA 578 (997)
T ss_dssp TTTCCCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 3445555677888888899999988999999999998764322 3467889999999888 45544333212222
Q ss_pred HHHHhhcChhhHHHhHHHHHHHh----c-C-CCCh--HHHHHHHHH-HHHHHHHhCccchhhhHHHHHHHhhcCCcHHHH
Q psy14014 231 VSIASLLSQSDVEQLVMPTLRQC----S-G-DTSW--RVRYMVADK-FTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVR 301 (615)
Q Consensus 231 ~~l~~~~~~~~~~~~l~~~l~~~----~-~-d~~~--~vR~~~~~~-l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr 301 (615)
..+....++.. ...++..+..+ . . +.++ ..|...+.. +..+...++. ...++..+. +.++...||
T Consensus 579 ~~~~~~~DprR-~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~---~~~~l~~~~--l~h~y~~VR 652 (997)
T 1vsy_5 579 WWLPAVVDLRR-SKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPD---VGKLFDELV--FDHPYDQVR 652 (997)
T ss_dssp HHHHHHSCGGG-CHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCC---CHHHHHHCC--SCCSCHHHH
T ss_pred HHHhcCCChhh-hHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhcccccc---HHHHHHHHH--hCCChHHHH
Confidence 22222222221 22344433221 0 1 1111 122222222 1222222221 234454444 778889999
Q ss_pred HHHHHHHHHHHhhccccch--hHHHH----------------------H---hhHHHHHHhhC---C--C-----CHHH-
Q psy14014 302 AAAANKVRDFCQNLDAYNQ--ENIIM----------------------T---YILPYVKDLVA---D--P-----NQHV- 343 (615)
Q Consensus 302 ~~a~~~l~~~~~~~~~~~~--~~~~~----------------------~---~l~p~l~~~~~---d--~-----~~~v- 343 (615)
+.....|..+....-.... .+.+. + .++..+...-. + + +...
T Consensus 653 e~Ig~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~ 732 (997)
T 1vsy_5 653 QAVAKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFY 732 (997)
T ss_dssp HHHHHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHH
T ss_pred HHHHHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHH
Confidence 9988888777765411100 00000 0 01111110000 0 1 1111
Q ss_pred -HHHHHHHHHhhchhhcch---hhhh-hhHHHHHHhhcCCCh-hHHHH-HHHhhhHhhhhhchhHHHHHHHHHhhhhhhh
Q psy14014 344 -KSALASVIMGLSPILGKH---NTVD-HLLPLFLSQLKDECP-EVRLN-IISNLDCVNEVIGIQQWRVRLAIIEYMPLLA 416 (615)
Q Consensus 344 -R~~~~~~l~~l~~~~g~~---~~~~-~l~p~l~~~l~d~~~-~vr~~-a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~ 416 (615)
-.+++..+.......... .+.. .++|.+.++.++++. +.... +..++..+....-
T Consensus 733 ~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~------------------ 794 (997)
T 1vsy_5 733 RTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPI------------------ 794 (997)
T ss_dssp HHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCC------------------
T ss_pred HHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCC------------------
Confidence 123333332222111100 1111 144444444443322 22222 2122221111100
Q ss_pred hccccchhhhhhhhHHHHHhhh-cCCchHHHHHHHHhHHHHhh----hChHhHHHHHHHHHHHhcCCcc-hHHHHHHHHH
Q psy14014 417 GQLGVEFFDEKLNALSIVELAE-DSKWRVRLAIIEYMPLLAGQ----LGVEFFDEKLNALCMTWLVDHV-YAIREAATLN 490 (615)
Q Consensus 417 ~~~~~~~~~~~l~~~~i~~~~~-~~~~~vr~~~~~~l~~l~~~----~~~~~~~~~l~~~l~~~l~d~~-~~vR~~a~~~ 490 (615)
..+..++.+ ..+.+... +++| .|..++..+..+.-. ++.+. ...+...+..+|.|+. .+||+.|..+
T Consensus 795 ---~~~~~~~~l--~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~-~~~i~~~v~~~L~D~q~~EVRe~Aa~t 867 (997)
T 1vsy_5 795 ---RKNHVAAIV--DYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEE-KNKILEFVVSNLYNEQFVEVRVRAASI 867 (997)
T ss_dssp ---CHHHHHHHH--HHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTH-HHHTHHHHTTTTTCSSCHHHHHHHHHH
T ss_pred ---CHHHHHHHH--HHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHH-HHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 000000001 12223333 6799 999999998777531 23332 3567888889999999 9999999999
Q ss_pred HHHHHHHhChHHhhhchhHHHHhhhcC------------CCchHHHHHHHHHHHHHhhhChh----hHHHhhHHHHHhhC
Q psy14014 491 LKKLVEQFGSEWAQSTVIPKVVAMSRD------------QNYLHRMTCLFCINVLAEACGPT----VTANFLLPTVLNMA 554 (615)
Q Consensus 491 l~~l~~~~~~~~~~~~i~~~l~~~~~d------------~~~~~R~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~~~ 554 (615)
|+.++...+.......++..+.+.+.. .+...|.+++-+|+.+....+.+ .+.+.++..|.+..
T Consensus 868 Lsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~ 947 (997)
T 1vsy_5 868 LSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWA 947 (997)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTS
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHh
Confidence 999986542422222344444443311 12257788999999999876544 35667777777788
Q ss_pred CCCCchHHHHHHHHHHHHhHhhh
Q psy14014 555 GDNVANVRFNVAKTLQKIGPILE 577 (615)
Q Consensus 555 ~D~~~~vr~~a~~~l~~l~~~~~ 577 (615)
.|+.+ |+..+-++++.+.....
T Consensus 948 ~~~~~-i~~tvk~tlseFkrTH~ 969 (997)
T 1vsy_5 948 RTSGM-TGNAAKNTISEFKKVRA 969 (997)
T ss_dssp SSCSS-HHHHTHHHHHHHHHHTS
T ss_pred CCCCc-hHHHHHHHHHHHHhccc
Confidence 88766 99999999999876543
No 104
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.33 E-value=0.00066 Score=74.74 Aligned_cols=552 Identities=12% Similarity=0.013 Sum_probs=276.2
Q ss_pred HHHHHHHhcCccHHHHHHHHhcHHHHHHHhCcchhhccchhhhhhhcC----CcH-HHHHHHHHHhc--cccCCC-CCcc
Q psy14014 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIY----DED-EVLLALAEQLG--TFTPNV-GGPE 86 (615)
Q Consensus 15 i~~ll~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~----~~~-~vr~~a~~~l~--~l~~~~-~~~~ 86 (615)
+..+++-.-|.=+++|..|-..|......+.. .+..++|.+.+.++ +.+ +..+.+...|. ++...+ .+..
T Consensus 135 l~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~g--s~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~d~~ 212 (997)
T 1vsy_5 135 LVDIIQLATSLYPDIYKPAQGTLVHCMKQLVG--SYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMTDYK 212 (997)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTT--HHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGGCHH
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhcChH
Confidence 55555666688888999999999999876643 45556666555443 222 44444444433 222211 2345
Q ss_pred hhhhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcChh-------------------H------------------Hhh-
Q psy14014 87 YVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH-------------------D------------------LEA- 128 (615)
Q Consensus 87 ~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~-------------------~------------------~~~- 128 (615)
+...+++.|......+++.|+..+-.+...+....... . ...
T Consensus 213 ~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~~~~~~ 292 (997)
T 1vsy_5 213 DIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKREYYLSL 292 (997)
T ss_dssp HHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777777776666655555432110 0 000
Q ss_pred --hHHHHHHHhh-cCCC--cchhhhHHhhhhhhccCCChhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhh-
Q psy14014 129 --HFVPLVQRLA-SGDW--FTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY- 202 (615)
Q Consensus 129 --~~l~~l~~l~-~~~~--~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~- 202 (615)
.+...+...+ .+.. +.....++.++-.+..+.......+++..+.+.+.|+.+.+|+.+..++..+........
T Consensus 293 ~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~~~~~~v~~~~~~l~~dhp~~R~~a~~~l~~il~~~k~~~~ 372 (997)
T 1vsy_5 293 LVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESKPDKRAVFSIISQISTKHPEIIHLVVKSLLSTCNKIISLSD 372 (997)
T ss_dssp HHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCCCCHHHHHHHHGGGGGCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 1222222332 2335 666666666644444444444456677788888899999999999999987776532100
Q ss_pred -----------------------hHhhhHHHHHHh---------hccCc--h-------------------hHHHHHHHH
Q psy14014 203 -----------------------LKTDIIPMFVNL---------AQDEQ--D-------------------SVRLLAVEA 229 (615)
Q Consensus 203 -----------------------~~~~ll~~l~~~---------~~d~~--~-------------------~vr~~a~~~ 229 (615)
..+.....+.+- .-|.. + +....-..+
T Consensus 373 ~~~d~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~yfid~~~~~Gwl~Wp~~~~vy~p~~~~l~~~~~e~~i 452 (997)
T 1vsy_5 373 YEYDITRAYKNEFNPSFVEILDTSTTSFPKTFTEEMNNFDNPKYFIDLRAYVGWLCWGRLMYVMSPKALKLNLRENELEV 452 (997)
T ss_dssp HTTCGGGGSSSSCCCTTEEEEESCSTTTHHHHHHHHSCCSSCCCBCCSCCCSBTTBCCSEEEEECTTCCCCCCCHHHHHH
T ss_pred CCCcHHHhhccccCCCCceecCCCCccHHHHHHHHHhcccCCccceeCCCCCeEeeeCCceeEeCCCCCCCCCCHHHHHH
Confidence 000111111111 11111 0 001111112
Q ss_pred HHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHH----HHhCccchhhhHHHHHHHhhcCCcHHHHHHHH
Q psy14014 230 CVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQ----KAVGPEITKTDLVQAFQMLLKDSEAEVRAAAA 305 (615)
Q Consensus 230 l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~----~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~ 305 (615)
+..+++.+. ..+...++.++.+- ++.+..-+..-+..+..+. ..+|. ...+.+.|.+..++.|.+..-+.+|+
T Consensus 453 ~~~f~~~~~-~~~~~~l~~~l~qe-~~~~~~F~~~~v~l~k~lf~l~~rn~~~-~~l~~l~~~~e~L~~~~dk~~qr~aa 529 (997)
T 1vsy_5 453 LKTAGHLLT-REFLRDVTMNLVQD-NETRGVFSSGNVSFFSLVILLISSGFCE-LNMSDLFELCESYYNKDDKASMIMSV 529 (997)
T ss_dssp HHHHHTTCC-HHHHHHHHHHHHHT-TTTTCCCCHHHHHHHHHHHHHHTTTTCC-CCGGGHHHHHHHTCCSSCHHHHHHHH
T ss_pred HHHHHhhcC-HHHHHHHHHHHHhh-ccccCccccchHHHHHHHHHHHhcccch-hhHHHHHHHHHHHhccccHHHHHHHH
Confidence 333443344 34455555554432 1111111222233333333 34453 44678999999999999888888999
Q ss_pred HHHHHHHhhcccc--chhHHHHHhhHHHHHHhhC-CCCHHHHHHHHHHHHhhchh---------------------hcch
Q psy14014 306 NKVRDFCQNLDAY--NQENIIMTYILPYVKDLVA-DPNQHVKSALASVIMGLSPI---------------------LGKH 361 (615)
Q Consensus 306 ~~l~~~~~~~~~~--~~~~~~~~~l~p~l~~~~~-d~~~~vR~~~~~~l~~l~~~---------------------~g~~ 361 (615)
..+++++...... ...+...+-+.|.+.+.+. +-+++....-..++..+... .+.+
T Consensus 530 Ei~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR~~~L~e~l~~~~~~l~~~~~ 609 (997)
T 1vsy_5 530 EIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRRSKTFFCHFINADGMFDRESD 609 (997)
T ss_dssp HHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGGCHHHHHHHTCCCCCCCCCSS
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhhhHHHHHHHHHhhcccCCCCC
Confidence 9999988753321 1223466778888888877 44443332221111111110 0000
Q ss_pred h---------h-----------hhhhHHHHHHh-hcCCChhHHHHHHHhhhHhhhhhc---hhHHHHHHHHHhhhhhhhh
Q psy14014 362 N---------T-----------VDHLLPLFLSQ-LKDECPEVRLNIISNLDCVNEVIG---IQQWRVRLAIIEYMPLLAG 417 (615)
Q Consensus 362 ~---------~-----------~~~l~p~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~~~i~~~l~~l~~ 417 (615)
. + .....+.+..+ +.++...||+...+.|..+....- .......+. ...+. .+
T Consensus 610 ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~l~h~y~~VRe~Ig~~L~~i~~~~~~~~~~~~~~~l~--~~~~~-~~ 686 (997)
T 1vsy_5 610 AATHQTSKIYMLRSILMSMEFRAPDVGKLFDELVFDHPYDQVRQAVAKLLTTLVQNQSNPSISDPTTLLE--AERND-PD 686 (997)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCCSCCSCHHHHHHHHHHHHHHHHTSCCCCBSCHHHHHH--HHHSC-SS
T ss_pred cHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhcccCCCCHHHHHH--hhccc-cc
Confidence 0 0 00111222222 456678899988888876654320 011110000 00000 00
Q ss_pred ccc------cchhhhhhhh--HHHHHhhh---c--CCchHHHHHH----HHhHHHHhhhChHh---HH----HHHHHHHH
Q psy14014 418 QLG------VEFFDEKLNA--LSIVELAE---D--SKWRVRLAII----EYMPLLAGQLGVEF---FD----EKLNALCM 473 (615)
Q Consensus 418 ~~~------~~~~~~~l~~--~~i~~~~~---~--~~~~vr~~~~----~~l~~l~~~~~~~~---~~----~~l~~~l~ 473 (615)
.++ ...+.+.+.. ..+..+.. . +....+.... ..+.-+...++... +. +.++|.++
T Consensus 687 ~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll 766 (997)
T 1vsy_5 687 GLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLI 766 (997)
T ss_dssp SSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTC
T ss_pred cccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHH
Confidence 001 1111111110 01111111 1 1111111121 12222223333221 11 11444444
Q ss_pred HhcCCcch-HHHHH-HHHHHHHHHHHhChHHhhhchhHHHHhhhc-CCCchHHHHHHHHHHHHHhh----hChhhHHHhh
Q psy14014 474 TWLVDHVY-AIREA-ATLNLKKLVEQFGSEWAQSTVIPKVVAMSR-DQNYLHRMTCLFCINVLAEA----CGPTVTANFL 546 (615)
Q Consensus 474 ~~l~d~~~-~vR~~-a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~-d~~~~~R~~a~~~l~~l~~~----~~~~~~~~~i 546 (615)
.+..+++. ++... |..++..++...-+....+.++..+.+..+ +++| .|..++..+..+.-. ++.+. ...+
T Consensus 767 ~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~-~~~i 844 (997)
T 1vsy_5 767 GLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEE-KNKI 844 (997)
T ss_dssp TTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTH-HHHT
T ss_pred HHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHH-HHHH
Confidence 44444443 44444 555555554322112223345566655555 6799 999998877666542 22222 2578
Q ss_pred HHHHHhhCCCCC-chHHHHHHHHHHHHhHhh
Q psy14014 547 LPTVLNMAGDNV-ANVRFNVAKTLQKIGPIL 576 (615)
Q Consensus 547 ~~~l~~~~~D~~-~~vr~~a~~~l~~l~~~~ 576 (615)
...+..++.|+. .+||..|+.+|+.++...
T Consensus 845 ~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~ 875 (997)
T 1vsy_5 845 LEFVVSNLYNEQFVEVRVRAASILSDIVHNW 875 (997)
T ss_dssp HHHHTTTTTCSSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHHHcC
Confidence 899999999999 999999999999998654
No 105
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.11 E-value=0.0027 Score=64.98 Aligned_cols=326 Identities=15% Similarity=0.200 Sum_probs=179.2
Q ss_pred HHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhc-c-CchhHHHHHHHHHHHHHhhcChhhHHHhHHHHH
Q psy14014 173 RNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQ-D-EQDSVRLLAVEACVSIASLLSQSDVEQLVMPTL 250 (615)
Q Consensus 173 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~-d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l 250 (615)
-++....-.+=|+.|+..|..+++....+. ...-+|.+...++ | ++.++-+.++++|..+...-+.+.-.. .
T Consensus 28 ~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~V-g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~-~---- 101 (651)
T 3grl_A 28 DRVASSTLLDDRRNAVRALKSLSKKYRLEV-GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEE-N---- 101 (651)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHTTTTTTTHH-HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-------------
T ss_pred HHHhhccchhHHHHHHHHHHHHHHHhHHHh-hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccc-c----
Confidence 344445566779999999999987665443 3334555555544 4 345566667777765433222111000 0
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHH-HHhhH
Q psy14014 251 RQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENII-MTYIL 329 (615)
Q Consensus 251 ~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-~~~l~ 329 (615)
.......+....++. +. ...+-++.++.+++..+..+|..+++.|..++..-+...++... .+.-+
T Consensus 102 ---~~~~~~~~~~~~~d~---f~-------~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi 168 (651)
T 3grl_A 102 ---STRQSEDLGSQFTEI---FI-------KQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGV 168 (651)
T ss_dssp ---------CHHHHHHHH---HH-------HSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHH
T ss_pred ---ccccchHHHHHHHHH---HH-------cCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccH
Confidence 000000011111111 11 12467888999999999999999999999999875543332222 23567
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhhchhhcc-hh--hhhhhHHHHHHhhcCCCh----hHHHHHHHhhhHhhhhhchh--
Q psy14014 330 PYVKDLVADPNQHVKSALASVIMGLSPILGK-HN--TVDHLLPLFLSQLKDECP----EVRLNIISNLDCVNEVIGIQ-- 400 (615)
Q Consensus 330 p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~-~~--~~~~l~p~l~~~l~d~~~----~vr~~a~~~l~~l~~~~~~~-- 400 (615)
|.|..++.|....+|..++..|..++..-.. +. ..+...+.+...++.+.. .|...++..+..+.+.....
T Consensus 169 ~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~ 248 (651)
T 3grl_A 169 SRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQN 248 (651)
T ss_dssp HHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHH
Confidence 8899999999999999999999888763211 11 123456777777765433 57777777777776543211
Q ss_pred HHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHHH-----HHHHHhHHHHhhhCh---------HhHHH
Q psy14014 401 QWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRL-----AIIEYMPLLAGQLGV---------EFFDE 466 (615)
Q Consensus 401 ~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr~-----~~~~~l~~l~~~~~~---------~~~~~ 466 (615)
-+++ ..++|.+..-+..+ -....|.-+. .++..+..+...-++ .+...
T Consensus 249 ~FrE----t~~i~~L~~LL~~~--------------~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~ 310 (651)
T 3grl_A 249 FFKE----GSYIQRMKPWFEVG--------------DENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQC 310 (651)
T ss_dssp HHHH----TTCGGGGGGGGCCC--------------SCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHT
T ss_pred HHHH----cCCHHHHHHHhCCC--------------ccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHC
Confidence 1111 11343333211100 0112454221 122233333221111 11233
Q ss_pred HHHHHHHHhcCCc--chHHHHHHHHHHHHHHHHhCh--HHhh----------hchhHHHHhhhcCC-CchHHHHHHHHHH
Q psy14014 467 KLNALCMTWLVDH--VYAIREAATLNLKKLVEQFGS--EWAQ----------STVIPKVVAMSRDQ-NYLHRMTCLFCIN 531 (615)
Q Consensus 467 ~l~~~l~~~l~d~--~~~vR~~a~~~l~~l~~~~~~--~~~~----------~~i~~~l~~~~~d~-~~~~R~~a~~~l~ 531 (615)
.+++.+.+++..+ ...+|..|+.+++.++..... +.+. ..++..+..+.++. ....|.+++.|+.
T Consensus 311 g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ 390 (651)
T 3grl_A 311 GLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQ 390 (651)
T ss_dssp THHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 4566677765443 567999999999998764321 1111 11333344555554 5678999999999
Q ss_pred HHHh
Q psy14014 532 VLAE 535 (615)
Q Consensus 532 ~l~~ 535 (615)
....
T Consensus 391 ay~~ 394 (651)
T 3grl_A 391 CFLY 394 (651)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8864
No 106
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=98.06 E-value=0.0038 Score=60.87 Aligned_cols=184 Identities=20% Similarity=0.133 Sum_probs=107.0
Q ss_pred ChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCCh
Q psy14014 180 TPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSW 259 (615)
Q Consensus 180 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~ 259 (615)
+...++.+++.+..+.+.++.- ...-+..+..++.|++..||..|+..|..+|.. ...+.+..+|.+++...+.
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP~l--~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqtdd~ 114 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFPEL--ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQTDDS 114 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCGGG--HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTCCCH
T ss_pred CHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhccch
Confidence 5777777777777777776642 345566677777788777888877777777655 3466677777777776666
Q ss_pred HHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCC
Q psy14014 260 RVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADP 339 (615)
Q Consensus 260 ~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~ 339 (615)
.-+..+-++|..+...-+ ...+-..+.+... .+..+|+.+++.|..-+..++.+.........+...+.+.++|.
T Consensus 115 ~E~~~V~~sL~sllk~Dp----k~tl~~lf~~i~~-~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DV 189 (507)
T 3u0r_A 115 AEFNLVNNALLSIFKMDA----KGTLGGLFSQILQ-GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDV 189 (507)
T ss_dssp HHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHH-SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHhcCh----HHHHHHHHHHHcc-cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccc
Confidence 655555555555554211 1233334444444 35688888888887766666554333334444555666667665
Q ss_pred CHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhh
Q psy14014 340 NQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQL 375 (615)
Q Consensus 340 ~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l 375 (615)
...-=..+...|..+ +..+...-.+.+++.+.+..
T Consensus 190 T~~EF~L~m~lL~~l-kl~~t~~g~qeLv~ii~eQa 224 (507)
T 3u0r_A 190 TGEEFVLFMKILSGL-KSLQTVSGRQQLVELVAEQA 224 (507)
T ss_dssp CHHHHHHHHHHHHTS-GGGSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhc-ccccCchHHHHHHHHHHHHH
Confidence 543323333333222 11121112345666666653
No 107
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.95 E-value=0.0043 Score=63.51 Aligned_cols=228 Identities=14% Similarity=0.120 Sum_probs=137.8
Q ss_pred hhHHHHHHhhcCCChhHHHHHHHhhhHhhhhhchhHHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhhhcCCchHH
Q psy14014 366 HLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVR 445 (615)
Q Consensus 366 ~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~~~~~vr 445 (615)
.-++.++.+++..+..+|..+++.|..+...-+...|..-+ . ...| .+.+..+++|+...+|
T Consensus 122 ~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il---~------~p~g---------i~~Lv~lL~d~rE~iR 183 (651)
T 3grl_A 122 ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIIL---V------SPMG---------VSRLMDLLADSREVIR 183 (651)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHH---H------STTH---------HHHHHGGGGCSSHHHH
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHH---h------Cccc---------HHHHHHHHhCchHHHH
Confidence 45788999999999999999999999887665443332211 0 0011 1688899999999999
Q ss_pred HHHHHHhHHHHhhhCh---HhHHHHHHHHHHHhcCCcch----HHHHHHHHHHHHHHHHh--ChHHhhh-chhHHHHhhh
Q psy14014 446 LAIIEYMPLLAGQLGV---EFFDEKLNALCMTWLVDHVY----AIREAATLNLKKLVEQF--GSEWAQS-TVIPKVVAMS 515 (615)
Q Consensus 446 ~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~----~vR~~a~~~l~~l~~~~--~~~~~~~-~i~~~l~~~~ 515 (615)
..++..+..+++.-.. -...+..++.+++.+..+.. .|-.-++.++..+++.- +...+.+ ..+|.|..++
T Consensus 184 neallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL 263 (651)
T 3grl_A 184 NDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWF 263 (651)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGG
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHh
Confidence 9999999998763211 11123456777777655433 56666777788887653 2233332 3677777766
Q ss_pred cCC----Cch--HHHH---HHHHHHHHHhhhCh---------hhHHHhhHHHHHhhCC-CC-CchHHHHHHHHHHHHhHh
Q psy14014 516 RDQ----NYL--HRMT---CLFCINVLAEACGP---------TVTANFLLPTVLNMAG-DN-VANVRFNVAKTLQKIGPI 575 (615)
Q Consensus 516 ~d~----~~~--~R~~---a~~~l~~l~~~~~~---------~~~~~~i~~~l~~~~~-D~-~~~vr~~a~~~l~~l~~~ 575 (615)
..+ .|. .-.+ ++.++.-+....++ ..+...+++.+.+++. +. ...+|..+..+++.++..
T Consensus 264 ~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irg 343 (651)
T 3grl_A 264 EVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRG 343 (651)
T ss_dssp CCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTT
T ss_pred CCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhC
Confidence 533 222 1122 33344444332221 1123456677777654 33 446889999999988754
Q ss_pred hhh--hhH----------HhhHHHHHhhhcCC-CCccHHHHHHHHHHHH
Q psy14014 576 LET--NVI----------QSQVKPALDKLNGD-TDVDVKYFAQEAISSI 611 (615)
Q Consensus 576 ~~~--~~~----------~~~~~~~l~~l~~d-~d~~v~~~a~~a~~~~ 611 (615)
.+. ..+ .+.+..++..+.++ +..++|..|..+++.+
T Consensus 344 N~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay 392 (651)
T 3grl_A 344 CQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCF 392 (651)
T ss_dssp CHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 321 111 13344444444444 4588899998888765
No 108
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.86 E-value=0.00069 Score=60.92 Aligned_cols=186 Identities=12% Similarity=0.089 Sum_probs=120.7
Q ss_pred HHHHHHhCCCCh--HHHHHHHHhHHHHHHHhch---hhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh---h
Q psy14014 170 SHFRNLCQDDTP--MVRRAAAGKLGELAKVVEV---DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS---D 241 (615)
Q Consensus 170 ~~l~~l~~d~~~--~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~ 241 (615)
|.+.++++++++ .++..++..+..++..-++ .......+|.+.++++.+++.++..|..+|..++..-+.. .
T Consensus 11 ~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I 90 (233)
T 3tt9_A 11 ERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEV 90 (233)
T ss_dssp HHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 455677777776 8888888888888754322 2334567899999999999999999999999998642221 1
Q ss_pred HHHhHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhCcc-chhhhHHHHHHHhhc-------C---------CcHHHHHH
Q psy14014 242 VEQLVMPTLRQCSG-DTSWRVRYMVADKFTDLQKAVGPE-ITKTDLVQAFQMLLK-------D---------SEAEVRAA 303 (615)
Q Consensus 242 ~~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~-------d---------~~~~vr~~ 303 (615)
.....+|.+.+++. .+++.+++.++.+|..++..-... ......+|.+.+++. + .+++|+..
T Consensus 91 ~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~n 170 (233)
T 3tt9_A 91 AELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYN 170 (233)
T ss_dssp HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHH
T ss_pred HHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHHHH
Confidence 12347888988887 578999999999998887532211 112234566655431 1 36789999
Q ss_pred HHHHHHHHHhhccccchhH-----HHHHhhHHHHHHhhC--CCCHHHHHHHHHHHHhhch
Q psy14014 304 AANKVRDFCQNLDAYNQEN-----IIMTYILPYVKDLVA--DPNQHVKSALASVIMGLSP 356 (615)
Q Consensus 304 a~~~l~~~~~~~~~~~~~~-----~~~~~l~p~l~~~~~--d~~~~vR~~~~~~l~~l~~ 356 (615)
|..+|..+... +++.+.. -..+.++.++..... +.+.+.+..++.+|.+++.
T Consensus 171 a~~~L~nLss~-~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 171 VTGCLRNMSSA-GADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHTTS-CHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhcC-CHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 99999887653 1122211 123333444443332 2355677777777777654
No 109
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.83 E-value=0.045 Score=58.46 Aligned_cols=203 Identities=10% Similarity=0.047 Sum_probs=107.9
Q ss_pred hccchhhhhhhcCCcH-HHHHHHHHHhccccCCCCCcchh------hhchHHHhhhhcCchhHHHHHHHHHHHHHHhhcC
Q psy14014 50 RGELIPFLTETIYDED-EVLLALAEQLGTFTPNVGGPEYV------HCLLPPLESLATVEETVVRDKAVESLRLISAQHS 122 (615)
Q Consensus 50 ~~~ll~~l~~~~~~~~-~vr~~a~~~l~~l~~~~~~~~~~------~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~ 122 (615)
...++|++..+ ++.+ ..|..++.+|..+++ ++... ..+.+++..++.|++..||..|+.+|++++..-+
T Consensus 33 ~~~i~Pll~~L-~S~~~~~r~~A~~al~~l~~---~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g 108 (684)
T 4gmo_A 33 EDKILPVLKDL-KSPDAKSRTTAAGAIANIVQ---DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEE 108 (684)
T ss_dssp HHTTHHHHHHH-SSSCCSHHHHHHHHHHHHTT---SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSC
T ss_pred hhhHHHHHHHc-CCCCHHHHHHHHHHHHHHHc---CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence 46789998775 5555 599999999999885 32221 1234567888999999999999999999998877
Q ss_pred hhHHhhh----HHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHh
Q psy14014 123 PHDLEAH----FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVV 198 (615)
Q Consensus 123 ~~~~~~~----~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~ 198 (615)
.+..... ++|.+..+...... ................+..+. .+-..++..+..++..-
T Consensus 109 ~d~~~~l~~~~il~~L~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~------------~~~~~~l~lL~~L~e~s 171 (684)
T 4gmo_A 109 ADFCVHLYRLDVLTAIEHAAKAVLE-----TLTTSEPPFSKLLKAQQRLVW------------DITGSLLVLIGLLALAR 171 (684)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHH-----HHHCBTTBGGGSCHHHHHHHH------------HHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHcChHHHHHHHHHhhHH-----HHhhhccccccccHHHHHHHH------------HHHHHHHHHHHHHHhCC
Confidence 6555442 55555444321100 000000001111111111111 12222334444444322
Q ss_pred ch---hhhHhhhHHHHHHhhcc---CchhHHHHHHHHHHHHHhhcChh--hH----HHhHHHHHHHhcCCCChHHHHHHH
Q psy14014 199 EV---DYLKTDIIPMFVNLAQD---EQDSVRLLAVEACVSIASLLSQS--DV----EQLVMPTLRQCSGDTSWRVRYMVA 266 (615)
Q Consensus 199 ~~---~~~~~~ll~~l~~~~~d---~~~~vr~~a~~~l~~l~~~~~~~--~~----~~~l~~~l~~~~~d~~~~vR~~~~ 266 (615)
.. .......+|.+...+.+ ....++..|.++|..+.+....- .+ ...++..+....++.+. .|..++
T Consensus 172 ~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~-~~~la~ 250 (684)
T 4gmo_A 172 DEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDP-RAVMAC 250 (684)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCT-THHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcH-HHHHHH
Confidence 21 11123455555555432 23579999999999887754321 00 11244444444444333 244555
Q ss_pred HHHHHHHH
Q psy14014 267 DKFTDLQK 274 (615)
Q Consensus 267 ~~l~~l~~ 274 (615)
..+.++..
T Consensus 251 giL~Ni~~ 258 (684)
T 4gmo_A 251 GVLHNVFT 258 (684)
T ss_dssp HHHHHHHH
T ss_pred HHHHhHhh
Confidence 55555543
No 110
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.76 E-value=0.036 Score=54.14 Aligned_cols=261 Identities=13% Similarity=0.119 Sum_probs=157.9
Q ss_pred hhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHHHHHhCCCChH
Q psy14014 103 ETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPM 182 (615)
Q Consensus 103 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~ 182 (615)
....+..|.+-+.++.+++|. +.+.-+..+..++.|++..+|..|++-++.+|.. +....+...+.++++..++.
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP~--l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~---~~i~kiaDvL~QlLqtdd~~ 115 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFPE--LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG---ENLPRVADILTQLLQTDDSA 115 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCGG--GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT---TCHHHHHHHHHHHTTCCCHH
T ss_pred CHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh---hhhhhHHHHHHHHHhccchH
Confidence 478888888888888888864 4455566777788888888999999999888876 44777888889999998988
Q ss_pred HHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh----hHHHhHHHHHHHhcCCCC
Q psy14014 183 VRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS----DVEQLVMPTLRQCSGDTS 258 (615)
Q Consensus 183 vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~~~d~~ 258 (615)
.+..+-.+|..+.+.-+. ..+-.+|.++.+ .++.+|+.++..+..-...++.+ .....+...+.+.+.|-+
T Consensus 116 E~~~V~~sL~sllk~Dpk----~tl~~lf~~i~~-~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT 190 (507)
T 3u0r_A 116 EFNLVNNALLSIFKMDAK----GTLGGLFSQILQ-GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVT 190 (507)
T ss_dssp HHHHHHHHHHHHHHHCHH----HHHHHHHHHHHH-SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHhcChH----HHHHHHHHHHcc-cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhcccc
Confidence 888888888888775432 334455555554 46789999998887655555543 344557777778887765
Q ss_pred hHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhc------CCcHHHHHHHHHHHHHHHhhc----cccchhHHHHHhh
Q psy14014 259 WRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLK------DSEAEVRAAAANKVRDFCQNL----DAYNQENIIMTYI 328 (615)
Q Consensus 259 ~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------d~~~~vr~~a~~~l~~~~~~~----~~~~~~~~~~~~l 328 (615)
..==..+...|..+ ..++.-....++++.+..... -.+++.-..-+.++..-+..+ +....-.++...+
T Consensus 191 ~~EF~L~m~lL~~l-kl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kI 269 (507)
T 3u0r_A 191 GEEFVLFMKILSGL-KSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQV 269 (507)
T ss_dssp HHHHHHHHHHHHTS-GGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc-ccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhh
Confidence 32112222222111 111111112456665554321 123333333333333333332 2222224556677
Q ss_pred HHHHHHhhCC-CCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHh
Q psy14014 329 LPYVKDLVAD-PNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQ 374 (615)
Q Consensus 329 ~p~l~~~~~d-~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~ 374 (615)
+|.+..+-.. +....|-..++.+..++...|........+|.+.+.
T Consensus 270 lP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~ 316 (507)
T 3u0r_A 270 LPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDK 316 (507)
T ss_dssp GGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHH
T ss_pred ccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHH
Confidence 7766554332 223366678888888888877433333344444433
No 111
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.74 E-value=0.00047 Score=62.04 Aligned_cols=145 Identities=12% Similarity=0.048 Sum_probs=92.9
Q ss_pred HHHHHHhcCCcch--HHHHHHHHHHHHHHHHhChH---HhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhhCh---h
Q psy14014 469 NALCMTWLVDHVY--AIREAATLNLKKLVEQFGSE---WAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGP---T 540 (615)
Q Consensus 469 ~~~l~~~l~d~~~--~vR~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~---~ 540 (615)
+|.+.++|..++. .++..|+.++..++..-.+. ......+|.|.+++.++++.+|..|+++|.+++...+. .
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 5667777776666 77777878887777542211 11223678888888888888888888888888753211 1
Q ss_pred hHHHhhHHHHHhhCC-CCCchHHHHHHHHHHHHhHhhhhh--hHHhhHHHHHhhhc------CC---------CCccHHH
Q psy14014 541 VTANFLLPTVLNMAG-DNVANVRFNVAKTLQKIGPILETN--VIQSQVKPALDKLN------GD---------TDVDVKY 602 (615)
Q Consensus 541 ~~~~~i~~~l~~~~~-D~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~l~------~d---------~d~~v~~ 602 (615)
......+|.|.+++. .++.+++..++.+|..+...-..+ .....+.+++..+. .| .|.+|++
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~ 169 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFY 169 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHH
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHHH
Confidence 123457788888876 467888888888888886433211 22222333333221 11 3668888
Q ss_pred HHHHHHHHHhh
Q psy14014 603 FAQEAISSIAD 613 (615)
Q Consensus 603 ~a~~a~~~~~~ 613 (615)
+|.-++..++.
T Consensus 170 na~~~L~nLss 180 (233)
T 3tt9_A 170 NVTGCLRNMSS 180 (233)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 88888888764
No 112
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=97.32 E-value=0.12 Score=49.70 Aligned_cols=104 Identities=14% Similarity=0.146 Sum_probs=73.3
Q ss_pred hhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchh
Q psy14014 283 TDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHN 362 (615)
Q Consensus 283 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~ 362 (615)
+.++..+...-...+ +.+...+..+.+++.+-.+ .+++.++|.+..+..|++..||+.++..|...+.. ...
T Consensus 25 ~~v~~lln~A~~~~~-~~Kl~~L~q~~EL~l~~dp-----sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~e 96 (386)
T 3o2t_A 25 ERVVDLLNQAALITN-DSKITVLKQVQELIINKDP-----TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIE 96 (386)
T ss_dssp HHHHHHHHHHHHCCS-THHHHHHHHHHHHHHTTCG-----GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGG
T ss_pred HHHHHHHHhhhccCh-HHHHHHHHHHHHHHhccCH-----HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHH
Confidence 345555544433333 3466666666665443222 25678899999999999999999999988877652 334
Q ss_pred hhhhhHHHHHHhhcCCChhHHHHHHHhhhHhh
Q psy14014 363 TVDHLLPLFLSQLKDECPEVRLNIISNLDCVN 394 (615)
Q Consensus 363 ~~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~ 394 (615)
+...+++.+..+++|+++.|...++.+.+.+.
T Consensus 97 l~~~~l~~L~~LL~d~d~~V~K~~I~~~tslY 128 (386)
T 3o2t_A 97 LLLKLIANLNMLLRDENVNVVKKAILTMTQLY 128 (386)
T ss_dssp GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 45678888999999999999999998877654
No 113
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=96.88 E-value=0.067 Score=60.01 Aligned_cols=158 Identities=14% Similarity=0.089 Sum_probs=104.7
Q ss_pred CCchHHHHHHHHhHHHHhhhCh------HhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhhhchhHHHHh
Q psy14014 440 SKWRVRLAIIEYMPLLAGQLGV------EFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVA 513 (615)
Q Consensus 440 ~~~~vr~~~~~~l~~l~~~~~~------~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~ 513 (615)
.++.+|..++-+++.++..+.. ....+.+...+.+.+...+..-+..++.+||++.. ...++.+..
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~--------p~~l~~l~~ 478 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--------PNSIKKIQR 478 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--------GGGHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--------hhHHHHHHH
Confidence 4566888888888888764421 11234455555666666667778888888888742 235666666
Q ss_pred hhcC-------CCchHHHHHHHHHHHHHhhhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHH
Q psy14014 514 MSRD-------QNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVK 586 (615)
Q Consensus 514 ~~~d-------~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 586 (615)
++.. ...++|..|+.+|..+... .+..+.+.+++.+.+ .+.+++||..|+..|-...+. ...+.
T Consensus 479 ~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~-~p~~v~~il~~i~~n--~~e~~EvRiaA~~~Lm~t~P~------~~~l~ 549 (1056)
T 1lsh_A 479 FLPGQGKSLDEYSTRVQAEAIMALRNIAKR-DPRKVQEIVLPIFLN--VAIKSELRIRSCIVFFESKPS------VALVS 549 (1056)
T ss_dssp TSTTSSSCCCCSCHHHHHHHHHTTTTGGGT-CHHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHHTCCC------HHHHH
T ss_pred hhcCccccccccchHHHHHHHHHHHHhhhh-chHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHCcC------HHHHH
Confidence 5431 2346788899999998743 233344445554443 567889999999888654321 23456
Q ss_pred HHHhhhcCCCCccHHHHHHHHHHHHhhc
Q psy14014 587 PALDKLNGDTDVDVKYFAQEAISSIADS 614 (615)
Q Consensus 587 ~~l~~l~~d~d~~v~~~a~~a~~~~~~~ 614 (615)
.+...+..|++.+|+.+....++.+++|
T Consensus 550 ~ia~~l~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 550 MVAVRLRREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence 6666677888899999988888888765
No 114
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=96.72 E-value=0.17 Score=56.70 Aligned_cols=128 Identities=9% Similarity=0.016 Sum_probs=83.8
Q ss_pred HHHHHHHhcCC----CChHHHHHHHHHHHHHHHHhCcc------chhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhc
Q psy14014 246 VMPTLRQCSGD----TSWRVRYMVADKFTDLQKAVGPE------ITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNL 315 (615)
Q Consensus 246 l~~~l~~~~~d----~~~~vR~~~~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 315 (615)
++..+..++++ .++.+|..+..+++.+...+..+ .....+...+.+.+...+.+-+..++++|+.+..
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~-- 469 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ-- 469 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--
Confidence 44455555554 46779999999999988755322 1123455556666667777778889999998765
Q ss_pred cccchhHHHHHhhHHHHHHhhC-------CCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhc--CCChhHHHHH
Q psy14014 316 DAYNQENIIMTYILPYVKDLVA-------DPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLK--DECPEVRLNI 386 (615)
Q Consensus 316 ~~~~~~~~~~~~l~p~l~~~~~-------d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~--d~~~~vr~~a 386 (615)
+..++.+.+++. +...++|.+|+.+|..++.... ..+.+.+.+.+. .++.+||..|
T Consensus 470 ----------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p-----~~v~~il~~i~~n~~e~~EvRiaA 534 (1056)
T 1lsh_A 470 ----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP-----RKVQEIVLPIFLNVAIKSELRIRS 534 (1056)
T ss_dssp ----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH-----HHHHHHHHHHHHCTTSCHHHHHHH
T ss_pred ----------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch-----HHHHHHHHHHhcCCCCChHHHHHH
Confidence 223444444442 2346899999999988874211 134556666663 4678999999
Q ss_pred HHhh
Q psy14014 387 ISNL 390 (615)
Q Consensus 387 ~~~l 390 (615)
+..|
T Consensus 535 ~~~L 538 (1056)
T 1lsh_A 535 CIVF 538 (1056)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 115
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.68 E-value=0.18 Score=45.70 Aligned_cols=129 Identities=16% Similarity=0.135 Sum_probs=86.1
Q ss_pred ChhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh
Q psy14014 161 TAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 240 (615)
Q Consensus 161 ~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~ 240 (615)
.+...+++++.+..+..|++.++|+.+++.+.+.++. +.......++.+..+++|+++.|.+.++.+...+
T Consensus 47 dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~i------- 117 (257)
T 3gs3_A 47 CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQVIKRVIQACGSI------- 117 (257)
T ss_dssp TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH-------
T ss_pred CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-------
Confidence 3455677788888888899999999999999988854 2345667888888899999999999999888764
Q ss_pred hHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhc
Q psy14014 241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNL 315 (615)
Q Consensus 241 ~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 315 (615)
++.++..+. .++... ...-++...+ ..+-..+.......+..||..+++.+..++...
T Consensus 118 --Y~~~l~~i~---~~~~~~--~~~~~~W~~m----------~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~q 175 (257)
T 3gs3_A 118 --YKNGLQYLC---SLMEPG--DSAEQAWNIL----------SLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQ 175 (257)
T ss_dssp --HHHHHHHHT---TSSSCC--HHHHHHHHHH----------HHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHh---cCCCCc--chHHHHHHHH----------HHHHHHHHHHHccCCcchHHHHHHHHHHHHHhh
Confidence 333444433 222100 0001111121 123333455567778899999999998877543
No 116
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.24 E-value=0.66 Score=42.02 Aligned_cols=143 Identities=15% Similarity=0.102 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHH
Q psy14014 222 VRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVR 301 (615)
Q Consensus 222 vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr 301 (615)
.|-..+.....++-.-.+ ...+.+++.+..+..|++..+|+.++..+...+.. +.......++.+..+++|+++.|.
T Consensus 31 ~kl~~L~qa~el~~~~dp-~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V~ 107 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSCA-ELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQVI 107 (257)
T ss_dssp HHHHHHHHHHHHHTTTTG-GGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHHHHccCH-hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHH
Confidence 454444444444433222 35667777777777888888888888888777643 222345778888888999999998
Q ss_pred HHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcchhhhhhhHHHHHHhhcCCChh
Q psy14014 302 AAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPE 381 (615)
Q Consensus 302 ~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~~~~~~l~p~l~~~l~d~~~~ 381 (615)
+.++.+...+... ++. .++++++..-. .-..+.. ...+...+.......+..
T Consensus 108 K~~I~~~~~iY~~-------------~l~---~i~~~~~~~~~--~~~~W~~----------m~~lK~~Il~~~~s~n~g 159 (257)
T 3gs3_A 108 KRVIQACGSIYKN-------------GLQ---YLCSLMEPGDS--AEQAWNI----------LSLIKAQILDMIDNENDG 159 (257)
T ss_dssp HHHHHHHHHHHHH-------------HHH---HHTTSSSCCHH--HHHHHHH----------HHHHHHHHHHGGGSSCHH
T ss_pred HHHHHHHHHHHHH-------------HHH---HHhcCCCCcch--HHHHHHH----------HHHHHHHHHHHHccCCcc
Confidence 8888887765442 111 22222221000 0001111 112334555666777889
Q ss_pred HHHHHHHhhhHhhh
Q psy14014 382 VRLNIISNLDCVNE 395 (615)
Q Consensus 382 vr~~a~~~l~~l~~ 395 (615)
||..+++.+..++.
T Consensus 160 vkl~~iKF~e~vIl 173 (257)
T 3gs3_A 160 IRTNAIKFLEGVVV 173 (257)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 99999998877654
No 117
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=96.19 E-value=0.17 Score=48.80 Aligned_cols=128 Identities=15% Similarity=0.119 Sum_probs=84.6
Q ss_pred hhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhh
Q psy14014 162 AGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD 241 (615)
Q Consensus 162 ~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~ 241 (615)
+....++++.++.+..|++.+||+.+++.+.+.++. ........++.+..+++|+++.|.+.++.+...+
T Consensus 58 psLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tsl-------- 127 (386)
T 3o2t_A 58 PTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLKLIANLNMLLRDENVNVVKKAILTMTQL-------- 127 (386)
T ss_dssp GGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH--------
Confidence 344566777788888899999999999999888864 2233567888888888999999999988888765
Q ss_pred HHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhc
Q psy14014 242 VEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNL 315 (615)
Q Consensus 242 ~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 315 (615)
++.++..+...-.+..| + . .++..+ ..+-..+...+...+..||..+++.+..++...
T Consensus 128 -Ypl~f~~i~~~~~~~~~-~-e---~~W~~m----------~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~q 185 (386)
T 3o2t_A 128 -YKVALQWMVKSRVISEL-Q-E---ACWDMV----------SAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTL 185 (386)
T ss_dssp -HHHHHHHHHHC-CCCHH-H-H---HHHHHH----------HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHhcCCCcchh-H-H---HHHHHH----------HHHHHHHHHHhccCCcchHHHHHHHHHHHHHHh
Confidence 44455554432222111 0 0 111111 122333445566778899999999999887644
No 118
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=96.13 E-value=0.0097 Score=63.60 Aligned_cols=74 Identities=15% Similarity=0.115 Sum_probs=45.9
Q ss_pred hHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhH--HHh-HHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC
Q psy14014 203 LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV--EQL-VMPTLRQCSGDTSWRVRYMVADKFTDLQKAVG 277 (615)
Q Consensus 203 ~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~-l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~ 277 (615)
....++|++.. ++++++..|..|..++..+++.-..... ... +.+.+..++.|++..||..++.+|.+++...|
T Consensus 32 ~~~~i~Pll~~-L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g 108 (684)
T 4gmo_A 32 REDKILPVLKD-LKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEE 108 (684)
T ss_dssp HHHTTHHHHHH-HSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSC
T ss_pred chhhHHHHHHH-cCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence 35667777654 5777888888888888877643221111 112 33445666777777777777777777765544
No 119
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=95.63 E-value=0.38 Score=41.27 Aligned_cols=90 Identities=10% Similarity=0.178 Sum_probs=62.8
Q ss_pred HhHHHHHHHHHHHhcCCc---chHHHHHHHHHHHHHHHHhChH--HhhhchhHHHHhhhcCC--CchHHHHHHHHHHHHH
Q psy14014 462 EFFDEKLNALCMTWLVDH---VYAIREAATLNLKKLVEQFGSE--WAQSTVIPKVVAMSRDQ--NYLHRMTCLFCINVLA 534 (615)
Q Consensus 462 ~~~~~~l~~~l~~~l~d~---~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~--~~~~R~~a~~~l~~l~ 534 (615)
+.+...++|.++..+-.+ ...+|+.|+..++.+++.+|.. .....+..++.+.+.|+ +...+..|+.++..+
T Consensus 82 epYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l- 160 (196)
T 4atg_A 82 DPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL- 160 (196)
T ss_dssp GGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh-
Confidence 445667777777764211 1279999999999999999863 34456777777777665 556788888888776
Q ss_pred hhhChhhHHHhhHHHHHhhCC
Q psy14014 535 EACGPTVTANFLLPTVLNMAG 555 (615)
Q Consensus 535 ~~~~~~~~~~~i~~~l~~~~~ 555 (615)
|++.+...++|.+....+
T Consensus 161 ---G~~~vr~~llP~l~~~~~ 178 (196)
T 4atg_A 161 ---SKNVVNTVIREHAEEYKR 178 (196)
T ss_dssp ---CHHHHHTHHHHHHHHHHH
T ss_pred ---HHHHHHHhhhcCHHHHHH
Confidence 445555667787776554
No 120
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=93.41 E-value=0.65 Score=37.67 Aligned_cols=80 Identities=9% Similarity=0.098 Sum_probs=58.2
Q ss_pred hhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchhhcch
Q psy14014 282 KTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKH 361 (615)
Q Consensus 282 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~~g~~ 361 (615)
..+.+..+.+.+++.++.+...|+..|..+.++++.....+.....++..+.+++...++.||.-+...+..-+..++.+
T Consensus 40 ~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (140)
T 3ldz_A 40 PKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKND 119 (140)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 45677888888999999999999999999999988765432222334444555555577889888888877776665543
No 121
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=92.78 E-value=2.9 Score=37.00 Aligned_cols=131 Identities=10% Similarity=0.008 Sum_probs=91.2
Q ss_pred HHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhCccchhhhHHH
Q psy14014 209 PMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSG-DTSWRVRYMVADKFTDLQKAVGPEITKTDLVQ 287 (615)
Q Consensus 209 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~ 287 (615)
..+.++...+..+.|..|...+......+.+ .-++.+..++. -.+|.+-...+.+++.+.... ...+.+
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~-----~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~-----~~~~~~ 127 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSL-----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALH-----LTELPT 127 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH-----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS-----GGGHHH
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCH-----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHC-----hHHHHH
Confidence 5556667777888898888888765433332 24455555554 467888777776666665431 245778
Q ss_pred HHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchh
Q psy14014 288 AFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPI 357 (615)
Q Consensus 288 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~ 357 (615)
.+.....+++..+|..|+.++- ...... ..+.+++.+..++.|++..||.+++++|..++..
T Consensus 128 ~i~~W~~s~~~w~rR~ai~~~l---~~~~~~-----~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~ 189 (220)
T 2b6c_A 128 IFALFYGAENFWNRRVALNLQL---MLKEKT-----NQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT 189 (220)
T ss_dssp HHHHHTTCSSHHHHHHHHHTTT---TCGGGC-----CHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHH---HHHHCC-----CHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Confidence 8889999999999988877552 221111 1355678888899999999999999999988654
No 122
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=92.11 E-value=2.1 Score=35.65 Aligned_cols=101 Identities=14% Similarity=0.151 Sum_probs=66.0
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHH
Q psy14014 254 SGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVK 333 (615)
Q Consensus 254 ~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~ 333 (615)
..+++|..=..++..+.. ......+.+-.+.+.+++.++.++..|+..|..+.++++.....+.....++..+.
T Consensus 28 ~~~~Dw~~~leicD~I~~------~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~ 101 (163)
T 1x5b_A 28 NTTEDWSLIMDICDKVGS------TPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVR 101 (163)
T ss_dssp CSSCCHHHHHHHHHHHHH------SSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhC------CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 345778654444433322 11234567778888899999999999999999999998876543222233444444
Q ss_pred HhhCC-CCHHHHHHHHHHHHhhchhhcc
Q psy14014 334 DLVAD-PNQHVKSALASVIMGLSPILGK 360 (615)
Q Consensus 334 ~~~~d-~~~~vR~~~~~~l~~l~~~~g~ 360 (615)
+++.. .++.||.-++..+..-...++.
T Consensus 102 ~l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 102 AVIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 54443 5678888887777666655554
No 123
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=92.02 E-value=2 Score=38.41 Aligned_cols=156 Identities=9% Similarity=-0.030 Sum_probs=89.5
Q ss_pred HHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHHHHHhCCCChHHHHHHH-HhHHHHHHHhchhhhHhhhHHHHHH
Q psy14014 135 QRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAA-GKLGELAKVVEVDYLKTDIIPMFVN 213 (615)
Q Consensus 135 ~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~-~~l~~l~~~~~~~~~~~~ll~~l~~ 213 (615)
..+-+++..+.|..|+.++........+.....+-. +.. ...+|.+=...+ ..++.+.+..+ ....+.+..
T Consensus 67 ~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~l~~~~~-~l~--~~~nWd~~D~~a~~~~g~~~~~~p-----~~~~~~l~~ 138 (232)
T 3jxy_A 67 RELWDLPEREFQAAALDIMQKYKKHINETHIPFLEE-LIV--TKSWWDSVDSIVPTFLGDIFLKHP-----ELISAYIPK 138 (232)
T ss_dssp HHHHTSSBHHHHHHHHHHHHHTGGGCCGGGHHHHHH-HHT--SSCCHHHHHHHTTTHHHHHHHHCG-----GGGGGTHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHc--cCCChHHHHHhhHHHHHHHHHHCH-----HHHHHHHHH
Confidence 334444444455555555543333333333222221 211 356787755543 45566554321 235567788
Q ss_pred hhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhh
Q psy14014 214 LAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLL 293 (615)
Q Consensus 214 ~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l 293 (615)
...|++..+|+.|+..+-.. . .+.....+++.+...+.|++..|+.+++..|..++.. ..+.+.+.+.+-
T Consensus 139 W~~s~~~w~rR~ai~~~l~~---~-~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~-----~p~~v~~fl~~~- 208 (232)
T 3jxy_A 139 WIASDNIWLQRAAILFQLKY---K-QKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT-----NPDVVWEYVQNN- 208 (232)
T ss_dssp HHHSSCHHHHHHHHHTTTTC---G-GGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT-----CHHHHHHHHHHS-
T ss_pred HhcCCchHHHHHHHHHHHHH---H-hCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh-----CHHHHHHHHHHC-
Confidence 88999999999987764221 1 1112335677788889999999999999998887753 234555555543
Q ss_pred cCCcHHHHHHHHHHHH
Q psy14014 294 KDSEAEVRAAAANKVR 309 (615)
Q Consensus 294 ~d~~~~vr~~a~~~l~ 309 (615)
.-.+..+..|++.|+
T Consensus 209 -~l~~~~~r~A~k~l~ 223 (232)
T 3jxy_A 209 -ELAPLSKREAIKHIK 223 (232)
T ss_dssp -CCCHHHHHHHTTTTH
T ss_pred -CCCHHHHHHHHHhcc
Confidence 333455555665554
No 124
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=91.35 E-value=1.8 Score=35.37 Aligned_cols=79 Identities=8% Similarity=0.039 Sum_probs=61.1
Q ss_pred hhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCC------CCHHHHHHHHHHHHhhc
Q psy14014 282 KTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVAD------PNQHVKSALASVIMGLS 355 (615)
Q Consensus 282 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d------~~~~vR~~~~~~l~~l~ 355 (615)
..+.+..+.+.+++.++.+...|+..|..+.++++.....+.....++..|.+++.+ .+..||.-++..+..-+
T Consensus 46 pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 46 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 456778888899999999999999999999999987765444445566667777754 46789988888887776
Q ss_pred hhhcc
Q psy14014 356 PILGK 360 (615)
Q Consensus 356 ~~~g~ 360 (615)
..++.
T Consensus 126 ~~f~~ 130 (149)
T 3g2s_A 126 VGLPE 130 (149)
T ss_dssp HHCTT
T ss_pred HHhCC
Confidence 66544
No 125
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=90.90 E-value=2.1 Score=37.90 Aligned_cols=130 Identities=12% Similarity=0.009 Sum_probs=77.5
Q ss_pred HHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHHHHHhC-CCChHHHHHHHHhHHHHHHHhchhhhHhhhHHH
Q psy14014 132 PLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQ-DDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPM 210 (615)
Q Consensus 132 ~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~ 210 (615)
.++..+-+++..+.|..|..++......+.+ +-++.+...+. ..+|.+=-..+.+++.+.... ...+.+.
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~----~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~-----~~~~~~~ 128 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSL----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALH-----LTELPTI 128 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS-----GGGHHHH
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCH----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHC-----hHHHHHH
Confidence 3444445555566666666666554333332 22333344443 457776666555555554432 2335677
Q ss_pred HHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q psy14014 211 FVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQK 274 (615)
Q Consensus 211 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~ 274 (615)
+.+..+|++..+|+.|+..+- .. ..+.....+++.+...+.|++..||++++..|..++.
T Consensus 129 i~~W~~s~~~w~rR~ai~~~l---~~-~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k 188 (220)
T 2b6c_A 129 FALFYGAENFWNRRVALNLQL---ML-KEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSK 188 (220)
T ss_dssp HHHHTTCSSHHHHHHHHHTTT---TC-GGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHHHHHH---HH-HHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence 788888888888888877542 12 1222234567777778888888888888888777664
No 126
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=90.75 E-value=7.3 Score=33.35 Aligned_cols=125 Identities=13% Similarity=0.143 Sum_probs=78.6
Q ss_pred HHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccC------chhHHHHHHHHHHHHHhh--cChhhHHHhHHHHHHHh
Q psy14014 182 MVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDE------QDSVRLLAVEACVSIASL--LSQSDVEQLVMPTLRQC 253 (615)
Q Consensus 182 ~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~------~~~vr~~a~~~l~~l~~~--~~~~~~~~~l~~~l~~~ 253 (615)
..|+.|.+.+.. +...+.++|.|.+++.++ +...-...+.....+..+ +.-+.+...++|.+..+
T Consensus 23 ~~r~~aL~sL~~-------D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtC 95 (196)
T 4atg_A 23 DMKDIAIECLEK-------ESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTC 95 (196)
T ss_dssp TTHHHHHHHHHH-------CSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-------CCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH
Confidence 346665555443 344677899988877653 222222333334444332 22345566678887766
Q ss_pred cCC---CChHHHHHHHHHHHHHHHHhCccc--hhhhHHHHHHHhhcCC--cHHHHHHHHHHHHHHHh
Q psy14014 254 SGD---TSWRVRYMVADKFTDLQKAVGPEI--TKTDLVQAFQMLLKDS--EAEVRAAAANKVRDFCQ 313 (615)
Q Consensus 254 ~~d---~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~ 313 (615)
+-. ....+|..+++.++.++..++... ....+...+.+.+.|+ ....+-.|+..|..+..
T Consensus 96 ll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~ 162 (196)
T 4atg_A 96 VIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK 162 (196)
T ss_dssp HHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH
T ss_pred HHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH
Confidence 411 112799999999999999988642 3456777777777775 46677788888887665
No 127
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=89.82 E-value=13 Score=34.76 Aligned_cols=126 Identities=17% Similarity=0.219 Sum_probs=88.3
Q ss_pred HHHHhcCCcchHHHHHHHHHHHHHHHHhC---hHHhh---hchhHHHHhhhcCCCchHHHHHHHHHHHHHhhh-ChhhH-
Q psy14014 471 LCMTWLVDHVYAIREAATLNLKKLVEQFG---SEWAQ---STVIPKVVAMSRDQNYLHRMTCLFCINVLAEAC-GPTVT- 542 (615)
Q Consensus 471 ~l~~~l~d~~~~vR~~a~~~l~~l~~~~~---~~~~~---~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~-~~~~~- 542 (615)
.+++....++.++-.-|..++..+..... .++.. +.+.....+++.++|+.+|.-+++.||.+.-.- .....
T Consensus 168 ~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~ 247 (341)
T 1upk_A 168 DFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMT 247 (341)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHH
Confidence 46678888999999999999988876422 12221 346667778899999999999999999987431 11111
Q ss_pred ----HHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhh-hhhH-------HhhHHHHHhhhcCCC
Q psy14014 543 ----ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE-TNVI-------QSQVKPALDKLNGDT 596 (615)
Q Consensus 543 ----~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~-~~~~-------~~~~~~~l~~l~~d~ 596 (615)
...-+..+..++.|+..+++..|...+..++..=. ++.. .+.+...+..+..|+
T Consensus 248 ~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~ 313 (341)
T 1upk_A 248 KYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDR 313 (341)
T ss_dssp HHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTTC
T ss_pred HHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 13467788889999999999999999988774311 1111 234555666666666
No 128
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=89.68 E-value=5.5 Score=33.40 Aligned_cols=101 Identities=10% Similarity=0.072 Sum_probs=69.4
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHH
Q psy14014 254 SGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVK 333 (615)
Q Consensus 254 ~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~ 333 (615)
+..++|..=..++..+..- .....+.+-.+.+.+++.++.|+..|+..|..+.++++.....+.....++..|.
T Consensus 26 l~~~Dw~~ileicD~I~~~------~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~ 99 (171)
T 1juq_A 26 NRQEDWEYIIGFCDQINKE------LEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELI 99 (171)
T ss_dssp CSSCCHHHHHHHHHHHHHS------TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHcC------CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHH
Confidence 3457786544444333221 1123467778888899999999999999999999998876654443445666666
Q ss_pred HhhCC------CCHHHHHHHHHHHHhhchhhcc
Q psy14014 334 DLVAD------PNQHVKSALASVIMGLSPILGK 360 (615)
Q Consensus 334 ~~~~d------~~~~vR~~~~~~l~~l~~~~g~ 360 (615)
+++.. .+..||.-+++.+..-+..++.
T Consensus 100 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 132 (171)
T 1juq_A 100 KVVSPKYLGDRVSEKVKTKVIELLYSWTMALPE 132 (171)
T ss_dssp HHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHhccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 66652 4679999888888777666654
No 129
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=89.57 E-value=7.4 Score=31.67 Aligned_cols=101 Identities=6% Similarity=0.053 Sum_probs=70.6
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHH
Q psy14014 254 SGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVK 333 (615)
Q Consensus 254 ~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~ 333 (615)
+..++|..=..++..+..- .......+-.+.+.+++.++.+...|+..|..+.++++.....+.....++..|.
T Consensus 14 l~~~dw~~~leicD~I~~~------~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~ 87 (148)
T 1mhq_A 14 MSEQDWSAIQNFCEQVNTD------PNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELI 87 (148)
T ss_dssp CSSCCHHHHHHHHHHHHHS------SHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHcC------CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHH
Confidence 4467786544444433321 1124567778888899999999999999999999999877654444456677777
Q ss_pred HhhCC------CCHHHHHHHHHHHHhhchhhcc
Q psy14014 334 DLVAD------PNQHVKSALASVIMGLSPILGK 360 (615)
Q Consensus 334 ~~~~d------~~~~vR~~~~~~l~~l~~~~g~ 360 (615)
+++.+ .+..||.-++..+..-+..++.
T Consensus 88 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 120 (148)
T 1mhq_A 88 KVLSPKYLGSWATGKVKGRVIEILFSWTVWFPE 120 (148)
T ss_dssp HTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 77764 4789998888877776665543
No 130
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=88.45 E-value=4.5 Score=35.85 Aligned_cols=102 Identities=13% Similarity=0.192 Sum_probs=67.2
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHH
Q psy14014 254 SGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVK 333 (615)
Q Consensus 254 ~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~ 333 (615)
+.+++|..=..+++.+.. ......+.+..+.+.+++.++.+...|+..|..+.++.+.....+.....++..|.
T Consensus 21 ~~~~dw~~ileicD~I~~------~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~ 94 (226)
T 3zyq_A 21 LLETDWESILQICDLIRQ------GDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELK 94 (226)
T ss_dssp CSSCCHHHHHHHHHHHHT------TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhC------CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHH
Confidence 445778654444443321 12234578888999999999999999999999999998876443222233444444
Q ss_pred HhhC-CCCHHHHHHHHHHHHhhchhhcch
Q psy14014 334 DLVA-DPNQHVKSALASVIMGLSPILGKH 361 (615)
Q Consensus 334 ~~~~-d~~~~vR~~~~~~l~~l~~~~g~~ 361 (615)
++++ ..+..||.-+++.+..-+..+..+
T Consensus 95 ~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 123 (226)
T 3zyq_A 95 DLLKRQVEVNVRNKILYLIQAWAHAFRNE 123 (226)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 4433 356788888888887777666543
No 131
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=88.27 E-value=17 Score=34.02 Aligned_cols=190 Identities=9% Similarity=0.033 Sum_probs=111.1
Q ss_pred HhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhh-----H---HHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q psy14014 204 KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD-----V---EQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKA 275 (615)
Q Consensus 204 ~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~-----~---~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~ 275 (615)
..+++..+...+..=+.+.|+.+...+..+.+.-.+.. + .+.++..+..+-++++--.-. ...|-..+.+
T Consensus 76 ~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~--G~mLRecir~ 153 (341)
T 1upk_A 76 NSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNC--GIMLRECIRH 153 (341)
T ss_dssp HHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHH--HHHHHHHHTS
T ss_pred HhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHH--HHHHHHHHHh
Confidence 45666666666666677777777777766655432210 0 234555666665555431111 1111111100
Q ss_pred --hCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhH---HHHHhhHHHHHHhhCCCCHHHHHHHHHH
Q psy14014 276 --VGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQEN---IIMTYILPYVKDLVADPNQHVKSALASV 350 (615)
Q Consensus 276 --~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~---~~~~~l~p~l~~~~~d~~~~vR~~~~~~ 350 (615)
+...+..+..+-.+.+..+.++-+|-..|...+..+... ++....+ .-.+.++....+++.++++-+|+..++.
T Consensus 154 e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~-Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKL 232 (341)
T 1upk_A 154 EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTR-HKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL 232 (341)
T ss_dssp HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhc-cHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 000000111222345677788888988888888877653 2211111 1134566777789999999999999999
Q ss_pred HHhhchhhcchhh------hhhhHHHHHHhhcCCChhHHHHHHHhhhHhhhh
Q psy14014 351 IMGLSPILGKHNT------VDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV 396 (615)
Q Consensus 351 l~~l~~~~g~~~~------~~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~ 396 (615)
|+.+.-.-....+ .+.-+..+..+|+|.+..++..|+..+..++..
T Consensus 233 LgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 233 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 9988643221111 223467788899999999999999988877643
No 132
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=88.01 E-value=7 Score=34.78 Aligned_cols=133 Identities=8% Similarity=0.066 Sum_probs=86.0
Q ss_pred hHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHhc-CCCChHHHHHHH-HHHHHHHHHhCccchhhh
Q psy14014 207 IIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS-GDTSWRVRYMVA-DKFTDLQKAVGPEITKTD 284 (615)
Q Consensus 207 ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~-~d~~~~vR~~~~-~~l~~l~~~~~~~~~~~~ 284 (615)
....+.++..++..+.|..|+..+......+.++ .++.+..++ ...+|.+-...+ ..+|.+.... ...
T Consensus 62 ~~~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~-----~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~-----p~~ 131 (232)
T 3jxy_A 62 FQIIIRELWDLPEREFQAAALDIMQKYKKHINET-----HIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKH-----PEL 131 (232)
T ss_dssp HHHHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGG-----GHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHC-----GGG
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHccCCChHHHHHhhHHHHHHHHHHC-----HHH
Confidence 3356666777778888988888876544333333 223333333 356788766553 4556655431 223
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHhhchh
Q psy14014 285 LVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPI 357 (615)
Q Consensus 285 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~l~~~ 357 (615)
..+.+.....|++..+|..|+..+-.. ..... ...+++.+...+.|++..||.++.++|..++..
T Consensus 132 ~~~~l~~W~~s~~~w~rR~ai~~~l~~---~~~~d-----~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~ 196 (232)
T 3jxy_A 132 ISAYIPKWIASDNIWLQRAAILFQLKY---KQKMD-----EELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT 196 (232)
T ss_dssp GGGTHHHHHHSSCHHHHHHHHHTTTTC---GGGCC-----HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHH---HhCCC-----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence 566778888899988888887665221 11111 234667777889999999999999999887654
No 133
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=84.31 E-value=15 Score=29.58 Aligned_cols=84 Identities=6% Similarity=-0.035 Sum_probs=57.0
Q ss_pred hhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhH----HHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCccc
Q psy14014 205 TDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV----EQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEI 280 (615)
Q Consensus 205 ~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~ 280 (615)
.+.+..+.+.+++.++.+...|+..+..+.++.|..-. ...++.-+..+++..+..||..+...+...+..++.+.
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~~ 120 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKNDP 120 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 35566777778888999999999999999998886422 12233444444445677888888888888887777654
Q ss_pred hhhhHHHH
Q psy14014 281 TKTDLVQA 288 (615)
Q Consensus 281 ~~~~l~~~ 288 (615)
....+...
T Consensus 121 ~l~~i~~~ 128 (140)
T 3ldz_A 121 QLSLISAM 128 (140)
T ss_dssp GGTHHHHH
T ss_pred CchHHHHH
Confidence 33333333
No 134
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=83.95 E-value=28 Score=32.55 Aligned_cols=145 Identities=12% Similarity=-0.034 Sum_probs=96.2
Q ss_pred HHHhhhcCCchHHHHHHHHhHHHHh---hhChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH-hChHHh--hhc
Q psy14014 433 IVELAEDSKWRVRLAIIEYMPLLAG---QLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQ-FGSEWA--QST 506 (615)
Q Consensus 433 i~~~~~~~~~~vr~~~~~~l~~l~~---~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~-~~~~~~--~~~ 506 (615)
+.+.+.+.+.+.+..++..|..+.. .+-.+|....-+..+++...+...+....++.+++++-.. .|.+-. ...
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~ 202 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSD 202 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHH
Confidence 4444556666777777777777432 3445555555566777777777888899999999988653 233211 244
Q ss_pred hhHHHHhhhcCCCchHHHHHHHHHHHHHhhhChhh--HHHh-----------hHHHHHhhCC---CCCchHHHHHHHHHH
Q psy14014 507 VIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTV--TANF-----------LLPTVLNMAG---DNVANVRFNVAKTLQ 570 (615)
Q Consensus 507 i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~~~~~--~~~~-----------i~~~l~~~~~---D~~~~vr~~a~~~l~ 570 (615)
++..+..+.......+-..|+..|..+........ +... .+..+...+. ..+.++..+++..+.
T Consensus 203 fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN 282 (339)
T 3dad_A 203 TIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLIN 282 (339)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 77777787777777777788888888876643221 1111 1345555554 678899999999988
Q ss_pred HHhHhhh
Q psy14014 571 KIGPILE 577 (615)
Q Consensus 571 ~l~~~~~ 577 (615)
.+....+
T Consensus 283 ~lL~~ap 289 (339)
T 3dad_A 283 KTLAALP 289 (339)
T ss_dssp HHHHHCS
T ss_pred HHHhcCC
Confidence 8887665
No 135
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=83.41 E-value=4.2 Score=32.12 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=11.7
Q ss_pred hhHHHHhhhcCCCchHHHHHHHHHH
Q psy14014 507 VIPKVVAMSRDQNYLHRMTCLFCIN 531 (615)
Q Consensus 507 i~~~l~~~~~d~~~~~R~~a~~~l~ 531 (615)
++|.|+.-++|.||.+...++..|.
T Consensus 32 ~lp~LL~WLQD~NWPvA~~i~~~L~ 56 (134)
T 3ut4_A 32 IIFDLLKWLQDYNWPIAKDILPVVV 56 (134)
T ss_dssp HHHHHHGGGSCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHH
Confidence 4444455555555554444444333
No 136
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=83.13 E-value=18 Score=29.73 Aligned_cols=100 Identities=10% Similarity=0.122 Sum_probs=64.9
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhc-CCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHH-
Q psy14014 254 SGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLK-DSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPY- 331 (615)
Q Consensus 254 ~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~- 331 (615)
+.+++|..=..++..+.. + .....+.+-.+.+.++ ..++.++..|+..|..+.++++.....+.....++..
T Consensus 29 l~~~Dw~~~leicD~I~~-----~-~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~ 102 (157)
T 1elk_A 29 LQSEDWALNMEICDIINE-----T-EEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESV 102 (157)
T ss_dssp CSSCCHHHHHHHHHHHHH-----S-SSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhC-----C-CccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHH
Confidence 345778664444443322 1 1234567778888887 5889999999999999999998765543333344554
Q ss_pred HHHhhC---CCCHHHHHHHHHHHHhhchhhc
Q psy14014 332 VKDLVA---DPNQHVKSALASVIMGLSPILG 359 (615)
Q Consensus 332 l~~~~~---d~~~~vR~~~~~~l~~l~~~~g 359 (615)
+.+++. ++...||.-++..+..-+..++
T Consensus 103 Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~ 133 (157)
T 1elk_A 103 LVRTILPKNNPPTIVHDKVLNLIQSWADAFR 133 (157)
T ss_dssp THHHHSTTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccCCCCcHHHHHHHHHHHHHHHHHcC
Confidence 445553 3456888888777766665554
No 137
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=82.07 E-value=19 Score=29.23 Aligned_cols=96 Identities=7% Similarity=-0.036 Sum_probs=64.7
Q ss_pred hhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhh----hchhHHHH
Q psy14014 437 AEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQ----STVIPKVV 512 (615)
Q Consensus 437 ~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~----~~i~~~l~ 512 (615)
+..++|..-..+++.+..- .-|+ ...+..+.+.+++++..+...|+..+..+++++|..+.. ..++..|.
T Consensus 14 l~~~dw~~~leicD~I~~~--~~~~----k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~ 87 (148)
T 1mhq_A 14 MSEQDWSAIQNFCEQVNTD--PNGP----THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELI 87 (148)
T ss_dssp CSSCCHHHHHHHHHHHHHS--SHHH----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHcC--CccH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHH
Confidence 3457776544444433221 1112 234556677788999999999999999999999986532 45777787
Q ss_pred hhhcC------CCchHHHHHHHHHHHHHhhhC
Q psy14014 513 AMSRD------QNYLHRMTCLFCINVLAEACG 538 (615)
Q Consensus 513 ~~~~d------~~~~~R~~a~~~l~~l~~~~~ 538 (615)
.++.+ .+..||..++..+...+..+.
T Consensus 88 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (148)
T 1mhq_A 88 KVLSPKYLGSWATGKVKGRVIEILFSWTVWFP 119 (148)
T ss_dssp HTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHccccCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 77654 366788888888887776553
No 138
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=80.34 E-value=24 Score=29.23 Aligned_cols=98 Identities=8% Similarity=-0.003 Sum_probs=63.0
Q ss_pred CCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhH----HHhHHHHHHH
Q psy14014 177 QDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV----EQLVMPTLRQ 252 (615)
Q Consensus 177 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~ 252 (615)
.+++|..-..+|+.+..- .....+.+-.+.+.++..++.+...|+..+..+..+.|..-. ...++.-+..
T Consensus 29 ~~~Dw~~~leicD~I~~~------~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~ 102 (163)
T 1x5b_A 29 TTEDWSLIMDICDKVGST------PNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRA 102 (163)
T ss_dssp SSCCHHHHHHHHHHHHHS------SSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhCC------CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 456776655444443321 112335566677778888999999999999999999886321 1223333334
Q ss_pred hcCC-CChHHHHHHHHHHHHHHHHhCccc
Q psy14014 253 CSGD-TSWRVRYMVADKFTDLQKAVGPEI 280 (615)
Q Consensus 253 ~~~d-~~~~vR~~~~~~l~~l~~~~~~~~ 280 (615)
++.. .+..||..+...+...+..++.+.
T Consensus 103 l~~~~~~~~Vk~kil~li~~W~~~f~~~~ 131 (163)
T 1x5b_A 103 VIKNKAHPKVCEKLKSLMVEWSEEFQKDP 131 (163)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTTCS
T ss_pred HHccCCCHHHHHHHHHHHHHHHHHhcCCc
Confidence 3333 567888888888888887777653
No 139
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=78.74 E-value=17 Score=31.91 Aligned_cols=101 Identities=9% Similarity=0.206 Sum_probs=63.6
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHHHH
Q psy14014 254 SGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVK 333 (615)
Q Consensus 254 ~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~ 333 (615)
+..++|..-..+++.+.. ......+.+-.+.+.+++.++.+...|+..|..+.++.+.....+.-...++..+.
T Consensus 18 ~~~~dw~~~leicd~i~~------~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~ 91 (220)
T 1dvp_A 18 RLEPDWPSILLICDEINQ------KDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFS 91 (220)
T ss_dssp CSSCCHHHHHHHHHHHHT------TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHH
T ss_pred CCCcCHHHHHHHHHhhcC------CCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHH
Confidence 345778654443333321 11234577778888999999999999999999999988765433222222333333
Q ss_pred HhhC-CCCHHHHHHHHHHHHhhchhhcc
Q psy14014 334 DLVA-DPNQHVKSALASVIMGLSPILGK 360 (615)
Q Consensus 334 ~~~~-d~~~~vR~~~~~~l~~l~~~~g~ 360 (615)
+++. ..+..||..+++.+..-+..++.
T Consensus 92 ~l~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (220)
T 1dvp_A 92 SFLESTPHENVRQKMLELVQTWAYAFRS 119 (220)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 3333 45678888877777666655543
No 140
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=77.50 E-value=39 Score=31.60 Aligned_cols=134 Identities=11% Similarity=0.054 Sum_probs=83.9
Q ss_pred CcchHHHHHHHHHHHHHHHH---hChHHhhhchhHHHHhhhcCCCchHHHHHHHHHHHHHhhh-ChhhH--HHhhHHHHH
Q psy14014 478 DHVYAIREAATLNLKKLVEQ---FGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEAC-GPTVT--ANFLLPTVL 551 (615)
Q Consensus 478 d~~~~vR~~a~~~l~~l~~~---~~~~~~~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~~-~~~~~--~~~i~~~l~ 551 (615)
..+...+..++..|..+... |-.+|....=+..|++...+...+....++.|++.+..+. |-.-+ .+..+..+.
T Consensus 129 ~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~ly 208 (339)
T 3dad_A 129 SSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLY 208 (339)
T ss_dssp HCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHH
Confidence 34555666777777764431 2233444444667777777778888888999999998652 21111 234566667
Q ss_pred hhCCCCCchHHHHHHHHHHHHhHhhhhh--hHHhh------------HHHHHhhhc--CCCCccHHHHHHHHHHHH
Q psy14014 552 NMAGDNVANVRFNVAKTLQKIGPILETN--VIQSQ------------VKPALDKLN--GDTDVDVKYFAQEAISSI 611 (615)
Q Consensus 552 ~~~~D~~~~vr~~a~~~l~~l~~~~~~~--~~~~~------------~~~~l~~l~--~d~d~~v~~~a~~a~~~~ 611 (615)
.+++..+..|-..+...|..++...+.. ..... +..++..|. ...|.++..+|..-+..+
T Consensus 209 slv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~l 284 (339)
T 3dad_A 209 TLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKT 284 (339)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHH
T ss_pred HHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 7777788899999999999988765321 11121 223444442 357888888877655543
No 141
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=73.90 E-value=9.5 Score=30.55 Aligned_cols=70 Identities=14% Similarity=0.120 Sum_probs=47.4
Q ss_pred HHHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHH---HHHhhh---c--------CCCCccHHHHHHHH
Q psy14014 542 TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVK---PALDKL---N--------GDTDVDVKYFAQEA 607 (615)
Q Consensus 542 ~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~---~~l~~l---~--------~d~d~~v~~~a~~a 607 (615)
+...+++.|.+-++++.++|+..+.+.|..++..-+ +.+...+. ..++.+ . .|....||..|.++
T Consensus 46 ~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs-~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl 124 (140)
T 1vdy_A 46 IVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSG-SEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHET 124 (140)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSC-HHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCC-HHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHH
Confidence 346788889998999999999999999999886533 22222211 223444 1 12237899999999
Q ss_pred HHHHh
Q psy14014 608 ISSIA 612 (615)
Q Consensus 608 ~~~~~ 612 (615)
++.+-
T Consensus 125 ~~ll~ 129 (140)
T 1vdy_A 125 ISAIF 129 (140)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 88764
No 142
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=73.54 E-value=36 Score=31.54 Aligned_cols=106 Identities=7% Similarity=0.075 Sum_probs=69.0
Q ss_pred hhHHHHhhhc-CCCchHHHHHHHHHHHHHhhhCh-hhH---HHhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhh---
Q psy14014 507 VIPKVVAMSR-DQNYLHRMTCLFCINVLAEACGP-TVT---ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET--- 578 (615)
Q Consensus 507 i~~~l~~~~~-d~~~~~R~~a~~~l~~l~~~~~~-~~~---~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~--- 578 (615)
++..+..... +.++..++.+++++.++...-.. ..+ .+.+++.+.....+++.++|..++..+-++.-....
T Consensus 148 l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~ 227 (304)
T 3ebb_A 148 FSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHN 227 (304)
T ss_dssp HHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCC
Confidence 4444444443 34566799999999998765322 221 245677777777788999999999888877654321
Q ss_pred hhHHhhHHHHHhhh-cCCCCccHHHHHHHHHHHHh
Q psy14014 579 NVIQSQVKPALDKL-NGDTDVDVKYFAQEAISSIA 612 (615)
Q Consensus 579 ~~~~~~~~~~l~~l-~~d~d~~v~~~a~~a~~~~~ 612 (615)
......+...+..+ ...+|.|+.+.+.-|++.+.
T Consensus 228 ~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~ 262 (304)
T 3ebb_A 228 IEGKAQCLSLISTILEVVQDLEATFRLLVALGTLI 262 (304)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 11122344444443 35678999999999999876
No 143
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=70.39 E-value=69 Score=29.77 Aligned_cols=134 Identities=15% Similarity=0.191 Sum_probs=79.8
Q ss_pred HHHHHHHHhHHHHhhhC-hHhHHHHHHHHHHHh-cC---CcchHHHH-HHHHHHHHHHHHhChHH------hhhchhHHH
Q psy14014 444 VRLAIIEYMPLLAGQLG-VEFFDEKLNALCMTW-LV---DHVYAIRE-AATLNLKKLVEQFGSEW------AQSTVIPKV 511 (615)
Q Consensus 444 vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~-l~---d~~~~vR~-~a~~~l~~l~~~~~~~~------~~~~i~~~l 511 (615)
+|...+..+..+.+... .+.....++|.+++. +. ...+..|+ ..+.++..++..++... ..+.+...-
T Consensus 45 vKkeiLkLiet~i~~~~d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~T 124 (321)
T 1w9c_A 45 VKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECT 124 (321)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 55566666666654332 233445566666543 22 22222232 23444555555554321 223344444
Q ss_pred HhhhcC---CCchHHHHHHHHHHHHHhhhChhhHH------HhhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhh
Q psy14014 512 VAMSRD---QNYLHRMTCLFCINVLAEACGPTVTA------NFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE 577 (615)
Q Consensus 512 ~~~~~d---~~~~~R~~a~~~l~~l~~~~~~~~~~------~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~ 577 (615)
+++.++ ..|..|.+....+..+...|-+..+. ..+...+.-..+.+.++|-..+..++..+.....
T Consensus 125 L~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~ 199 (321)
T 1w9c_A 125 LNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVA 199 (321)
T ss_dssp HHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHh
Confidence 556664 58889999999999998776554331 2355566667899999999999999988877663
No 144
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=69.71 E-value=42 Score=29.71 Aligned_cols=70 Identities=1% Similarity=-0.138 Sum_probs=49.9
Q ss_pred hhHHHHHHhhccCchhHHHHHHH----HHHHHHhhcChhhHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q psy14014 206 DIIPMFVNLAQDEQDSVRLLAVE----ACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKA 275 (615)
Q Consensus 206 ~ll~~l~~~~~d~~~~vr~~a~~----~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~ 275 (615)
...+.+.+...+++..+|+.++. .+..+.....++.....+++.+...+.|++..|+.+...+|..++..
T Consensus 108 ~~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~ 181 (235)
T 1t06_A 108 IAQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAIS 181 (235)
T ss_dssp SHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhh
Confidence 35667788888999999998887 33331111112345566778888888999999999999988887764
No 145
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=66.43 E-value=68 Score=28.15 Aligned_cols=98 Identities=14% Similarity=0.058 Sum_probs=62.6
Q ss_pred CCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHH----HhHHHHHHH
Q psy14014 177 QDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE----QLVMPTLRQ 252 (615)
Q Consensus 177 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~----~~l~~~l~~ 252 (615)
.+++|..-..+++.+.. . +....+.+..+.+.++..++.+...|+..+..+.++.|..-.. ..++..+.+
T Consensus 22 ~~~dw~~ileicD~I~~-----~-~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~ 95 (226)
T 3zyq_A 22 LETDWESILQICDLIRQ-----G-DTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKD 95 (226)
T ss_dssp SSCCHHHHHHHHHHHHT-----T-SSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhC-----C-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHH
Confidence 45677655444444331 1 1113456667777788899999999999999999988863211 123333333
Q ss_pred hc-CCCChHHHHHHHHHHHHHHHHhCccc
Q psy14014 253 CS-GDTSWRVRYMVADKFTDLQKAVGPEI 280 (615)
Q Consensus 253 ~~-~d~~~~vR~~~~~~l~~l~~~~~~~~ 280 (615)
++ ..++..||..+...+...+..++.+.
T Consensus 96 l~~~~~~~~Vk~kil~li~~W~~~f~~~~ 124 (226)
T 3zyq_A 96 LLKRQVEVNVRNKILYLIQAWAHAFRNEP 124 (226)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHTTTCG
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 33 23567899988888888888776654
No 146
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=66.35 E-value=46 Score=26.23 Aligned_cols=84 Identities=12% Similarity=0.006 Sum_probs=51.2
Q ss_pred ChhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChh
Q psy14014 161 TAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 240 (615)
Q Consensus 161 ~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~ 240 (615)
+......++|.++.-++|.+|.+...++..|..+. +.+.|.+.+.++.++..=+.. .+..+...++.+
T Consensus 25 ~~~~i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~~---------~~l~p~I~~vl~s~D~~W~yw---il~~lv~~~~~~ 92 (134)
T 3ut4_A 25 IDNEIEPIIFDLLKWLQDYNWPIAKDILPVVVLHQ---------SIAMPHILTILQGNDIMWKYW---VIKLMIPYLIYP 92 (134)
T ss_dssp CHHHHHHHHHHHHGGGSCTTSTTHHHHHHHHHHTH---------HHHHHHHHHHHHSSCHHHHHH---HHHHHGGGCCHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHcc---------HhhHHHHHHHHHcCChHHHHH---HHHHHHHcCCHH
Confidence 44455677788888889999999888888777652 356666666665544433322 333444455543
Q ss_pred hHHHhHHHHHHHhcCCC
Q psy14014 241 DVEQLVMPTLRQCSGDT 257 (615)
Q Consensus 241 ~~~~~l~~~l~~~~~d~ 257 (615)
....+.|-+..+...+
T Consensus 93 -~~~~l~~eL~rl~~~p 108 (134)
T 3ut4_A 93 -NKQLVKSELERLSSLE 108 (134)
T ss_dssp -HHHHHHHHHHHHHTCC
T ss_pred -HHHHHHHHHHHHHhCC
Confidence 2344556666655544
No 147
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=65.55 E-value=75 Score=28.36 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=44.5
Q ss_pred hchHHHhhhhcC-chhHHHHHHHHHHHHHHhhcChhHH----hhhHHHHHHHhhcCCCcchhhhHHhhhhhh
Q psy14014 90 CLLPPLESLATV-EETVVRDKAVESLRLISAQHSPHDL----EAHFVPLVQRLASGDWFTSRTSACGLFSVC 156 (615)
Q Consensus 90 ~l~~~l~~l~~~-~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~l~~l~~l~~~~~~~~r~~a~~~l~~~ 156 (615)
.+.|.|.....+ +...+|..+.-.++.+.+.-+++.+ ...++|+..+.....+.-.|..|..++..+
T Consensus 101 yLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 101 FLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp GTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 456666544333 3468899999999988877555432 345788888777766666777776666544
No 148
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=65.23 E-value=59 Score=27.04 Aligned_cols=97 Identities=10% Similarity=-0.027 Sum_probs=64.2
Q ss_pred CCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhH----HHhHHHHHHH
Q psy14014 177 QDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV----EQLVMPTLRQ 252 (615)
Q Consensus 177 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~ 252 (615)
..++|..-..+|+.+..= + ....+.+-.+.+.+++.++.|...|+..+..+.++.|..-. ...++.-+..
T Consensus 27 ~~~Dw~~ileicD~I~~~----~--~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~k 100 (171)
T 1juq_A 27 RQEDWEYIIGFCDQINKE----L--EGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIK 100 (171)
T ss_dssp SSCCHHHHHHHHHHHHHS----T--THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHcC----C--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHH
Confidence 356775544444443321 1 11334566677778889999999999999999998876322 1234455555
Q ss_pred hcC------CCChHHHHHHHHHHHHHHHHhCcc
Q psy14014 253 CSG------DTSWRVRYMVADKFTDLQKAVGPE 279 (615)
Q Consensus 253 ~~~------d~~~~vR~~~~~~l~~l~~~~~~~ 279 (615)
++. ..+..||..+.+.+...+..++.+
T Consensus 101 l~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~ 133 (171)
T 1juq_A 101 VVSPKYLGDRVSEKVKTKVIELLYSWTMALPEE 133 (171)
T ss_dssp HHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTTC
T ss_pred HhccccCCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 554 246789999999999888877653
No 149
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=64.91 E-value=55 Score=26.59 Aligned_cols=101 Identities=12% Similarity=0.080 Sum_probs=63.0
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhCccchhhhHHHHHHHhhcC-CcHHHHHHHHHHHHHHHhhccccchhHHHHHhhHHH-
Q psy14014 254 SGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKD-SEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPY- 331 (615)
Q Consensus 254 ~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~- 331 (615)
+..++|..=..++..+.. ......+.+..+.+.+.. .++.+...|+..|..+.++++.....+.....++.-
T Consensus 29 l~~~Dw~~ileicD~In~------~~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~ 102 (152)
T 3rru_A 29 VQTEDWGQFMHICDIINT------TQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKEN 102 (152)
T ss_dssp CCSCCHHHHHHHHHHHHH------STTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTT
T ss_pred CCCccHHHHHHHHHHHhC------CCccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHH
Confidence 445678654444433322 112345677778888874 578888889999999999988765433222334432
Q ss_pred HHHhhCC---CCHHHHHHHHHHHHhhchhhcc
Q psy14014 332 VKDLVAD---PNQHVKSALASVIMGLSPILGK 360 (615)
Q Consensus 332 l~~~~~d---~~~~vR~~~~~~l~~l~~~~g~ 360 (615)
+.+++.+ ....||.-++..+..-+..++.
T Consensus 103 L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~ 134 (152)
T 3rru_A 103 LVKLLNPRYNLPLDIQNRILNFIKTWSQGFPG 134 (152)
T ss_dssp TGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSS
T ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCC
Confidence 4444443 3457888888888777766654
No 150
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=62.94 E-value=84 Score=28.04 Aligned_cols=129 Identities=13% Similarity=0.149 Sum_probs=79.8
Q ss_pred chHHHHHHHHHHHHHHHHhChHHh----hhchhHHHHhhhcCCCchHHHHHHHHHHHHHhh-hChhh-------HH---H
Q psy14014 480 VYAIREAATLNLKKLVEQFGSEWA----QSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEA-CGPTV-------TA---N 544 (615)
Q Consensus 480 ~~~vR~~a~~~l~~l~~~~~~~~~----~~~i~~~l~~~~~d~~~~~R~~a~~~l~~l~~~-~~~~~-------~~---~ 544 (615)
..-+|-+++..+|.+++.-.++.. ..+++|..+...+.++--.|..|...+..+... .|-.+ |. .
T Consensus 115 fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~ 194 (268)
T 2fv2_A 115 FEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAM 194 (268)
T ss_dssp HHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHH
Confidence 456899999999998876444321 245888888888888888888888888887632 22222 21 2
Q ss_pred hhHHHHHhhCCCCCchHHHHHHHHHHHHhHhhhhhhHHhhHHHHHhhhc--------CCCCccHHHHHHHHHHHH
Q psy14014 545 FLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLN--------GDTDVDVKYFAQEAISSI 611 (615)
Q Consensus 545 ~i~~~l~~~~~D~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~--------~d~d~~v~~~a~~a~~~~ 611 (615)
-+-..+..+..++.+.+-..++++.-++...-. ..+.+..++..-+ -..|+.++.+-.+-+..+
T Consensus 195 vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~r---ar~aL~~~LP~~Lrd~tf~~~l~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 195 ILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPR---AREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHH---HHHHHHHHSCGGGTSSTTHHHHTSCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHH---HHHHHHHhCcHHhhChHHHHHHhcCHHHHHHHHHHHHhc
Confidence 233344456778888888888888888765432 1122222222211 134677777766665544
No 151
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=59.00 E-value=57 Score=26.04 Aligned_cols=65 Identities=14% Similarity=0.077 Sum_probs=45.6
Q ss_pred HHHHhhhcCCchHHHHHHHHhHHHHhhhChHhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q psy14014 432 SIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQ 497 (615)
Q Consensus 432 ~i~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~ 497 (615)
.+.+..++.+|..=....+-|..+......+ +...+++++++.|+++.+.+.-.|+.+|.-++..
T Consensus 15 ~V~~ATs~d~~~~pgylm~EIA~~T~~s~~~-~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~ 79 (140)
T 1vdy_A 15 MIDAVTSDEDKVAPVYKLEEICDLLRSSHVS-IVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGK 79 (140)
T ss_dssp HHHHTTCSCSSCCCHHHHHHHHHHHHHSCHH-HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhcCCCCCCcHHHHHHHHHHHHhcchh-HHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHh
Confidence 3445666777766555555555554333222 2357899999999999999999999999888865
No 152
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=53.53 E-value=91 Score=25.45 Aligned_cols=97 Identities=10% Similarity=-0.023 Sum_probs=61.7
Q ss_pred CCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhc-cCchhHHHHHHHHHHHHHhhcChhhHH----HhHHHH-H
Q psy14014 177 QDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQ-DEQDSVRLLAVEACVSIASLLSQSDVE----QLVMPT-L 250 (615)
Q Consensus 177 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~----~~l~~~-l 250 (615)
.++||..-...|+.+.. - +....+.+-.+.+.++ ..++.+...|+..+..+..+.|..-.. ..++.- +
T Consensus 30 ~~~Dw~~~leicD~I~~----~--~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~L 103 (157)
T 1elk_A 30 QSEDWALNMEICDIINE----T--EEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVL 103 (157)
T ss_dssp SSCCHHHHHHHHHHHHH----S--SSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHhC----C--CccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHH
Confidence 35677665555553332 1 1123345666677776 578889999999999999998864221 123333 4
Q ss_pred HHhcC---CCChHHHHHHHHHHHHHHHHhCcc
Q psy14014 251 RQCSG---DTSWRVRYMVADKFTDLQKAVGPE 279 (615)
Q Consensus 251 ~~~~~---d~~~~vR~~~~~~l~~l~~~~~~~ 279 (615)
.+.+. ++...||..+...+...+..++.+
T Consensus 104 vk~~~~k~~~~~~Vk~kil~li~~W~~~f~~~ 135 (157)
T 1elk_A 104 VRTILPKNNPPTIVHDKVLNLIQSWADAFRSS 135 (157)
T ss_dssp HHHHSTTTCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhccCCCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 44442 455689999998888888777654
No 153
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=52.87 E-value=26 Score=34.60 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=34.8
Q ss_pred ChHHHHHHHHhHHHHHHHhchhhh---HhhhHHHHHHhhccCchhHHHHHHHHHHHHH
Q psy14014 180 TPMVRRAAAGKLGELAKVVEVDYL---KTDIIPMFVNLAQDEQDSVRLLAVEACVSIA 234 (615)
Q Consensus 180 ~~~vR~~a~~~l~~l~~~~~~~~~---~~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~ 234 (615)
++.+-.-||.=+|++++..|.... .-..-..+.+++++++++||..|+.++..+.
T Consensus 418 d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 418 EKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred CcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 566666677777777777654211 1123455667777777777777777776653
No 154
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=52.85 E-value=1.2e+02 Score=26.47 Aligned_cols=75 Identities=8% Similarity=-0.046 Sum_probs=49.3
Q ss_pred hhhHHHHHHhhccCchhHHHHHHHHHHHHHhhcChhhHH----HhHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhCcc
Q psy14014 205 TDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE----QLVMPTLRQCSG-DTSWRVRYMVADKFTDLQKAVGPE 279 (615)
Q Consensus 205 ~~ll~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~----~~l~~~l~~~~~-d~~~~vR~~~~~~l~~l~~~~~~~ 279 (615)
.+.+-.+.+.++..++.+...|+..+..+..+.|..-.. ..++..+..++. .++..||..+.+.+...+..++..
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 120 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSS 120 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccc
Confidence 345566677778889999999999999988887653111 113333333332 456788888888877777766544
No 155
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=52.35 E-value=1.8e+02 Score=28.54 Aligned_cols=223 Identities=13% Similarity=0.137 Sum_probs=112.3
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhch--hhhHhhhHHHHHHhhccCc-hhHHHHHHHHHHHHHhhcC---hh
Q psy14014 167 ELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV--DYLKTDIIPMFVNLAQDEQ-DSVRLLAVEACVSIASLLS---QS 240 (615)
Q Consensus 167 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~---~~ 240 (615)
.++..++.++..+|++-|...-..+..+...+.. ......+-..+.+++.+.+ ..--...++.++.+...+. ++
T Consensus 162 ~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKe 241 (449)
T 2npp_B 162 KFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE 241 (449)
T ss_dssp HHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcH
Confidence 3455566777889999999988888776543322 2223344455555553322 2222344667777766654 22
Q ss_pred hHHHhHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHhCccch-hhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcccc
Q psy14014 241 DVEQLVMPTLRQCSGDTSWR-VRYMVADKFTDLQKAVGPEIT-KTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAY 318 (615)
Q Consensus 241 ~~~~~l~~~l~~~~~d~~~~-vR~~~~~~l~~l~~~~~~~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 318 (615)
.....+...+.-+-+.+... .-...+.++..+... +.. ...++..+++.---.++.=....+.-+..++..+++.
T Consensus 242 ehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK---Dp~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ 318 (449)
T 2npp_B 242 EHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK---DSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPS 318 (449)
T ss_dssp HHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHH---CGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhc---CcHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHH
Confidence 22222333333233322211 111233333343332 111 1122333333222233332234555666677666544
Q ss_pred chhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHh--hchhhcchhhhhhhHHHHHHhhcC---C--ChhHHHHHHHhhh
Q psy14014 319 NQENIIMTYILPYVKDLVADPNQHVKSALASVIMG--LSPILGKHNTVDHLLPLFLSQLKD---E--CPEVRLNIISNLD 391 (615)
Q Consensus 319 ~~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~--l~~~~g~~~~~~~l~p~l~~~l~d---~--~~~vr~~a~~~l~ 391 (615)
.. ..+...++..+.+++++++.+|-..|+..+.+ +...+. .....++|.+...+.. . +..||..+..++.
T Consensus 319 ef-~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~--~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk 395 (449)
T 2npp_B 319 EF-VKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLIS--DNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALK 395 (449)
T ss_dssp HH-HHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHH--TTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHH--hchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 32 13455677778889999999987776654422 111111 1233466766665421 2 4578988888877
Q ss_pred Hhhh
Q psy14014 392 CVNE 395 (615)
Q Consensus 392 ~l~~ 395 (615)
.+.+
T Consensus 396 ~l~e 399 (449)
T 2npp_B 396 LFME 399 (449)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6544
No 156
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=48.17 E-value=1.1e+02 Score=24.75 Aligned_cols=72 Identities=13% Similarity=0.033 Sum_probs=43.1
Q ss_pred HHHHHHHHhCCCChHHHHHHHHhHHHHHHHhchhh----hHhhhHHHHHHhhcc------CchhHHHHHHHHHHHHHhhc
Q psy14014 168 LRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY----LKTDIIPMFVNLAQD------EQDSVRLLAVEACVSIASLL 237 (615)
Q Consensus 168 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~ll~~l~~~~~d------~~~~vr~~a~~~l~~l~~~~ 237 (615)
.+..+.+-+++.++.+...++..+..+.+..|... ....++..+..++++ ....||...+..+...+..+
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 128 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL 128 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 33444444567777777777777777777666532 233455555555543 34567777776666666655
Q ss_pred Ch
Q psy14014 238 SQ 239 (615)
Q Consensus 238 ~~ 239 (615)
+.
T Consensus 129 ~~ 130 (149)
T 3g2s_A 129 PE 130 (149)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 157
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=48.13 E-value=1.7e+02 Score=27.12 Aligned_cols=60 Identities=10% Similarity=-0.001 Sum_probs=45.0
Q ss_pred CChHHHHHHHHHHHHHHHHhCccc------hhhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcc
Q psy14014 257 TSWRVRYMVADKFTDLQKAVGPEI------TKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLD 316 (615)
Q Consensus 257 ~~~~vR~~~~~~l~~l~~~~~~~~------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 316 (615)
.-+..|....+.+..+....-.-. .-..++..+...+++++.+|-..++..+..+..++.
T Consensus 134 eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~ 199 (321)
T 1w9c_A 134 EYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVA 199 (321)
T ss_dssp CSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHh
Confidence 468899999998888876432211 113466777788999999999999999988888764
No 158
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=45.90 E-value=2.1e+02 Score=27.52 Aligned_cols=224 Identities=12% Similarity=0.111 Sum_probs=108.0
Q ss_pred HHHHHHHHhCCCChHHHHHHHHhHHHHHHHhch--hhhHhhhHHHHHHhhccCc-hhHHHHHHHHHHHHHhhcCh---hh
Q psy14014 168 LRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV--DYLKTDIIPMFVNLAQDEQ-DSVRLLAVEACVSIASLLSQ---SD 241 (615)
Q Consensus 168 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~---~~ 241 (615)
++..+..++..+|++-|...-..+..+...+.. ......+-.++.+++.+.+ ..--...++.++.+...+.. +.
T Consensus 130 Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkee 209 (403)
T 3fga_B 130 FVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEE 209 (403)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHH
Confidence 334456777889999999988888776544332 1222334445555443322 11122456777777776642 22
Q ss_pred HHHhHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHhCccch-hhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhccccc
Q psy14014 242 VEQLVMPTLRQCSGDTSWR-VRYMVADKFTDLQKAVGPEIT-KTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYN 319 (615)
Q Consensus 242 ~~~~l~~~l~~~~~d~~~~-vR~~~~~~l~~l~~~~~~~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 319 (615)
....+...+.-+-+.++.. .-...+.++..+... +.. ...++..+++.---.++.=...-+.-+..++..+++..
T Consensus 210 hk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eK---Dp~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~ 286 (403)
T 3fga_B 210 HKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK---DSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSE 286 (403)
T ss_dssp HHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHH---CGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHh---CchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHH
Confidence 2222222222222222211 112233333333322 111 11222333332222333333345555666776665442
Q ss_pred hhHHHHHhhHHHHHHhhCCCCHHHHHHHHHHHHh--hchhhcc--hhhhhhhHHHHHHhhcCC-ChhHHHHHHHhhhHhh
Q psy14014 320 QENIIMTYILPYVKDLVADPNQHVKSALASVIMG--LSPILGK--HNTVDHLLPLFLSQLKDE-CPEVRLNIISNLDCVN 394 (615)
Q Consensus 320 ~~~~~~~~l~p~l~~~~~d~~~~vR~~~~~~l~~--l~~~~g~--~~~~~~l~p~l~~~l~d~-~~~vr~~a~~~l~~l~ 394 (615)
. ..+...++..+.+++++++.+|-..|+..+.+ +...+.. ....+.+.|.+.+..+.. +..||..+..++..+.
T Consensus 287 f-~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~ 365 (403)
T 3fga_B 287 F-VKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFM 365 (403)
T ss_dssp H-HHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 2 23455677777888999999887766554421 1111111 122333334444433332 5678888887776654
Q ss_pred h
Q psy14014 395 E 395 (615)
Q Consensus 395 ~ 395 (615)
+
T Consensus 366 e 366 (403)
T 3fga_B 366 E 366 (403)
T ss_dssp T
T ss_pred H
Confidence 3
No 159
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=45.14 E-value=1.7e+02 Score=26.12 Aligned_cols=96 Identities=10% Similarity=0.054 Sum_probs=57.9
Q ss_pred CCCchHHHHHHHHHHHHHhhhC--hhhHH-----HhhHHHHHhhCCC----CCchHHHHHHHHHHHHhHhhhh----hhH
Q psy14014 517 DQNYLHRMTCLFCINVLAEACG--PTVTA-----NFLLPTVLNMAGD----NVANVRFNVAKTLQKIGPILET----NVI 581 (615)
Q Consensus 517 d~~~~~R~~a~~~l~~l~~~~~--~~~~~-----~~i~~~l~~~~~D----~~~~vr~~a~~~l~~l~~~~~~----~~~ 581 (615)
+.++..++.+++++.++..+-. ...+. +.++..+...+.| .+.++|.+++..+-++.-.... ...
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~~e~ 180 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLEL 180 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCTTH
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccchHHH
Confidence 5578899999999999976533 22221 1222222222233 3678998888888777654321 122
Q ss_pred HhhHHHHHhhhc--C---CCCccHHHHHHHHHHHHh
Q psy14014 582 QSQVKPALDKLN--G---DTDVDVKYFAQEAISSIA 612 (615)
Q Consensus 582 ~~~~~~~l~~l~--~---d~d~~v~~~a~~a~~~~~ 612 (615)
...+..++.... . ..|.|..+.+.-|+|.+.
T Consensus 181 ~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~ 216 (253)
T 3gae_A 181 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLA 216 (253)
T ss_dssp HHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHH
Confidence 334444444321 1 248899999999999875
No 160
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=34.19 E-value=16 Score=34.72 Aligned_cols=97 Identities=10% Similarity=0.049 Sum_probs=55.5
Q ss_pred cCCCchHHHHHHHHHHHHHhhhC--hhhHH-----HhhHHHHHhhC----CCCCchHHHHHHHHHHHHhHhhhh----hh
Q psy14014 516 RDQNYLHRMTCLFCINVLAEACG--PTVTA-----NFLLPTVLNMA----GDNVANVRFNVAKTLQKIGPILET----NV 580 (615)
Q Consensus 516 ~d~~~~~R~~a~~~l~~l~~~~~--~~~~~-----~~i~~~l~~~~----~D~~~~vr~~a~~~l~~l~~~~~~----~~ 580 (615)
.+.++..++.+++++.++...-. ..... +.++..+...+ ...+.++|.+++..+-++.-.... ..
T Consensus 209 ~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~~e 288 (362)
T 3l3f_X 209 GNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLE 288 (362)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSCTT
T ss_pred CCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccchHH
Confidence 35678889999999999875432 11111 11222221111 223567888888777776644321 12
Q ss_pred HHhhHHHHHhhhc--C---CCCccHHHHHHHHHHHHh
Q psy14014 581 IQSQVKPALDKLN--G---DTDVDVKYFAQEAISSIA 612 (615)
Q Consensus 581 ~~~~~~~~l~~l~--~---d~d~~v~~~a~~a~~~~~ 612 (615)
....+..++.... . ..|.|+.+.+.-|+|.+.
T Consensus 289 l~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~ 325 (362)
T 3l3f_X 289 LLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLA 325 (362)
T ss_dssp HHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHH
Confidence 2233444444321 2 258899999999999876
No 161
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=33.13 E-value=36 Score=19.60 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=18.6
Q ss_pred HHHHHHHHhCCCChHHHHHHHHhHH
Q psy14014 168 LRSHFRNLCQDDTPMVRRAAAGKLG 192 (615)
Q Consensus 168 l~~~l~~l~~d~~~~vR~~a~~~l~ 192 (615)
+..+|.++-.+.++++|+++.+++.
T Consensus 8 l~~~fk~iY~~gddd~kram~KS~~ 32 (35)
T 2jtt_C 8 LMNVLKKIYEDGDDDMKRTINKAWV 32 (35)
T ss_dssp HHHHHHHHHTTCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 5566777778888888888777653
No 162
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=31.59 E-value=6.3e+02 Score=28.81 Aligned_cols=147 Identities=10% Similarity=0.013 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCcchhhhHHhhhhhhccCCChhhHHHHHHHHHHHhCCCChHHHHHHHHhHHHHHHHhch--hhhHhhh
Q psy14014 130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV--DYLKTDI 207 (615)
Q Consensus 130 ~l~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l 207 (615)
++.+...+..+....++..+..+...++.......+++++..+..-..+.+..--..+...|..++...+. ..+-..+
T Consensus 401 iL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l~~~a~~l 480 (1323)
T 3s4w_B 401 ILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNASAMRLNAAFV 480 (1323)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHTHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHHhHHHHHH
Q ss_pred HHHHHHhhccCchhHHHHHHHHHHHHHhhcChh---hHHHhHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC
Q psy14014 208 IPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS---DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVG 277 (615)
Q Consensus 208 l~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~ 277 (615)
.+++-.+-+=....+|+. ...+..++-.-+.+ .+...+.-.+.+.+..++...|+..+-.-..+...++
T Consensus 481 ~giLD~l~~l~~~QiRkl-f~iL~~laf~~~~~~~~~i~ddl~ivIRKQLs~~~~~~KriGIIGav~~v~~~~ 552 (1323)
T 3s4w_B 481 KGILDYLENMSPQQIRKI-FCILSTLAFSQQPGTSNHIQDDMHLVIRKQLSSTVFKYKLIGIIGAVTMAGIMA 552 (1323)
T ss_dssp HGGGGGGGGCCHHHHHHH-HHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhcCCCHHHHHHH-HHHHHHHHcCCCCCcchhhHHhHHHHHHHHHhCCchhhhhhhHHHHHHHHHHHH
No 163
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=31.18 E-value=4e+02 Score=26.34 Aligned_cols=69 Identities=12% Similarity=0.130 Sum_probs=50.9
Q ss_pred hhHHHHhhhc----------CCCchHHHHHHHHHHHHHhhhChhhH-H--HhhHHHHHhhCCCCCchHHHHHHHHHHHHh
Q psy14014 507 VIPKVVAMSR----------DQNYLHRMTCLFCINVLAEACGPTVT-A--NFLLPTVLNMAGDNVANVRFNVAKTLQKIG 573 (615)
Q Consensus 507 i~~~l~~~~~----------d~~~~~R~~a~~~l~~l~~~~~~~~~-~--~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~ 573 (615)
++..|.+++. +.++.+-..||.=+|.+++..+.... . -.....+.++++++|++||+.|..|+..++
T Consensus 396 llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 396 IFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 5556666554 23566677788889999888765432 2 246778888999999999999999999886
Q ss_pred Hh
Q psy14014 574 PI 575 (615)
Q Consensus 574 ~~ 575 (615)
.+
T Consensus 476 ~~ 477 (480)
T 1ho8_A 476 GY 477 (480)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 164
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=29.53 E-value=2.2e+02 Score=22.95 Aligned_cols=107 Identities=5% Similarity=-0.062 Sum_probs=62.3
Q ss_pred CCCChHHHHHHHHhHHHHHHHhchhhhHhhhHHHHHHhhcc-CchhHHHHHHHHHHHHHhhcChhhHHH----hHHH-HH
Q psy14014 177 QDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQD-EQDSVRLLAVEACVSIASLLSQSDVEQ----LVMP-TL 250 (615)
Q Consensus 177 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~----~l~~-~l 250 (615)
..++|..-..+|+.+..= +....+.+..+...++. .++.+...|+..+..+.++.|..-... .++. .+
T Consensus 30 ~~~Dw~~ileicD~In~~------~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L 103 (152)
T 3rru_A 30 QTEDWGQFMHICDIINTT------QDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENL 103 (152)
T ss_dssp CSCCHHHHHHHHHHHHHS------TTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTT
T ss_pred CCccHHHHHHHHHHHhCC------CccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHH
Confidence 456776544444443321 11233455666666663 577777889999999999988742221 2232 24
Q ss_pred HHhcCC---CChHHHHHHHHHHHHHHHHhCccchhhhHHHHH
Q psy14014 251 RQCSGD---TSWRVRYMVADKFTDLQKAVGPEITKTDLVQAF 289 (615)
Q Consensus 251 ~~~~~d---~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l 289 (615)
.+++++ ....||..+...+...+..++.+.....+...+
T Consensus 104 ~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~~p~l~~i~~~Y 145 (152)
T 3rru_A 104 VKLLNPRYNLPLDIQNRILNFIKTWSQGFPGGVDVSEVKEVY 145 (152)
T ss_dssp GGGGSGGGCCCHHHHHHHHHHHHHHHTCCSSSCCCHHHHHHH
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 444443 234788888888888887776554333343333
No 165
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=27.30 E-value=43 Score=32.55 Aligned_cols=96 Identities=11% Similarity=0.120 Sum_probs=54.5
Q ss_pred CCCchHHHHHHHHHHHHHhhhC--hhhHH-HhhHHHHHhhC--------CCCCchHHHHHHHHHHHHhHhhhh----hhH
Q psy14014 517 DQNYLHRMTCLFCINVLAEACG--PTVTA-NFLLPTVLNMA--------GDNVANVRFNVAKTLQKIGPILET----NVI 581 (615)
Q Consensus 517 d~~~~~R~~a~~~l~~l~~~~~--~~~~~-~~i~~~l~~~~--------~D~~~~vr~~a~~~l~~l~~~~~~----~~~ 581 (615)
+.++..++.+++++.++...-. ..... +.+.+.+...+ ...+.++|.+++..+-++.-.... ...
T Consensus 273 ~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~~el 352 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLEL 352 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSCTTH
T ss_pred CCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccchHHH
Confidence 5577888889998888865432 11111 11223333322 123567888887777766544321 122
Q ss_pred HhhHHHHHhhhcC-----CCCccHHHHHHHHHHHHh
Q psy14014 582 QSQVKPALDKLNG-----DTDVDVKYFAQEAISSIA 612 (615)
Q Consensus 582 ~~~~~~~l~~l~~-----d~d~~v~~~a~~a~~~~~ 612 (615)
...+..++..... ..|.|+.+.+.-|++.+.
T Consensus 353 ~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv 388 (425)
T 3pst_A 353 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLA 388 (425)
T ss_dssp HHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHH
Confidence 2334444443211 248899999999998875
No 166
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=27.04 E-value=1.8e+02 Score=21.07 Aligned_cols=13 Identities=23% Similarity=0.286 Sum_probs=6.9
Q ss_pred HHHHHHHhcCCCC
Q psy14014 246 VMPTLRQCSGDTS 258 (615)
Q Consensus 246 l~~~l~~~~~d~~ 258 (615)
.+..|.+..+||+
T Consensus 61 AIs~LDeISnDPN 73 (94)
T 2qzg_A 61 AIQYLDDISEDPN 73 (94)
T ss_dssp HHHHHHHHTTCTT
T ss_pred HHHHHHHhhcCCC
Confidence 3444555566665
No 167
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=25.48 E-value=4.9e+02 Score=25.50 Aligned_cols=224 Identities=11% Similarity=0.105 Sum_probs=117.0
Q ss_pred hhhHHHHHHhhcCCChhHHHHHHHhhhHhhhhh-chh-HHHHHHHHHhhhhhhhhccccchhhhhhhhHHHHHhh-hcCC
Q psy14014 365 DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVI-GIQ-QWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELA-EDSK 441 (615)
Q Consensus 365 ~~l~p~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~-~~~~~~~i~~~l~~l~~~~~~~~~~~~l~~~~i~~~~-~~~~ 441 (615)
..++-.++.++..+++.-|......|..+...+ +.. ..+... . ..+.+.. +...
T Consensus 161 ~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i----------------------~-nif~~fi~e~e~ 217 (449)
T 2npp_B 161 QKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQI----------------------N-NIFYRFIYETEH 217 (449)
T ss_dssp HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHH----------------------H-HHHHHHHHTCSC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------H-HHHHHHhcccCC
Confidence 345666777888888888888877777665433 111 111110 0 1112222 1222
Q ss_pred chHHHHHHHHhHHHHhhhCh---HhHHHHHHHHHHHhcCCcchHH-HHHHHHHHHHHHHHhChHHhhhchhHHHHhhhcC
Q psy14014 442 WRVRLAIIEYMPLLAGQLGV---EFFDEKLNALCMTWLVDHVYAI-REAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRD 517 (615)
Q Consensus 442 ~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~v-R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d 517 (615)
..--...++.++.+...+.. +.....+...++.+...+.... -..-..|+.+++.. .+. ....++..++..-=-
T Consensus 218 ~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK-Dp~-L~~~vi~~LLk~WP~ 295 (449)
T 2npp_B 218 HNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK-DST-LTEPVVMALLKYWPK 295 (449)
T ss_dssp CSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHH-CGG-GHHHHHHHHHHTCCS
T ss_pred CCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhc-CcH-hHHHHHHHHHHhCCC
Confidence 22223466666666665531 2222223333333333222111 11122333333332 111 223355555544334
Q ss_pred CCchHHHHHHHHHHHHHhhhChhhHHHh---hHHHHHhhCCCCCchHHHHHHHHHH--HHhHhhh--hhhHHhhHHHHHh
Q psy14014 518 QNYLHRMTCLFCINVLAEACGPTVTANF---LLPTVLNMAGDNVANVRFNVAKTLQ--KIGPILE--TNVIQSQVKPALD 590 (615)
Q Consensus 518 ~~~~~R~~a~~~l~~l~~~~~~~~~~~~---i~~~l~~~~~D~~~~vr~~a~~~l~--~l~~~~~--~~~~~~~~~~~l~ 590 (615)
.+...-...+.-+..+.+..++..|... ++..+.++++.+...|-..|+..+. .+.+.+. .....+.+.|.+.
T Consensus 296 tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~~n~~~IlPii~p~L~ 375 (449)
T 2npp_B 296 THSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLY 375 (449)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHhchhhhHHhhHHHHH
Confidence 4555556677778888888888777644 5556666788888888777766552 2222222 2234455555554
Q ss_pred hh-cCCCCccHHHHHHHHHHHHhh
Q psy14014 591 KL-NGDTDVDVKYFAQEAISSIAD 613 (615)
Q Consensus 591 ~l-~~d~d~~v~~~a~~a~~~~~~ 613 (615)
+. .+.=+..|+..|..+++.+.+
T Consensus 376 ~~s~~HWn~~V~~la~~vlk~l~e 399 (449)
T 2npp_B 376 RNSKTHWNKTIHGLIYNALKLFME 399 (449)
T ss_dssp SCTTCCSSTTHHHHHHHHHHHHHT
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHH
Confidence 43 455588999999999987654
No 168
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=23.77 E-value=6e+02 Score=26.00 Aligned_cols=106 Identities=12% Similarity=-0.010 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhChHHhh---------hchhHHHHh-hhcCCCchHHHHHHHHHHHHH
Q psy14014 465 DEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQ---------STVIPKVVA-MSRDQNYLHRMTCLFCINVLA 534 (615)
Q Consensus 465 ~~~l~~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~---------~~i~~~l~~-~~~d~~~~~R~~a~~~l~~l~ 534 (615)
.+.-++++..+++++...+...++..+..+...+...... ..+...+.. +...++...|..+...++.+.
T Consensus 315 f~~~l~~l~~lL~~~~~~~~~kGL~Ll~~ll~~l~~~sl~~~~ld~~~~~~~~q~L~~v~~~~P~~~lR~~a~~vl~~~I 394 (596)
T 4f52_E 315 LQFNMGHIEVFLQRTEESVISKGLELLENSLLRIEDNSLLYQYLEIKSFLTVPQGLVKVMTLCPIETLRKKSLAMLQLYI 394 (596)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSSCTTCBCGGGGGSHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCchHHHHhHHHHHHHHHHhccCccCChhhhchhhHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHH
Confidence 3444566777788888888888888888888776543211 112223333 346788899999999999988
Q ss_pred hhhChhhHHHhhHHHHHhhCCCCCchHHHHHHHHHHHHh
Q psy14014 535 EACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIG 573 (615)
Q Consensus 535 ~~~~~~~~~~~i~~~l~~~~~D~~~~vr~~a~~~l~~l~ 573 (615)
..++.+. .-.++..+.+ +...+.++..++..+..-+
T Consensus 395 ~~~~~e~-R~~iL~~LL~--~~~~~~v~~~lI~~~KdeI 430 (596)
T 4f52_E 395 NKLDSQG-KYTLFRCLLN--TSNHSGVEAFIIQNIKNQI 430 (596)
T ss_dssp HHBCHHH-HHHHHHHHHH--HHCCHHHHHHHHHHHHHHH
T ss_pred HhCChHH-HHHHHHHHHh--cCCChHHHHHHHHHHHHHH
Confidence 7777543 2223333322 4466777777777776544
Done!