RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14014
(615 letters)
>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat. The HEAT repeat family is
related to armadillo/beta-catenin-like repeats (see
pfam00514). These EZ repeats are found in subunits of
cyanobacterial phycocyanin lyase and other proteins and
probably carry out a scaffolding role.
Length = 55
Score = 35.1 bits (81), Expect = 0.005
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 181 PMVRRAAAGKLGELAKVVE--VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSI 233
VR AAA LG LA + +++P + L +D+ D VR A A I
Sbjct: 1 WEVREAAALALGALAGGGPELLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats. An approximately
40 amino acid long tandemly repeated sequence motif
first identified in the Drosophila segment polarity gene
armadillo; these repeats were also found in the
mammalian armadillo homolog beta-catenin, the junctional
plaque protein plakoglobin, the adenomatous polyposis
coli (APC) tumor suppressor protein, and a number of
other proteins. ARM has been implicated in mediating
protein-protein interactions, but no common features
among the target proteins recognized by the ARM repeats
have been identified; related to the HEAT domain; three
consecutive copies of the repeat are represented by this
alignment model.
Length = 120
Score = 36.5 bits (85), Expect = 0.007
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 6/110 (5%)
Query: 132 PLVQRLASGDWFTSRTSACGLFSVC---YPRVTAGVKAELRSHFRNLCQDDTPMVRRAAA 188
LV L+S D R +A L ++ + A V+A L + + V +AA
Sbjct: 11 ALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAAL 70
Query: 189 GKLGELAKVVE---VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIAS 235
L LA E + L+ +P VNL + ++ A A ++AS
Sbjct: 71 WALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120
Score = 30.7 bits (70), Expect = 0.72
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 16/119 (13%)
Query: 206 DIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD------VEQLVMPTLRQCSGDTSW 259
+P V+L ++V+ EA ++++L + ++ VE +P L Q
Sbjct: 7 GGLPALVSLLSSSDENVQR---EAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDE 63
Query: 260 RVRYMVADKFTDLQKAVGPE-----ITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQ 313
V +L A GPE + + V LL S +++ A + +
Sbjct: 64 EVVKAALWALRNL--AAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120
>gnl|CDD|202500 pfam02985, HEAT, HEAT repeat. The HEAT repeat family is related to
armadillo/beta-catenin-like repeats (see pfam00514).
Length = 31
Score = 33.3 bits (77), Expect = 0.013
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 168 LRSHFRNLCQDDTPMVRRAAAGKLGELAKVV 198
L L D P VR AAA LG LA+V+
Sbjct: 1 LLPLLLELLNDPDPEVREAAAEALGALAEVL 31
Score = 31.7 bits (73), Expect = 0.054
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 207 IIPMFVNLAQDEQDSVRLLAVEACVSIASLL 237
++P+ + L D VR A EA ++A +L
Sbjct: 1 LLPLLLELLNDPDPEVREAAAEALGALAEVL 31
Score = 30.9 bits (71), Expect = 0.095
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 285 LVQAFQMLLKDSEAEVRAAAANKVRDFCQNL 315
L+ LL D + EVR AAA + + L
Sbjct: 1 LLPLLLELLNDPDPEVREAAAEALGALAEVL 31
Score = 30.6 bits (70), Expect = 0.12
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 546 LLPTVLNMAGDNVANVRFNVAKTLQKIGPIL 576
LLP +L + D VR A+ L + +L
Sbjct: 1 LLPLLLELLNDPDPEVREAAAEALGALAEVL 31
Score = 30.2 bits (69), Expect = 0.17
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 246 VMPTLRQCSGDTSWRVRYMVADKFTDLQKAV 276
++P L + D VR A+ L + +
Sbjct: 1 LLPLLLELLNDPDPEVREAAAEALGALAEVL 31
Score = 28.6 bits (65), Expect = 0.55
Identities = 12/24 (50%), Positives = 12/24 (50%)
Query: 367 LLPLFLSQLKDECPEVRLNIISNL 390
LLPL L L D PEVR L
Sbjct: 1 LLPLLLELLNDPDPEVREAAAEAL 24
Score = 28.6 bits (65), Expect = 0.59
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 507 VIPKVVAMSRDQNYLHRMTCLFCINVLAEAC 537
++P ++ + D + R + LAE
Sbjct: 1 LLPLLLELLNDPDPEVREAAAEALGALAEVL 31
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats. This family includes multiple
HEAT repeats.
Length = 88
Score = 34.2 bits (79), Expect = 0.023
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 17/103 (16%)
Query: 15 IAVLIDEL-KNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALA 72
+ L++ L + D ++R + + ALG+ E +P L E + D D EV A A
Sbjct: 1 LEALLEALLSDPDPEVRAAAAR-------ALGELGDP-EALPALLELLKDPDPEVRRAAA 52
Query: 73 EQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLR 115
E LG +G PE + LL E L ++ VVR A +L
Sbjct: 53 EALG----KLGDPEALPALL---ELLQDDDDAVVRAAAASALA 88
Score = 33.1 bits (76), Expect = 0.067
Identities = 25/92 (27%), Positives = 32/92 (34%), Gaps = 16/92 (17%)
Query: 175 LCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIA 234
L D P VR AAA LGEL + +P + L +D VR A EA +
Sbjct: 8 LLSDPDPEVRAAAARALGELGD--------PEALPALLELLKDPDPEVRRAAAEALGKLG 59
Query: 235 SLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVA 266
+P L + D V A
Sbjct: 60 D--------PEALPALLELLQDDDDAVVRAAA 83
Score = 30.0 bits (68), Expect = 0.70
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 173 RNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEA 229
L +D P VRRAAA LG+L + L L D+ VR A A
Sbjct: 37 LELLKDPDPEVRRAAAEALGKLGDPEALPALLE-------LLQDDDDAVVRAAAASA 86
Score = 28.8 bits (65), Expect = 1.9
Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 17/98 (17%)
Query: 513 AMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKI 572
A+ D + R L E P LP +L + D VR A+ L K+
Sbjct: 7 ALLSDPDPEVR---AAAARALGELGDPEA-----LPALLELLKDPDPEVRRAAAEALGKL 58
Query: 573 GPILETNVIQSQVKPAL-DKLNGDTDVDVKYFAQEAIS 609
G + PAL + L D D V+ A A++
Sbjct: 59 G--------DPEALPALLELLQDDDDAVVRAAAASALA 88
>gnl|CDD|221732 pfam12719, Cnd3, Nuclear condensing complex subunits, C-term
domain. The Cnd1-3 proteins are the three non-SMC
(structural maintenance of chromosomes) proteins that go
to make up the mitotic condensation complex along with
the two SMC protein families, XCAP-C and XCAP-E, (or in
the case of fission yeast, Cut3 and Cut14). The
five-member complex seems to be conserved from yeasts to
vertebrates. This domain is the C-terminal,
cysteine-rich domain of Cnd3. The complex shuttles
between the nucleus, during mitosis, and the cytoplasm
during the rest of the cycle. Thus this family is made
up of the C-termini of XCAP-Gs, Ycg1 and Ycs5 members.
Length = 302
Score = 33.8 bits (78), Expect = 0.20
Identities = 20/122 (16%), Positives = 43/122 (35%), Gaps = 16/122 (13%)
Query: 198 VEVDYLKTDIIPMFVNLA-QDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGD 256
+ + ++ + A + +R L ++ C+ + LL + E+ +P L QC
Sbjct: 19 LSPNISLESLLDTLILPAVRSHDADIRELGLK-CLGLCCLLDKDLAEE-NLPLLLQCFSK 76
Query: 257 TSWRVRYMVADKFTDL-------------QKAVGPEITKTDLVQAFQMLLKDSEAEVRAA 303
++ DL + ++ L++ L + EV+A
Sbjct: 77 GDEELKITALRALFDLLLLHGVDLFDSEGDEDSTEDVDSVSLLKILYKFLDSEDPEVQAI 136
Query: 304 AA 305
AA
Sbjct: 137 AA 138
>gnl|CDD|237512 PRK13800, PRK13800, putative oxidoreductase/HEAT repeat-containing
protein; Provisional.
Length = 897
Score = 33.3 bits (76), Expect = 0.44
Identities = 43/150 (28%), Positives = 57/150 (38%), Gaps = 40/150 (26%)
Query: 178 DDTPMVRRAAAGKLGELAKVVE-----VDYLKT----------DII--------PMFVNL 214
D VRRAAA L EL +V+ D+L + D++ +F
Sbjct: 663 DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAA 722
Query: 215 AQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQK 274
D VR+ AV A VS+ DVE + + D + VR VA L
Sbjct: 723 LGDPDHRVRIEAVRALVSV------DDVESVAG-----AATDENREVRIAVAKGLATLGA 771
Query: 275 AVGPEITKTDLVQAFQMLLKDSEAEVRAAA 304
P D V+A L D + VRAAA
Sbjct: 772 GGAPA---GDAVRA---LTGDPDPLVRAAA 795
Score = 31.4 bits (71), Expect = 1.7
Identities = 35/138 (25%), Positives = 46/138 (33%), Gaps = 22/138 (15%)
Query: 173 RNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVS 232
R L D P+VR AA L EL D + + VR A A
Sbjct: 781 RALTGDPDPLVRAAALAALAELGCP-------PDDVAAATAALRASAWQVRQGAARA--- 830
Query: 233 IASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQML 292
L+ + + V P L + D VR K L A+ A
Sbjct: 831 ----LAGAAADVAV-PALVEALTDPHLDVR-----KAAVL--ALTRWPGDPAARDALTTA 878
Query: 293 LKDSEAEVRAAAANKVRD 310
L DS+A+VRA A +
Sbjct: 879 LTDSDADVRAYARRALAH 896
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase
inhibitor.
Length = 530
Score = 32.3 bits (73), Expect = 0.85
Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 39/188 (20%)
Query: 236 LLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQ---ML 292
L + +L++ L T +V + + F+DLQ +GP +T + AF+ L
Sbjct: 45 LTETKTIPELIIADLNL----TILKVN-LASSNFSDLQTRLGPNLTHRERC-AFEDCLGL 98
Query: 293 LKDSEAEVRAAAA---------NKVRDFCQN--------LDAY----NQENIIMTYILP- 330
L D+ +++ A + N V N LD + N+ N MTY LP
Sbjct: 99 LDDTISDLTTAISKLRSSSPEFNDVSMLLSNAMTNQDTCLDGFSTSDNENNNDMTYELPE 158
Query: 331 YVKDLVADPNQHVKSALA--SVIMGLSPILGKHNTVDHLLPLFLSQ-----LKDECPEVR 383
+K+ + D + H+ ++LA I G P + VD P ++S L+ E
Sbjct: 159 NLKESILDISNHLSNSLAMLQNISGKIPGPKS-SEVDVEYPSWVSGNDRRLLEAPVQETN 217
Query: 384 LNIISNLD 391
+N+ +D
Sbjct: 218 VNLSVAID 225
>gnl|CDD|192556 pfam10363, DUF2435, Protein of unknown function (DUF2435). This is
a conserved region of approximately 400 residues which
is found only in eukaryotes. It is associated with HEAT
domains pfam02985 in all members. The function is not
known.
Length = 93
Score = 29.5 bits (67), Expect = 1.2
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 363 TVDHLLPLFLSQLKDECPEVRLNIISNL 390
+ +L LFLSQLKDE V LN I L
Sbjct: 41 DLPKVLTLFLSQLKDEDSFVYLNAIKGL 68
>gnl|CDD|227508 COG5181, HSH155, U2 snRNP spliceosome subunit [RNA processing and
modification].
Length = 975
Score = 31.1 bits (70), Expect = 2.5
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 327 YILPYVKDLVADPNQHVKSALASVIMGLS---PILGKHNTVDHLLPLFLSQLKDECPEVR 383
I P ++D + D + + +VI L P G + HLL L + + P V
Sbjct: 841 SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVI 900
Query: 384 LNIISNLDCVNEVIGIQ 400
+ ++ V+G
Sbjct: 901 QSFDEGMESFATVLGSG 917
>gnl|CDD|221731 pfam12717, Cnd1, non-SMC mitotic condensation complex subunit 1.
The three non-SMC (structural maintenance of
chromosomes) subunits of the mitotic condensation
complex are Cnd1-3. The whole complex is essential for
viability and the condensing of chromosomes in mitosis.
Length = 171
Score = 29.4 bits (67), Expect = 3.0
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 362 NTVDHLLPLFLSQLKDECPEVR---LNIISNL 390
N V+ P + L+DE P VR L ++++L
Sbjct: 21 NLVEPYTPNLYACLRDEDPYVRKTALLVLTHL 52
>gnl|CDD|177369 PHA02528, 43, DNA polymerase; Provisional.
Length = 881
Score = 30.4 bits (69), Expect = 3.2
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 455 LAGQLGVEFF----DEKLNALCMTWLVDHV-YAIREAATLNLKKLVEQFGS 500
L GQL +++ +E LN LC T D+V Y ++ +NL LVE+ G
Sbjct: 574 LFGQLAIQWIERKMNEYLNKLCKTEDEDYVIYGDTDSIYVNLDPLVEKVGE 624
>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and
conversion].
Length = 335
Score = 29.9 bits (67), Expect = 4.6
Identities = 43/216 (19%), Positives = 68/216 (31%), Gaps = 37/216 (17%)
Query: 173 RNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVS 232
R L D+ P VR AAA LGEL + P+ L DE + VR A A
Sbjct: 80 RELLSDEDPRVRDAAADALGELG-------DPEAVPPLVELLENDENEGVRAAAARALGK 132
Query: 233 IASLLSQSDVEQLVMPTLRQCSG----DTSWRVRYMVADKFTDLQKAVGPEITKTDLVQA 288
+ + + + + + VR A E+ + +
Sbjct: 133 LGDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAA--------EALGELGDPEAIPL 184
Query: 289 FQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALA 348
LL+D +A+VR AAA+ + + + LA
Sbjct: 185 LIELLEDEDADVRRAAASALGQLGSENVEAADLLVKALSD--------ESLEVRKAALLA 236
Query: 349 SVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRL 384
LG+ + + L L+DE + L
Sbjct: 237 ---------LGEIGDEEAVDAL-AKALEDEDVILAL 262
Score = 29.5 bits (66), Expect = 4.8
Identities = 55/222 (24%), Positives = 78/222 (35%), Gaps = 37/222 (16%)
Query: 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAE 73
L+ L++ED+ +RL++ L + E +P L E + DED V A A+
Sbjct: 45 ADELLKLLEDEDLLVRLSAAVALGELGSE--------EAVPLLRELLSDEDPRVRDAAAD 96
Query: 74 QLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPL 133
LG G L +E L E VR A +L + D A L
Sbjct: 97 ALGEL-----GDPEAVPPL--VELLENDENEGVRAAAARALGKL------GDERALDPLL 143
Query: 134 VQRLASGDWFTSRTSACGLFSVCYPRVTAGVKA------ELRSHFRNLCQDDTPMVRRAA 187
A D + +A ++ R A E L +D+ VRRAA
Sbjct: 144 ---EALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPEAIPLLIELLEDEDADVRRAA 200
Query: 188 AGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEA 229
A LG+L + V DE VR A+ A
Sbjct: 201 ASALGQLGSENVE------AADLLVKALSDESLEVRKAALLA 236
>gnl|CDD|170047 PRK09687, PRK09687, putative lyase; Provisional.
Length = 280
Score = 29.3 bits (66), Expect = 5.4
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 14/93 (15%)
Query: 291 MLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASV 350
+ L+D A VRA+A N C+ Y+ + + + I + K V+ A+A
Sbjct: 98 LALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTN------VRFAVAFA 151
Query: 351 IMGLSPILGKHNTVDHLLPLFLSQLKDECPEVR 383
+ ++ +PL ++ LKD +VR
Sbjct: 152 LSVINDEAA--------IPLLINLLKDPNGDVR 176
>gnl|CDD|193231 pfam12755, Vac14_Fab1_bd, Vacuolar 14 Fab1-binding region. Vac14
is a scaffold for the Fab1 kinase complex, a complex
that allows for the dynamic interconversion of PI3P and
PI(3,5)P2p (phosphoinositide phosphate (PIP) lipids,
that are generated transiently on the cytoplasmic face
of selected intracellular membranes). This
interconversion is regulated by at least five proteins
in yeast: the lipid kinase Fab1p, lipid phosphatase
Fig4p, the Fab1p activator Vac7p, the Fab1p inhibitor
Atg18p, and Vac14p, a protein required for the activity
of both Fab1p and Fig4p. This domain appears to be the
one responsible for binding to Fab1. The full length
Vac14 in yeasts is likely to be a protein carrying a
succession of HEAT repeats, most of which have now
degenerated. This regulatory system is crucial for the
proper functioning of the mammalian nervous system.
Length = 97
Score = 27.5 bits (62), Expect = 7.0
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 544 NFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQ--SQVKPALDKLNGDTDVDVK 601
+ ++P VL D + VR+ ++L I + V+ + + AL KL D+D VK
Sbjct: 26 DEIIPPVLACFTDQDSRVRYYACESLYNIAKVARGEVLPYFNDIFDALCKLFADSDPSVK 85
Query: 602 YFAQ 605
A+
Sbjct: 86 NGAE 89
>gnl|CDD|237283 PRK13106, ubiA, prenyltransferase; Reviewed.
Length = 300
Score = 28.9 bits (65), Expect = 8.3
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 323 IIMTYILPYVKDLVADPNQHVKSALASVIMG 353
I M+Y PY+K A N H+ S +
Sbjct: 130 IAMSY--PYMKRYTAFANYHLASIQGLAVFS 158
>gnl|CDD|227427 COG5096, COG5096, Vesicle coat complex, various subunits
[Intracellular trafficking and secretion].
Length = 757
Score = 28.9 bits (65), Expect = 8.6
Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 22/106 (20%)
Query: 208 IPMFVNLAQDEQDSVRLLAVEA--CVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMV 265
+ QD + +R A+ + + LL ++ +++ D VR
Sbjct: 94 VNTIQKDLQDPNEEIRGFALRTLSLLRVKELLGN------IIDPIKKLLTDPHAYVRKTA 147
Query: 266 ADKFT-------DLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAA 304
A DL +G +LV DS+ V A A
Sbjct: 148 ALAVAKLYRLDKDLYHELGLIDILKELVA-------DSDPIVIANA 186
>gnl|CDD|173571 PTZ00378, PTZ00378, hypothetical protein; Provisional.
Length = 518
Score = 29.1 bits (65), Expect = 8.8
Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 15/99 (15%)
Query: 225 LAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYM---------VADKFTDLQKA 275
A +CV ++ + R+ R +FT L+
Sbjct: 21 EAARSCVDAHPA----RPKEYLAAYFREKCSGDEIRALVHNEVLSPAGETVLRFT-LELL 75
Query: 276 VGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQN 314
G E++ L+ +D EA+ A + QN
Sbjct: 76 NGMEVSSGALLSPSHG-ERDGEADATLDPAEYTTEALQN 113
>gnl|CDD|180760 PRK06934, PRK06934, flavodoxin; Provisional.
Length = 221
Score = 28.3 bits (63), Expect = 9.1
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 272 LQKAVGPEITKTDLVQAF----QMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENI---I 324
+Q+ G ++ + + V+ + LLK +E EV+ ++R+ QNL Y+Q I I
Sbjct: 80 IQEETGGDLFRIETVKPYPRQHDPLLKYAEQEVKEGGRPEMREKIQNLADYDQIFIGYPI 139
Query: 325 MTYILPYV 332
Y +P V
Sbjct: 140 WWYKMPMV 147
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.388
Gapped
Lambda K H
0.267 0.0715 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 31,221,701
Number of extensions: 3114887
Number of successful extensions: 2585
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2572
Number of HSP's successfully gapped: 51
Length of query: 615
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 512
Effective length of database: 6,369,140
Effective search space: 3260999680
Effective search space used: 3260999680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.7 bits)