RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14014
(615 letters)
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 601 bits (1550), Expect = 0.0
Identities = 467/609 (76%), Positives = 522/609 (85%), Gaps = 23/609 (3%)
Query: 4 SDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYD 63
+ + DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+TIYD
Sbjct: 1 AAADGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYD 60
Query: 64 EDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP 123
EDEVLLALAEQLGTFT VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +HSP
Sbjct: 61 EDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSP 120
Query: 124 HDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMV 183
DLEAHFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDTPMV
Sbjct: 121 SDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMV 180
Query: 184 RRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE 243
RRAAA KLGE AKV+E+D +K++IIPMF NLA DEQDSVRLLAVEACV+IA LL Q D+E
Sbjct: 181 RRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLE 240
Query: 244 QLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAA 303
LVMPTLRQ + D SWRVRYMVADKFT+LQKAVGPEITKTDLV AFQ L+KD EAEVRAA
Sbjct: 241 ALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAA 300
Query: 304 AANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNT 363
A++KV++FC+NL A +EN+IM+ ILP +K+LV+D NQHVKSALASVIMGLSPILGK NT
Sbjct: 301 ASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNT 360
Query: 364 VDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEF 423
++HLLPLFL+QLKDECPEVRLNIISNLDCVNEVIGI+Q
Sbjct: 361 IEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQ---------------------- 398
Query: 424 FDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAI 483
+ L IVELAED+KWRVRLAIIEYMPLLAGQLGVEFFDEKLN+LCM WLVDHVYAI
Sbjct: 399 LSQSLLPA-IVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAI 457
Query: 484 REAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTA 543
REAAT NLKKLVE+FG EWA +T+IPKV+AMS D NYLHRMT LFCINVL+E CG +T
Sbjct: 458 REAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITT 517
Query: 544 NFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKYF 603
+LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+KL D DVDVKYF
Sbjct: 518 KHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYF 577
Query: 604 AQEAISSIA 612
AQEA++ ++
Sbjct: 578 AQEALTVLS 586
Score = 201 bits (513), Expect = 3e-57
Identities = 101/532 (18%), Positives = 192/532 (36%), Gaps = 34/532 (6%)
Query: 10 DSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLL 69
L P L E+ +R +++ L I+ +P + +
Sbjct: 86 HCLLPP--LESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSR 143
Query: 70 ALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAH 129
A L + L +L + + +VR A L + ++++
Sbjct: 144 TSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSE 203
Query: 130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA-GVKAELRSHFRNLCQDDTPMVRRAAA 188
+P+ LAS + + R A + ++A + R +D + VR A
Sbjct: 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVA 263
Query: 189 GKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVM- 247
K EL K V + KTD++P F NL +D + VR A LS E ++M
Sbjct: 264 DKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS 323
Query: 248 ---PTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAA 304
P +++ D + V+ +A L +G + T L+ F LKD EVR
Sbjct: 324 QILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNI 383
Query: 305 ANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTV 364
+ + + + + +LP + +L D V+ A+ + L+ LG
Sbjct: 384 ISNLDCVNEVIGI----RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFD 439
Query: 365 DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFF 424
+ L L ++ L D +R SNL L + G E+
Sbjct: 440 EKLNSLCMAWLVDHVYAIREAATSNL----------------------KKLVEKFGKEWA 477
Query: 425 DEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIR 484
+ ++ ++ D + R+ + + +L+ G + + + + D V +R
Sbjct: 478 HATIIPK-VLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVR 536
Query: 485 EAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEA 536
+L+K+ + QS V P + +++DQ+ + + VL+ A
Sbjct: 537 FNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSLA 588
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive
structure, iron sulfur proteins, nitrogen fixation;
2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Length = 244
Score = 78.8 bits (194), Expect = 1e-16
Identities = 46/229 (20%), Positives = 72/229 (31%), Gaps = 74/229 (32%)
Query: 172 FRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACV 231
L +D +VRRA A +L L DE VR+
Sbjct: 79 LTPLIRDSDEVVRRAVAYRLPREQ---------------LSALMFDEDREVRI------- 116
Query: 232 SIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKF---------TDLQKAVGPEITK 282
++A L +EQ+ + D + VR V + D + V + K
Sbjct: 117 TVADRLPLEQLEQM--------AADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAK 168
Query: 283 TDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQH 342
++ ++ +D E EVR A L + +L+ DP+
Sbjct: 169 RLPEESLGLMTQDPEPEVRRIVA-------SRLRG------------DDLLELLHDPDWT 209
Query: 343 VKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLD 391
V+ A +H L +L + PEVRL I L
Sbjct: 210 VRLAAV----------------EHASLEALRELDEPDPEVRLAIAGRLG 242
Score = 64.1 bits (156), Expect = 1e-11
Identities = 48/282 (17%), Positives = 77/282 (27%), Gaps = 98/282 (34%)
Query: 212 VNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTD 271
V D R +AV L D+ VR VA
Sbjct: 56 VQYLADPFWERRAIAVRYSPV---------------EALTPLIRDSDEVVRRAVA----- 95
Query: 272 LQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPY 331
+ E L+ D + EVR A L L
Sbjct: 96 --YRLPRE--------QLSALMFDEDREVRITVA-------DRLP------------LEQ 126
Query: 332 VKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNL- 390
++ + AD + V++ + L F+ +DE +VR + L
Sbjct: 127 LEQMAADRDYLVRAYVVQ------------RIPPGRLFRFM---RDEDRQVRKLVAKRLP 171
Query: 391 -DCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAII 449
+ + + + VR + +L ++EL D W VRLA +
Sbjct: 172 EESLGLMTQDPEPEVRRIVAS----------------RLRGDDLLELLHDPDWTVRLAAV 215
Query: 450 EYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNL 491
E+ L A + L + +R A L
Sbjct: 216 EHASLEALRE----------------LDEPDPEVRLAIAGRL 241
Score = 34.9 bits (80), Expect = 0.048
Identities = 35/185 (18%), Positives = 54/185 (29%), Gaps = 54/185 (29%)
Query: 433 IVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLK 492
+ L DS VR A+ +P E+L+AL + D +R
Sbjct: 79 LTPLIRDSDEVVRRAVAYRLP-----------REQLSAL----MFDEDREVRITV----- 118
Query: 493 KLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLA---------EACGPTVTA 543
A + ++ M+ D++YL R + I V
Sbjct: 119 ----------ADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAK 168
Query: 544 NFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKYF 603
++ M D VR VA L+ L +L D D V+
Sbjct: 169 RLPEESLGLMTQDPEPEVRRIVASRLR---------------GDDLLELLHDPDWTVRLA 213
Query: 604 AQEAI 608
A E
Sbjct: 214 AVEHA 218
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger,
ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Length = 1230
Score = 82.5 bits (202), Expect = 2e-16
Identities = 89/660 (13%), Positives = 194/660 (29%), Gaps = 68/660 (10%)
Query: 8 PDDSLYPIA-VLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGE--------LIPFLT 58
+ + I L + ++ QLR S L T+ L + + LT
Sbjct: 80 KEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLT 139
Query: 59 ETIYDED------EVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVE 112
I ++ E L +A+ L + + +L L T VR + +
Sbjct: 140 SAIAKQEDVSVQLEALDIMADMLSRQGGLLV--NFHPSILTCLLPQLTSPRLAVRKRTII 197
Query: 113 SLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHF 172
+L + L+ L+ D ++ + + + + L
Sbjct: 198 ALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKII 257
Query: 173 R---NLCQDDTPMVRRAAAGKLGELAKVVEVD---YLKTDIIPMFVNLAQDEQDSVRLLA 226
C D +R + + ++ T I L D +
Sbjct: 258 PLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDED 317
Query: 227 VEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITK--TD 284
+ A D + D SW+VR A + + +
Sbjct: 318 EDENAMDADGGDDDDQGSDDEYSDDD---DMSWKVRRAAAKCLDAVVSTRHEMLPEFYKT 374
Query: 285 LVQAFQMLLKDSEAEVRAAAAN----------KVRDFCQNLDAYNQENIIMTYILPYVKD 334
+ A K+ E V+A + V+ + + DA Q +T + V +
Sbjct: 375 VSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPN 434
Query: 335 LVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN 394
+V ++ +K +L L+ + L P + II +L+ +
Sbjct: 435 IVKALHKQMKEKSVKTRQCCFNMLT------ELVNVLPGALTQHIPVLVPGIIFSLNDKS 488
Query: 395 EVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNAL--SIVELAEDSKWRVRLAIIEYM 452
+++ + + ++ + F + AL +V D +++ +
Sbjct: 489 SSS-----NLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVT 543
Query: 453 PLLAGQLGVEF------FDEKLNALCMTWL-----VDHVYAIREAATLNLKKLVEQFGSE 501
L + + L + D ++E A + +++ G
Sbjct: 544 QQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDN 603
Query: 502 WAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPT------VTANFLLPTVLNMAG 555
+ + R +N + R+T + + ++A + +L + L
Sbjct: 604 LGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQ 663
Query: 556 DNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKYFAQEAISSIADSI 615
+ + L K T + V L L ++D+ V A ++++A
Sbjct: 664 RALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVY 723
Score = 68.6 bits (166), Expect = 4e-12
Identities = 71/505 (14%), Positives = 154/505 (30%), Gaps = 43/505 (8%)
Query: 18 LIDELKNEDVQLRLNSIKKLSTIALALGQE---RTRGELIPFLTETIYDEDEVLLALA-E 73
L L+ L+L ++ L + ++ L I + D + +A
Sbjct: 655 LASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAIS 714
Query: 74 QLGTFTPNVG--GPEYVHCLLPPLESLATVEETVVRDKAVESL-RLISAQHSPHDLEAHF 130
L T + +L L + V +++ A+ ++ A +
Sbjct: 715 FLTTLAKVYPSSLSKISGSILNEL--IGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGY 772
Query: 131 VPLVQRLASGDW-----------FTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDD 179
+ L++ L + + S + P+ V + +N
Sbjct: 773 MDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKN--SRS 830
Query: 180 TPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ 239
T +R A LGE+ +++ ++ + + + V+ A A SI+
Sbjct: 831 TDSIRLLALLSLGEVGHHIDLSGQL-ELKSVILEAFSSPSEEVKSAASYALGSISVGNLP 889
Query: 240 SDVEQLVMPTLRQCSGDTSWRVRYMVADK-FTDLQKAVGPEITKTDLVQAFQMLLKDSEA 298
+ + L++ + + + + K VG + ++ + +E
Sbjct: 890 EYLPFV----LQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEE 945
Query: 299 EVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPIL 358
R A + I +LP +K + + + +S++ + +
Sbjct: 946 GTRNVVAECLGKLTL---------IDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDH 996
Query: 359 GK--HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLA 416
+ + + + FL L+D VR + N + +R + +P L
Sbjct: 997 PQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTF---NSAAHNKPSLIRDLLDTVLPHLY 1053
Query: 417 GQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWL 476
+ V + + + D +R A E M L + L
Sbjct: 1054 NETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGL 1113
Query: 477 VDHVYAIREAATLNLKKLVEQFGSE 501
DH Y I+ L L +L S
Sbjct: 1114 KDH-YDIKMLTFLMLVRLSTLCPSA 1137
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 72.9 bits (178), Expect = 2e-13
Identities = 65/445 (14%), Positives = 146/445 (32%), Gaps = 21/445 (4%)
Query: 183 VRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLA-VEACVSIASLLSQSD 241
++R KL +L + + + ++ + E + R L+ + ++ +
Sbjct: 29 IQRTVQQKLEQLNQYPDFNNYLIFVL----TKLKSEDEPTRSLSGLILKNNVKAHFQNFP 84
Query: 242 VEQL--VMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAE 299
+ GD+S +R V T + + DL+ LL +
Sbjct: 85 NGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQ-NWPDLLPKLCSLLDSEDYN 143
Query: 300 VRAAAANKVRDFCQNLDAYNQENIIMTY---ILPYVKDLVADPNQHVKSALASVIMGLSP 356
A ++ C++ +++ ++P + ++S + +
Sbjct: 144 TCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFII 203
Query: 357 ILGKH--NTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPL 414
+ +D + + DE PEVR N+ L + EV + I+EYM
Sbjct: 204 SRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQ 263
Query: 415 LAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMT 474
E + K + + + +P+L + D L +
Sbjct: 264 RTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVE 323
Query: 475 WLVDHV-----YAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFC 529
+ +R+ + L L + E ++P + + ++ + + +
Sbjct: 324 GGSGGDDTISDWNLRKCSAAALDVLANVYRDELLP-HILPLLKELLFHHEWVVKESGILV 382
Query: 530 INVLAEACGPTVTANF--LLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKP 587
+ +AE C + L+P ++ D A VR TL + + + + +KP
Sbjct: 383 LGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKP 442
Query: 588 ALDKLNGDTDVDVKYFAQEAISSIA 612
+ +L K + A S+ A
Sbjct: 443 LMTELLKRILDSNKRVQEAACSAFA 467
Score = 69.8 bits (170), Expect = 1e-12
Identities = 70/550 (12%), Positives = 148/550 (26%), Gaps = 98/550 (17%)
Query: 85 PEYVHCLLPPLESLATVEETVVRDKAVESLRLISA---QHSPHDLEAHFVPLVQRLASGD 141
P++ + L+ L L + +E + + A + + +
Sbjct: 44 PDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSS 103
Query: 142 WFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVV--- 198
R + L + + +L +L + A G L ++ +
Sbjct: 104 P-LIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI 162
Query: 199 ----EVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQL--VMPTLRQ 252
+D +IP F+ + +R AV +Q+ + + + L
Sbjct: 163 LDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFA 222
Query: 253 CSGDTSWRVRYMVADKFTDLQKAVGPEITK--TDLVQAFQMLLKDSEAEVRAAAANKVRD 310
+GD VR V L + + ++V+ +D + V A
Sbjct: 223 LAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLT 282
Query: 311 FCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPL 370
+ + + L+P+
Sbjct: 283 LAEQPICKDVLV---------------------------------------RHLPKLIPV 303
Query: 371 FLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNA 430
++ +K ++ L I W +R + +LA E L
Sbjct: 304 LVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPL 363
Query: 431 LSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLN 490
L EL +W V+ + I L AI E
Sbjct: 364 LK--ELLFHHEWVVKESGIL-------------------VLG---------AIAEGCMQG 393
Query: 491 LKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANF---LL 547
+ + + +IP ++ D+ L R + ++ A + L+
Sbjct: 394 MIPYLPE---------LIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLM 444
Query: 548 PTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQ--SQVKPALDKLNGDTDVDVKYFAQ 605
+L D+ V+ + T ++ + + L
Sbjct: 445 TELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILY 504
Query: 606 EAISSIADSI 615
+AI ++ADS+
Sbjct: 505 DAIGTLADSV 514
Score = 61.3 bits (148), Expect = 6e-10
Identities = 80/507 (15%), Positives = 161/507 (31%), Gaps = 69/507 (13%)
Query: 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTR--GELIPFLTETIYDEDEVLLALA 72
I L +E+ ++R N + L + ++ ++ + D+DE + A
Sbjct: 217 IENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEA 276
Query: 73 -EQLGTFTPNVGGPEYVHCLLPPLESL--------------------------ATVEETV 105
E T + + LP L + T+ +
Sbjct: 277 CEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWN 336
Query: 106 VRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTS--ACGLFSVCYPRVTAG 163
+R + +L +++ + L L + L +W + G + +
Sbjct: 337 LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP 396
Query: 164 VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVR 223
EL H D +VR L A V T + P+ L + DS +
Sbjct: 397 YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK 456
Query: 224 LLAVEACVSIASLLSQSDVE-----QLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGP 278
+ AC + A+L ++ E ++ TL + ++ D L +VG
Sbjct: 457 RVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGH 516
Query: 279 EITKTDLVQAFQMLLKDSEAEVRAAAANKVRDF----------CQNLDAYNQE------N 322
+ K + +Q L ++ + Y + N
Sbjct: 517 HLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVN 576
Query: 323 IIMTYILPYVKDLVADPNQHVKS---------ALASVIMGLSPILGKHNTVDHLLPLFLS 373
++ + + + L+ + GL + + ++L L
Sbjct: 577 LVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQ 636
Query: 374 QLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALS- 432
++D+ PEVR + + L + + V+ I ++MP+L L EF NA
Sbjct: 637 CMQDKMPEVRQSSFALLGDLTKACF---QHVKPCIADFMPILGTNLNPEFISVCNNATWA 693
Query: 433 IVELAEDSKWRVRLAIIEYMPLLAGQL 459
I E++ + Y+P++ QL
Sbjct: 694 IGEISIQMGI----EMQPYIPMVLHQL 716
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 67.9 bits (165), Expect = 6e-12
Identities = 56/580 (9%), Positives = 156/580 (26%), Gaps = 57/580 (9%)
Query: 16 AVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED---------E 66
+ L + + ++ + + ++ IA EL+ + + E
Sbjct: 98 TNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLL 157
Query: 67 VLLALAEQLGTFTPNVGGPEYVHCLLPPL--ESLATVEETVVRDKAVESL----RLISAQ 120
L + E + + + +L + + +T VR A+ +L I
Sbjct: 158 ALGYMCESADPQSQAL--VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNN 215
Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLF----SVCYPRVTAGVKAELRSHFRNLC 176
+ + +V + + +A G S Y + ++ L +
Sbjct: 216 MEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATM 275
Query: 177 QDDTPMVRRAAAGKLGELA-----KVVEVDYLKTDIIPMFV------------------- 212
+ V + E+ + +
Sbjct: 276 KSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTR 335
Query: 213 -NLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTD 271
N ++ D ++ AC+ + + + + + V+ + Q +WR R F
Sbjct: 336 QNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGS 395
Query: 272 LQKAVGPEITKTDLVQAFQML---LKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYI 328
+ + QA + + D +V+ A + ++ + +
Sbjct: 396 IMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGV 455
Query: 329 LPYVKDLVADPNQHVKSALASVIMGLSPILGKHNT--VDHLLPLFLSQLKDECPEV--RL 384
+ + D + + ++I + + + + L +
Sbjct: 456 VQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFN 515
Query: 385 NIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRV 444
S + ++ V + +LG + N L++ + + +
Sbjct: 516 ARASAFSALTTMVEYATDTVAETSASISTFVMDKLG-QTMSVDENQLTLEDAQSLQELQS 574
Query: 445 R-LAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWA 503
L ++ + + D + I + + L G +
Sbjct: 575 NILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFE 634
Query: 504 Q--STVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTV 541
+ T P ++ + +T + I ++ +
Sbjct: 635 KYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDF 674
Score = 66.8 bits (162), Expect = 1e-11
Identities = 66/484 (13%), Positives = 148/484 (30%), Gaps = 39/484 (8%)
Query: 159 RVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDE 218
R+ A + +N + + A + + +KT+ +
Sbjct: 58 RILAAL------TLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTAL----VSI 107
Query: 219 QDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGD--------TSWRVRYMVADKFT 270
+ + A + +IA + +M + +G S + +
Sbjct: 108 EPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESAD 167
Query: 271 DLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILP 330
+A+ + ++ VR AA N + D + + Y++
Sbjct: 168 PQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQ 227
Query: 331 YVKDLVADPNQHVKSALASV---IMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNII 387
V + + V++A IM K L L ++ +K +V +
Sbjct: 228 VVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTV 287
Query: 388 SNLDCVNEV-IGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNAL--SIVELAEDSKWRV 444
+ E I I + ++ L L E ED W V
Sbjct: 288 EFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNV 347
Query: 445 RLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQ 504
++ + L A G + L + + + REAA + +++
Sbjct: 348 SMSAGACLQLFAQNCGNHILEPVLEFV-EQNITADNWRNREAAVMAFGSIMDGPDKVQRT 406
Query: 505 ---STVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLN---MAGDNV 558
+P ++ + DQ+ + T +CI +A++ ++ LP V+ + +
Sbjct: 407 YYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH 466
Query: 559 ANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNG--------DTDVDVKYFAQEAISS 610
V N + T+ + L ++G D + + + A A+++
Sbjct: 467 PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTT 526
Query: 611 IADS 614
+ +
Sbjct: 527 MVEY 530
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure,
structural genomics; 2.20A {Pyrococcus horikoshii}
Length = 253
Score = 64.7 bits (157), Expect = 9e-12
Identities = 45/262 (17%), Positives = 96/262 (36%), Gaps = 13/262 (4%)
Query: 22 LKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAEQLGTFTP 80
++ E+ +R ++ + L + ++ L E + D+ V+ +
Sbjct: 3 MEEEEFDIR-EALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAK 61
Query: 81 NVGGPEYVHCLLPPLES-LATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLAS 139
+ +L L S L E + + ++ + A+ P +++ L
Sbjct: 62 TR--EDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQM-AKEKPELVKSMIPVLFANYRI 118
Query: 140 GDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE 199
GD T + L + + + A + F ++ + A + + +
Sbjct: 119 GDEKTKINVSYALEEIA--KANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-S 175
Query: 200 VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSW 259
Y+ +P +NL D + VR AVEA V +A+L + ++V+ L + + DTS
Sbjct: 176 FKYVN-PFLPRIINLLHDGDEIVRASAVEALVHLATL--NDKLRKVVIKRLEELN-DTSS 231
Query: 260 RVRYMVADKFTDLQKAVGPEIT 281
V V + + L G +
Sbjct: 232 LVNKTVKEGISRLLLLEGHSSS 253
Score = 58.9 bits (142), Expect = 6e-10
Identities = 31/211 (14%), Positives = 75/211 (35%), Gaps = 12/211 (5%)
Query: 177 QDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASL 236
+++ +R A A L K++ + ++ + L D+ +V A+ + IA
Sbjct: 4 EEEEFDIREALANGE-HLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAK- 61
Query: 237 LSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDS 296
+ E ++ + + +A F + K PE+ K ++ +
Sbjct: 62 TREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE-KPELVK-SMIPVLFANYRIG 119
Query: 297 EAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSP 356
+ + + + + + + M I+ +++ N+ K + I +
Sbjct: 120 DEKTKINVSYALEEIAKANPML------MASIVRDFMSMLSSKNREDKLTALNFIEAMGE 173
Query: 357 ILGKHNTVDHLLPLFLSQLKDECPEVRLNII 387
K V+ LP ++ L D VR + +
Sbjct: 174 NSFK--YVNPFLPRIINLLHDGDEIVRASAV 202
Score = 44.3 bits (104), Expect = 4e-05
Identities = 30/255 (11%), Positives = 86/255 (33%), Gaps = 29/255 (11%)
Query: 256 DTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNL 315
+ + +R +A+ L+K + +++ LL D V A + +
Sbjct: 5 EEEFDIREALANGE-HLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVI---- 59
Query: 316 DAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQL 375
A +E++ + L + +A ++ + V ++P+ +
Sbjct: 60 -AKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL--VKSMIPVLFANY 116
Query: 376 KDECPEVRLNIISNLDCVNEV---------------IGIQQWRVRLAIIEYMPLLAGQLG 420
+ + ++N+ L+ + + + + +L + ++ + G+
Sbjct: 117 RIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAM-GENS 175
Query: 421 VEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHV 480
++ + L + + L D VR + +E L + K+ + L D
Sbjct: 176 FKYVNPFLPRI--INLLHDGDEIVRASAVE---ALVHLATLNDKLRKVVIKRLEELNDTS 230
Query: 481 YAIREAATLNLKKLV 495
+ + + +L+
Sbjct: 231 SLVNKTVKEGISRLL 245
Score = 40.1 bits (93), Expect = 0.001
Identities = 26/142 (18%), Positives = 52/142 (36%), Gaps = 13/142 (9%)
Query: 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE----VLLA 70
I VL + D + ++N L IA ++ + ++ L
Sbjct: 109 IPVLFANYRIGDEKTKINVSYALEEIAK--ANPMLMASIVRDFMSMLSSKNREDKLTALN 166
Query: 71 LAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHF 130
E +G +YV+ LP + +L + +VR AVE+L ++ + L
Sbjct: 167 FIEAMGE-----NSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLND--KLRKVV 219
Query: 131 VPLVQRLASGDWFTSRTSACGL 152
+ ++ L ++T G+
Sbjct: 220 IKRLEELNDTSSLVNKTVKEGI 241
Score = 40.1 bits (93), Expect = 0.001
Identities = 49/321 (15%), Positives = 104/321 (32%), Gaps = 79/321 (24%)
Query: 293 LKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIM 352
+++ E ++R A AN ++L+ +L + +L+ D V S+IM
Sbjct: 3 MEEEEFDIREALANG-----EHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIM 57
Query: 353 GLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYM 412
++ + +L S LK + + I +
Sbjct: 58 VIAKTRED--LYEPMLKKLFSLLKKS---------------------EAIPLTQEIAK-- 92
Query: 413 PLLAGQLGVEFFDEKLNAL-SIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNAL 471
GQ+ E + + + + + ++ +
Sbjct: 93 --AFGQMAKEKPELVKSMIPVLFANYRIGDEKTKINV----------------------- 127
Query: 472 CMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCIN 531
YA+ E A + ++++ ++M +N ++T L I
Sbjct: 128 --------SYALEEIAK----------ANPMLMASIVRDFMSMLSSKNREDKLTALNFIE 169
Query: 532 VLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDK 591
+ E V LP ++N+ D VR + + L + + + ++ V L++
Sbjct: 170 AMGENSFKYVNP--FLPRIINLLHDGDEIVRASAVEALVHLATL--NDKLRKVVIKRLEE 225
Query: 592 LNGDTDVDVKYFAQEAISSIA 612
LN DT V +E IS +
Sbjct: 226 LN-DTSSLVNKTVKEGISRLL 245
Score = 39.3 bits (91), Expect = 0.002
Identities = 27/182 (14%), Positives = 67/182 (36%), Gaps = 7/182 (3%)
Query: 432 SIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNL 491
++EL +D W V I + ++A + ++ L L + +
Sbjct: 36 KLIELLDDDLWTVVKNAISIIMVIAKT-REDLYEPMLKKLFSLLKKSEAIPLTQEIAKAF 94
Query: 492 KKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVL 551
++ ++ ++IP + A R + ++ + + +A+A + + ++ +
Sbjct: 95 GQMAKE--KPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMAS--IVRDFM 150
Query: 552 NMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKYFAQEAISSI 611
+M + ++ +G V + P + L D D V+ A EA+ +
Sbjct: 151 SMLSSKNREDKLTALNFIEAMGENSFKYV--NPFLPRIINLLHDGDEIVRASAVEALVHL 208
Query: 612 AD 613
A
Sbjct: 209 AT 210
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.10A {Escherichia coli} SCOP:
a.118.1.16
Length = 280
Score = 63.7 bits (155), Expect = 3e-11
Identities = 49/285 (17%), Positives = 88/285 (30%), Gaps = 47/285 (16%)
Query: 104 TVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG 163
T + KA + L Q + + L + L + +SA L
Sbjct: 4 TYQKRKASKEYGLY-NQCKKLNDDE----LFRLLDDHNSLKRISSARVLQLRGGQDAVRL 58
Query: 164 VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDS-V 222
C D + R A LG++ + + ++ + N+A +++ + V
Sbjct: 59 AIE--------FCSDKNYIRRDIGAFILGQIKICKKCE---DNVFNILNNMALNDKSACV 107
Query: 223 RLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITK 282
R A+E+ + ++ + + D S VR A A+ I
Sbjct: 108 RATAIESTAQRCKKNPIYSPK--IVEQSQITAFDKSTNVRRATAF-------AIS-VIND 157
Query: 283 TDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQH 342
+ LLKD +VR AA A N + I +++ D N+
Sbjct: 158 KATIPLLINLLKDPNGDVRNWAA----------FAININKYDNSDIRDCFVEMLQDKNEE 207
Query: 343 VKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNII 387
V+ + + L LK V +II
Sbjct: 208 VRIEAIIGLSY----RKDKRVLSVLCDE----LKKN--TVYDDII 242
Score = 57.5 bits (139), Expect = 3e-09
Identities = 38/267 (14%), Positives = 67/267 (25%), Gaps = 35/267 (13%)
Query: 41 ALALGQERTRGEL-IPFLTETIYDEDEVL-LALAEQLGTFTPNVGGPEYVHCLLPPLESL 98
+ G +L L + D + + ++ A L GG + V
Sbjct: 11 SKEYGLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQ----LRGGQDAV----RLAIEF 62
Query: 99 ATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYP 158
+ + + RD L I D + + L T+ C
Sbjct: 63 CSDKNYIRRDIGAFILGQIKICKKCEDNVFNIL-NNMALNDKSACVRATAIESTAQRCKK 121
Query: 159 RVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDE 218
K + D + VRRA A + + + L +NL +D
Sbjct: 122 NPIYSPKIV--EQSQITAFDKSTNVRRATAFAISVINDKATIPLL--------INLLKDP 171
Query: 219 QDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGP 278
VR A A + + + D + VR +
Sbjct: 172 NGDVRNWAAFA------ININKYDNSDIRDCFVEMLQDKNEEVRIEAI-------IGLS- 217
Query: 279 EITKTDLVQAFQMLLKDSEAEVRAAAA 305
++ LK + A
Sbjct: 218 YRKDKRVLSVLCDELKKNTVYDDIIEA 244
Score = 54.8 bits (132), Expect = 2e-08
Identities = 30/231 (12%), Positives = 67/231 (29%), Gaps = 43/231 (18%)
Query: 5 DSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRG-----ELIPFLTE 59
+ + L ++ +R +T + Q + +++
Sbjct: 83 ICKKCEDNVFNILNNMALNDKSACVR-------ATAIESTAQRCKKNPIYSPKIVEQSQI 135
Query: 60 TIYDED-EVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLIS 118
T +D+ V A A + + + L+ L+ VR+ A ++ +
Sbjct: 136 TAFDKSTNVRRATAFAIS----VINDKATIPLLINLLKD----PNGDVRNWAAFAININK 187
Query: 119 AQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQD 178
+ + V+ L + + GL RV + + EL+
Sbjct: 188 YD-NSDIRDC----FVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKK-------- 234
Query: 179 DTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEA 229
V GEL + L T L + + + + A++
Sbjct: 235 --NTVYDDIIEAAGELGDKTLLPVLDT-------MLYKFDDNEIITSAIDK 276
Score = 44.4 bits (105), Expect = 5e-05
Identities = 37/258 (14%), Positives = 64/258 (24%), Gaps = 44/258 (17%)
Query: 368 LPLFLSQLKDECPEVRLNIISNL------DCVNEVIGI---QQWRVRLAIIEYMPLLAGQ 418
L D R++ L D V I + + R + GQ
Sbjct: 25 DDELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFIL----GQ 80
Query: 419 LGV-EFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVE--FFDEKLNALCMTW 475
+ + + ++ + + D VR IE Q + + K+
Sbjct: 81 IKICKKCEDNVFNILNNMALNDKSACVRATAIEST----AQRCKKNPIYSPKIVEQSQIT 136
Query: 476 LVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAE 535
D +R A + + + IP ++ + +D N R F +
Sbjct: 137 AFDKSTNVRRATAFAISVI----NDK----ATIPLLINLLKDPNGDVRNWAAF---AINI 185
Query: 536 ACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGD 595
+ M D VR L +V L
Sbjct: 186 NKYDNSDI---RDCFVEMLQDKNEEVRIEAIIGLSYRKD--------KRVLSVLCDE--L 232
Query: 596 TDVDVKYFAQEAISSIAD 613
V EA + D
Sbjct: 233 KKNTVYDDIIEAAGELGD 250
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat,
micro plus END, +TIP, protein binding; 2.10A {Drosophila
melanogaster}
Length = 242
Score = 58.9 bits (142), Expect = 6e-10
Identities = 24/190 (12%), Positives = 64/190 (33%), Gaps = 13/190 (6%)
Query: 432 SIVELAEDSKWRVRLAIIEYMPLLAG---QLGVEFFDEKLNALCMTWLVDHVYAIREAAT 488
+ E+ KW +R +E + L +L + ++AL D + A
Sbjct: 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAG 78
Query: 489 LNLKKLVEQFGSEWAQ--STVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFL 546
L L + ++ S +P ++ +++ I+ + +
Sbjct: 79 KCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEA----Q 134
Query: 547 LPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQ----SQVKPALDKLNGDTDVDVKY 602
+++ + +V+ A + + + + + +L K + D V+
Sbjct: 135 QESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRD 194
Query: 603 FAQEAISSIA 612
+ EA+ ++
Sbjct: 195 SSAEALGTLI 204
Score = 57.0 bits (137), Expect = 3e-09
Identities = 32/240 (13%), Positives = 73/240 (30%), Gaps = 30/240 (12%)
Query: 236 LLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLL-- 293
LL D+ + + W +R + L P++ + L
Sbjct: 6 LLDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDH-PKLENGEYGALVSALKKV 64
Query: 294 --KDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVI 351
KDS + A A + + L + + + +P + + + +V +AL I
Sbjct: 65 ITKDSNVVLVAMAGKCLALLAKGLA--KRFSNYASACVPSLLEKFKEKKPNVVTALREAI 122
Query: 352 MGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEY 411
+ +++ + L ++ P V+ + + + + +
Sbjct: 123 D----AIYASTSLEAQQESIVESLSNKNPSVKSETALFIARA-----LTRTQPTALNKKL 173
Query: 412 MPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNAL 471
+ LL L V+ + VR + E + L +G + L +
Sbjct: 174 LKLLTTSL--------------VKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219
Score = 54.3 bits (130), Expect = 2e-08
Identities = 24/214 (11%), Positives = 74/214 (34%), Gaps = 13/214 (6%)
Query: 164 VKAELRSHFRNLCQDDTPMVRRAAAGKLGELA----KVVEVDYLKTDIIPMFVN-LAQDE 218
+ +++ F + ++ +R+ + L +L K+ +Y ++ + +D
Sbjct: 12 ILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDS 69
Query: 219 QDSVRLLAVEACVSIASLLSQ--SDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAV 276
+ +A + +A L++ S+ +P+L + + V + A+
Sbjct: 70 NVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVV----TALREAIDAI 125
Query: 277 GPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLV 336
+ ++ L + V++ A + ++ + + +
Sbjct: 126 YASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTL 185
Query: 337 ADPNQHVKSALASVIMGLSPILGKHNTVDHLLPL 370
+P+ V+ + A + L ++G L +
Sbjct: 186 NEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219
Score = 48.9 bits (116), Expect = 2e-06
Identities = 28/194 (14%), Positives = 63/194 (32%), Gaps = 18/194 (9%)
Query: 199 EVDYLKTDIIPMFVNLAQDEQDSVRLLAVE---ACVSIASLLSQSDVEQLVMPTLRQCSG 255
VD L + F + ++++ ++R ++E ++ L + LV + +
Sbjct: 9 PVDILS-KMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITK 67
Query: 256 DTSWRVRYMVADKFTDLQKAVGPEITK--TDLVQAFQMLLKDSEAEVRAAAANKVRDFCQ 313
D++ + M L K + + + V + K+ + V A +
Sbjct: 68 DSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYA 127
Query: 314 NLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKH----NTVDHLLP 369
+ + + + +++ N VKS A I + L
Sbjct: 128 STS--------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTT 179
Query: 370 LFLSQLKDECPEVR 383
+ L + P VR
Sbjct: 180 SLVKTLNEPDPTVR 193
Score = 44.2 bits (104), Expect = 4e-05
Identities = 37/192 (19%), Positives = 66/192 (34%), Gaps = 15/192 (7%)
Query: 18 LIDELKNEDVQLRLNSIKKLSTIALALGQERTR--GELIPFLTETIY-DEDEVLLALAEQ 74
D+L+ + LR S++ L + + G L+ L + I D + VL+A+A +
Sbjct: 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGK 79
Query: 75 LGTFTPNVGGPE---YVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFV 131
Y +P L ++ V E++ I A S
Sbjct: 80 CLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQ----Q 135
Query: 132 PLVQRLASGDWFTSRTSACGLFSVCYPRV--TAGVKAELRS---HFRNLCQDDTPMVRRA 186
+ S + ++ + R TA K L+ + P VR +
Sbjct: 136 ESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDS 195
Query: 187 AAGKLGELAKVV 198
+A LG L K++
Sbjct: 196 SAEALGTLIKLM 207
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding;
HET: 1PE 12P; 2.15A {Synthetic}
Length = 211
Score = 58.1 bits (141), Expect = 9e-10
Identities = 49/216 (22%), Positives = 77/216 (35%), Gaps = 40/216 (18%)
Query: 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAE 73
+ + I L+++ +R + A ALG+ + L + + DED V A A+
Sbjct: 21 VEMYIKNLQDDSYYVRRAA-------AYALGKIGDE-RAVEPLIKALKDEDAWVRRAAAD 72
Query: 74 QLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPL 133
LG +G V PL E+ VR A +L I E PL
Sbjct: 73 ALG----QIGDERAV----EPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPL 117
Query: 134 VQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGE 193
++ L DWF +A L + R + +D+ VR++AA LGE
Sbjct: 118 IKALKDEDWFVRIAAAFALGEIGDERAVEPLIK--------ALKDEDGWVRQSAADALGE 169
Query: 194 LAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEA 229
+ + LA+ R +AV
Sbjct: 170 IG--------GERVRAAMEKLAETGTGFARKVAVNY 197
Score = 55.1 bits (133), Expect = 8e-09
Identities = 40/174 (22%), Positives = 61/174 (35%), Gaps = 32/174 (18%)
Query: 132 PLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKL 191
++ L ++ R +A L + R + L+ D+ VRRAAA L
Sbjct: 23 MYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALK--------DEDAWVRRAAADAL 74
Query: 192 GELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLR 251
G++ + + +DE VR A A I + + L
Sbjct: 75 GQIG--------DERAVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLI 118
Query: 252 QCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAA 305
+ D W VR A A+G EI V+ LKD + VR +AA
Sbjct: 119 KALKDEDWFVRIAAAF-------ALG-EIGDERAVEPLIKALKDEDGWVRQSAA 164
Score = 49.7 bits (119), Expect = 5e-07
Identities = 41/181 (22%), Positives = 65/181 (35%), Gaps = 32/181 (17%)
Query: 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAE 73
+ LI LK+ED +R + L I + L + + DED V + A
Sbjct: 52 VEPLIKALKDEDAWVRRAAADALGQIGDE--------RAVEPLIKALKDEDGWVRQSAAV 103
Query: 74 QLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPL 133
LG +G V PL E+ VR A +L I + + PL
Sbjct: 104 ALG----QIGDERAV----EPLIKALKDEDWFVRIAAAFALGEIGDERAVE-------PL 148
Query: 134 VQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGE 193
++ L D + +++A L + RV A ++ L + T R+ A L
Sbjct: 149 IKALKDEDGWVRQSAADALGEIGGERVRAAMEK--------LAETGTGFARKVAVNYLET 200
Query: 194 L 194
Sbjct: 201 H 201
Score = 44.7 bits (106), Expect = 3e-05
Identities = 40/237 (16%), Positives = 67/237 (28%), Gaps = 68/237 (28%)
Query: 181 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIAS----- 235
P +AAA + + + M++ QD+ VR A A I
Sbjct: 5 PQFEKAAAPLRAD-----------PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVE 53
Query: 236 ----LLSQSDVE--------------QLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVG 277
L D + + L + D VR A A+G
Sbjct: 54 PLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAV-------ALG 106
Query: 278 PEITKTDLVQAFQMLLKDSEAEVRAAAAN---KVRDFCQNLDAYNQENIIMTYILPYVKD 334
+I V+ LKD + VR AAA ++ D + +
Sbjct: 107 -QIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD---------------ERAVEPLIK 150
Query: 335 LVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLD 391
+ D + V+ + L I G + L + R ++ L+
Sbjct: 151 ALKDEDGWVRQS---AADALGEI-GGERVRAAMEKL----AETGTGFARKVAVNYLE 199
Score = 42.7 bits (101), Expect = 1e-04
Identities = 42/244 (17%), Positives = 85/244 (34%), Gaps = 63/244 (25%)
Query: 368 LPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEK 427
+ +++ L+D+ VR L G++G E
Sbjct: 21 VEMYIKNLQDDSYYVRRAAAYAL--------------------------GKIGDE---RA 51
Query: 428 LNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAA 487
+ L ++ +D VR A + + GQ+G E + L + L D +R++A
Sbjct: 52 VEPL--IKALKDEDAWVRRAAADAL----GQIGDE---RAVEPL-IKALKDEDGWVRQSA 101
Query: 488 TLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLL 547
+ L ++ G E A + ++ +D+++ R + L E +
Sbjct: 102 AVALGQI----GDERA----VEPLIKALKDEDWFVR---IAAAFALGEIGDERA-----V 145
Query: 548 PTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKYFAQEA 607
++ D VR + A L +IG +V+ A++KL + A
Sbjct: 146 EPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNY 197
Query: 608 ISSI 611
+ +
Sbjct: 198 LETH 201
Score = 38.1 bits (89), Expect = 0.004
Identities = 46/234 (19%), Positives = 81/234 (34%), Gaps = 48/234 (20%)
Query: 271 DLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILP 330
+KA P + V+ + L+D VR AAA + + A +
Sbjct: 6 QFEKAAAPLRADPEKVEMYIKNLQDDSYYVRRAAAYALGKI-GDERA-----------VE 53
Query: 331 YVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNL 390
+ + D + V+ A A+ +G +G V+ L+ LKDE VR + L
Sbjct: 54 PLIKALKDEDAWVRRA-AADALGQ---IGDERAVEPLIKA----LKDEDGWVRQSAAVAL 105
Query: 391 ------DCVNEVIGI---QQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSK 441
V +I + W VR+A + + + VE +++ +D
Sbjct: 106 GQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVE---------PLIKALKDED 156
Query: 442 WRVRLAIIEYMPLLA-GQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKL 494
VR + + A G++G E + L R+ A L+
Sbjct: 157 GWVRQSAAD-----ALGEIGGERVRAAMEKL----AETGTGFARKVAVNYLETH 201
Score = 36.2 bits (84), Expect = 0.014
Identities = 34/181 (18%), Positives = 61/181 (33%), Gaps = 32/181 (17%)
Query: 433 IVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLK 492
++ +D + VR A + G++G E + L L D +R AA L
Sbjct: 24 YIKNLQDDSYYVRRAAAYAL----GKIGDE---RAVEPLIKA-LKDEDAWVRRAAADALG 75
Query: 493 KLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLN 552
++ G E + ++ +D++ R + L + + ++
Sbjct: 76 QI----GDE----RAVEPLIKALKDEDGWVRQSA---AVALGQIGDERA-----VEPLIK 119
Query: 553 MAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKYFAQEAISSIA 612
D VR A L +IG + L K D D V+ A +A+ I
Sbjct: 120 ALKDEDWFVRIAAAFALGEIGD--------ERAVEPLIKALKDEDGWVRQSAADALGEIG 171
Query: 613 D 613
Sbjct: 172 G 172
Score = 35.8 bits (83), Expect = 0.024
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 17/111 (15%)
Query: 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAE 73
+ LI LK+ED +R+ + A ALG+ + L + + DED V + A+
Sbjct: 114 VEPLIKALKDEDWFVRIAA-------AFALGEIGDE-RAVEPLIKALKDEDGWVRQSAAD 165
Query: 74 QLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH 124
LG +GG + +E LA R AV L + + H
Sbjct: 166 ALG----EIGGER----VRAAMEKLAETGTGFARKVAVNYLETHKSFNHHH 208
Score = 30.0 bits (68), Expect = 1.5
Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 16/106 (15%)
Query: 508 IPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAK 567
+ + +D +Y R + L + + ++ D A VR A
Sbjct: 21 VEMYIKNLQDDSYYVRRAAAYA---LGKIGDERA-----VEPLIKALKDEDAWVRRAAAD 72
Query: 568 TLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKYFAQEAISSIAD 613
L +IG + L K D D V+ A A+ I D
Sbjct: 73 ALGQIGD--------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD 110
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding;
1.80A {Synthetic}
Length = 201
Score = 57.7 bits (140), Expect = 1e-09
Identities = 52/225 (23%), Positives = 81/225 (36%), Gaps = 40/225 (17%)
Query: 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAE 73
+ + I L+++ +R A ALG+ + L + + DED V A A+
Sbjct: 16 VEMYIKNLQDDSYYVRRA-------AAYALGKIGDE-RAVEPLIKALKDEDAWVRRAAAD 67
Query: 74 QLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPL 133
LG +G V PL E+ VR A +L I E PL
Sbjct: 68 ALG----QIGDERAV----EPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPL 112
Query: 134 VQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGE 193
++ L DWF +A L + R + +D+ VR++AA LGE
Sbjct: 113 IKALKDEDWFVRIAAAFALGEIGDERAVEPLIK--------ALKDEDGWVRQSAADALGE 164
Query: 194 LAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLS 238
+ + LA+ R +AV + SL+S
Sbjct: 165 IGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSLIS 201
Score = 56.2 bits (136), Expect = 3e-09
Identities = 48/225 (21%), Positives = 76/225 (33%), Gaps = 43/225 (19%)
Query: 81 NVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASG 140
+ PE V + L+ + VR A +L I E PL++ L
Sbjct: 9 HHTDPEKVEMYIKNLQD----DSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDE 57
Query: 141 DWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV 200
D + R +A L + R + L +D+ VR++AA LG++ V
Sbjct: 58 DAWVRRAAADALGQIGDERAVEPLIKAL--------KDEDGWVRQSAAVALGQIGDERAV 109
Query: 201 DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWR 260
+ L + +DE VR+ A A I + + L + D
Sbjct: 110 EPL--------IKALKDEDWFVRIAAAFALGEIGD--------ERAVEPLIKALKDEDGW 153
Query: 261 VRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAA 305
VR A A+G EI + A + L + R A
Sbjct: 154 VRQSAA-------DALG-EIGGERVRAAMEKLAETGTGFARKVAV 190
Score = 45.4 bits (108), Expect = 1e-05
Identities = 42/246 (17%), Positives = 85/246 (34%), Gaps = 63/246 (25%)
Query: 368 LPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEK 427
+ +++ L+D+ VR L G++G E
Sbjct: 16 VEMYIKNLQDDSYYVRRAAAYAL--------------------------GKIGDE---RA 46
Query: 428 LNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAA 487
+ L ++ +D VR A + + GQ+G E + L + L D +R++A
Sbjct: 47 VEPL--IKALKDEDAWVRRAAADAL----GQIGDE---RAVEPL-IKALKDEDGWVRQSA 96
Query: 488 TLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFLL 547
+ L ++ G E A + ++ +D+++ R + L E +
Sbjct: 97 AVALGQI----GDERA----VEPLIKALKDEDWFVR---IAAAFALGEIGDERA-----V 140
Query: 548 PTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKYFAQEA 607
++ D VR + A L +IG +V+ A++KL + A
Sbjct: 141 EPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNY 192
Query: 608 ISSIAD 613
+ +
Sbjct: 193 LETHKS 198
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 60.6 bits (146), Expect = 1e-09
Identities = 58/446 (13%), Positives = 137/446 (30%), Gaps = 114/446 (25%)
Query: 199 EVDYLKTDIIPMFV-----NL-AQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQ 252
E Y DI+ +F N +D QD + S+LS+ +++ ++M
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPK-----------SILSKEEIDHIIM----- 56
Query: 253 CSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAF-QMLLKDSEAEVRAAAANKVRDF 311
S D + Q+ + VQ F + +L+ + + + + R
Sbjct: 57 -SKDAVSGTLRLF-WTLLSKQEEM---------VQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 312 CQNLDAYNQE-NIIMTYILPYVKDLVADPNQHVKSALASVIMGLSP----IL------GK 360
Y ++ + + + K V+ ++K L ++ L P ++ GK
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK--LRQALLELRPAKNVLIDGVLGSGK 163
Query: 361 HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV--IGIQQWRVRLAIIEYMPLLAGQ 418
T + L + +++ ++ + ++ ++E + L Q
Sbjct: 164 --TW-----VALDVCLSYKVQCKMD--------FKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 419 LGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKL--NALCMTWL 476
+ + ++ +I + +R K N L L
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELR----------------RLLKSKPYENCL----L 248
Query: 477 V-DHVYAIREAATLNL--KKLV---EQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCI 530
V +V + NL K L+ + +++ + + +
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 531 NVL--------AEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQ 582
L E P L++ +++ + + + T +I+
Sbjct: 309 KYLDCRPQDLPREVLT-------TNPRRLSIIAESIRD-GLATWDNWKHVNCDKLTTIIE 360
Query: 583 SQVKPALDKLNGDTDVDVKYFAQEAI 608
S +L+ L + K F + ++
Sbjct: 361 S----SLNVL--EPAEYRKMFDRLSV 380
Score = 53.3 bits (127), Expect = 2e-07
Identities = 61/375 (16%), Positives = 110/375 (29%), Gaps = 114/375 (30%)
Query: 310 DFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLP 369
DF Y ++I+ + +V + D + V+ S++ +DH++
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNF--DC-KDVQDMPKSIL--------SKEEIDHII- 55
Query: 370 LFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEF------ 423
KD + L E+ +Q++ + I Y L + E
Sbjct: 56 ----MSKDAVSGTLRLFWTLLSKQEEM--VQKFVEEVLRINY-KFLMSPIKTEQRQPSMM 108
Query: 424 ---FDEKLNAL--SIVELAEDSKWR------VRLAIIEYMP----LLAGQLGVEFFDEKL 468
+ E+ + L A+ + R +R A++E P L+ G LG K
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS----GK- 163
Query: 469 NALCMTWLVDHVYAIREAATLNLKKLVEQFGSE--W---AQSTVIPKVVAMSRDQNYLHR 523
TW+ K+ + + W V+ M Q L++
Sbjct: 164 -----TWVA--------LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML--QKLLYQ 208
Query: 524 MTCLFCINVLAEACGPTVT----------------ANFLLPTVLNMAGDNVANVR----F 563
+ + + N LL VL NV N + F
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VL----LNVQNAKAWNAF 262
Query: 564 NV-AKTL---------QKIGPILETNVIQSQVKPALDKLNGDT------DVDVKYFAQEA 607
N+ K L + T++ L + D + +E
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 608 -------ISSIADSI 615
+S IA+SI
Sbjct: 323 LTTNPRRLSIIAESI 337
Score = 49.9 bits (118), Expect = 3e-06
Identities = 63/456 (13%), Positives = 130/456 (28%), Gaps = 144/456 (31%)
Query: 17 VL-IDELKNEDVQLRLNSIKKLSTIA-LALGQERTRGELIPFLTETIYDEDEVLLALAEQ 74
+ +D + VQ +++ I L L + ++ L + +Y D + ++
Sbjct: 165 WVALDVCLSYKVQCKMDF-----KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 75 LGTFTPNVG-----------GPEYVHCLLPPLESLATVEE------------TVV--RDK 109
+ Y +CLL L V+ ++ R K
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLL----VLLNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 110 AVESLRLISAQHSPH-DLEAHFVPLVQR-----LASGDWFTSRTS-----ACGLFSVCYP 158
V +SA + H L+ H + L L + R P
Sbjct: 276 QV--TDFLSAATTTHISLDHHSMTLTPDEVKSLLLK--YLDCRPQDLPREVLT----TNP 327
Query: 159 RVTAGVKAELRSH------FRNLCQDDTPMVRRAAAGKLGELAKVVE--VDYLKTDII-P 209
R + + +R ++++ D +L ++E ++ L+
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCD--------------KLTTIIESSLNVLEPAEYRK 373
Query: 210 MFVNLA------------------QDEQDSVRLLAVEACVSIASLLSQSDVE------QL 245
MF L+ + V ++ + SL+ + E +
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK-LHK-YSLVEKQPKESTISIPSI 431
Query: 246 VMPTLRQCSGDTSW--RV--RYMVADKFTDLQKAVGP---------------EITKTDLV 286
+ + + + + Y + F D + P I + +
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTF-DSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490
Query: 287 QAFQMLLKD---SEAEVRAA-----AANKVRDFCQNLDAYNQENIIMTYILPYVKDLVAD 338
F+M+ D E ++R A+ + + Q L Y Y+ D
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP----------YICDNDPK 540
Query: 339 PNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQ 374
+ V A+ + + L D LL + L
Sbjct: 541 YERLVN-AILDFLPKIEENLICSKYTD-LLRIALMA 574
Score = 37.9 bits (87), Expect = 0.012
Identities = 45/328 (13%), Positives = 88/328 (26%), Gaps = 97/328 (29%)
Query: 14 PIAV-LIDELKNEDVQ-----LRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEV 67
P + +I E + + +N K + I +L L P ++
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV------LEPAEYRKMF----- 375
Query: 68 LLALAEQLGTFTPNVGGPEYVHCLLPPLESL-ATVEETVVRDKAVESLRLISAQHSPHDL 126
++L F P+ P + L + V ++ V + +
Sbjct: 376 -----DRLSVFPPSAHIPTIL------LSLIWFDVIKSDVMVVVNKLHK----------- 413
Query: 127 EAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSH---------FRNLCQ 177
L S S + Y + ++ E H +
Sbjct: 414 --------YSLVEKQPKESTISIPSI----YLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 178 DDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSV-RLLAVEACVSIASL 236
DD L Y + I N+ E+ ++ R++
Sbjct: 462 DD--------------LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV----------F 497
Query: 237 LSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDS 296
L +EQ +R T+W + + L+ P I D ++ L+
Sbjct: 498 LDFRFLEQ----KIRH--DSTAWNASGSILNTLQQLKF-YKPYICDND--PKYERLVNAI 548
Query: 297 EAEVRAAAANKVRDFCQNL--DAYNQEN 322
+ N + +L A E+
Sbjct: 549 LDFLPKIEENLICSKYTDLLRIALMAED 576
Score = 32.9 bits (74), Expect = 0.38
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 16/71 (22%)
Query: 8 PDDSLYPIAVLI---DELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDE 64
P + P +L ++ DV + +N + K S L Q + T +I
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS---LVEKQPKES-------TISIPS- 430
Query: 65 DEVLLALAEQL 75
+ L L +L
Sbjct: 431 --IYLELKVKL 439
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear
transport receptor, cell cycle, translation; HET: GNP;
2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A
1f59_A 1o6o_A 1o6p_A
Length = 462
Score = 58.7 bits (141), Expect = 3e-09
Identities = 56/399 (14%), Positives = 132/399 (33%), Gaps = 47/399 (11%)
Query: 204 KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQC--SGDTSWRV 261
+ ++ + E + + IA + ++P L + +++ +
Sbjct: 88 RREVKNYVLQTLGTETYRPSSAS-QCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHM 146
Query: 262 RYMVADKFTDLQKAVGPEITKTDLVQAFQMLLK-----DSEAEVRAAAANKVRDFCQNLD 316
+ + + + + PE + + +++ + V+ AA N + + +
Sbjct: 147 KESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206
Query: 317 AYNQENIIMTYILPYVKDLVADPNQHVKSALASV---IMGLSPILGKHNTVDHLLPLFLS 373
A + +I+ V + P+ V+ A IM L + L + +
Sbjct: 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIE 266
Query: 374 QLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSI 433
+K + EV L GI+ W + + A + + +
Sbjct: 267 AMKSDIDEVALQ------------GIEFWSNVCDEEMDLAIEASEAAEQGRPPEHT---- 310
Query: 434 VELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKK 493
SK+ + A+ +P+L L + ++ D + +AA + L
Sbjct: 311 ------SKFYAKGALQYLVPILTQTLTKQDENDD----------DDDWNPCKAAGVCLML 354
Query: 494 LVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFL---LPTV 550
L + V+P + ++ ++ +R + + E P+ + +PT+
Sbjct: 355 LATCCEDDIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTL 413
Query: 551 LNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPAL 589
+ + D VR A T+ +I +L I L
Sbjct: 414 IELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPL 452
Score = 43.7 bits (102), Expect = 2e-04
Identities = 51/367 (13%), Positives = 106/367 (28%), Gaps = 52/367 (14%)
Query: 18 LIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED------EVLLAL 71
++ L E + ++ + ++ IA A ELIP L + + + E L
Sbjct: 95 VLQTLGTETYRPS-SASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEA 153
Query: 72 AEQLGTFTPNVGGPEYVHCLLPPLESLATVEET--VVRDKAVESLRLISAQHSPHDLEAH 129
+ + + +L + EE V+ A +L + +
Sbjct: 154 IGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKES 213
Query: 130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLC--------QDDTP 181
+ ++ T ++ + + ++ + D
Sbjct: 214 ERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDID 273
Query: 182 MVRRAAAGKLGELAKVVE----------VDYLKTDIIPMFV------------------- 212
V + + F
Sbjct: 274 EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ 333
Query: 213 NLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDL 272
+ D+ D A C+ + + + D+ V+P +++ + WR R F +
Sbjct: 334 DENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCI 393
Query: 273 QKAVGPEITKTDLVQAFQML---LKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYIL 329
+ P K ++QA L +KD VR AA V C+ L + I Y+
Sbjct: 394 LEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLA 450
Query: 330 PYVKDLV 336
P ++ L+
Sbjct: 451 PLLQCLI 457
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.30A {Homo sapiens}
SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A
2qna_A
Length = 876
Score = 57.2 bits (137), Expect = 1e-08
Identities = 61/444 (13%), Positives = 139/444 (31%), Gaps = 58/444 (13%)
Query: 159 RVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDE 218
RV AG+ +N P ++ + + + ++ ++ E
Sbjct: 54 RVAAGL------QIKNSLTSKDPDIKAQYQQRWLAIDANA-----RREVKNYVLHTLGTE 102
Query: 219 QDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQC--SGDTSWRVRYMVADKFTDLQKAV 276
+ + IA + ++P L + +++ ++ + + + +
Sbjct: 103 TYRPSSAS-QCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDI 161
Query: 277 GPEITKTDLVQAFQMLLK-----DSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPY 331
PE + + +++ + V+ AA N + + + A + +I+
Sbjct: 162 DPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQV 221
Query: 332 VKDLVADPNQHVKSALASV---IMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIIS 388
V + P+ V+ A IM L + L + + +K + EV L I
Sbjct: 222 VCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIE 281
Query: 389 NLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAI 448
V + A + P K A ++
Sbjct: 282 FWSNVCDEEMDLAIEASEAAEQGRP--------PEHTSKFYAKGALQ------------- 320
Query: 449 IEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVI 508
+P+L L + ++ D + +AA + L L + V+
Sbjct: 321 -YLVPILTQTLTKQDENDD----------DDDWNPCKAAGVCLMLLATCCEDDIVP-HVL 368
Query: 509 PKVVAMSRDQNYLHRMTCLFCINVLAEACGPTVTANFL---LPTVLNMAGDNVANVRFNV 565
P + ++ ++ +R + + E P+ + +PT++ + D VR
Sbjct: 369 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTA 428
Query: 566 AKTLQKIGPILETNVIQSQVKPAL 589
A T+ +I +L I L
Sbjct: 429 AWTVGRICELLPEAAINDVYLAPL 452
Score = 50.6 bits (120), Expect = 1e-06
Identities = 86/680 (12%), Positives = 198/680 (29%), Gaps = 91/680 (13%)
Query: 18 LIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-------VLLA 70
++ L E + ++ + ++ IA A ELIP L + + + L A
Sbjct: 95 VLHTLGTETYRPS-SASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEA 153
Query: 71 LAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETV--VRDKAVESLRLISAQHSPHDLEA 128
+ P + + +L + EE V+ A +L + +
Sbjct: 154 IGYICQDIDPEQ-LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKE 212
Query: 129 HFVPLVQRLASGDWFTS----RTSACGLF----SVCYPRVTAGVKAELRSHFRNLCQDDT 180
+ ++ R +A S+ Y + + L + + D
Sbjct: 213 SERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDI 272
Query: 181 PMVRRAA----------AGKLGELAKVVEVDYLKTDIIPMFVNLA--------------- 215
V L A + F
Sbjct: 273 DEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTK 332
Query: 216 ----QDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTD 271
D+ D A C+ + + + D+ V+P +++ + WR R F
Sbjct: 333 QDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGC 392
Query: 272 LQKAVGPEITKTDLVQAFQML---LKDSEAEVRAAAANKVRDFCQNL-DAYNQENIIMTY 327
+ + P K ++QA L +KD VR AA V C+ L +A + +
Sbjct: 393 ILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPL 452
Query: 328 ILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTV----------------DHLLPLF 371
+ ++ L V S + L+ + V + ++
Sbjct: 453 LQCLIEGL--SAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKL 510
Query: 372 LSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNAL 431
L S + + E++ A+ + ++ + + + +
Sbjct: 511 LETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIM-ERLQQVLQMESHIQ 569
Query: 432 SIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWL-----VDHVYAIREA 486
S + + ++ + + + ++ + + + + + L ++E
Sbjct: 570 STSDRIQF--NDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQED 627
Query: 487 ATLNLKKLVEQFGSEWAQ--STVIPKVV-AMSRDQNYLHRMTCLFCINVLAEACGPTVTA 543
A + + LVE G E+ + P + + Y + + + L A +
Sbjct: 628 ALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIP 687
Query: 544 NFLLPTVLNMAGDNVAN------VRFNVAKTLQKIGPILETNVIQ--SQVKPALDKLNGD 595
V+ + +N+ N V+ + I + + V L + +
Sbjct: 688 --FCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQA 745
Query: 596 TDVDVKYFAQEAISSIADSI 615
Y + ++ + +S
Sbjct: 746 QVDKSDYDMVDYLNELRESC 765
Score = 40.6 bits (94), Expect = 0.002
Identities = 74/518 (14%), Positives = 154/518 (29%), Gaps = 80/518 (15%)
Query: 102 EETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQR-LASGDWFTSRTSACGLFSV----C 156
++ A L L+ A D+ H +P ++ + + DW R +A F
Sbjct: 340 DDWNPCKAAGVCLMLL-ATCCEDDIVPHVLPFIKEHIKNPDWRY-RDAAVMAFGCILEGP 397
Query: 157 YPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQ 216
P + + L +D + +VR AA +G + +++ + + +
Sbjct: 398 EPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI 457
Query: 217 DEQDSVRLLAVEACVSIASLLSQSDVE-------------------QLVMPTLRQCSGDT 257
+ + +A C + +SL + +L++ L + +
Sbjct: 458 EGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRP 517
Query: 258 SWRVRYMVADKFTDLQKAVGPEITKTD-------------LVQAFQMLLKDSEAEVRAAA 304
+ + + L + V L Q QM R
Sbjct: 518 DGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQF 577
Query: 305 ANKVRDFCQNL----------DAYNQENIIMTYILPYVKDLVADPNQHVKS--ALASVIM 352
+ C L DA +++M +L + + A+++++
Sbjct: 578 NDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVE 637
Query: 353 GLSPILGKHNTVDHLLPLFLSQLKDEC-PEVRLNIISNLDCVNEVIGIQQWRVRLAIIEY 411
L K+ ++ P LK+ +V L + + + + + E
Sbjct: 638 VLGGEFLKY--MEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSN---IIPFCDEV 692
Query: 412 MPLLAGQLGVEFF--DEKLNALS-IVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKL 468
M LL LG E K LS ++A + + + L +
Sbjct: 693 MQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDY 752
Query: 469 NALCMTWLVDHVYAIREAATLNLKKLVEQFGSE-----WAQSTVIPKV---------VAM 514
+ +VD++ +RE+ +V+ + V P+V +A
Sbjct: 753 D------MVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAG 806
Query: 515 SRDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLN 552
D I L A G V +++
Sbjct: 807 DEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIH 844
Score = 30.6 bits (68), Expect = 1.9
Identities = 45/239 (18%), Positives = 84/239 (35%), Gaps = 30/239 (12%)
Query: 17 VLIDELKN-EDVQLRLNSIKKLSTIALALGQERT--RGELIPFLTETIYDE---DEVLLA 70
L LKN + Q+ L ++ + + AL E++ L E + +E V
Sbjct: 653 FLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQ 712
Query: 71 LAEQLGTFTPNVGG--PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEA 128
+ G +GG +Y+ +L L+ + + V+ L + LEA
Sbjct: 713 ILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRES----CLEA 768
Query: 129 HFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPM--VRRA 186
+ +VQ L + + PRV + S ++ D+ V
Sbjct: 769 -YTGIVQGLKGDQ-----ENVHPDVMLVQPRVEF-----ILSFIDHIAGDEDHTDGVVAC 817
Query: 187 AAGKLGELAKV----VEVDYLKTDIIPMFVNLA-QDEQDSVRLLAVEACVSIASLLSQS 240
AAG +G+L V +I + + + + + LA A + L +Q+
Sbjct: 818 AAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRKLKNQA 876
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 55.7 bits (134), Expect = 3e-08
Identities = 74/518 (14%), Positives = 149/518 (28%), Gaps = 45/518 (8%)
Query: 92 LPPLESLATVEETVVRDKAVESLRLISAQHSPHD---LEAHFVP-LVQRLASGDWFTSRT 147
+P L L E+ VV +KA + +S + + V +V+ + + + +
Sbjct: 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 75
Query: 148 SACG---LFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE---VD 201
G S + A K+ + V A L L E +
Sbjct: 76 CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 135
Query: 202 YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQL----VMPTLRQCSGDT 257
+ V L + + +A +S + L + T
Sbjct: 136 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 195
Query: 258 SWRVRYMVADKFTDL--QKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNL 315
++ + + L + P I + +QA + L D + +R NL
Sbjct: 196 YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR----NL 251
Query: 316 DAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLS-------PILGKHNTVDHLL 368
+ M +L + L+ + +V + A ++ L+ ++ + ++ L+
Sbjct: 252 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 311
Query: 369 PLFLSQLKDECPEVRLN---IISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFD 425
L + ++ + +L ++ + Q VRL +P++ L
Sbjct: 312 RTVLR--AGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYG--LPVVVKLLHPPSHW 367
Query: 426 EKLNALS--IVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLV-----D 478
+ A I LA L +P L L D +
Sbjct: 368 PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 427
Query: 479 HVYAIREAATLNLKKLVEQFGSEWA--QSTVIPKVVAMSRDQNYLHRMTCLFCINVLA-- 534
+ I E T L L + IP V + + + LA
Sbjct: 428 RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 487
Query: 535 EACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKI 572
+ + A + + V A L ++
Sbjct: 488 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 525
Score = 31.1 bits (70), Expect = 1.4
Identities = 43/292 (14%), Positives = 83/292 (28%), Gaps = 41/292 (14%)
Query: 203 LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVR 262
L T IP L DE V A + L + +M + S VR
Sbjct: 11 LATRAIPELTKLLNDEDQVVVNKAAVM---VHQLSKKEASRHAIM----RSPQMVSAIVR 63
Query: 263 YMVADKFTDLQK-AVG------------PEITKTDLVQAFQMLLKDSEAEVRAAAANKVR 309
M + + G I K+ + A +L V A +
Sbjct: 64 TMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 123
Query: 310 DFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLS-------PILGKHN 362
+ + + + + L + L+ N + + L+ I+
Sbjct: 124 NLLLH-QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG 182
Query: 363 TVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEY--MPLLAGQLG 420
L+ + + ++ ++ L V + AI+E M L L
Sbjct: 183 GPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCS-------SNKPAIVEAGGMQALGLHLT 234
Query: 421 VEFFDEKLNALS-IVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNAL 471
N L + L++ + + + + + L LG + + A
Sbjct: 235 DPSQRLVQNCLWTLRNLSDAATKQEGMEGL--LGTLVQLLGSDDINVVTCAA 284
Score = 29.9 bits (67), Expect = 2.8
Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 3/118 (2%)
Query: 92 LPPLESLATVEETVVRDKAVESLRLISA-QHSPHDLEAH--FVPLVQRLASGDWFTSRTS 148
+P L ++ A L ++ + + +EA PL + L S + + +
Sbjct: 459 IPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYA 518
Query: 149 ACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTD 206
A LF + + K +L + + A L A+ + Y + D
Sbjct: 519 AAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMAWNETADLGLDIGAQGEPLGYRQDD 576
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.2 bits (135), Expect = 3e-08
Identities = 81/532 (15%), Positives = 140/532 (26%), Gaps = 199/532 (37%)
Query: 113 SLRLISAQHSPHDLEAHF-VPLVQRLASGDWFTSRTSACGL---FSVCYPRVTAGV---- 164
S R ++ H LE VP + +F + L F+ P T G
Sbjct: 5 STRPLTLSH--GSLEHVLLVP------TASFFIASQ----LQEQFNKILPEPTEGFAADD 52
Query: 165 ----KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVV----EVDYLKTDIIPMFVNLAQ 216
AEL F + +V + G+ ++ + E YL+ + I
Sbjct: 53 EPTTPAELVGKFLGYV---SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALA---- 105
Query: 217 DEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAV 276
A LL ++D + L + Y+ A +
Sbjct: 106 -----------------AKLLQENDTTLVKTKELIKN---------YITA------RIMA 133
Query: 277 GPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQ-----NLDAYNQE--NIIMTYIL 329
K +S A RA + N D Y +E ++ TY
Sbjct: 134 KRPFDKK----------SNS-ALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY-H 181
Query: 330 PYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISN 389
V DL+ + + L L + + +V
Sbjct: 182 VLVGDLI------------------------KFSAETLSEL--IRTTLDAEKVF------ 209
Query: 390 LDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAII 449
+ + I +W L D + L I
Sbjct: 210 ----TQGLNILEW----------------------------LENPSNTPDKDY---LLSI 234
Query: 450 EY-MPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQF--GSEWAQST 506
PL+ + L H + +L + +Q
Sbjct: 235 PISCPLIG-----------VIQLA------HYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Query: 507 VIPKVVAMSRD-----QNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANV 561
V +A + + +T LF I V P + L P++L + +N V
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS---LPPSILEDSLENNEGV 334
Query: 562 RFNVAKTLQKIGPILE-TNVIQSQVKPALDKLNGDTDVDVKYFAQEAISSIA 612
P+L +N+ Q QV+ ++K N + I+
Sbjct: 335 P----------SPMLSISNLTQEQVQDYVNKTN-------SHLPAGKQVEIS 369
Score = 40.0 bits (93), Expect = 0.002
Identities = 43/268 (16%), Positives = 78/268 (29%), Gaps = 98/268 (36%)
Query: 167 ELRSHF-----RNLCQDDTPMVRRAAAGKLGELAKVV-EVDYLKTDIIPMF------VNL 214
L HF + + ++ + M+ + K+ E++ T F ++
Sbjct: 1671 NLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSY--TFRSEKGLLSA 1728
Query: 215 AQDEQDSVRLLAVE----------------------------ACVSIASLLSQSDVEQLV 246
Q Q L +E A S+A ++S + ++V
Sbjct: 1729 TQFTQ--PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVV 1786
Query: 247 MPTLR------QCSGDTSWRVRY-MVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAE 299
R D R Y M+ A+ P ++ S+
Sbjct: 1787 --FYRGMTMQVAVPRDELGRSNYGMI---------AINPG----------RVAASFSQEA 1825
Query: 300 VR---AAAANKVRDFCQ--NLDAYNQENIIMTYILPYVKDLVA-DPNQHVKSALASVIMG 353
++ + + N YN EN Y+ A D AL +V
Sbjct: 1826 LQYVVERVGKRTGWLVEIVN---YNVEN--QQYV-------AAGD-----LRALDTVTNV 1868
Query: 354 LSPILGKHNTVDHLLPLFLSQLKDECPE 381
L+ I K +D ++ L S +E
Sbjct: 1869 LNFI--KLQKID-IIELQKSLSLEEVEG 1893
Score = 36.6 bits (84), Expect = 0.029
Identities = 59/388 (15%), Positives = 97/388 (25%), Gaps = 166/388 (42%)
Query: 45 GQERTRG-------ELI-------PFLTETIYDEDEVLLALAEQLGTFTP------NVG- 83
GQ G EL + + I E L L N+
Sbjct: 162 GQ----GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
Query: 84 ---GPEYVHCLLPPLESLATVEETVVRDKAVESLRLIS-AQ--H----------SPHDLE 127
P P + L ++ + S LI Q H +P +L
Sbjct: 218 WLENPSNT----PDKDYLLSI--------PI-SCPLIGVIQLAHYVVTAKLLGFTPGELR 264
Query: 128 AHFVPLVQRL----------ASGDW--FTSRTSAC--GLFSVCYPRVTAGVKAELRSH-- 171
++ + W F LF + G +R +
Sbjct: 265 SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI-------G----VRCYEA 313
Query: 172 FRNLC------QDD--------TPM--VRRAAAGKLGELAKVVEV--DYLKTD--I-I-- 208
+ N +D +PM + ++ V +L + I
Sbjct: 314 YPNTSLPPSILEDSLENNEGVPSPMLSISNL---TQEQVQDYVNKTNSHLPAGKQVEISL 370
Query: 209 ---P-MFV-----------NL------AQDEQD-------------SVRLLAVEA---CV 231
V NL A D S R L V +
Sbjct: 371 VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHS- 429
Query: 232 SIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYM---VADKFT--DLQKAVGPEITKTDLV 286
LL L+ L + S+ + + V D F DL+ G I++ +V
Sbjct: 430 ---HLL--VPASDLINKDLV--KNNVSFNAKDIQIPVYDTFDGSDLRVLSG-SISE-RIV 480
Query: 287 QAFQMLLKDS---EAEVRAAAANKVRDF 311
+++ E + A + DF
Sbjct: 481 ---DCIIRLPVKWETTTQ-FKATHILDF 504
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 54.3 bits (130), Expect = 8e-08
Identities = 57/411 (13%), Positives = 133/411 (32%), Gaps = 48/411 (11%)
Query: 1 MASSDSAPDDSLYPIAV--LIDELKNEDVQLRLNSIKKLSTIALALGQERT-----RGEL 53
A +D + +V ++ + + +++ +L + + + L+ ++ R L
Sbjct: 43 KAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKL-LSREKQPPIDNIIRAGL 101
Query: 54 IPFLTETIYDED------EVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVR 107
IP + D E AL + + T +P SL +
Sbjct: 102 IPKFVSFLGKTDCSPIQFESAWALTN-IASGTSEQTKAVVDGGAIPAFISLLASPHAHIS 160
Query: 108 DKAVESLRLISAQHSPHD----LEAHFV-PLVQRLASGDWFTS-----RTSACGLFSVCY 157
++AV +L I A ++ + PL+ LA D T R L ++C
Sbjct: 161 EQAVWALGNI-AGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 219
Query: 158 ---PRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE---VDYLKTDIIPMF 211
P ++ L + P V + + L +K ++P
Sbjct: 220 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQL 279
Query: 212 VNLAQDEQDSVRLLAVEACVSIAS---LLSQSDVEQLVMPTLRQCSGDTS--------WR 260
V L + + A+ A +I + +Q ++ + + W
Sbjct: 280 VKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT 339
Query: 261 VRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQ 320
+ + A + +Q ++ LV +L ++ + + AA + ++
Sbjct: 340 MSNITAGRQDQIQ-----QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQI 394
Query: 321 ENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLF 371
++ I+ + +L++ + + + I + K + L +
Sbjct: 395 VYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMI 445
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 51.6 bits (123), Expect = 6e-07
Identities = 62/426 (14%), Positives = 125/426 (29%), Gaps = 70/426 (16%)
Query: 92 LPPLESLATVEETVVRDKAVESLRLISAQHSPHD---LEAHFVP-LVQRLASGDWFTSRT 147
+P L L E+ VV +KA + +S + + V +V+ + + + +
Sbjct: 152 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 211
Query: 148 SACG---LFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE---VD 201
G S + A K+ N+ V A L L E +
Sbjct: 212 CTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMA 271
Query: 202 YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIA--------------------SLLSQSD 241
+ V L + + +A +++
Sbjct: 272 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 331
Query: 242 VEQL---VMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEA 298
E+L L+ S +S + P I + +QA + L D
Sbjct: 332 YEKLLWTTSRVLKVLSVCSSNK-----------------PAIVEAGGMQALGLHLTDPSQ 374
Query: 299 EVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLS--- 355
+ +R NL + M +L + L+ + +V + A ++ L+
Sbjct: 375 RLVQNCLWTLR----NLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 430
Query: 356 ----PILGKHNTVDHLLPLFLSQLKDECPEVRLN---IISNLDCVNEVIGIQQWRVRLAI 408
++ + ++ L+ L + ++ + +L ++ + Q VRL
Sbjct: 431 YKNKMMVCQVGGIEALVRTVLR--AGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHY 488
Query: 409 IEYMPLLAGQLGVEFFDEKLNALS--IVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDE 466
+P++ L + A I LA L +P L L D
Sbjct: 489 G--LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDT 546
Query: 467 KLNALC 472
+
Sbjct: 547 QRRTSM 552
Score = 43.1 bits (101), Expect = 3e-04
Identities = 76/534 (14%), Positives = 157/534 (29%), Gaps = 74/534 (13%)
Query: 96 ESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSV 155
A ET+ + S + SA + VQRLA S+ + ++
Sbjct: 93 VRAAMFPETLDEGMQIPSTQFDSAHPT----------NVQRLAEP----SQMLKHAVVNL 138
Query: 156 CYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAK---VVEVDYLKTDIIPMFV 212
+ A + L D+ +V AA + +L+K ++ V
Sbjct: 139 INYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV 198
Query: 213 NLAQDEQDSVRLLAVEACVSIASLLSQSD------VEQLVMPTLRQCSGDTSWRVRYMVA 266
Q+ D + LS + +P L G V +
Sbjct: 199 RTMQNTND---VETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAI 255
Query: 267 DKFTDL---QKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENI 323
+L Q+ + +Q LL + + A + ++ + ++ I
Sbjct: 256 TTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG-NQESKLII 314
Query: 324 IMTYILPYVKDLVADPNQ-HVKSALASVIMGLS------PILGKHNTVDHLLPLFLSQLK 376
+ + + +++ + + V+ LS P + + + L L
Sbjct: 315 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLH----LT 370
Query: 377 DECPEVRLN---IISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSI 433
D + N + NL + + + L LG + + A I
Sbjct: 371 DPSQRLVQNCLWTLRNLSDAAT--------KQEGMEGLLGTLVQLLGSDDINVVTCAAGI 422
Query: 434 V-ELAEDSKWRVRLAIIEY--MPLLAGQL--GVEFFDEKLNALCMTWLVDHVYAIREAAT 488
+ L ++ + ++ + + + L + + D A+C A+R +
Sbjct: 423 LSNLTCNNY-KNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC---------ALRHLTS 472
Query: 489 LNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHR-MTCLFCINVLA---EACGPTVTAN 544
+ + E + +P VV + ++ + I LA P
Sbjct: 473 RH--QDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQG 530
Query: 545 FLLPTV-LNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTD 597
+ V L + R ++ T Q+ + I AL L D
Sbjct: 531 AIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIH 584
Score = 40.8 bits (95), Expect = 0.001
Identities = 61/455 (13%), Positives = 131/455 (28%), Gaps = 62/455 (13%)
Query: 15 IAVLIDELKN-EDVQLRLNSIKKLSTIALALGQERTRGEL--IPFLTETIYDEDEVLLAL 71
++ ++ ++N DV+ + L ++ + IP L + + +L
Sbjct: 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFH 253
Query: 72 A----EQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLE 127
A L + L + +L + L++++ + L
Sbjct: 254 AITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 313
Query: 128 AH----FVPLVQRLASGDWFTSRTSACGL---FSVCYPRVTAGVKAELRSHFRNLCQDDT 180
LV + + + + + SVC A V+A D +
Sbjct: 314 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 373
Query: 181 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 240
+ + L L+ ++ V L + +V I S L+ +
Sbjct: 374 QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVV----TCAAGILSNLTCN 429
Query: 241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEV 300
+ + + MV + LV+ +L ++
Sbjct: 430 NYKN-----------------KMMVCQ-----VGGIEA------LVRT--VLRAGDREDI 459
Query: 301 RAAAANKVRDFCQNLDA--YNQENIIMTYILPYVKDLVADPNQ-HVKSALASVIMGLS-- 355
A +R Q + + Y LP V L+ P+ + A +I L+
Sbjct: 460 TEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 519
Query: 356 ----PILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEY 411
L + + L+ L L + + V G++ + A
Sbjct: 520 PANHAPLREQGAIPRLVQL----LVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGA 575
Query: 412 MPLLAGQLGVEFFDEKLNALS-IVELAEDSKWRVR 445
+ +LA + LN + V+L ++
Sbjct: 576 LHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQ 610
Score = 40.4 bits (94), Expect = 0.002
Identities = 55/364 (15%), Positives = 113/364 (31%), Gaps = 52/364 (14%)
Query: 272 LQKAVGPEITKTDLVQAFQMLLKDSEAEVR--AAAANKVRDFCQNLDAYNQENIIMTYIL 329
++ A+ PE + V+ A + ++ NL Y + + T +
Sbjct: 93 VRAAMFPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAI 152
Query: 330 PYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDH-------LLPLFLSQLK-DECPE 381
P + L+ D +Q V + A ++ LS K H ++ + ++ E
Sbjct: 153 PELTKLLNDEDQVVVNKAAVMVHQLS----KKEASRHAIMRSPQMVSAIVRTMQNTNDVE 208
Query: 382 VRLN---IISNLDCVNEVIGIQQWRVRLAIIEY--MPLLAGQLGVEFFDEKLNAL-SIVE 435
+ NL + LAI + +P L LG +A+ ++
Sbjct: 209 TARCTSGTLHNL-SHHREG-------LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHN 260
Query: 436 LAEDSKWRVRLAIIEY--MPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATLN--L 491
L + ++A+ + + L ++ A N
Sbjct: 261 LLLHQE-GAKMAVRLAGGLQKMVALLNKTNVKFLAITTD---------CLQILAYGNQES 310
Query: 492 KKLVEQFGSEWAQSTVIPKVVAMSRDQNYLH-RMTCLFCINVLA--EACGPTVTANFLLP 548
K ++ G +V + R Y T + VL+ + P + +
Sbjct: 311 KLIILASG-------GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQ 363
Query: 549 TVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKYFAQEAI 608
+ D + N TL+ + + L +L G D++V A +
Sbjct: 364 ALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGIL 423
Query: 609 SSIA 612
S++
Sbjct: 424 SNLT 427
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription;
1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A
1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A
3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A
3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 51.3 bits (123), Expect = 6e-07
Identities = 70/479 (14%), Positives = 141/479 (29%), Gaps = 43/479 (8%)
Query: 92 LPPLESLATVEETVVRDKAVESLRLISAQHSPHD---LEAHFVP-LVQRLASGDWFTSRT 147
+P L L E+ VV +KA + +S + + V +V+ + + + +
Sbjct: 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 78
Query: 148 SACG---LFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE---VD 201
G S + A K+ + V A L L E +
Sbjct: 79 CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 138
Query: 202 YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQL----VMPTLRQCSGDT 257
+ V L + + +A +S + L + T
Sbjct: 139 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 198
Query: 258 SWRVRYMVAD--KFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNL 315
++ + + K + + P I + +QA + L D + +R NL
Sbjct: 199 YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR----NL 254
Query: 316 DAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLS-------PILGKHNTVDHLL 368
+ M +L + L+ + +V + A ++ L+ ++ + ++ L+
Sbjct: 255 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 314
Query: 369 PLFLSQLKDECPEVRLN---IISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFD 425
L + ++ + +L ++ + Q VRL +P++ L
Sbjct: 315 RTVLR--AGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYG--LPVVVKLLHPPSHW 370
Query: 426 EKLNALS--IVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLV-----D 478
+ A I LA L +P L L D +
Sbjct: 371 PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 430
Query: 479 HVYAIREAATLNLKKLVEQFGSEWAQST--VIPKVVAMSRDQNYLHRMTCLFCINVLAE 535
+ I E T L L + IP V + + + LA+
Sbjct: 431 RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 489
Score = 47.1 bits (112), Expect = 1e-05
Identities = 66/511 (12%), Positives = 151/511 (29%), Gaps = 73/511 (14%)
Query: 132 PLVQRLASGDWFTSRTSACGLFSVCY----PRVTAGVKAELRSHFRNLCQDDTPMVRRAA 187
L + L D +A + + + + R + + R
Sbjct: 21 ELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCT 80
Query: 188 AGKLGELAKVVE--VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQL 245
AG L L+ E + K+ IP V + DSV A+ + +LL + ++
Sbjct: 81 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITT---LHNLLLHQEGAKM 137
Query: 246 VM------PTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQA------FQMLL 293
+ + T+ + + D L A G + +K ++ + ++
Sbjct: 138 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL--AYGNQESKLIILASGGPQALVNIMR 195
Query: 294 KDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMG 353
+ ++ + ++ N+ I+ + + + DP+Q + +
Sbjct: 196 TYTYEKLLWTTSRVLKVLSVCSS--NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 253
Query: 354 LSPILGKHNTVDHLLPLFLSQLKDECPEVRLN---IISNLDCVNEVIGIQQWRVRLAIIE 410
LS K ++ LL + L + V I+SNL C N + ++ + +
Sbjct: 254 LSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY-------KNKMMVCQ 306
Query: 411 Y--MPLLAGQLGVEFFDEK-----LNALSIVELAEDSKWRVRLAIIEY--MPLLAGQLGV 461
+ L + E + AL + + A+ + +P++ L
Sbjct: 307 VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHP 366
Query: 462 EFFDEKLNALCMTWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYL 521
+ A + L + + IP++V + +
Sbjct: 367 PSHWPLIKATV--------------GLIRNLALCPANHAPLREQGAIPRLVQLLVRAH-- 410
Query: 522 HRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVI 581
+ F+ + + +A+ + I N I
Sbjct: 411 --------QDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTI 462
Query: 582 QSQVKPALDKLNGDTDVDVKYFAQEAISSIA 612
P +L +++ A + +A
Sbjct: 463 -----PLFVQLLYSPIENIQRVAAGVLCELA 488
Score = 40.9 bits (96), Expect = 0.001
Identities = 48/358 (13%), Positives = 106/358 (29%), Gaps = 74/358 (20%)
Query: 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-------- 66
+ L L + +L N + L ++ A ++ L+ L + + +D
Sbjct: 229 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAG 288
Query: 67 VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDL 126
+L L V + L+ + E+ + + A+ +LR ++++H ++
Sbjct: 289 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED--ITEPAICALRHLTSRHQEAEM 346
Query: 127 EAHFV-------PLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDD 179
+ V +V+ L + + GL LC +
Sbjct: 347 AQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL-----------------ALCPAN 389
Query: 180 TPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASL--L 237
+R IP V L + + +
Sbjct: 390 HAPLREQ-------------------GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 430
Query: 238 SQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSE 297
++ + L + D R+ I + + F LL
Sbjct: 431 RMEEIVEGCTGALHILARDVHNRI-----------------VIRGLNTIPLFVQLLYSPI 473
Query: 298 AEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLS 355
++ AA + + Q+ + E I + +L+ N+ V + A+V+ +S
Sbjct: 474 ENIQRVAAGVLCELAQDKE--AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
Score = 30.1 bits (68), Expect = 2.6
Identities = 42/292 (14%), Positives = 83/292 (28%), Gaps = 41/292 (14%)
Query: 203 LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVR 262
L T IP L DE V A + L + +M + S VR
Sbjct: 14 LATRAIPELTKLLNDEDQVVVNKAAVM---VHQLSKKEASRHAIM----RSPQMVSAIVR 66
Query: 263 YMVADKFTDLQK-AVG------------PEITKTDLVQAFQMLLKDSEAEVRAAAANKVR 309
M + + G I K+ + A +L V A +
Sbjct: 67 TMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 126
Query: 310 DFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLS-------PILGKHN 362
+ + + + + L + L+ N + + L+ I+
Sbjct: 127 NLLLH-QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG 185
Query: 363 TVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEY--MPLLAGQLG 420
L+ + + ++ ++ L + + AI+E M L L
Sbjct: 186 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS--------NKPAIVEAGGMQALGLHLT 237
Query: 421 VEFFDEKLNALS-IVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNAL 471
N L + L++ + + + + + L LG + + A
Sbjct: 238 DPSQRLVQNCLWTLRNLSDAATKQEGMEGL--LGTLVQLLGSDDINVVTCAA 287
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo
sapiens} PDB: 3tj3_A
Length = 450
Score = 50.7 bits (121), Expect = 9e-07
Identities = 51/399 (12%), Positives = 126/399 (31%), Gaps = 41/399 (10%)
Query: 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTR-----GELIPFLTETIYDED---- 65
+ +I+ + ++ + +L++ +K + ++ E + ++
Sbjct: 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTL 81
Query: 66 --EVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP 123
E L + + +P L + E V+++AV +L I A S
Sbjct: 82 QFESAWVLTN-IASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNI-AGDST 139
Query: 124 HD----LEAHFV-PLVQRLASGDWFT-SRTSACGLFSVCY---PRVTAGVKAELRSHFRN 174
L+ + + PL+Q + + T +R + L ++C P + +
Sbjct: 140 MCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSW 199
Query: 175 LCQDDTPMVRRAAAGKLGELAKVVEVDY---LKTDIIPMFVNLAQDEQDSVRLLAVEACV 231
L V A L L+ + + V L V A+ A
Sbjct: 200 LLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVG 259
Query: 232 SIAS---LLSQSDVEQLVMPTLRQCSGDTSWRVR--------YMVADKFTDLQKAVGPEI 280
+I + + +Q + + +L ++ + A +Q +
Sbjct: 260 NIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQ-----TV 314
Query: 281 TKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPN 340
++ A +L+ +E R AA + + A + ++ + + DL+ +
Sbjct: 315 IDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMD 374
Query: 341 QHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDEC 379
+ + + + + + + L +E
Sbjct: 375 SKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEA 413
Score = 31.4 bits (71), Expect = 0.84
Identities = 24/197 (12%), Positives = 62/197 (31%), Gaps = 14/197 (7%)
Query: 207 IIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQL-----VMPTLRQC-SGDTSWR 260
I + + + +L A + + S ++++ V+ + +
Sbjct: 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCT 80
Query: 261 VRYMVADKFTDL---QKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDA 317
+++ A T++ + + V F LL +V+ A + + +
Sbjct: 81 LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGD-ST 139
Query: 318 YNQENIIMTYILPYVKDLVADPNQH-VKSALASVIMGLS---PILGKHNTVDHLLPLFLS 373
++ ++ ILP + L + N+ + + L + V L +
Sbjct: 140 MCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSW 199
Query: 374 QLKDECPEVRLNIISNL 390
L +V + L
Sbjct: 200 LLFVSDTDVLADACWAL 216
Score = 27.9 bits (62), Expect = 9.7
Identities = 36/262 (13%), Positives = 78/262 (29%), Gaps = 36/262 (13%)
Query: 367 LLPLFLSQLKDECPEVRLN---IISNLDCVNEVIGIQQWRVRLAIIEYMPLLAGQLGVEF 423
+ + + + PE +L+ L I + ++ L +
Sbjct: 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVV---ARFVEFLKRKE 77
Query: 424 FDEKLN--ALSIVELAEDSKWRVRLAIIEY--MPLLAGQLGVEFFDEKLNALCMTWLVDH 479
A + +A + + R +I+ +P+ L EF D + A
Sbjct: 78 NCTLQFESAWVLTNIASGNSLQTR-IVIQAGAVPIFIELLSSEFEDVQEQA--------- 127
Query: 480 VYAIREAAT--LNLKKLVEQFGSEWAQSTVIPKVVA-MSRDQNYLHRMTCLFCINVLA-- 534
V+A+ A + V ++P ++ S+ ++ ++ L
Sbjct: 128 VWALGNIAGDSTMCRDYVLDCN-------ILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180
Query: 535 -EACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN---VIQSQVKPALD 590
+ L + + + +V + L + VI + V L
Sbjct: 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLV 240
Query: 591 KLNGDTDVDVKYFAQEAISSIA 612
+L D V A A+ +I
Sbjct: 241 ELLMHNDYKVVSPALRAVGNIV 262
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum,
structural proteomics, heat-like repeat; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Length = 131
Score = 46.9 bits (112), Expect = 1e-06
Identities = 28/138 (20%), Positives = 45/138 (32%), Gaps = 24/138 (17%)
Query: 92 LPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACG 151
L P S E VR +L + + F PL++ L++ DW +A
Sbjct: 14 LVPRGSHMADENKWVRRDVSTALSRMG--------DEAFEPLLESLSNEDWRIRGAAAWI 65
Query: 152 LFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMF 211
+ + R L +DD+ VR AA L ++ +
Sbjct: 66 IGNFQDERAVE--------PLIKLLEDDSGFVRSGAARSLEQIG--------GERVRAAM 109
Query: 212 VNLAQDEQDSVRLLAVEA 229
LA+ R +AV
Sbjct: 110 EKLAETGTGFARKVAVNY 127
Score = 41.1 bits (97), Expect = 1e-04
Identities = 23/149 (15%), Positives = 47/149 (31%), Gaps = 26/149 (17%)
Query: 118 SAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQ 177
S+ H H VP +A + + R + L + +++
Sbjct: 3 SSHHHHHHSSG-LVPRGSHMADENKWVRRDVSTALSRMGDEAFEPLLES---------LS 52
Query: 178 DDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLL 237
++ +R AAA +G V+ L + L +D+ VR A + I
Sbjct: 53 NEDWRIRGAAAWIIGNFQDERAVEPL--------IKLLEDDSGFVRSGAARSLEQIGG-- 102
Query: 238 SQSDVEQLVMPTLRQCSGDTSWRVRYMVA 266
+ V + + + + R +
Sbjct: 103 ------ERVRAAMEKLAETGTGFARKVAV 125
Score = 36.9 bits (86), Expect = 0.004
Identities = 22/102 (21%), Positives = 34/102 (33%), Gaps = 17/102 (16%)
Query: 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAE 73
L++ L NED ++R A +G + + L + + D+ V A
Sbjct: 44 FEPLLESLSNEDWRIR-------GAAAWIIGNFQDE-RAVEPLIKLLEDDSGFVRSGAAR 95
Query: 74 QLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLR 115
L +GG +E LA R AV L
Sbjct: 96 SLE----QIGGERVR----AAMEKLAETGTGFARKVAVNYLE 129
Score = 36.5 bits (85), Expect = 0.005
Identities = 21/96 (21%), Positives = 32/96 (33%), Gaps = 21/96 (21%)
Query: 212 VNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTD 271
+ DE VR A + L + + WR+R A +
Sbjct: 18 GSHMADENKWVRRDVSTALSRMGD---------EAFEPLLESLSNEDWRIRGAAAWIIGN 68
Query: 272 LQ--KAVGPEITKTDLVQAFQMLLKDSEAEVRAAAA 305
Q +AV P L++ L+D VR+ AA
Sbjct: 69 FQDERAVEP------LIKL----LEDDSGFVRSGAA 94
Score = 31.5 bits (72), Expect = 0.27
Identities = 29/149 (19%), Positives = 51/149 (34%), Gaps = 28/149 (18%)
Query: 354 LSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNL-----DCVNEVIGI---QQWRVR 405
+ H+ L+P S + DE VR ++ + L + ++ + WR+R
Sbjct: 1 MGSSHHHHHHSSGLVPR-GSHMADENKWVRRDVSTALSRMGDEAFEPLLESLSNEDWRIR 59
Query: 406 LAIIEYMPLLAGQLGVEFFDEK-LNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFF 464
A + G DE+ + L ++L ED VR + Q+G E
Sbjct: 60 GAAAWII----GNFQ----DERAVEPL--IKLLEDDSGFVRSGAARSL----EQIGGERV 105
Query: 465 DEKLNALCMTWLVDHVYAIREAATLNLKK 493
+ L R+ A L+
Sbjct: 106 RAAMEKL----AETGTGFARKVAVNYLET 130
Score = 31.1 bits (71), Expect = 0.36
Identities = 18/133 (13%), Positives = 46/133 (34%), Gaps = 25/133 (18%)
Query: 476 LVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMSRDQNYLHRMTCLFCINVLAE 535
+ D +R + L ++ G E ++ ++++ R ++
Sbjct: 21 MADENKWVRRDVSTALSRM----GDE-----AFEPLLESLSNEDWRIRG---AAAWIIGN 68
Query: 536 ACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGD 595
+ ++ + D+ VR A++L++IG +V+ A++KL
Sbjct: 69 FQDERA-----VEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAET 115
Query: 596 TDVDVKYFAQEAI 608
+ A +
Sbjct: 116 GTGFARKVAVNYL 128
Score = 31.1 bits (71), Expect = 0.39
Identities = 24/151 (15%), Positives = 46/151 (30%), Gaps = 25/151 (16%)
Query: 43 ALGQERTRGELIPFLTETIYDEDEVL-LALAEQLGTFTPNVGGPEYVHCLLPPLESLATV 101
+ + + DE++ + ++ L G E PL +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMADENKWVRRDVSTALSRM-----GDEAF----EPLLESLSN 53
Query: 102 EETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVT 161
E+ +R A + + + PL++ L F +A L + RV
Sbjct: 54 EDWRIRGAAAWIIGNFQDERA-------VEPLIKLLEDDSGFVRSGAARSLEQIGGERVR 106
Query: 162 AGVKAELRSHFRNLCQDDTPMVRRAAAGKLG 192
A ++ L + T R+ A L
Sbjct: 107 AAMEK--------LAETGTGFARKVAVNYLE 129
Score = 30.7 bits (70), Expect = 0.55
Identities = 23/148 (15%), Positives = 45/148 (30%), Gaps = 37/148 (25%)
Query: 248 PTLRQCSGDTSWRVRYMVADKFTDL-QKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAAN 306
D + VR V+ + + +A P L+++ L + + +R AAA
Sbjct: 15 VPRGSHMADENKWVRRDVSTALSRMGDEAFEP------LLES----LSNEDWRIRGAAAW 64
Query: 307 ---KVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNT 363
+D + + L+ D + V+S L I G
Sbjct: 65 IIGNFQD---------------ERAVEPLIKLLEDDSGFVRSG---AARSLEQI-GGERV 105
Query: 364 VDHLLPLFLSQLKDECPEVRLNIISNLD 391
+ L + R ++ L+
Sbjct: 106 RAAMEKL----AETGTGFARKVAVNYLE 129
Score = 27.3 bits (61), Expect = 7.1
Identities = 10/67 (14%), Positives = 18/67 (26%), Gaps = 8/67 (11%)
Query: 547 LPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDTDVDVKYFAQE 606
+L + +R A + + L KL D V+ A
Sbjct: 44 FEPLLESLSNEDWRIRGAAAWIIGNFQ--------DERAVEPLIKLLEDDSGFVRSGAAR 95
Query: 607 AISSIAD 613
++ I
Sbjct: 96 SLEQIGG 102
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein,
unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Length = 240
Score = 47.3 bits (111), Expect = 5e-06
Identities = 36/204 (17%), Positives = 72/204 (35%), Gaps = 26/204 (12%)
Query: 183 VRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV 242
+ + + A I + Q + VR+ AV S
Sbjct: 48 LIEHGFKEEEQRALTDYKSNDGEYIKKLAFLAYQSDVYQVRMYAVFL------FGYLSKD 101
Query: 243 EQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQML---LKDSEAE 299
+++++ + S D +WRV+ ++A KA K + +A ++ LK S
Sbjct: 102 KEILIFMRDEVSKDNNWRVQEVLA-------KAFDEFCKKIEYKKALPIIDEWLKSSNLH 154
Query: 300 VRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILG 359
R AA +R + + + DL D +++V+ ++ + + +S
Sbjct: 155 TRRAATEGLRIWTNRPYFKENP----NEAIRRIADLKEDVSEYVRKSVGNALRDIS---- 206
Query: 360 KHNTVDHLLPLFLSQLKDECPEVR 383
K L+ + L K E E+
Sbjct: 207 KKFP--DLVKIELKNWKLESKEIN 228
Score = 33.8 bits (76), Expect = 0.11
Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 10/111 (9%)
Query: 281 TKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPN 340
K L+ + KD+ V+ A +FC+ ++ LP + + + N
Sbjct: 101 DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIE--------YKKALPIIDEWLKSSN 152
Query: 341 QHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLK-DECPEVRLNIISNL 390
H + A + + + + ++ LK D VR ++ + L
Sbjct: 153 LHTRRAATEGLRIWTNRPYFKENPNEAIRR-IADLKEDVSEYVRKSVGNAL 202
Score = 32.2 bits (72), Expect = 0.34
Identities = 24/195 (12%), Positives = 54/195 (27%), Gaps = 10/195 (5%)
Query: 40 IALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLA 99
++ GQ+ RG + ++ D + E+ + + + +
Sbjct: 22 ASMTGGQQMGRGSMKQYVARLEKDFSLIEHGFKEEEQRALTDYKSNDGEYIKKLAFLAYQ 81
Query: 100 TVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPR 159
+ + VR AV +S + + + ++ + + + F
Sbjct: 82 S-DVYQVRMYAVFLFGYLS------KDKEILIFMRDEVSKDNNWRVQEVLAKAFD---EF 131
Query: 160 VTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQ 219
+ + RRAA L + I +L +D
Sbjct: 132 CKKIEYKKALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVS 191
Query: 220 DSVRLLAVEACVSIA 234
+ VR A I+
Sbjct: 192 EYVRKSVGNALRDIS 206
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule,
XMAP215, STU2, DIS1, microtubule associated protein,
structural protein; 1.90A {Caenorhabditis elegans}
Length = 266
Score = 45.9 bits (108), Expect = 2e-05
Identities = 21/214 (9%), Positives = 61/214 (28%), Gaps = 22/214 (10%)
Query: 103 ETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA 162
D+ + L+ + + L + +L D+ +A
Sbjct: 28 FQAPTDEHISQLQTLLGNQAKVSLMS-------QLFHKDF-KQHLAALDSLVRLADTSPR 79
Query: 163 GVKAELRSHFRNLC---QDDTPMVRRAAAGKLGELAKVVE------VDYLKTDIIPMFVN 213
+ + + + P + +++ + +P +
Sbjct: 80 SLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLL 139
Query: 214 LAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQ 273
+ +D++R + ++ ++ + +++ L+ + R R
Sbjct: 140 KTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALK----SKNARQRSECLLVIEYYI 195
Query: 274 KAVGPEITKTD-LVQAFQMLLKDSEAEVRAAAAN 306
G K+ + + + D + VR AA N
Sbjct: 196 TNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAIN 229
Score = 44.4 bits (104), Expect = 5e-05
Identities = 24/208 (11%), Positives = 59/208 (28%), Gaps = 26/208 (12%)
Query: 259 WRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAY 318
W + + + LQ +G + + L + + AA + +
Sbjct: 26 WNFQAPTDEHISQLQTLLGNQAKVS-----LMSQLFHKDFKQHLAALDSLVRLADTSPRS 80
Query: 319 NQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNT------VDHLLPLFL 372
N +L + + N + + + ++ T V +P L
Sbjct: 81 LLSNS--DLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLL 138
Query: 373 SQLKDECPEVRLNIISNLDCVNEVIGIQ-------------QWRVRLAIIEYMPLLAGQL 419
+ + +R ++ ++ +++V+G R R + +
Sbjct: 139 LKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNA 198
Query: 420 GVEFFDEKLNALSIVELAEDSKWRVRLA 447
G+ ++ D VR A
Sbjct: 199 GISPLKSLSVEKTVAPFVGDKDVNVRNA 226
Score = 42.5 bits (99), Expect = 2e-04
Identities = 26/184 (14%), Positives = 57/184 (30%), Gaps = 15/184 (8%)
Query: 207 IIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE------QLVMPTLRQCSGDTSWR 260
++ + + + +E C I L+ ++ +P L +G+
Sbjct: 88 LLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDN 147
Query: 261 VRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQ 320
+R V D L VGP + LK A R+ + + +
Sbjct: 148 MRTSVRDIVNVLSDVVGPLK----MTPMLLDALKSKNARQRSECLLVIEYY---ITNAGI 200
Query: 321 ENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGK--HNTVDHLLPLFLSQLKDE 378
+ + V V D + +V++A +V++ G + S +++
Sbjct: 201 SPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGRMADKDKSLVEER 260
Query: 379 CPEV 382
Sbjct: 261 IKRT 264
Score = 31.3 bits (70), Expect = 0.74
Identities = 22/180 (12%), Positives = 62/180 (34%), Gaps = 14/180 (7%)
Query: 372 LSQLKDECPEVRLNIISNLDCVNEVIGIQ----QWRVRLAIIEYMPLLAGQL---GVEFF 424
L L +++SN D + + ++ + ++E ++ +
Sbjct: 67 LDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMS 126
Query: 425 DEKLNAL--SIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYA 482
E+++A ++ ++K +R ++ + + +L+ +G L + L
Sbjct: 127 QEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPML----LDALKSKNAR 182
Query: 483 IREAATLNLKKLVEQFGSEWAQ-STVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGPTV 541
R L ++ + G + +V V D++ R + + + G +
Sbjct: 183 QRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM 242
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 46.0 bits (108), Expect = 3e-05
Identities = 51/340 (15%), Positives = 84/340 (24%), Gaps = 40/340 (11%)
Query: 41 ALALGQERTRGELIPFLTETIYDEDE---------VLLALAEQLGTFTPNVGGPEYVHCL 91
L L + +L I + +L + +G E L
Sbjct: 418 GLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEAL 477
Query: 92 LPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACG 151
L + + + A + L + Q G+ +R A G
Sbjct: 478 KEVLYN----DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNI--TRGLAVG 531
Query: 152 LFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMF 211
L + Y G + + D ++R A + LA + + +
Sbjct: 532 LALINY-----GRQELADDLITKMLASDESLLRYGGAFTIA-LAYAGTGNNSA--VKRLL 583
Query: 212 VNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTD 271
D D VR AV A + V ++ S + VR A
Sbjct: 584 HVAVSDSNDDVRRAAVIALGFVLL-----RDYTTVPRIVQLLSKSHNAHVRCGTAFALGI 638
Query: 272 LQKAVGPEITKTDLVQAFQMLLKDSEAEVR--AAAANKVRDFCQNLDAYNQENIIMTYIL 329
+ L KD VR A A + Q Q I L
Sbjct: 639 A----CAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFL 694
Query: 330 PYVKDLVADPNQHVKSALASVIMGLSPI-LGKHNTVDHLL 368
+ + + A + + G N L
Sbjct: 695 SVITNKHQEGL-----AKFGACVAQGIMNAGGRNVTIQLE 729
Score = 42.5 bits (99), Expect = 4e-04
Identities = 44/261 (16%), Positives = 82/261 (31%), Gaps = 21/261 (8%)
Query: 8 PDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALAL-GQERTRGELIPFLTETIYDEDE 66
D+ + +I E ++ + +++ + L E+ L E +Y++
Sbjct: 427 GRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSA 486
Query: 67 VLLALAEQ-LGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHD 125
A +G G PE +H + + T + R AV L LI+
Sbjct: 487 TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE--TQHGNITRGLAV-GLALINYGR---- 539
Query: 126 LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRR 185
+ L+ ++ + D R ++ Y G + ++ D VRR
Sbjct: 540 -QELADDLITKMLASDESLLRYGGAFTIALAYAGT--GNNSAVKRLLHVAVSDSNDDVRR 596
Query: 186 AAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQL 245
AA LG + T + + L++ VR A + Q
Sbjct: 597 AAVIALGFVLLRDY-----TTVPRIVQLLSKSHNAHVRCGTAFAL----GIACAGKGLQS 647
Query: 246 VMPTLRQCSGDTSWRVRYMVA 266
+ L + D VR
Sbjct: 648 AIDVLDPLTKDPVDFVRQAAM 668
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 44.6 bits (105), Expect = 8e-05
Identities = 36/284 (12%), Positives = 90/284 (31%), Gaps = 21/284 (7%)
Query: 132 PLVQRLASGDWFTSRTSACGLFSVC----YPRVTAGVKAELRSHFRNLCQ-DDTPMVRRA 186
+ Q+L S D ++ + P + ++A + + + M++
Sbjct: 91 QMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLE 150
Query: 187 AAGKLGELAKVVE---VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIA---SLLSQS 240
AA L +A + D +P+F+ L V+ A+ A ++A +
Sbjct: 151 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 210
Query: 241 DVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPE---ITKTDLVQAFQMLLKDSE 297
++ M + + ++L + P+ + + L+ +
Sbjct: 211 VLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMD 270
Query: 298 AEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGL--- 354
E A + + +I I + +L++ + V++ + +
Sbjct: 271 TETLVDACWAISYLSDG-PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 329
Query: 355 SPILGKHNTVDHLLPLFLSQLKDECPEVRLN---IISNLDCVNE 395
+ + + +LP L ++ ISN+ N
Sbjct: 330 NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNT 373
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin,
tetra-tricopeptide repeat, binding protein required for
myosin function; 2.99A {Drosophila melanogaster}
Length = 810
Score = 43.3 bits (101), Expect = 2e-04
Identities = 69/522 (13%), Positives = 150/522 (28%), Gaps = 73/522 (13%)
Query: 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQ 74
+ +L +++ +R+ ++ L + GQ+ D L LAE
Sbjct: 332 VDILKRLYHSKNDGIRVRALVGLCKLGSYGGQD----------AAIRPFGDGAALKLAEA 381
Query: 75 LGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDL----EAHF 130
F G + +R A + L ++ + +A
Sbjct: 382 CRRFLIKPGKDK------------------DIRRWAADGLAYLTLDAECKEKLIEDKASI 423
Query: 131 VPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMVRRAAAGK 190
L+ G+ ++C A K E+ L + +
Sbjct: 424 HALMDLARGGNQSCLYGVVTTFVNLC----NAYEKQEMLPEMIELAKFAKQHIPEEHELD 479
Query: 191 LGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD--VEQLVMP 248
+ I LA+ E + + L ++ L V++ +
Sbjct: 480 DVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVK 539
Query: 249 TLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAF------QMLLKDSEAEVRA 302
L + + + + + + + + PE++ + +L +D A
Sbjct: 540 ALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENF 599
Query: 303 AAANKVRDFCQNLDAYNQEN---IIMTYILPYVKDLVADPNQHVKSALASVIMGLS---P 356
+ + NL + N+ II + ++ + + + ++ A A + L
Sbjct: 600 ESLMALT----NLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED 655
Query: 357 ILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWRVRLAIIEY---MP 413
++ + + +DE E L + + I+ +
Sbjct: 656 VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITS----VSVKCCEKILAIASWLD 711
Query: 414 LLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNALCM 473
+L + + + I+ L +I +A +L E L+ L
Sbjct: 712 ILHTLIANPSPAVQHRGIVII-----------LNMINAGEEIAKKLFETDIMELLSGLGQ 760
Query: 474 TWLVDHVYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMS 515
D RE AT L E + + IP V A +
Sbjct: 761 L-PDDTRAKAREVATQCLAAAERYRIIERSDNAEIPDVFAEN 801
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 40.7 bits (96), Expect = 8e-04
Identities = 33/241 (13%), Positives = 78/241 (32%), Gaps = 36/241 (14%)
Query: 175 LCQDDTPMVRRAAAGKLGELAK-----VVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEA 229
D + +A K ++ + V + +P V L + + A+ A
Sbjct: 20 QLNSDDMQEQLSATRKFSQILSDGNEQIQAV--IDAGALPALVQLLSSPNEQILQEALWA 77
Query: 230 CVSIASLLSQSDVEQLVM-----PTLRQCSGDTSWRVRYMVADKFTDLQKAVGPE----- 279
+IAS ++ Q V+ P L Q + ++ +++ A G
Sbjct: 78 LSNIAS--GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI--ASGGNEQIQA 133
Query: 280 ITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADP 339
+ + A LL ++ A + + + + +I LP + L++ P
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE-QIQAVIDAGALPALVQLLSSP 192
Query: 340 NQHVKSALASVIMGLS-------PILGKHNTVDHLLPLFLSQLKDECPEVR---LNIISN 389
N+ + + ++ + + ++ L L E +++ +
Sbjct: 193 NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL----QSHENEKIQKEAQEALEK 248
Query: 390 L 390
L
Sbjct: 249 L 249
Score = 35.7 bits (83), Expect = 0.031
Identities = 43/244 (17%), Positives = 91/244 (37%), Gaps = 29/244 (11%)
Query: 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGEL-----IPFLTETIYDEDEVLL 69
+ + +L ++D+Q +L++ +K S + + +P L + + +E +L
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFS--QILSDGNEQIQAVIDAGALPALVQLLSSPNEQIL 71
Query: 70 ALAEQLGTFTPN--VGGPEYVHCL-----LPPLESLATVEETVVRDKAVESLRLISAQHS 122
A L + N GG E + + LP L L + + +A+ +L I++
Sbjct: 72 QEA--LWALS-NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GG 127
Query: 123 PHD----LEAHFVP-LVQRLASGDWFTSRTSACGLFSVCY---PRVTAGVKAELRSHFRN 174
++A +P LVQ L+S + + + L ++ ++ A + A
Sbjct: 128 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 187
Query: 175 LCQDDTPMVRRAAAGKLGELAKVVE---VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACV 231
L + + A L +A + + L E + ++ A EA
Sbjct: 188 LLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 247
Query: 232 SIAS 235
+ S
Sbjct: 248 KLQS 251
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat,
microtubule plus END, +TIP, protein binding; 1.70A
{Saccharomyces cerevisiae}
Length = 249
Score = 39.3 bits (91), Expect = 0.002
Identities = 23/197 (11%), Positives = 64/197 (32%), Gaps = 19/197 (9%)
Query: 435 ELAEDSKWRVRLAIIE--YMPLLAG----QLGVEFFDEKLNALCMTWLVDHVYAIREAAT 488
E SKW+ R+ +E + +L+ + + + L D A
Sbjct: 23 ERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAA 82
Query: 489 LNLKKLVEQFGSEWA----QSTVIPKVVAMSRDQNYLHRMTCLFCINVLAEACGP---TV 541
+++ + ++ + S V ++ ++++ + + + P +
Sbjct: 83 QSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSG 142
Query: 542 TANFLLPTVLNMAGDNVANVRFNVAKTLQ------KIGPILETNVIQSQVKPALDKLNGD 595
+L +L +R + K G ++ +V P + ++ D
Sbjct: 143 RNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVND 202
Query: 596 TDVDVKYFAQEAISSIA 612
T ++ E+ + +
Sbjct: 203 TQPAIRTIGFESFAILI 219
Score = 39.3 bits (91), Expect = 0.002
Identities = 34/236 (14%), Positives = 78/236 (33%), Gaps = 28/236 (11%)
Query: 235 SLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKF-----TDLQKAVGPEITKTDLVQAF 289
S+L + + + ++ + W+ R ++F + +K ++L+ +
Sbjct: 6 SMLPEETILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIY 65
Query: 290 -QMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALA 348
++ KD+ + A AA V C L ++ + + D + V A+
Sbjct: 66 GHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIR 125
Query: 349 SV---IMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLD-CVNEVIGIQQWRV 404
I L + +L L +K + P++R+ + + E
Sbjct: 126 KALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQ 185
Query: 405 RLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQLG 460
R E +P ++++ D++ +R E +L G
Sbjct: 186 RYLKDEVVP------------------IVIQIVNDTQPAIRTIGFESFAILIKIFG 223
Score = 33.1 bits (75), Expect = 0.19
Identities = 26/226 (11%), Positives = 62/226 (27%), Gaps = 38/226 (16%)
Query: 6 SAPDDSLYPIAVLI-------DELKNEDVQLRLNSIKKLSTIALALGQERTR-----GEL 53
S L +L + + + + R+ ++++ L+ ++ L
Sbjct: 2 SHMASMLPEETILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNL 61
Query: 54 IPFLTETIYDED---------EVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEET 104
+ I + + + + ++L +YV + PL ++
Sbjct: 62 LGIYGHIIQKDANIQAVALAAQSVELICDKLK---TPGFSKDYVSLVFTPLLDRTKEKKP 118
Query: 105 VVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTS-----RTSACGLFSVCYPR 159
V + ++L I + P +++ + R LF+
Sbjct: 119 SVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEH--MKHKTPQIRMECTQLFNASMKE 176
Query: 160 VTAGVKAELRSHFRNLCQ-------DDTPMVRRAAAGKLGELAKVV 198
G R + D P +R L K+
Sbjct: 177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIF 222
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 38.5 bits (89), Expect = 0.007
Identities = 31/165 (18%), Positives = 72/165 (43%), Gaps = 18/165 (10%)
Query: 193 ELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQ 252
L+ VE Y+ ++P A ++ ++ +A E +SI + ++ + + ++P L
Sbjct: 84 NLSPSVEP-YI-VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-KALLPHLTN 140
Query: 253 CSGDT-SWRVRYMVADKFTDLQKAVGPEITKT--DLVQAFQMLLKDSEAEVRAAAANKVR 309
+T W+ + + F+ + A ++ +L+ + D++ EV+AAA +
Sbjct: 141 AIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMT 200
Query: 310 DFCQNLDAYNQENIIMTYILPYVKDLV---ADPNQHVKSALASVI 351
+ +D N++ I ++ L+ ADP V + +
Sbjct: 201 KATETVD--NKD------IERFIPSLIQCIADP-TEVPETVHLLG 236
Score = 35.8 bits (82), Expect = 0.044
Identities = 26/169 (15%), Positives = 57/169 (33%), Gaps = 7/169 (4%)
Query: 432 SIVELAEDSKWRVR--LAIIEYMPLLAGQLGVEFFDEKLNALCMTWLVDHVYAIREAATL 489
+ + +D K A+ VE + +L T + I+ A+
Sbjct: 58 ELAKGIKDKKTAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASE 117
Query: 490 NLKKLVEQFGSEWAQSTVIPKVV-AMSRDQNYLHRMTCLFCINVLAEACGPTVTANF--L 546
L +V + A ++P + A+ + ++ L + + +A V L
Sbjct: 118 TLISIVNAV-NPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPEL 176
Query: 547 LPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGD 595
+P + D V+ + K ++ I+ + P+L + D
Sbjct: 177 IPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFI-PSLIQCIAD 224
Score = 33.1 bits (75), Expect = 0.31
Identities = 38/260 (14%), Positives = 76/260 (29%), Gaps = 45/260 (17%)
Query: 3 SSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRG-ELIPFLTETI 61
S S+ + L +L R ++++ E L + I
Sbjct: 4 HHHSDSQQSIKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGI 63
Query: 62 YDEDEVLLALAEQLGTFTPNVGGPE---YVHCLLPPLESLATVEETVVRDKAVESLRLIS 118
D+ A+ + P Y+ L+P + + A ++ ++ A E+L I
Sbjct: 64 KDKKTAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIV 123
Query: 119 AQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQD 178
+P +KA L + +
Sbjct: 124 NAVNPV--------------------------------------AIKALLPHLTNAIVET 145
Query: 179 DTPMVRRAAAGKLGELAKVV--EVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASL 236
+ + A + +V ++IP+ D + V+ A A
Sbjct: 146 NKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATET 205
Query: 237 LSQSDVEQLVMPTLRQCSGD 256
+ D+E+ + P+L QC D
Sbjct: 206 VDNKDIERFI-PSLIQCIAD 224
Score = 30.0 bits (67), Expect = 2.9
Identities = 19/138 (13%), Positives = 45/138 (32%), Gaps = 5/138 (3%)
Query: 481 YAIREAATLNLKKLVEQFGSE-WAQSTVIPKVVAMSRD-QNYLHRMTCLFCINVLAEACG 538
R + + E ++ +D + + M + I +
Sbjct: 28 ADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTAANAMQAVAHIANQSNL-S 86
Query: 539 PTVTANF--LLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLNGDT 596
P+V L+P + AG+ ++ ++TL I + I++ + + +
Sbjct: 87 PSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETN 146
Query: 597 DVDVKYFAQEAISSIADS 614
K A S++ D+
Sbjct: 147 KWQEKIAILAAFSAMVDA 164
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone;
2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Length = 296
Score = 36.5 bits (84), Expect = 0.019
Identities = 27/184 (14%), Positives = 56/184 (30%), Gaps = 22/184 (11%)
Query: 285 LVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPY-VKDLVADPNQHV 343
+ L+ A +R AA + QN A QE ++ L ++ L D V
Sbjct: 83 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQN-VAAIQEQVLGLGALRKLLRLLDRDACDTV 141
Query: 344 KS----ALASVIMGLSPI---LGKHNTVDHLLPLFLSQLKDECPEVR---LNIISNLDCV 393
+ A++ ++ + + L+ ++ + +++ ++ NL V
Sbjct: 142 RVKALFAISCLVREQEAGLLQFLRLDGFSVLMRA----MQQQVQKLKVKSAFLLQNL-LV 196
Query: 394 NEVIGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIV-ELAEDSKWRVRLAIIEYM 452
+ L + E + L + L D VR +
Sbjct: 197 GHPEHKGTLCSMGMV----QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPEL 252
Query: 453 PLLA 456
L
Sbjct: 253 GLEE 256
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc
complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Length = 800
Score = 35.2 bits (80), Expect = 0.074
Identities = 46/437 (10%), Positives = 128/437 (29%), Gaps = 74/437 (16%)
Query: 183 VRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAV--------------- 227
R A + ++ + D + ++ +
Sbjct: 190 KRHGAFLAFAAMFSEIDNGGDI--------QIRVDSKLFSKIYEILVTDKFNDFVDDRTV 241
Query: 228 ----EACV-SIASLLSQSDVEQLVMPTLRQCSGDTSWRVRY--MVADKFTDLQKAVGPEI 280
+A ++ + ++ L W+V++ ++A L
Sbjct: 242 APVRDAAAYLLSRIYPLIGPND-IIEQLVGFLDSGDWQVQFSGLIA-----LGYLKEFVE 295
Query: 281 TKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPN 340
K L + LL + +++ +A + + + ++++ ++
Sbjct: 296 DKDGLCRKLVSLLSSPDEDIKLLSAELLC----HFPITDSLDLVLEKCWKNIES------ 345
Query: 341 QHVKSALASVIMGLSPILGKHNTV----DHLLPLFLSQLKDECPEVRLNIISNLDCVNEV 396
+ + S + + L + + N L PEVR +I++ + ++E
Sbjct: 346 EELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLSEE 405
Query: 397 IGIQQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLA 456
L+A + +E DE ++L + + + I+ +M ++
Sbjct: 406 -------------SIDFLVAEVVLIEEKDEIREM--AIKLLKKRRDLPKNLILHFMNVIG 450
Query: 457 GQLGVEFFDEKLNALCMTWLVDH-VYAIREAATLNLKKLVEQFGSEWAQSTVIPKVVAMS 515
G L + ++ + + + + + L + L+ + + + + +
Sbjct: 451 GSLYEPYSEDDFVSYEDLYFTKSGINVVGKDEILKNRCLLFECIMKSGLPDLQSTIETTT 510
Query: 516 RDQNYLHRMTCLFCINVLAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI 575
+ ++ + + P AN L D +++ K +K
Sbjct: 511 -SRTFISLYRSVQALVKDT----PYTPANIEE---LEYYFDRCKDLKMAPLKEFKKKLSA 562
Query: 576 LETNVIQSQVKPALDKL 592
I V P
Sbjct: 563 PGIRSIHPMVDPLYSDY 579
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase,
nucleus, phosphoprotein, PR proteasome, threonine
protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Length = 997
Score = 35.1 bits (80), Expect = 0.074
Identities = 27/180 (15%), Positives = 60/180 (33%), Gaps = 14/180 (7%)
Query: 200 VDYLKTDIIPMFVNLAQDEQDS--VRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDT 257
V YL ++P + L + + L V + + + + ++ + +
Sbjct: 754 VPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVAL 813
Query: 258 SW---RVRYMVADKFTDLQKAVGPEITKTDLVQA-FQMLLKDSEAEVRAAAANKVRDFCQ 313
S +++ F + E K +++ L + EVR AA+ + D
Sbjct: 814 SSNQTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVH 873
Query: 314 NLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLS 373
N +E +++ I + K L + + S + H V L + +
Sbjct: 874 NWK---EEQPLLSLIERFAKGLDVNKYTSKERQKLS-----KTDIKIHGNVLGLGAIISA 925
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Homo
sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B
1w63_B
Length = 591
Score = 34.3 bits (79), Expect = 0.11
Identities = 31/154 (20%), Positives = 61/154 (39%), Gaps = 13/154 (8%)
Query: 238 SQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSE 297
SQ D+ + + + + D + +R + A + + +IT L + + LKD +
Sbjct: 79 SQPDMAIMAVNSFVKDCEDPNPLIRAL-AVRT--MGCIRVDKIT-EYLCEPLRKCLKDED 134
Query: 298 AEVRAAAANKVRDFC-QNLDAYNQENIIMTYILPYVKDLVADPNQHVKSALASVIMGLS- 355
VR AA C L N + + L ++DL+AD N V + + + +S
Sbjct: 135 PYVRKTAA-----VCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISE 189
Query: 356 --PILGKHNTVDHLLPLFLSQLKDECPEVRLNII 387
P + + L+ L + ++ I+
Sbjct: 190 SHPNSNLLDLNPQNINKLLTALNECTEWGQIFIL 223
Score = 29.3 bits (66), Expect = 4.9
Identities = 17/80 (21%), Positives = 30/80 (37%)
Query: 173 RNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVS 232
R +D+ P VR+ AA + +L + + +L D V AV A
Sbjct: 127 RKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSE 186
Query: 233 IASLLSQSDVEQLVMPTLRQ 252
I+ S++ L + +
Sbjct: 187 ISESHPNSNLLDLNPQNINK 206
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine
acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Length = 507
Score = 34.5 bits (78), Expect = 0.12
Identities = 39/273 (14%), Positives = 85/273 (31%), Gaps = 44/273 (16%)
Query: 172 FRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVR-----LLA 226
+LC+D+ +RR A +L + A + + + + E + V +
Sbjct: 70 QLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLLQTDDSAEFNLVNNALLSIFK 129
Query: 227 VEACVSIASLLSQ-----------------------------SDVEQLVMPTLRQCSGDT 257
++A ++ L SQ +VE+L++ ++ D
Sbjct: 130 MDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDV 189
Query: 258 SWRVRYMVAD---------KFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKV 308
+ + + Q+ V + DL Q F D + V
Sbjct: 190 TGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAV 249
Query: 309 RDFCQNLDAYNQENIIMTYILPYVKDLV-ADPNQHVKSALASVIMGLSPILGKHNTVDHL 367
F +N+ + +LP + L ++ + ++ +S G ++
Sbjct: 250 PLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETN 309
Query: 368 LPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ 400
L +L + P + + NE +Q
Sbjct: 310 LRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQ 342
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell
cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A
3au3_A 3qhe_A
Length = 354
Score = 34.1 bits (78), Expect = 0.14
Identities = 31/288 (10%), Positives = 81/288 (28%), Gaps = 44/288 (15%)
Query: 179 DTPMVRRAAAGKLGELAKVVEVDYLKTDI-----IPMFVNLAQDEQDSVRLLAVEACVSI 233
A L +L+ E + + + L Q + + L +++
Sbjct: 44 PVEHQICPAVCVLMKLSFDEEH---RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITL 100
Query: 234 ASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLL 293
M GD + + + ++A L
Sbjct: 101 --------RRYAGMALTNLTFGDVANKATL----------------CSMKGCMRALVAQL 136
Query: 294 KDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPY-VKDLVADPNQHVKSALASVIM 352
K +++ A+ +R+ D +++ + + ++ + + ++ S +
Sbjct: 137 KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALW 196
Query: 353 GLS--------PILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV-NEVIGIQQWR 403
LS I + L+ + + + + L V + + + R
Sbjct: 197 NLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 256
Query: 404 VRLAIIEYMPLLAGQLGVEFFDEKLNALSIV-ELAEDSKWRVRLAIIE 450
L + L L NA + L+ + + + A+ +
Sbjct: 257 QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNP-KDQEALWD 303
Score = 32.1 bits (73), Expect = 0.54
Identities = 21/131 (16%), Positives = 45/131 (34%), Gaps = 10/131 (7%)
Query: 88 VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHD------LEAHFVP-LVQRLASG 140
+ L+ L + + + LR +S+ + ++ E + + L+Q L S
Sbjct: 216 LAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH 275
Query: 141 DWFTSRTSACGLFSVCY--PRVTAGV-KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKV 197
+ L+++ P+ + S +NL M+ +A L L
Sbjct: 276 SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335
Query: 198 VEVDYLKTDII 208
Y +I+
Sbjct: 336 RPAKYKDANIM 346
Score = 30.6 bits (69), Expect = 1.5
Identities = 36/306 (11%), Positives = 89/306 (29%), Gaps = 48/306 (15%)
Query: 92 LPPLESLATVEETVVRDKAVESLRLIS--AQHSPHDLEAHFVP-LVQRLASGDWFTSRTS 148
+ ++ AV L +S +H E + + + L T+
Sbjct: 34 MDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTN 93
Query: 149 ACGLFSVCYPRVTA---------GVKAELRSH------FRNLCQDDTPMVRRAAAGKLGE 193
++ A KA L S + ++ +++ A L
Sbjct: 94 DHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRN 153
Query: 194 LAKVVEVDY----LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD-------- 241
L+ +V+ + + + A + + L + ++ +L +
Sbjct: 154 LSWRADVNSKKTLREVGSVKALMECALEVKKESTLKS--VLSALWNLSAHCTENKADICA 211
Query: 242 ----VEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPE-----ITKTDLVQAFQML 292
+ LV + +T + E + + + +Q
Sbjct: 212 VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH 271
Query: 293 LKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTY---ILPYVKDLVADPNQHVKSALAS 349
LK + + A + NL A N ++ + + +K+L+ ++ + A+
Sbjct: 272 LKSHSLTIVSNACGTLW----NLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAA 327
Query: 350 VIMGLS 355
+ L
Sbjct: 328 ALRNLM 333
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif,
de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A
4dba_A
Length = 210
Score = 33.0 bits (76), Expect = 0.20
Identities = 36/204 (17%), Positives = 72/204 (35%), Gaps = 30/204 (14%)
Query: 54 IPFLTETIYDED-EVLLALAEQLGTFTPNVGGPEYVHCL-----LPPLESLATVEETVVR 107
+P + + + D + L + +L GG E + + LP L L + +
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIA--SGGNEQIQAVIDAGALPALVQLLSSPNEQIL 71
Query: 108 DKAVESLRLISAQHSPHD----LEAHFVP-LVQRLASGDWFTSRTSACGLFSVCY---PR 159
+A+ +L I++ ++A +P LVQ L+S + + + L ++ +
Sbjct: 72 QEALWALSNIAS-GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 130
Query: 160 VTAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAK--------VVEVDYLKTDIIPMF 211
+ A + A L + + A L +A V E +
Sbjct: 131 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAG-----ALEKL 185
Query: 212 VNLAQDEQDSVRLLAVEACVSIAS 235
L E + ++ A EA + S
Sbjct: 186 EQLQSHENEKIQKEAQEALEKLQS 209
Score = 29.9 bits (68), Expect = 1.9
Identities = 29/199 (14%), Positives = 65/199 (32%), Gaps = 28/199 (14%)
Query: 175 LCQDDTPMVRRAAAGKLGELAK-----VVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEA 229
++A KL ++A + V + +P V L + + A+ A
Sbjct: 20 QLNSPDQQELQSALRKLSQIASGGNEQIQAV--IDAGALPALVQLLSSPNEQILQEALWA 77
Query: 230 CVSIASLLSQSDVEQLVM-----PTLRQC--SGDTS------WRVRYMVADKFTDLQKAV 276
+IAS ++ Q V+ P L Q S + W + + + + Q
Sbjct: 78 LSNIAS--GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQIQ- 132
Query: 277 GPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKDLV 336
+ + A LL ++ A + + + ++ + L ++ L
Sbjct: 133 --AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE-QKQAVKEAGALEKLEQLQ 189
Query: 337 ADPNQHVKSALASVIMGLS 355
+ N+ ++ + L
Sbjct: 190 SHENEKIQKEAQEALEKLQ 208
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing,
nuclear transport, mRNA splicing, mRNA transport; 3.35A
{Drosophila melanogaster}
Length = 971
Score = 33.1 bits (74), Expect = 0.38
Identities = 40/354 (11%), Positives = 105/354 (29%), Gaps = 26/354 (7%)
Query: 177 QDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACV----S 232
+ R+ + V+ L+ + +A ++ +EAC+ S
Sbjct: 431 LECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQS 490
Query: 233 IASLLSQSD---VEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAF 289
+A + + +L+ + ++ + + + A
Sbjct: 491 VAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWL--MENPAYIPPAI 548
Query: 290 QMLLKDSEAEVRAAAANKVRDFCQ----NLDAYNQENIIMTYILPYVKDLVADPNQHVKS 345
+L++ + + A A +++ C+ L Y + ++ + + +
Sbjct: 549 NLLVRGLNSSMSAQATLGLKELCRDCQLQLKPYA-DPLLNACHASLNTGRMKNSDSVRLM 607
Query: 346 ALASVIMGLSPILGKHNTVDHLLPLFLSQLK------DECPEVRLNIISNLDCVNEVIGI 399
+M L +D ++ +L+ + P R+ I L+ ++ +
Sbjct: 608 FSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSS 667
Query: 400 QQWRVRLAIIEYMPLLAGQLGVEFFDEKLNALSIVELAEDSKWRVRLAIIEYMPLLAGQL 459
V + + Q + + + + V A M L
Sbjct: 668 LNTDVDEQATDQPIV---QPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNL 724
Query: 460 GVEFFDEKLNALCMTWLVDHVYAIREAATLNL-KKLVEQFGSEWAQSTVIPKVV 512
F L LC+ + A TL + K + F + ++ +++
Sbjct: 725 R-SSFQPMLQDLCLFIVASFQ-TRCCAPTLEISKTAIVMFFKDEGCKPLMQQLL 776
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats,
hypothetical, unknown function; 2.20A {Thermococcus
onnurineus}
Length = 265
Score = 31.7 bits (71), Expect = 0.52
Identities = 31/190 (16%), Positives = 60/190 (31%), Gaps = 16/190 (8%)
Query: 161 TAGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLK---TDIIPMFVNLAQD 217
A L +D R A LGE+ K + D + +F+N
Sbjct: 27 LALEDKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQ 86
Query: 218 EQDSVRLLAVEACVSIASLLSQSDVEQL-VMPTLRQ--CSGDTSWRVRYMVADKFTDLQK 274
E + V + A+ A + + L TL S D R+ + D+
Sbjct: 87 ENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETI------DVLS 140
Query: 275 AVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQNLDAYNQENIIMTYILPYVKD 334
+ P + L+ + + A + + ++ +T IL +
Sbjct: 141 KLQPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNML----NSSADSGHLTLILDEIPS 196
Query: 335 LVADPNQHVK 344
L+ + N+ +
Sbjct: 197 LLQNDNEFIV 206
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion,
complex, cell-CELL adhesion, ARVCF, delta-catenin DP120,
JAC-1, cell membrane, membrane; 2.40A {Homo sapiens}
PDB: 3l6y_A
Length = 584
Score = 30.7 bits (68), Expect = 1.8
Identities = 53/425 (12%), Positives = 116/425 (27%), Gaps = 45/425 (10%)
Query: 132 PLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRS-----HFRNLCQDDTPMVRRA 186
++ L +A L +CY VK ++R L V
Sbjct: 52 EVIAMLGFRLDAVKSNAAAYLQHLCYRN--DKVKTDVRKLKGIPVLVGLLDHPKKEVHLG 109
Query: 187 AAGKLGELAKVVEVD----YLKTDIIPMFVNLAQDEQD-SVRLLAVEACVSIAS------ 235
A G L ++ + D D +P V L + +D + + +++S
Sbjct: 110 ACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKM 169
Query: 236 LLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTD---LQKAVGPEITKTDLVQAFQML 292
+ + L + SG L G + +
Sbjct: 170 EIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRK 229
Query: 293 LKDSEAEVRA---------AAANKVRDFCQNLDAYNQENIIMTYILPYVKDLVADPNQHV 343
L++ + V A + +N + + + + +V
Sbjct: 230 LRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNV 289
Query: 344 KSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQWR 403
+ + +L + V + L E I NL C + R
Sbjct: 290 ANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNL-CAGRWTYGRYIR 348
Query: 404 VRLAIIEYMPLLAGQLGVEFFDEKLNALS-IVELAEDSKWRVRLAIIEYMPLLAGQLGVE 462
L + + +A L E A + LA D++ + + L+
Sbjct: 349 SALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLV------- 401
Query: 463 FFDEKLNALCMTWLVDHVYAIREAATLNLKKLV---EQFGSEWAQSTVIPKVVAMSRDQN 519
+ L + + + +++ + + ++ I K+V +++ N
Sbjct: 402 ---KNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGN 458
Query: 520 YLHRM 524
+
Sbjct: 459 RSEKE 463
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 618
Score = 30.3 bits (68), Expect = 2.3
Identities = 57/360 (15%), Positives = 118/360 (32%), Gaps = 60/360 (16%)
Query: 63 DEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESL-RLISAQH 121
+ LAL +G E L +E L + +R KA +I +
Sbjct: 120 TQFVQGLAL-----CTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVI--RK 172
Query: 122 SPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTP 181
P +L F+P + L + ++ L + R ++ +HFR L
Sbjct: 173 VP-ELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCER-----SPDMLAHFRKLVPQLVR 226
Query: 182 MVRRAAAGKLGELAKVVEVD--YLKTDIIPMFVNLAQDEQDSVRLLA------------- 226
+++ V + +L+ I+ + L +++ DS +
Sbjct: 227 ILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETS 286
Query: 227 --------VEACVSIASLLSQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGP 278
E ++I + S+S + L + L + + +RY+ +
Sbjct: 287 KNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQ---- 342
Query: 279 EITKTDLVQAFQML----LKDSEAEVRAAAANKVRDFCQNLDAYNQENI--IMTYILPYV 332
T + VQ + LKD + ++ A N NI +M +L ++
Sbjct: 343 --TDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALV------NGNNIRGMMKELLYFL 394
Query: 333 KDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFL---SQLKDECPEVRLNIISN 389
+P A + K +D ++ + S ++D+ + +I+N
Sbjct: 395 DS--CEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITN 452
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton,
microtubule, tubul domain, hydrolase; HET: GTP; 2.88A
{Saccharomyces cerevisiae}
Length = 278
Score = 29.7 bits (66), Expect = 2.9
Identities = 35/208 (16%), Positives = 67/208 (32%), Gaps = 24/208 (11%)
Query: 425 DEKLNALSIVELAEDSKWRVRL-AIIEYMPLLAGQLGVEFFDEKLN------ALCMTWLV 477
+ L + E W+ RL A E L +G D+ + L ++
Sbjct: 6 EVDYTTLPLEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYIT 65
Query: 478 DHVYAIREAATLNLKKLVEQFGSEWAQST------------VIPKVVAMSRDQNYLHRMT 525
D +E A + L L++ F S ++ ++ K + SR +
Sbjct: 66 DSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATT---KTQ 122
Query: 526 CLFCINVLAEACG-PTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGP-ILETNVIQS 583
+ CI L T + ++P +A V + + G +
Sbjct: 123 SMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLP 182
Query: 584 QVKPALDKLNGDTDVDVKYFAQEAISSI 611
++ + +L G D +V+ I I
Sbjct: 183 ELLKHVPQLAGHGDRNVRSQTMNLIVEI 210
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle,
alternative splicing, endocytosis, lipid-binding, golgi
apparatus, adaptor, membrane, transport; HET: IHP; 2.59A
{Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Length = 621
Score = 29.5 bits (66), Expect = 3.4
Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 6/115 (5%)
Query: 204 KTDIIPMFVN-LAQDEQDS---VRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSGDTSW 259
+++I + N + D LA+ ++ S + L +GDT
Sbjct: 105 NSELIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILV--AGDTMD 162
Query: 260 RVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSEAEVRAAAANKVRDFCQN 314
V+ A L + + D LL D V AA + + Q
Sbjct: 163 SVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK 217
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats,
cell adhesion-CE complex; 3.01A {Homo sapiens}
Length = 458
Score = 29.2 bits (65), Expect = 4.0
Identities = 31/284 (10%), Positives = 81/284 (28%), Gaps = 44/284 (15%)
Query: 183 VRRAAAGKLGELAKVVEVDYLKTDI-----IPMFVNLAQDEQDSVRLLAVEACVSIASLL 237
A L +L+ E + + + L Q + + L +++
Sbjct: 164 QICPAVCVLMKLSFDEEH---RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITL---- 216
Query: 238 SQSDVEQLVMPTLRQCSGDTSWRVRYMVADKFTDLQKAVGPEITKTDLVQAFQMLLKDSE 297
M GD + + + ++A LK
Sbjct: 217 ----RRYAGMALTNLTFGDVANKATL----------------CSMKGCMRALVAQLKSES 256
Query: 298 AEVRAAAANKVRDFCQNLDAYNQENIIMTYILP-YVKDLVADPNQHVKSALASVIMGLS- 355
+++ A+ +R+ D +++ + + ++ + + ++ S + LS
Sbjct: 257 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA 316
Query: 356 -------PILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV-NEVIGIQQWRVRLA 407
I + L+ + + + + L V + + + R L
Sbjct: 317 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR 376
Query: 408 IIEYMPLLAGQLGVEFFDEKLNALSIV-ELAEDSKWRVRLAIIE 450
+ L L NA + L+ + + + A+ +
Sbjct: 377 ENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNP-KDQEALWD 419
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for
structural genomics, JCSG; HET: MSE PLP; 2.10A
{Eubacterium rectale}
Length = 398
Score = 29.1 bits (66), Expect = 4.3
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 299 EVRAAAANKV-RDFCQNLDAYNQENIIMT 326
E RAA A + +N +N+ MT
Sbjct: 80 ETRAAIAEFLNNTH--GTH-FNADNLYMT 105
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 4.5
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 9/39 (23%)
Query: 64 EDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVE 102
E + L L L + + P L AT+E
Sbjct: 18 EKQALKKLQASLKLYADDSA---------PALAIKATME 47
Score = 28.4 bits (62), Expect = 4.6
Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 10/23 (43%)
Query: 32 NSIKKL----------STIALAL 44
++KKL S ALA+
Sbjct: 20 QALKKLQASLKLYADDSAPALAI 42
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan
synthesis, cell WALL biogenesis/degradation, secreted,
cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis}
PDB: 2vfw_A* 2vg1_A*
Length = 227
Score = 28.2 bits (64), Expect = 5.8
Identities = 3/31 (9%), Positives = 12/31 (38%), Gaps = 3/31 (9%)
Query: 364 VDHLLPLFLSQLKDECPE---VRLNIISNLD 391
+ L+ + +++ C + + +L
Sbjct: 68 LAALIEIITDVVEEICAPANHWSVRTVGDLG 98
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel,
ligand binding protein; HET: SAM; 2.20A {Staphylococcus
aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Length = 340
Score = 28.7 bits (65), Expect = 6.1
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 13/39 (33%)
Query: 427 KLNA-----------LSIVELAEDSKWRVRLAIIEYMPL 454
K+N + ++E +D +R IE+M +
Sbjct: 163 KVNVVIQKGINDDQIIPMLEYFKDKHIEIRF--IEFMDV 199
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A
{Bacillus phage SPP1}
Length = 444
Score = 28.6 bits (65), Expect = 6.6
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 68 LLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEE--TVVRDKAVESLR-LISA 119
++A ++G P +GG Y+ L + S T ++ V + R IS
Sbjct: 66 FTSIAARVGEKLPQLGGFGYLTELAASVASTTTFKQHCQTVSEYFQ--KRKAISI 118
>3eau_A Voltage-gated potassium channel subunit beta-2; kvbeta, cortisone,
NADPH, cytoplasm, ION transport, ionic channel, NADP,
phosphoprotein; HET: NDP PDN; 1.82A {Rattus norvegicus}
SCOP: c.1.7.1 PDB: 2r9r_A* 2a79_A* 3lnm_A* 1exb_A*
3eb4_A* 3eb3_A* 1qrq_A* 1zsx_A*
Length = 327
Score = 28.3 bits (64), Expect = 8.5
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 4 SDSAPDDS---LYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQ 46
P S L L D++ +E+ + + +K+L IA LG
Sbjct: 222 DSGIPPYSRASLKGYQWLKDKILSEEGRRQQAKLKELQAIAERLGC 267
>3lut_A Voltage-gated potassium channel subunit beta-2; voltage gating,
potassium channel, KV1.2, gating charges, no analysis,
ION transport; HET: NAP; 2.90A {Rattus norvegicus}
Length = 367
Score = 28.0 bits (63), Expect = 8.6
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 4 SDSAPDDS---LYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQ 46
P S L L D++ +E+ + + +K+L IA LG
Sbjct: 256 DSGIPPYSRASLKGYQWLKDKILSEEGRRQQAKLKELQAIAERLGC 301
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo
sapiens} SCOP: a.118.1.24
Length = 457
Score = 28.3 bits (62), Expect = 9.5
Identities = 24/126 (19%), Positives = 42/126 (33%), Gaps = 16/126 (12%)
Query: 89 HCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAH--FVPLVQRLASGDWFTS- 145
LP + L + V L +S H + + F + + L S TS
Sbjct: 330 EKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSN 389
Query: 146 ----RTSACG-LFSVCYPRVTAGVKAELRSH-----FRNLCQD-DTPMVRRAAAGKLGEL 194
+SAC + ++ + + S NLC+ +P AA L ++
Sbjct: 390 SEDILSSACYTVRNLMASQPQL--AKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447
Query: 195 AKVVEV 200
E+
Sbjct: 448 WSSKEL 453
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.388
Gapped
Lambda K H
0.267 0.0509 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,212,596
Number of extensions: 566031
Number of successful extensions: 1636
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1250
Number of HSP's successfully gapped: 178
Length of query: 615
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 516
Effective length of database: 3,937,614
Effective search space: 2031808824
Effective search space used: 2031808824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.4 bits)