BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14015
(318 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|D Chain D, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2PF4|A Chain A, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|B Chain B, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|C Chain C, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|D Chain D, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
Length = 589
Score = 413 bits (1061), Expect = e-116, Method: Compositional matrix adjust.
Identities = 212/284 (74%), Positives = 230/284 (80%), Gaps = 32/284 (11%)
Query: 1 MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
MA++D DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+T
Sbjct: 1 MAAADG--DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDT 58
Query: 61 IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
IYDEDEVLLALAEQLGTFT VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +
Sbjct: 59 IYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE 118
Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
HSP DLEAHFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDT
Sbjct: 119 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT 178
Query: 181 PMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPM 240
PMVRRAAA KLGE AKV+E+D +K++IIPM
Sbjct: 179 ------------------------------PMVRRAAASKLGEFAKVLELDNVKSEIIPM 208
Query: 241 FVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS 284
F NLA DEQDSVRLLAVEACV+IA LL Q D+E LVMPTLRQ +
Sbjct: 209 FSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAA 252
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 100/276 (36%), Gaps = 56/276 (20%)
Query: 70 ALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAH 129
A A +LG F + ++P +LA+ E+ VR AVE+ I+ DLEA
Sbjct: 184 AAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEAL 243
Query: 130 FVPLVQRLAS----------GDWFTSRTSACG--------------LFSVCYPRVTAGVK 165
+P +++ A D FT A G L C V A
Sbjct: 244 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAAS 303
Query: 166 AELRSHFRNL---CQDDTPMQQ------GHVWECGSGVKAELRSHFRNLC---------- 206
+++ NL C+++ M Q V + VK+ L S L
Sbjct: 304 HKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIE 363
Query: 207 ----------QDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLA 256
+D+ P VR L + +V+ + L ++P V LA+D + VRL
Sbjct: 364 HLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAI 423
Query: 257 VEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKF 292
+E + L Q VE C +VDH +
Sbjct: 424 IE---YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVY 456
>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Tumor- Inducing Toxins
pdb|2IE4|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Okadaic Acid
pdb|2NPP|A Chain A, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|D Chain D, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|3K7V|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-1
pdb|3K7W|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-2
Length = 589
Score = 413 bits (1061), Expect = e-116, Method: Compositional matrix adjust.
Identities = 212/284 (74%), Positives = 230/284 (80%), Gaps = 32/284 (11%)
Query: 1 MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
MA++D DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+T
Sbjct: 1 MAAADG--DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDT 58
Query: 61 IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ 120
IYDEDEVLLALAEQLGTFT VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +
Sbjct: 59 IYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE 118
Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
HSP DLEAHFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDT
Sbjct: 119 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT 178
Query: 181 PMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPM 240
PMVRRAAA KLGE AKV+E+D +K++IIPM
Sbjct: 179 ------------------------------PMVRRAAASKLGEFAKVLELDNVKSEIIPM 208
Query: 241 FVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS 284
F NLA DEQDSVRLLAVEACV+IA LL Q D+E LVMPTLRQ +
Sbjct: 209 FSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAA 252
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 100/276 (36%), Gaps = 56/276 (20%)
Query: 70 ALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAH 129
A A +LG F + ++P +LA+ E+ VR AVE+ I+ DLEA
Sbjct: 184 AAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEAL 243
Query: 130 FVPLVQRLAS----------GDWFTSRTSACG--------------LFSVCYPRVTAGVK 165
+P +++ A D FT A G L C V A
Sbjct: 244 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAAS 303
Query: 166 AELRSHFRNL---CQDDTPMQQ------GHVWECGSGVKAELRSHFRNLC---------- 206
+++ NL C+++ M Q V + VK+ L S L
Sbjct: 304 HKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIE 363
Query: 207 ----------QDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLA 256
+D+ P VR L + +V+ + L ++P V LA+D + VRL
Sbjct: 364 HLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAI 423
Query: 257 VEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKF 292
+E + L Q VE C +VDH +
Sbjct: 424 IE---YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVY 456
>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
pdb|1B3U|B Chain B, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
Length = 588
Score = 411 bits (1056), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/276 (75%), Positives = 225/276 (81%), Gaps = 30/276 (10%)
Query: 9 DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVL 68
DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+TIYDEDEVL
Sbjct: 6 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 65
Query: 69 LALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEA 128
LALAEQLGTFT VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +HSP DLEA
Sbjct: 66 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125
Query: 129 HFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVW 188
HFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDT
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT-------- 177
Query: 189 ECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDE 248
PMVRRAAA KLGE AKV+E+D +K++IIPMF NLA DE
Sbjct: 178 ----------------------PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDE 215
Query: 249 QDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS 284
QDSVRLLAVEACV+IA LL Q D+E LVMPTLRQ +
Sbjct: 216 QDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAA 251
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 100/276 (36%), Gaps = 56/276 (20%)
Query: 70 ALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAH 129
A A +LG F + ++P +LA+ E+ VR AVE+ I+ DLEA
Sbjct: 183 AAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEAL 242
Query: 130 FVPLVQRLAS----------GDWFTSRTSACG--------------LFSVCYPRVTAGVK 165
+P +++ A D FT A G L C V A
Sbjct: 243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAAS 302
Query: 166 AELRSHFRNL---CQDDTPMQQ------GHVWECGSGVKAELRSHFRNLC---------- 206
+++ NL C+++ M Q V + VK+ L S L
Sbjct: 303 HKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIE 362
Query: 207 ----------QDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLA 256
+D+ P VR L + +V+ + L ++P V LA+D + VRL
Sbjct: 363 HLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAI 422
Query: 257 VEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKF 292
+E + L Q VE C +VDH +
Sbjct: 423 IE---YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVY 455
>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction
Length = 588
Score = 410 bits (1055), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/276 (75%), Positives = 225/276 (81%), Gaps = 30/276 (10%)
Query: 9 DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVL 68
DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+TIYDEDEVL
Sbjct: 6 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 65
Query: 69 LALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEA 128
LALAEQLGTFT VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +HSP DLEA
Sbjct: 66 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125
Query: 129 HFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVW 188
HFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDT
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT-------- 177
Query: 189 ECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDE 248
PMVRRAAA KLGE AKV+E+D +K++IIPMF NLA DE
Sbjct: 178 ----------------------PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDE 215
Query: 249 QDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS 284
QDSVRLLAVEACV+IA LL Q D+E LVMPTLRQ +
Sbjct: 216 QDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAA 251
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 100/276 (36%), Gaps = 56/276 (20%)
Query: 70 ALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAH 129
A A +LG F + ++P +LA+ E+ VR AVE+ I+ DLEA
Sbjct: 183 AAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEAL 242
Query: 130 FVPLVQRLAS----------GDWFTSRTSACG--------------LFSVCYPRVTAGVK 165
+P +++ A D FT A G L C V A
Sbjct: 243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAAS 302
Query: 166 AELRSHFRNL---CQDDTPMQQ------GHVWECGSGVKAELRSHFRNLC---------- 206
+++ NL C+++ M Q V + VK+ L S L
Sbjct: 303 HKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIE 362
Query: 207 ----------QDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLA 256
+D+ P VR L + +V+ + L ++P V LA+D + VRL
Sbjct: 363 HLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAI 422
Query: 257 VEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKF 292
+E + L Q VE C +VDH +
Sbjct: 423 IE---YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVY 455
>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|D Chain D, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 582
Score = 406 bits (1043), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/274 (75%), Positives = 223/274 (81%), Gaps = 30/274 (10%)
Query: 11 SLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLA 70
SLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+TIYDEDEVLLA
Sbjct: 2 SLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLA 61
Query: 71 LAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHF 130
LAEQLGTFT VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +HSP DLEAHF
Sbjct: 62 LAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 121
Query: 131 VPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWEC 190
VPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDT
Sbjct: 122 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT---------- 171
Query: 191 GSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQD 250
PMVRRAAA KLGE AKV+E+D +K++IIPMF NLA DEQD
Sbjct: 172 --------------------PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQD 211
Query: 251 SVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS 284
SVRLLAVEACV+IA LL Q D+E LVMPTLRQ +
Sbjct: 212 SVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAA 245
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 100/276 (36%), Gaps = 56/276 (20%)
Query: 70 ALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAH 129
A A +LG F + ++P +LA+ E+ VR AVE+ I+ DLEA
Sbjct: 177 AAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEAL 236
Query: 130 FVPLVQRLAS----------GDWFTSRTSACG--------------LFSVCYPRVTAGVK 165
+P +++ A D FT A G L C V A
Sbjct: 237 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAAS 296
Query: 166 AELRSHFRNL---CQDDTPMQQ------GHVWECGSGVKAELRSHFRNLC---------- 206
+++ NL C+++ M Q V + VK+ L S L
Sbjct: 297 HKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIE 356
Query: 207 ----------QDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLA 256
+D+ P VR L + +V+ + L ++P V LA+D + VRL
Sbjct: 357 HLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAI 416
Query: 257 VEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKF 292
+E + L Q VE C +VDH +
Sbjct: 417 IE---YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVY 449
>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
pdb|2PKG|B Chain B, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
Length = 580
Score = 405 bits (1040), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/273 (75%), Positives = 222/273 (81%), Gaps = 30/273 (10%)
Query: 12 LYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLAL 71
LYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+TIYDEDEVLLAL
Sbjct: 1 LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLAL 60
Query: 72 AEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFV 131
AEQLGTFT VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +HSP DLEAHFV
Sbjct: 61 AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 120
Query: 132 PLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECG 191
PLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDT
Sbjct: 121 PLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT----------- 169
Query: 192 SGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDS 251
PMVRRAAA KLGE AKV+E+D +K++IIPMF NLA DEQDS
Sbjct: 170 -------------------PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDS 210
Query: 252 VRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS 284
VRLLAVEACV+IA LL Q D+E LVMPTLRQ +
Sbjct: 211 VRLLAVEACVNIAQLLPQEDLEALVMPTLRQAA 243
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 100/276 (36%), Gaps = 56/276 (20%)
Query: 70 ALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAH 129
A A +LG F + ++P +LA+ E+ VR AVE+ I+ DLEA
Sbjct: 175 AAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEAL 234
Query: 130 FVPLVQRLAS----------GDWFTSRTSACG--------------LFSVCYPRVTAGVK 165
+P +++ A D FT A G L C V A
Sbjct: 235 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAAS 294
Query: 166 AELRSHFRNL---CQDDTPMQQ------GHVWECGSGVKAELRSHFRNLC---------- 206
+++ NL C+++ M Q V + VK+ L S L
Sbjct: 295 HKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIE 354
Query: 207 ----------QDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLA 256
+D+ P VR L + +V+ + L ++P V LA+D + VRL
Sbjct: 355 HLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAI 414
Query: 257 VEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKF 292
+E + L Q VE C +VDH +
Sbjct: 415 IE---YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVY 447
>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 582
Score = 400 bits (1027), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/275 (74%), Positives = 221/275 (80%), Gaps = 30/275 (10%)
Query: 10 DSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLL 69
DSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+TIYDEDEVLL
Sbjct: 1 DSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLL 60
Query: 70 ALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAH 129
ALAEQLGTFT VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +HSP DLEAH
Sbjct: 61 ALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH 120
Query: 130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWE 189
FVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC D
Sbjct: 121 FVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSD----------- 169
Query: 190 CGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQ 249
DTP VRRAAA KLGE AKV+E+D +K++IIP F NLA DEQ
Sbjct: 170 -------------------DTPXVRRAAASKLGEFAKVLELDNVKSEIIPXFSNLASDEQ 210
Query: 250 DSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS 284
DSVRLLAVEACV+IA LL Q D+E LV PTLRQ +
Sbjct: 211 DSVRLLAVEACVNIAQLLPQEDLEALVXPTLRQAA 245
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 101/283 (35%), Gaps = 56/283 (19%)
Query: 63 DEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHS 122
D V A A +LG F + ++P +LA+ E+ VR AVE+ I+
Sbjct: 170 DTPXVRRAAASKLGEFAKVLELDNVKSEIIPXFSNLASDEQDSVRLLAVEACVNIAQLLP 229
Query: 123 PHDLEAHFVPLVQRLAS----------GDWFTSRTSACG--------------LFSVCYP 158
DLEA P +++ A D FT A G L C
Sbjct: 230 QEDLEALVXPTLRQAAEDKSWRVRYXVADKFTELQKAVGPEITKTDLVPAFQNLXKDCEA 289
Query: 159 RVTAGVKAELRSHFRNL---CQDDT------PMQQGHVWECGSGVKAELRSHFRNLC--- 206
V A +++ NL C+++ P + V + VK+ L S L
Sbjct: 290 EVRAAASHKVKEFCENLSADCRENVIXSQILPCIKELVSDANQHVKSALASVIXGLSPIL 349
Query: 207 -----------------QDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQ 249
+D+ P VR L + +V+ + L ++P V LA+D +
Sbjct: 350 GKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAK 409
Query: 250 DSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKF 292
VRL +E +A Q VE C +VDH +
Sbjct: 410 WRVRLAIIEYXPLLA---GQLGVEFFDEKLNSLCXAWLVDHVY 449
>pdb|3C5W|A Chain A, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 232
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 115/256 (44%), Gaps = 42/256 (16%)
Query: 11 SLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLL 69
SLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ER L+P + E D V L
Sbjct: 5 SLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERLSQSLLPAIVELAEDAKWRVRL 64
Query: 70 ALAEQLGTFTPNVGGPEYVHCLLPPLESLATV----EETVVRDKAVESLRLISAQHSPHD 125
A+ E + P + G V L SL +R+ A +L+ + +
Sbjct: 65 AIIE----YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW 120
Query: 126 LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQG 185
A +P V ++ + R + LF + V +E+
Sbjct: 121 AHATIIPKVLAMSGDPNYLHRMTT--LFCI-------NVLSEV----------------- 154
Query: 186 HVWECGSGV--KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVN 243
CG + K L + R + D VR A L ++ +++ L++++ P+
Sbjct: 155 ----CGQDITTKHMLPTVLR-MAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEK 209
Query: 244 LAQDEQDSVRLLAVEA 259
L QD+ V+ A EA
Sbjct: 210 LTQDQDVDVKYFAQEA 225
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 213 VRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV 272
+R + KL +A + V+ L ++P V LA+D + VRL +E +A Q V
Sbjct: 23 LRLNSIKKLSTIALALGVERLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLA---GQLGV 79
Query: 273 EQLVMPTLRQCSVQIVDHKFC 293
E C +VDH +
Sbjct: 80 EFFDEKLNSLCMAWLVDHVYA 100
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 14/68 (20%)
Query: 41 ALALGQERTRGELIPFLTETIYD---------EDEVLLALAEQLGTFTPNVG----GPEY 87
A A +E EL+P+L I D + + LL L + +GT +VG PEY
Sbjct: 503 AFATLEEEACTELVPYLA-YILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEY 561
Query: 88 VHCLLPPL 95
+ L+PPL
Sbjct: 562 IQMLMPPL 569
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 14/68 (20%)
Query: 41 ALALGQERTRGELIPFLTETIYD---------EDEVLLALAEQLGTFTPNVG----GPEY 87
A A +E EL+P+L I D + + LL L + +GT +VG PEY
Sbjct: 478 AFATLEEEACTELVPYLA-YILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEY 536
Query: 88 VHCLLPPL 95
+ L+PPL
Sbjct: 537 IQMLMPPL 544
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 14/68 (20%)
Query: 41 ALALGQERTRGELIPFLTETIYD---------EDEVLLALAEQLGTFTPNVG----GPEY 87
A A +E EL+P+L I D + + LL L + +GT +VG PEY
Sbjct: 465 AFATLEEEACTELVPYLA-YILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEY 523
Query: 88 VHCLLPPL 95
+ L+PPL
Sbjct: 524 IQMLMPPL 531
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 14/75 (18%)
Query: 34 IKKLSTIALALGQERTRGELIPFLTETIYD---------EDEVLLALAEQLGTFTPNVG- 83
+++ + A A +E EL+P+L I D + + LL L + +GT +VG
Sbjct: 496 VQEAACSAFATLEEEACTELVPYLA-YILDTLVFAFSKYQHKNLLILYDAIGTLADSVGH 554
Query: 84 ---GPEYVHCLLPPL 95
PEY+ L PPL
Sbjct: 555 HLNKPEYIQXLXPPL 569
>pdb|2D4G|A Chain A, Structure Of Yjcg Protein, A Putative 2'-5' Rna Ligase
From Bacillus Subtilis
pdb|2D4G|B Chain B, Structure Of Yjcg Protein, A Putative 2'-5' Rna Ligase
From Bacillus Subtilis
Length = 171
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 188 WECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTD 236
+EC +L SH RN+ ++ P+V + K A V V Y+K +
Sbjct: 41 FECAEEKADQLVSHLRNIAKESHPLVLKXT--KYSSFAPVNNVIYIKAE 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,452,190
Number of Sequences: 62578
Number of extensions: 311825
Number of successful extensions: 890
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 798
Number of HSP's gapped (non-prelim): 42
length of query: 318
length of database: 14,973,337
effective HSP length: 99
effective length of query: 219
effective length of database: 8,778,115
effective search space: 1922407185
effective search space used: 1922407185
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)