Query psy14015
Match_columns 318
No_of_seqs 125 out of 1301
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 17:22:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14015.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14015hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0211|consensus 99.9 5.7E-24 1.2E-28 208.7 17.6 283 9-291 78-371 (759)
2 KOG0211|consensus 99.8 3.6E-19 7.8E-24 175.1 15.7 285 16-310 319-621 (759)
3 PRK09687 putative lyase; Provi 99.8 6E-18 1.3E-22 151.2 18.2 247 14-309 24-277 (280)
4 PRK13800 putative oxidoreducta 99.7 2.6E-16 5.6E-21 161.8 19.4 246 14-308 622-893 (897)
5 PRK09687 putative lyase; Provi 99.7 5.6E-16 1.2E-20 138.6 16.6 210 51-286 22-234 (280)
6 PRK13800 putative oxidoreducta 99.7 9.1E-16 2E-20 157.8 17.8 217 15-261 654-895 (897)
7 KOG1240|consensus 99.6 1.7E-14 3.7E-19 143.7 17.1 238 17-308 429-679 (1431)
8 KOG2171|consensus 99.5 1.2E-12 2.7E-17 130.8 22.3 269 17-286 83-442 (1075)
9 KOG2023|consensus 99.5 3.1E-12 6.7E-17 121.3 17.0 280 9-291 9-450 (885)
10 KOG2171|consensus 99.4 7.4E-12 1.6E-16 125.4 19.9 285 15-309 120-499 (1075)
11 KOG1240|consensus 99.4 3.6E-12 7.8E-17 127.4 14.9 241 15-285 464-745 (1431)
12 PF01602 Adaptin_N: Adaptin N 99.3 2.1E-11 4.6E-16 119.0 14.8 281 6-310 72-365 (526)
13 KOG1243|consensus 99.2 5.4E-11 1.2E-15 114.2 11.0 245 12-286 253-497 (690)
14 KOG1242|consensus 99.2 1.1E-09 2.3E-14 104.1 19.3 254 17-309 138-439 (569)
15 KOG2023|consensus 99.2 4.9E-10 1.1E-14 106.7 14.9 236 16-285 218-520 (885)
16 COG1413 FOG: HEAT repeat [Ener 99.1 2.2E-09 4.8E-14 98.9 16.7 184 14-264 44-241 (335)
17 KOG1242|consensus 99.1 7.9E-09 1.7E-13 98.3 18.5 239 15-286 218-464 (569)
18 PF12348 CLASP_N: CLASP N term 99.1 4E-09 8.6E-14 91.9 14.5 193 11-231 4-211 (228)
19 KOG2259|consensus 99.1 1.5E-09 3.4E-14 103.2 12.0 236 51-305 197-466 (823)
20 PTZ00429 beta-adaptin; Provisi 99.0 2.3E-08 5.1E-13 100.1 19.8 113 5-121 97-210 (746)
21 PLN03200 cellulose synthase-in 99.0 2.5E-08 5.4E-13 107.4 20.7 254 14-309 489-759 (2102)
22 COG1413 FOG: HEAT repeat [Ener 99.0 6.5E-09 1.4E-13 95.8 14.4 179 52-307 43-235 (335)
23 TIGR02270 conserved hypothetic 99.0 2.1E-08 4.6E-13 94.1 16.9 204 15-264 88-295 (410)
24 KOG0166|consensus 99.0 4.6E-08 9.9E-13 92.5 18.3 242 15-285 154-417 (514)
25 PF01602 Adaptin_N: Adaptin N 99.0 9.7E-08 2.1E-12 93.2 21.5 273 15-308 233-518 (526)
26 TIGR02270 conserved hypothetic 99.0 3.7E-08 8E-13 92.5 17.4 200 15-286 56-280 (410)
27 KOG1243|consensus 98.9 4.2E-09 9.1E-14 101.4 9.9 195 47-270 325-520 (690)
28 PF12348 CLASP_N: CLASP N term 98.9 2.6E-08 5.7E-13 86.7 13.7 189 51-271 6-212 (228)
29 KOG1824|consensus 98.9 2.1E-07 4.7E-12 92.0 20.4 266 14-317 48-404 (1233)
30 PLN03200 cellulose synthase-in 98.9 1.3E-07 2.9E-12 102.0 20.5 242 15-286 532-791 (2102)
31 KOG1241|consensus 98.9 3.2E-08 6.9E-13 95.8 13.9 269 18-288 95-419 (859)
32 PTZ00429 beta-adaptin; Provisi 98.8 6E-07 1.3E-11 90.1 21.9 275 14-312 33-324 (746)
33 KOG0166|consensus 98.8 2.7E-07 6E-12 87.4 17.6 242 15-286 111-375 (514)
34 PF13646 HEAT_2: HEAT repeats; 98.8 2.8E-08 6E-13 72.9 8.9 85 132-261 2-88 (88)
35 PF10508 Proteasom_PSMB: Prote 98.8 2E-06 4.3E-11 83.6 22.1 280 15-306 79-412 (503)
36 KOG1241|consensus 98.8 7.3E-07 1.6E-11 86.6 18.4 269 15-286 131-460 (859)
37 COG5240 SEC21 Vesicle coat com 98.8 1.4E-06 3E-11 82.4 19.7 265 20-315 271-554 (898)
38 KOG0213|consensus 98.7 1.5E-06 3.2E-11 84.3 17.7 234 15-286 801-1047(1172)
39 PF13646 HEAT_2: HEAT repeats; 98.6 1.4E-07 3E-12 69.1 7.7 84 199-308 1-86 (88)
40 COG5181 HSH155 U2 snRNP splice 98.6 4.1E-06 8.9E-11 79.9 18.2 243 15-305 606-861 (975)
41 PF12755 Vac14_Fab1_bd: Vacuol 98.6 6.9E-07 1.5E-11 66.8 9.8 69 194-263 24-94 (97)
42 PF10508 Proteasom_PSMB: Prote 98.5 1.4E-05 2.9E-10 77.8 20.4 257 14-307 39-312 (503)
43 KOG0213|consensus 98.5 4.4E-06 9.5E-11 81.2 16.3 214 17-269 367-586 (1172)
44 KOG0567|consensus 98.4 4.3E-06 9.4E-11 72.2 12.7 179 51-264 66-279 (289)
45 PF12755 Vac14_Fab1_bd: Vacuol 98.4 2.3E-06 5E-11 64.0 8.8 83 213-305 2-88 (97)
46 KOG4224|consensus 98.4 2.5E-06 5.4E-11 76.8 9.8 207 52-288 86-305 (550)
47 KOG1824|consensus 98.4 4.8E-05 1E-09 75.9 19.3 267 9-286 813-1116(1233)
48 KOG0212|consensus 98.4 8.3E-06 1.8E-10 77.1 13.5 236 23-286 53-302 (675)
49 PF04826 Arm_2: Armadillo-like 98.4 2.8E-05 6E-10 68.6 16.0 209 59-306 19-254 (254)
50 KOG0915|consensus 98.4 1.1E-05 2.3E-10 83.8 15.1 223 32-286 940-1183(1702)
51 KOG0915|consensus 98.3 3.6E-05 7.9E-10 80.0 18.7 263 15-286 1041-1327(1702)
52 COG5181 HSH155 U2 snRNP splice 98.3 2.4E-05 5.2E-10 74.8 16.2 231 17-286 692-929 (975)
53 KOG2137|consensus 98.3 1.5E-05 3.3E-10 77.6 15.2 237 17-287 277-520 (700)
54 PF12717 Cnd1: non-SMC mitotic 98.3 3.2E-05 6.9E-10 64.7 15.3 148 103-282 1-153 (178)
55 KOG1060|consensus 98.3 0.00012 2.6E-09 71.9 20.7 277 5-293 100-447 (968)
56 KOG2956|consensus 98.3 2.9E-05 6.3E-10 72.1 15.5 202 8-246 278-493 (516)
57 KOG2259|consensus 98.3 3.7E-05 7.9E-10 74.1 16.1 224 15-260 200-470 (823)
58 KOG0212|consensus 98.3 2E-05 4.4E-10 74.6 13.7 252 18-305 5-270 (675)
59 COG5215 KAP95 Karyopherin (imp 98.3 7.6E-05 1.6E-09 71.0 17.2 269 19-288 100-421 (858)
60 KOG1060|consensus 98.3 9.2E-05 2E-09 72.7 18.2 269 16-310 38-346 (968)
61 KOG1820|consensus 98.2 3.5E-05 7.5E-10 77.7 15.8 188 16-232 256-449 (815)
62 cd00020 ARM Armadillo/beta-cat 98.2 6.1E-06 1.3E-10 63.5 8.4 110 129-264 7-119 (120)
63 PF02985 HEAT: HEAT repeat; I 98.2 2.1E-06 4.6E-11 50.0 4.0 29 198-226 1-29 (31)
64 KOG4224|consensus 98.2 2E-05 4.4E-10 71.1 11.9 223 15-265 210-446 (550)
65 PF12717 Cnd1: non-SMC mitotic 98.2 8E-05 1.7E-09 62.3 15.0 112 26-140 1-113 (178)
66 KOG0567|consensus 98.2 2.9E-05 6.2E-10 67.2 11.7 243 15-308 5-274 (289)
67 PF13513 HEAT_EZ: HEAT-like re 98.2 2.5E-06 5.3E-11 56.8 4.0 53 211-263 1-55 (55)
68 COG5064 SRP1 Karyopherin (impo 98.2 9.5E-06 2E-10 72.6 8.7 273 14-288 72-382 (526)
69 KOG1820|consensus 98.1 9.8E-05 2.1E-09 74.5 16.4 200 44-276 245-454 (815)
70 PF02985 HEAT: HEAT repeat; I 98.1 6.1E-06 1.3E-10 48.0 4.4 30 237-266 1-30 (31)
71 COG5240 SEC21 Vesicle coat com 98.1 0.00016 3.4E-09 69.0 15.2 243 11-264 300-554 (898)
72 KOG1061|consensus 98.1 4.3E-05 9.3E-10 74.9 11.9 115 5-123 78-193 (734)
73 KOG2062|consensus 98.1 0.00015 3.2E-09 70.8 15.2 251 16-286 416-676 (929)
74 cd00020 ARM Armadillo/beta-cat 98.1 2.3E-05 4.9E-10 60.3 8.1 101 196-306 6-112 (120)
75 KOG1059|consensus 98.0 9.7E-05 2.1E-09 71.9 13.7 92 49-144 141-235 (877)
76 KOG2032|consensus 98.0 0.00026 5.6E-09 66.4 14.4 136 23-161 227-374 (533)
77 COG5215 KAP95 Karyopherin (imp 98.0 0.00034 7.3E-09 66.7 15.2 223 15-267 179-439 (858)
78 KOG4653|consensus 98.0 0.00023 5E-09 70.6 14.5 210 58-305 733-955 (982)
79 KOG1062|consensus 98.0 0.00043 9.4E-09 68.2 16.3 118 16-139 110-233 (866)
80 PF05918 API5: Apoptosis inhib 97.9 0.00024 5.2E-09 68.7 13.9 49 233-286 269-317 (556)
81 KOG2032|consensus 97.9 0.00044 9.6E-09 64.8 15.0 244 16-264 261-530 (533)
82 COG5064 SRP1 Karyopherin (impo 97.9 0.00019 4.1E-09 64.4 11.7 261 14-309 158-441 (526)
83 PF13513 HEAT_EZ: HEAT-like re 97.9 2.2E-05 4.7E-10 52.2 4.2 55 143-224 1-55 (55)
84 COG5096 Vesicle coat complex, 97.8 0.0009 2E-08 66.8 16.5 167 22-227 28-196 (757)
85 KOG2137|consensus 97.8 0.00061 1.3E-08 66.7 14.7 94 193-286 385-479 (700)
86 PF12460 MMS19_C: RNAPII trans 97.8 0.005 1.1E-07 58.6 20.6 179 91-308 190-388 (415)
87 KOG1078|consensus 97.7 0.0015 3.2E-08 64.4 16.1 54 241-306 471-524 (865)
88 KOG4653|consensus 97.7 0.0018 3.9E-08 64.5 16.6 204 8-248 722-935 (982)
89 COG5096 Vesicle coat complex, 97.7 0.0012 2.7E-08 65.9 15.1 109 7-120 86-196 (757)
90 PF05004 IFRD: Interferon-rela 97.7 0.01 2.2E-07 54.1 19.9 209 14-249 44-286 (309)
91 KOG1949|consensus 97.6 0.001 2.2E-08 64.9 12.6 146 127-294 172-321 (1005)
92 PF05004 IFRD: Interferon-rela 97.6 0.0084 1.8E-07 54.6 18.2 178 100-312 53-255 (309)
93 KOG2025|consensus 97.6 0.0017 3.8E-08 63.4 13.4 206 15-269 87-299 (892)
94 KOG1943|consensus 97.5 0.0061 1.3E-07 62.2 17.5 237 15-265 343-611 (1133)
95 PF04826 Arm_2: Armadillo-like 97.5 0.0067 1.5E-07 53.6 16.0 214 15-255 14-252 (254)
96 PF14500 MMS19_N: Dos2-interac 97.5 0.011 2.4E-07 52.5 17.4 136 17-157 3-152 (262)
97 KOG1949|consensus 97.5 0.00061 1.3E-08 66.4 9.5 145 93-263 177-329 (1005)
98 KOG2062|consensus 97.5 0.0034 7.4E-08 61.6 14.2 161 51-253 518-682 (929)
99 COG5116 RPN2 26S proteasome re 97.5 0.0027 5.9E-08 60.7 13.2 86 198-287 587-674 (926)
100 PF12460 MMS19_C: RNAPII trans 97.4 0.0054 1.2E-07 58.4 14.8 215 53-283 190-414 (415)
101 KOG1248|consensus 97.4 0.024 5.1E-07 58.7 19.3 243 7-275 647-908 (1176)
102 KOG1061|consensus 97.3 0.01 2.2E-07 58.7 15.8 234 12-286 12-250 (734)
103 KOG2956|consensus 97.3 0.0097 2.1E-07 55.8 14.5 175 67-275 303-487 (516)
104 KOG1517|consensus 97.3 0.012 2.5E-07 60.1 15.9 215 89-316 471-734 (1387)
105 KOG1059|consensus 97.3 0.019 4.2E-07 56.4 16.9 220 8-263 139-363 (877)
106 KOG1062|consensus 97.2 0.018 3.9E-07 57.2 15.6 192 67-264 123-378 (866)
107 KOG1078|consensus 97.1 0.013 2.7E-07 58.2 14.1 63 200-264 469-531 (865)
108 PF05918 API5: Apoptosis inhib 97.1 0.011 2.4E-07 57.5 13.4 104 194-313 56-161 (556)
109 KOG1967|consensus 97.1 0.008 1.7E-07 60.5 12.1 153 85-264 862-1023(1030)
110 KOG2933|consensus 96.9 0.032 7E-07 49.8 13.5 142 15-161 90-237 (334)
111 KOG1248|consensus 96.9 0.17 3.8E-06 52.6 20.4 204 61-286 663-880 (1176)
112 KOG0168|consensus 96.9 0.027 5.8E-07 56.5 13.9 187 14-228 168-366 (1051)
113 COG5218 YCG1 Chromosome conden 96.8 0.0076 1.6E-07 58.0 9.3 131 6-148 83-218 (885)
114 KOG2025|consensus 96.8 0.12 2.7E-06 51.0 17.3 220 67-308 62-288 (892)
115 KOG1967|consensus 96.7 0.017 3.6E-07 58.3 11.4 106 195-310 907-1020(1030)
116 KOG1058|consensus 96.7 0.14 3E-06 50.9 17.4 34 7-40 14-47 (948)
117 PF12719 Cnd3: Nuclear condens 96.7 0.078 1.7E-06 48.1 15.1 170 97-286 34-208 (298)
118 PF01347 Vitellogenin_N: Lipop 96.6 0.027 5.9E-07 56.3 12.5 92 194-306 487-581 (618)
119 KOG1517|consensus 96.6 0.1 2.2E-06 53.7 15.8 188 51-264 511-731 (1387)
120 KOG1943|consensus 96.6 0.2 4.3E-06 51.7 17.6 143 126-307 338-493 (1133)
121 KOG1077|consensus 96.5 0.32 7E-06 48.1 18.1 69 195-268 367-436 (938)
122 COG5116 RPN2 26S proteasome re 96.5 0.023 5E-07 54.6 10.0 80 198-286 552-632 (926)
123 COG5218 YCG1 Chromosome conden 96.5 0.026 5.6E-07 54.5 10.2 85 67-153 107-194 (885)
124 PF01347 Vitellogenin_N: Lipop 96.3 0.17 3.7E-06 50.7 15.9 91 197-306 521-614 (618)
125 KOG4413|consensus 96.3 0.24 5.1E-06 44.9 14.6 200 48-274 78-292 (524)
126 PF12719 Cnd3: Nuclear condens 96.2 0.17 3.6E-06 45.9 14.0 153 67-249 43-210 (298)
127 PF05804 KAP: Kinesin-associat 96.2 0.33 7.2E-06 49.0 16.9 257 15-288 292-589 (708)
128 KOG0414|consensus 96.2 0.14 3E-06 53.2 14.2 144 85-264 914-1063(1251)
129 PF13001 Ecm29: Proteasome sta 95.9 0.1 2.2E-06 50.9 12.0 194 51-269 237-447 (501)
130 KOG0946|consensus 95.8 0.15 3.2E-06 51.0 12.2 135 15-168 24-161 (970)
131 smart00638 LPD_N Lipoprotein N 95.8 0.43 9.3E-06 47.4 15.8 29 130-158 394-426 (574)
132 PF07571 DUF1546: Protein of u 95.8 0.039 8.5E-07 40.7 6.4 72 207-280 16-89 (92)
133 KOG0414|consensus 95.8 0.062 1.3E-06 55.7 9.7 129 122-286 912-1046(1251)
134 KOG1058|consensus 95.6 0.74 1.6E-05 46.0 16.0 275 17-309 103-438 (948)
135 KOG1077|consensus 95.6 2.1 4.7E-05 42.6 18.9 168 94-267 373-552 (938)
136 KOG4535|consensus 95.5 0.13 2.9E-06 48.7 10.2 79 208-286 495-584 (728)
137 COG5098 Chromosome condensatio 95.4 1.4 3.1E-05 43.8 17.1 112 132-264 302-414 (1128)
138 KOG0413|consensus 95.4 0.15 3.3E-06 52.0 10.5 169 91-264 473-644 (1529)
139 KOG0946|consensus 95.3 0.28 6E-06 49.2 12.1 205 51-314 21-236 (970)
140 KOG0392|consensus 95.3 0.69 1.5E-05 48.8 15.3 160 15-228 79-239 (1549)
141 KOG2933|consensus 95.3 0.28 6E-06 44.0 10.9 140 98-268 96-237 (334)
142 PF14500 MMS19_N: Dos2-interac 95.2 2 4.2E-05 38.2 16.4 48 233-280 205-252 (262)
143 smart00638 LPD_N Lipoprotein N 95.1 2.6 5.6E-05 41.9 18.9 133 91-263 394-543 (574)
144 PF12530 DUF3730: Protein of u 95.1 0.95 2E-05 39.5 14.0 55 98-154 9-63 (234)
145 PF04118 Dopey_N: Dopey, N-ter 95.0 1 2.2E-05 41.0 14.1 165 104-315 69-250 (307)
146 PF12530 DUF3730: Protein of u 95.0 2.2 4.7E-05 37.2 15.8 182 59-286 8-214 (234)
147 KOG1293|consensus 95.0 0.55 1.2E-05 46.1 12.8 137 103-265 390-533 (678)
148 PF12074 DUF3554: Domain of un 94.9 1.6 3.6E-05 40.2 15.6 86 29-119 3-90 (339)
149 KOG1822|consensus 94.8 1.5 3.3E-05 48.2 16.5 224 43-266 867-1128(2067)
150 PF13251 DUF4042: Domain of un 94.8 0.15 3.3E-06 42.6 7.6 151 106-267 2-176 (182)
151 KOG1525|consensus 94.8 0.2 4.3E-06 53.5 10.0 137 88-227 257-406 (1266)
152 PF08506 Cse1: Cse1; InterPro 94.7 0.44 9.6E-06 44.6 11.4 136 13-151 210-368 (370)
153 PF10363 DUF2435: Protein of u 94.7 0.49 1.1E-05 34.9 9.4 83 199-286 5-88 (92)
154 COG5098 Chromosome condensatio 94.6 1.6 3.4E-05 43.6 14.9 108 199-316 301-417 (1128)
155 KOG1020|consensus 94.6 0.88 1.9E-05 48.8 13.9 128 128-286 815-942 (1692)
156 PF10363 DUF2435: Protein of u 94.5 0.19 4.1E-06 37.1 6.8 60 241-310 8-68 (92)
157 PLN03076 ARF guanine nucleotid 94.5 2.1 4.5E-05 47.8 17.3 257 23-286 1147-1467(1780)
158 KOG1822|consensus 94.4 0.96 2.1E-05 49.6 14.1 108 16-123 879-992 (2067)
159 KOG1525|consensus 94.4 0.68 1.5E-05 49.6 12.8 157 104-265 236-405 (1266)
160 KOG2213|consensus 94.3 3.3 7.1E-05 38.5 15.4 87 51-141 60-163 (460)
161 KOG0392|consensus 94.3 0.29 6.2E-06 51.4 9.6 139 130-288 78-221 (1549)
162 KOG1020|consensus 94.3 0.49 1.1E-05 50.6 11.4 144 11-156 813-958 (1692)
163 KOG1991|consensus 94.2 1.4 3.1E-05 45.3 14.1 173 85-286 405-600 (1010)
164 PF05804 KAP: Kinesin-associat 94.1 5.5 0.00012 40.5 18.1 135 18-155 255-396 (708)
165 KOG1293|consensus 94.0 4.3 9.3E-05 40.1 16.3 133 67-225 393-532 (678)
166 PF08389 Xpo1: Exportin 1-like 93.8 0.33 7.1E-06 38.5 7.5 123 27-152 2-147 (148)
167 KOG1993|consensus 93.8 1.2 2.6E-05 44.9 12.4 209 49-286 485-710 (978)
168 KOG1991|consensus 93.7 2 4.2E-05 44.3 14.1 159 100-285 369-554 (1010)
169 PF11865 DUF3385: Domain of un 93.5 0.76 1.6E-05 37.6 9.1 151 45-227 3-158 (160)
170 PF10521 DUF2454: Protein of u 93.4 0.8 1.7E-05 41.2 10.1 40 86-125 115-154 (282)
171 KOG0413|consensus 93.4 5.3 0.00012 41.4 16.3 182 53-264 473-684 (1529)
172 PF08506 Cse1: Cse1; InterPro 93.3 1.1 2.3E-05 42.0 10.9 139 104-260 225-370 (370)
173 PF11701 UNC45-central: Myosin 93.1 0.48 1E-05 38.6 7.4 141 94-260 8-154 (157)
174 KOG4413|consensus 92.9 4.2 9E-05 37.1 13.4 182 104-316 54-246 (524)
175 smart00567 EZ_HEAT E-Z type HE 92.8 0.12 2.5E-06 29.3 2.4 30 211-248 1-30 (30)
176 PF00514 Arm: Armadillo/beta-c 92.7 0.26 5.7E-06 30.1 4.2 30 196-225 11-40 (41)
177 KOG4535|consensus 92.6 0.3 6.5E-06 46.4 6.1 187 17-228 394-605 (728)
178 PF10274 ParcG: Parkin co-regu 92.6 1.2 2.6E-05 37.2 9.0 88 195-282 36-131 (183)
179 KOG0168|consensus 92.4 2.8 6E-05 42.7 12.7 192 67-289 146-349 (1051)
180 PF12765 Cohesin_HEAT: HEAT re 92.3 0.23 5.1E-06 30.8 3.5 25 235-259 17-41 (42)
181 PF11865 DUF3385: Domain of un 91.9 2.3 4.9E-05 34.8 9.9 72 196-267 85-159 (160)
182 PF12830 Nipped-B_C: Sister ch 91.7 3.5 7.6E-05 34.6 11.1 70 128-228 7-76 (187)
183 PF12054 DUF3535: Domain of un 91.4 11 0.00023 36.3 15.4 245 27-288 101-367 (441)
184 KOG2011|consensus 91.4 5.3 0.00012 41.9 13.9 81 204-284 294-378 (1048)
185 KOG2274|consensus 91.3 3.2 6.9E-05 42.6 11.8 73 194-267 87-159 (1005)
186 PF10521 DUF2454: Protein of u 91.1 7.1 0.00015 35.0 13.3 153 113-286 99-276 (282)
187 PF00514 Arm: Armadillo/beta-c 91.1 0.61 1.3E-05 28.4 4.5 30 235-264 11-40 (41)
188 PF03224 V-ATPase_H_N: V-ATPas 90.5 13 0.00029 33.7 15.9 66 91-157 107-178 (312)
189 cd03569 VHS_Hrs_Vps27p VHS dom 90.5 6.2 0.00013 31.5 11.0 84 196-279 40-128 (142)
190 KOG2160|consensus 90.4 5.2 0.00011 36.7 11.6 138 103-265 96-240 (342)
191 KOG2160|consensus 90.3 3.5 7.6E-05 37.8 10.4 99 199-307 126-231 (342)
192 KOG1992|consensus 90.3 12 0.00027 38.1 14.8 143 14-157 362-526 (960)
193 KOG2274|consensus 90.2 25 0.00055 36.4 20.0 133 8-141 443-587 (1005)
194 KOG1848|consensus 89.8 8.1 0.00018 41.6 13.5 107 195-311 995-1129(1610)
195 cd08050 TAF6 TATA Binding Prot 89.7 2.1 4.5E-05 39.7 8.7 133 17-156 182-338 (343)
196 PF03130 HEAT_PBS: PBS lyase H 89.7 0.2 4.4E-06 27.7 1.3 27 213-247 1-27 (27)
197 PF08389 Xpo1: Exportin 1-like 89.6 2.8 6.1E-05 33.0 8.5 63 196-260 81-148 (148)
198 PF13001 Ecm29: Proteasome sta 89.3 3.9 8.4E-05 40.0 10.7 68 197-264 414-487 (501)
199 PF10274 ParcG: Parkin co-regu 89.3 8.3 0.00018 32.2 11.1 77 196-272 79-171 (183)
200 PF08713 DNA_alkylation: DNA a 89.2 1.7 3.7E-05 36.9 7.4 66 89-158 119-184 (213)
201 cd03568 VHS_STAM VHS domain fa 89.2 7.6 0.00016 31.1 10.5 77 195-271 35-116 (144)
202 PF12830 Nipped-B_C: Sister ch 89.0 2.1 4.5E-05 35.9 7.6 68 196-265 7-74 (187)
203 PF08713 DNA_alkylation: DNA a 88.8 13 0.00028 31.4 12.6 67 196-266 119-185 (213)
204 PF07571 DUF1546: Protein of u 88.6 1.2 2.7E-05 32.7 5.2 71 140-241 17-89 (92)
205 cd08050 TAF6 TATA Binding Prot 88.5 4 8.8E-05 37.8 9.7 132 60-225 186-339 (343)
206 KOG2149|consensus 88.4 5.4 0.00012 37.2 10.2 112 15-127 60-178 (393)
207 PF03224 V-ATPase_H_N: V-ATPas 87.6 5.9 0.00013 36.1 10.2 131 130-288 107-252 (312)
208 KOG2973|consensus 87.3 4.3 9.2E-05 36.7 8.5 20 96-115 9-28 (353)
209 KOG2081|consensus 87.2 16 0.00035 35.6 12.9 87 67-157 368-456 (559)
210 PF11698 V-ATPase_H_C: V-ATPas 86.7 4.3 9.3E-05 31.4 7.3 69 196-264 42-114 (119)
211 smart00567 EZ_HEAT E-Z type HE 86.4 0.8 1.7E-05 25.7 2.5 29 250-286 1-29 (30)
212 KOG3036|consensus 86.3 3.2 7E-05 36.2 7.0 126 86-224 120-262 (293)
213 KOG1851|consensus 86.3 19 0.00042 39.4 13.9 162 42-232 1517-1684(1710)
214 KOG1837|consensus 86.1 1.6 3.4E-05 47.2 6.0 79 6-84 1533-1615(1621)
215 cd07064 AlkD_like_1 A new stru 85.1 20 0.00044 30.5 11.6 123 22-159 55-180 (208)
216 PF08167 RIX1: rRNA processing 84.5 14 0.00029 30.3 9.9 106 15-122 27-146 (165)
217 PF12765 Cohesin_HEAT: HEAT re 83.8 1.9 4E-05 26.7 3.4 26 195-220 16-41 (42)
218 cd03568 VHS_STAM VHS domain fa 83.8 15 0.00033 29.4 9.6 76 130-230 38-114 (144)
219 PF12074 DUF3554: Domain of un 83.5 36 0.00078 31.2 15.8 198 87-288 19-257 (339)
220 PF00790 VHS: VHS domain; Int 83.2 21 0.00045 28.3 10.2 77 196-272 41-125 (140)
221 smart00185 ARM Armadillo/beta- 83.1 2.3 5E-05 25.3 3.7 28 198-225 13-40 (41)
222 PF12054 DUF3535: Domain of un 82.8 6.1 0.00013 38.0 8.1 79 208-286 98-179 (441)
223 KOG2549|consensus 82.8 16 0.00035 35.6 10.7 163 63-263 219-420 (576)
224 cd06561 AlkD_like A new struct 82.7 9.2 0.0002 31.9 8.5 64 200-266 108-171 (197)
225 PF08167 RIX1: rRNA processing 82.2 26 0.00056 28.6 13.3 113 127-267 23-145 (165)
226 PF13251 DUF4042: Domain of un 82.2 1.9 4.2E-05 36.0 3.9 55 212-266 1-70 (182)
227 KOG1848|consensus 82.1 50 0.0011 36.0 14.6 222 23-265 852-1132(1610)
228 KOG2149|consensus 82.0 19 0.00041 33.7 10.6 89 196-284 98-191 (393)
229 KOG2213|consensus 80.6 6.9 0.00015 36.5 7.1 47 196-246 60-106 (460)
230 KOG2005|consensus 80.3 69 0.0015 32.3 14.0 58 235-306 639-696 (878)
231 PF14668 RICTOR_V: Rapamycin-i 79.7 4.9 0.00011 28.1 4.7 53 214-266 4-59 (73)
232 PF09324 DUF1981: Domain of un 79.5 15 0.00032 26.5 7.4 66 194-259 14-82 (86)
233 cd07064 AlkD_like_1 A new stru 79.4 38 0.00083 28.8 14.8 131 91-266 47-180 (208)
234 PF08064 UME: UME (NUC010) dom 78.8 25 0.00055 26.4 10.4 76 200-278 14-96 (107)
235 PF08623 TIP120: TATA-binding 78.5 7.2 0.00016 32.1 6.1 77 208-285 38-116 (169)
236 COG5537 IRR1 Cohesin [Cell div 78.3 27 0.00059 34.5 10.6 125 21-149 283-413 (740)
237 PF04078 Rcd1: Cell differenti 78.2 13 0.00028 32.9 7.9 73 86-158 91-168 (262)
238 smart00185 ARM Armadillo/beta- 78.2 4.3 9.3E-05 24.0 3.7 29 236-264 12-40 (41)
239 KOG2973|consensus 77.6 7.3 0.00016 35.2 6.2 65 199-266 5-72 (353)
240 KOG1837|consensus 77.6 27 0.00058 38.4 11.2 75 196-270 1540-1616(1621)
241 cd03565 VHS_Tom1 VHS domain fa 77.5 34 0.00074 27.2 10.8 76 196-271 37-121 (141)
242 PF11698 V-ATPase_H_C: V-ATPas 77.3 7.2 0.00016 30.2 5.4 65 237-311 44-112 (119)
243 cd03567 VHS_GGA VHS domain fam 77.0 35 0.00077 27.1 10.8 75 196-270 37-121 (139)
244 PF14664 RICTOR_N: Rapamycin-i 76.7 67 0.0014 30.1 13.7 70 194-263 105-174 (371)
245 KOG0803|consensus 76.6 97 0.0021 34.0 15.1 264 15-285 43-330 (1312)
246 KOG2549|consensus 76.5 15 0.00032 35.8 8.3 134 17-157 211-369 (576)
247 KOG2153|consensus 76.2 89 0.0019 31.3 17.8 67 198-265 461-527 (704)
248 cd03569 VHS_Hrs_Vps27p VHS dom 75.8 37 0.00081 27.0 9.4 77 130-231 42-119 (142)
249 smart00288 VHS Domain present 75.6 37 0.0008 26.6 9.9 76 195-270 35-116 (133)
250 KOG2011|consensus 75.3 32 0.00068 36.5 10.9 61 99-159 296-356 (1048)
251 cd03561 VHS VHS domain family; 75.3 38 0.00081 26.5 10.4 76 195-270 35-117 (133)
252 smart00288 VHS Domain present 74.9 34 0.00074 26.8 8.9 76 130-230 38-115 (133)
253 cd03561 VHS VHS domain family; 74.6 39 0.00085 26.4 9.4 77 130-231 38-117 (133)
254 KOG1048|consensus 74.5 81 0.0018 32.1 13.1 95 194-288 515-619 (717)
255 PF07539 DRIM: Down-regulated 74.2 15 0.00032 29.3 6.7 83 195-288 15-101 (141)
256 PF04118 Dopey_N: Dopey, N-ter 72.4 78 0.0017 28.9 14.2 171 29-224 71-252 (307)
257 PF03378 CAS_CSE1: CAS/CSE pro 72.2 95 0.0021 29.8 13.7 78 64-141 42-129 (435)
258 KOG0889|consensus 72.1 50 0.0011 39.5 12.1 73 89-161 983-1065(3550)
259 PF14868 DUF4487: Domain of un 72.1 11 0.00023 37.4 6.4 70 199-268 481-555 (559)
260 PLN03076 ARF guanine nucleotid 69.0 2.2E+02 0.0047 32.7 18.9 106 10-117 1182-1297(1780)
261 smart00802 UME Domain in UVSB 68.9 48 0.001 25.1 8.8 74 199-274 13-92 (107)
262 PF00790 VHS: VHS domain; Int 68.4 57 0.0012 25.7 9.9 77 130-231 43-123 (140)
263 PF11701 UNC45-central: Myosin 66.2 12 0.00025 30.4 4.6 128 67-223 21-156 (157)
264 KOG2199|consensus 65.9 96 0.0021 29.2 10.7 88 194-282 42-134 (462)
265 KOG1851|consensus 65.1 35 0.00076 37.6 8.7 71 195-265 1524-1598(1710)
266 PF08569 Mo25: Mo25-like; Int 63.0 1.2E+02 0.0027 28.0 11.1 106 99-228 173-285 (335)
267 cd03572 ENTH_epsin_related ENT 60.9 23 0.0005 27.5 5.1 37 88-124 36-72 (122)
268 PF06685 DUF1186: Protein of u 60.7 1.2E+02 0.0026 26.8 12.7 29 199-227 113-143 (249)
269 COG1698 Uncharacterized protei 60.3 37 0.00081 24.6 5.6 51 92-142 19-72 (93)
270 KOG4524|consensus 60.0 43 0.00093 35.0 8.0 98 128-249 802-902 (1014)
271 KOG2005|consensus 60.0 1.3E+02 0.0027 30.6 10.9 245 10-264 448-742 (878)
272 PF08623 TIP120: TATA-binding 59.8 10 0.00022 31.3 3.1 57 101-158 38-94 (169)
273 PF05536 Neurochondrin: Neuroc 59.8 1.3E+02 0.0027 29.9 11.3 160 52-233 98-268 (543)
274 PF03378 CAS_CSE1: CAS/CSE pro 59.6 1.7E+02 0.0037 28.1 15.3 125 25-149 42-176 (435)
275 PF01603 B56: Protein phosphat 59.0 1.7E+02 0.0036 27.9 15.5 208 89-315 132-369 (409)
276 COG5234 CIN1 Beta-tubulin fold 59.0 25 0.00055 35.5 6.1 144 15-159 248-417 (993)
277 cd03572 ENTH_epsin_related ENT 58.6 85 0.0018 24.4 8.5 36 129-164 38-73 (122)
278 PF14868 DUF4487: Domain of un 58.2 60 0.0013 32.2 8.6 59 164-228 496-554 (559)
279 PF08161 NUC173: NUC173 domain 57.7 1.2E+02 0.0025 25.7 10.0 14 124-137 112-125 (198)
280 COG5110 RPN1 26S proteasome re 57.2 2.1E+02 0.0045 28.5 16.7 66 227-306 632-697 (881)
281 cd06561 AlkD_like A new struct 57.0 1.1E+02 0.0024 25.2 14.7 55 195-254 139-194 (197)
282 KOG1992|consensus 56.8 2.5E+02 0.0054 29.2 18.2 124 24-154 16-155 (960)
283 PF08064 UME: UME (NUC010) dom 56.0 32 0.00069 25.9 5.1 59 67-128 31-92 (107)
284 cd03567 VHS_GGA VHS domain fam 55.7 1E+02 0.0022 24.5 9.3 73 133-230 42-120 (139)
285 COG5101 CRM1 Importin beta-rel 55.2 2.4E+02 0.0052 28.6 13.9 166 119-285 471-668 (1053)
286 KOG2081|consensus 54.7 2.2E+02 0.0049 28.0 18.6 128 105-267 367-497 (559)
287 COG5330 Uncharacterized protei 54.7 77 0.0017 29.5 8.1 63 200-262 10-73 (364)
288 KOG4500|consensus 54.0 2.1E+02 0.0046 27.5 13.8 106 198-315 316-430 (604)
289 COG4912 Predicted DNA alkylati 53.6 74 0.0016 27.4 7.3 69 195-266 116-184 (222)
290 KOG2021|consensus 53.5 2.8E+02 0.006 28.7 15.9 86 52-139 491-586 (980)
291 smart00802 UME Domain in UVSB 53.4 39 0.00085 25.5 5.2 73 54-128 13-92 (107)
292 COG1698 Uncharacterized protei 52.3 89 0.0019 22.7 7.7 66 196-261 16-86 (93)
293 COG5369 Uncharacterized conser 52.0 30 0.00065 33.9 5.2 111 91-226 432-545 (743)
294 PF12397 U3snoRNP10: U3 small 50.8 1.1E+02 0.0024 23.3 8.8 33 126-158 3-36 (121)
295 KOG0889|consensus 50.2 5.8E+02 0.012 31.5 17.8 269 15-285 986-1329(3550)
296 KOG2759|consensus 49.3 29 0.00062 32.8 4.6 64 236-309 366-433 (442)
297 KOG0891|consensus 48.1 1.6E+02 0.0035 34.6 10.8 90 62-154 492-590 (2341)
298 COG4912 Predicted DNA alkylati 47.5 71 0.0015 27.5 6.3 103 55-167 88-192 (222)
299 KOG0891|consensus 45.9 2.8E+02 0.006 32.8 12.1 70 196-265 647-719 (2341)
300 COG5656 SXM1 Importin, protein 43.7 3.9E+02 0.0085 27.7 13.3 90 196-285 459-549 (970)
301 COG5209 RCD1 Uncharacterized p 43.3 54 0.0012 28.5 4.9 72 87-158 142-218 (315)
302 KOG1993|consensus 42.1 4.2E+02 0.0092 27.6 14.4 173 91-289 489-669 (978)
303 cd00256 VATPase_H VATPase_H, r 41.7 64 0.0014 30.9 5.8 68 197-264 353-424 (429)
304 PF14664 RICTOR_N: Rapamycin-i 39.4 3.3E+02 0.0071 25.5 17.3 218 24-266 36-270 (371)
305 KOG2199|consensus 39.4 3.4E+02 0.0073 25.7 9.7 77 130-231 46-123 (462)
306 PF09450 DUF2019: Domain of un 39.1 67 0.0015 24.3 4.4 27 199-225 49-75 (106)
307 COG2733 Predicted membrane pro 38.8 3.4E+02 0.0075 25.6 19.6 35 235-269 300-334 (415)
308 PF14225 MOR2-PAG1_C: Cell mor 38.6 2.8E+02 0.0061 24.6 11.9 52 235-286 187-239 (262)
309 PF12612 TFCD_C: Tubulin foldi 38.5 2E+02 0.0043 24.0 7.8 26 195-222 68-93 (193)
310 PF05536 Neurochondrin: Neuroc 38.2 4.1E+02 0.0089 26.3 17.8 145 14-159 6-169 (543)
311 PF04286 DUF445: Protein of un 38.0 3.2E+02 0.0068 24.9 16.1 13 28-40 37-49 (367)
312 COG5330 Uncharacterized protei 37.8 1.1E+02 0.0024 28.5 6.4 65 15-79 9-75 (364)
313 cd00197 VHS_ENTH_ANTH VHS, ENT 37.2 1.8E+02 0.0038 21.8 9.1 69 195-263 35-113 (115)
314 KOG0904|consensus 36.3 3.2E+02 0.0069 28.8 9.8 83 142-244 566-654 (1076)
315 cd03565 VHS_Tom1 VHS domain fa 34.7 2.3E+02 0.005 22.4 9.3 67 140-231 50-120 (141)
316 COG5537 IRR1 Cohesin [Cell div 32.3 5.4E+02 0.012 26.0 11.5 163 95-285 280-450 (740)
317 PF08569 Mo25: Mo25-like; Int 31.9 4.2E+02 0.009 24.5 15.3 91 196-286 208-312 (335)
318 COG5110 RPN1 26S proteasome re 31.6 5.4E+02 0.012 25.7 10.3 30 197-226 676-705 (881)
319 KOG1789|consensus 31.4 4E+02 0.0087 29.1 9.6 149 74-249 1755-1911(2235)
320 KOG0803|consensus 31.3 7.8E+02 0.017 27.5 14.8 224 51-288 41-289 (1312)
321 PF01603 B56: Protein phosphat 30.7 4.7E+02 0.01 24.8 16.9 66 15-80 135-204 (409)
322 PF08767 CRM1_C: CRM1 C termin 29.7 4.3E+02 0.0094 24.1 14.9 92 196-288 116-227 (319)
323 PF08620 RPAP1_C: RPAP1-like, 29.3 1.7E+02 0.0038 20.4 4.9 39 7-45 33-71 (73)
324 PRK04330 hypothetical protein; 29.2 2.3E+02 0.0049 20.6 8.0 67 195-261 11-82 (88)
325 KOG1048|consensus 28.6 3.4E+02 0.0073 27.9 8.6 103 14-120 234-350 (717)
326 KOG2021|consensus 28.5 7E+02 0.015 26.0 16.3 54 209-264 205-259 (980)
327 PF08161 NUC173: NUC173 domain 28.2 3.7E+02 0.008 22.7 8.3 25 208-232 52-76 (198)
328 COG2733 Predicted membrane pro 27.8 5.3E+02 0.011 24.4 14.3 95 106-228 234-332 (415)
329 cd00256 VATPase_H VATPase_H, r 27.4 5.6E+02 0.012 24.6 18.6 113 34-157 55-172 (429)
330 KOG2229|consensus 27.4 6.1E+02 0.013 25.0 18.1 97 208-312 249-345 (616)
331 KOG0904|consensus 27.4 1E+02 0.0022 32.1 4.8 34 101-138 622-655 (1076)
332 PF04388 Hamartin: Hamartin pr 27.3 6.9E+02 0.015 25.6 14.0 150 14-176 5-161 (668)
333 KOG4524|consensus 26.5 4.1E+02 0.0089 28.2 8.8 93 196-288 802-902 (1014)
334 COG5656 SXM1 Importin, protein 26.5 7.5E+02 0.016 25.8 13.7 129 88-245 406-548 (970)
335 PF12397 U3snoRNP10: U3 small 26.4 2.9E+02 0.0062 20.9 9.2 70 196-267 5-76 (121)
336 KOG3036|consensus 25.1 4.9E+02 0.011 23.1 10.8 38 126-163 121-159 (293)
337 COG5095 TAF6 Transcription ini 23.3 5.8E+02 0.013 23.4 11.0 207 15-302 199-415 (450)
338 KOG1926|consensus 23.0 5.7E+02 0.012 27.6 9.2 69 195-264 72-140 (1129)
339 PF11841 DUF3361: Domain of un 23.0 2.6E+02 0.0056 22.8 5.6 71 103-173 73-146 (160)
340 PF07539 DRIM: Down-regulated 22.4 1.2E+02 0.0025 24.2 3.4 48 89-141 16-63 (141)
341 PF14225 MOR2-PAG1_C: Cell mor 22.4 5.5E+02 0.012 22.7 14.2 58 194-251 185-243 (262)
342 COG5369 Uncharacterized conser 22.3 5.2E+02 0.011 25.8 8.2 72 194-265 470-545 (743)
343 PF11791 Aconitase_B_N: Aconit 22.3 3.2E+02 0.007 22.1 5.9 31 199-229 96-126 (154)
344 PF14663 RasGEF_N_2: Rapamycin 22.2 2.1E+02 0.0046 21.7 4.8 28 15-42 10-37 (115)
345 PF08767 CRM1_C: CRM1 C termin 21.7 6.2E+02 0.013 23.1 13.4 37 194-230 162-198 (319)
346 COG5234 CIN1 Beta-tubulin fold 21.2 2.5E+02 0.0054 28.8 6.0 140 139-308 256-410 (993)
347 KOG3961|consensus 21.2 3.6E+02 0.0078 23.4 6.2 88 129-245 114-201 (262)
348 KOG2122|consensus 21.1 2.8E+02 0.0061 31.2 6.6 72 130-227 531-602 (2195)
349 KOG1926|consensus 21.0 1.1E+03 0.024 25.7 14.3 66 91-157 75-140 (1129)
350 PRK04330 hypothetical protein; 20.2 3.5E+02 0.0076 19.7 8.3 71 124-222 8-82 (88)
No 1
>KOG0211|consensus
Probab=99.92 E-value=5.7e-24 Score=208.68 Aligned_cols=283 Identities=49% Similarity=0.691 Sum_probs=258.6
Q ss_pred CCCCchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHHHHHHHHHHHcccccCcCcccch
Q psy14015 9 DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYV 88 (318)
Q Consensus 9 ~~~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~VR~~aa~~L~~l~~~~~~~~~~ 88 (318)
++++.||+.+++.+..++.+.|...++.+..++.++|++.++.+++|++.+.+.|+.+|...++.+++.+.+.+|++.+.
T Consensus 78 ~~~~~~ia~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~~~~dev~~~~a~~~~~~~~~v~~~~~~ 157 (759)
T KOG0211|consen 78 EDSLYPIAVLIDELSNTDIQLRLNSGRKLSNLALALGVERTRLELIPFLTEAEDDEDEVLLDLAEQLGTFLPDVGGPEYA 157 (759)
T ss_pred ccccccHHHHhhccCchhhhhhhhhhccccchhhhcccchhhhhhhhHHHHhccchhHHHHHHHHHhcccchhccchhHH
Confidence 34699999999999999999999999999999999999988999999999999667779999999999999999999999
Q ss_pred hccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccC-cchHHH
Q psy14015 89 HCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVT-AGVKAE 167 (318)
Q Consensus 89 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~-~~~~~~ 167 (318)
..++|.+..++.+++..||+++++++..++...+++...++++|++.++..++++..|.+++++++..+..+. ..++.+
T Consensus 158 ~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~e 237 (759)
T KOG0211|consen 158 HMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRE 237 (759)
T ss_pred HHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHH
Confidence 9999999999999999999999999999999999988888999999999999878899999999999999988 668999
Q ss_pred HHHHHHhhccCCCcccccchh----hcC-----ccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh-hhHhhH
Q psy14015 168 LRSHFRNLCQDDTPMQQGHVW----ECG-----SGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD-YLKTDI 237 (318)
Q Consensus 168 l~~~~~~l~~~~~~~vR~~v~----~~~-----~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~-~~~~~l 237 (318)
+...+.++|.|..|+||..+. ..+ ...++.++|.+.++..|+...||.+|..++..+...+..+ .....+
T Consensus 238 lr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~ 317 (759)
T KOG0211|consen 238 LRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSL 317 (759)
T ss_pred HHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhh
Confidence 999999999999999998432 111 2456788999999999999999999999999999999877 777889
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhcccccccc
Q psy14015 238 IPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHK 291 (318)
Q Consensus 238 lp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~ 291 (318)
.+.+.++.+|++|.||..++..+..+...+|++.....+.|....+++|..+.+
T Consensus 318 ~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~ 371 (759)
T KOG0211|consen 318 TESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEV 371 (759)
T ss_pred hHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhh
Confidence 999999999999999999999999999999997667788999999999944433
No 2
>KOG0211|consensus
Probab=99.81 E-value=3.6e-19 Score=175.06 Aligned_cols=285 Identities=16% Similarity=0.182 Sum_probs=224.4
Q ss_pred HHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcC----cccchhc
Q psy14015 16 AVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVG----GPEYVHC 90 (318)
Q Consensus 16 ~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~----~~~~~~~ 90 (318)
+.+....++..+.+|........++...+|++..+.++.|.+..++.|.++ +|.+++.....++..+. .+...+.
T Consensus 319 ~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ 398 (759)
T KOG0211|consen 319 ESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSS 398 (759)
T ss_pred HHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhh
Confidence 356677788899999999999999999999987888889999999999888 99999999998888776 3445566
Q ss_pred cchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCc----chHH
Q psy14015 91 LLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA----GVKA 166 (318)
Q Consensus 91 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~----~~~~ 166 (318)
++|.++.+..|.+..||.+.+..+..+...++.+.....++|.+...++|....||......+..+..-..+ -+..
T Consensus 399 ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~ 478 (759)
T KOG0211|consen 399 ILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSN 478 (759)
T ss_pred hhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhh
Confidence 889999999999999999999888888888888777778888888888888888888777433222111000 0112
Q ss_pred HHHHHHHhhccCCCcccccchh--------hcC-ccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhH
Q psy14015 167 ELRSHFRNLCQDDTPMQQGHVW--------ECG-SGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDI 237 (318)
Q Consensus 167 ~l~~~~~~l~~~~~~~vR~~v~--------~~~-~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~l 237 (318)
.....+.++..+....+|.++. .++ +.+.+.+-+....-+.|.+..+|++|+.++..++..+|.+|....+
T Consensus 479 slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~ 558 (759)
T KOG0211|consen 479 SLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEE 558 (759)
T ss_pred hhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHh
Confidence 2223333444443333333211 111 2345566677777788999999999999999999999999999999
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCCCCchhhHHhhhhh
Q psy14015 238 IPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISATT 310 (318)
Q Consensus 238 lp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~~ 310 (318)
+|.+.....+++|.+|.+.+.++..+++.+|++.+.+.++|.+..+.+| ..|+||+++++...
T Consensus 559 i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D----------~vanVR~nvak~L~ 621 (759)
T KOG0211|consen 559 IPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKD----------PVANVRINVAKHLP 621 (759)
T ss_pred hHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccC----------CchhhhhhHHHHHH
Confidence 9999999899999999999999999999999999999999999999999 99999999987543
No 3
>PRK09687 putative lyase; Provisional
Probab=99.79 E-value=6e-18 Score=151.24 Aligned_cols=247 Identities=16% Similarity=0.122 Sum_probs=187.9
Q ss_pred hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccc-hhcc
Q psy14015 14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEY-VHCL 91 (318)
Q Consensus 14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~-~~~l 91 (318)
.+..+++.|.+++..+|..++..|..+ |. ....+.+.++++|+++ +|..++..|+.+.. +.. ....
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~----~~----~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~----~~~~~~~a 91 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLR----GG----QDVFRLAIELCSSKNPIERDIGADILSQLGM----AKRCQDNV 91 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhc----Cc----chHHHHHHHHHhCCCHHHHHHHHHHHHhcCC----CccchHHH
Confidence 467888999999999999999999886 43 3467777788888777 99999999998743 211 2457
Q ss_pred chHHhhh-ccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHH
Q psy14015 92 LPPLESL-ATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRS 170 (318)
Q Consensus 92 lp~l~~l-~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~ 170 (318)
+|.|..+ .+|+++.||..|+.+|+.++..... .....++.+.....|++|.||..++..|+++- . .....
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~--~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~----~---~~ai~ 162 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCKKNPL--YSPKIVEQSQITAFDKSTNVRFAVAFALSVIN----D---EAAIP 162 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcccccccc--cchHHHHHHHHHhhCCCHHHHHHHHHHHhccC----C---HHHHH
Confidence 7888776 7899999999999999998643221 11225556667788999999999999998652 1 12234
Q ss_pred HHHhhccCCCcccccc-hhhcCc--cchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcC
Q psy14015 171 HFRNLCQDDTPMQQGH-VWECGS--GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQD 247 (318)
Q Consensus 171 ~~~~l~~~~~~~vR~~-v~~~~~--~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D 247 (318)
.+..+..|.++.||.. +..+|. .......+.+..+++|+++.||..|+.+||++.. ...+|.+.+.++|
T Consensus 163 ~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--------~~av~~Li~~L~~ 234 (280)
T PRK09687 163 LLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKD--------KRVLSVLIKELKK 234 (280)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCC--------hhHHHHHHHHHcC
Confidence 5556667888888874 445553 2356788999999999999999999999998653 4688888889998
Q ss_pred CcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhcc-ccccccccCCCCCCchhhHHhhhh
Q psy14015 248 EQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSV-QIVDHKFCPNNEFHPLELHVISAT 309 (318)
Q Consensus 248 ~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~-D~~~~~~~~~~~~~~Vr~~~i~~~ 309 (318)
+. +|..++.+++.+.. ...+|.|.++++ + +++.|+-.+++..
T Consensus 235 ~~--~~~~a~~ALg~ig~--------~~a~p~L~~l~~~~----------~d~~v~~~a~~a~ 277 (280)
T PRK09687 235 GT--VGDLIIEAAGELGD--------KTLLPVLDTLLYKF----------DDNEIITKAIDKL 277 (280)
T ss_pred Cc--hHHHHHHHHHhcCC--------HhHHHHHHHHHhhC----------CChhHHHHHHHHH
Confidence 87 67777888887773 357899999997 7 7888888887653
No 4
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.72 E-value=2.6e-16 Score=161.82 Aligned_cols=246 Identities=19% Similarity=0.133 Sum_probs=148.2
Q ss_pred hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccc
Q psy14015 14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLL 92 (318)
Q Consensus 14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~ll 92 (318)
.++.+++.|+|+++.+|..+++.|+++ ++ ...+|.|.++++|+++ ||..++..|..+...... .
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~----~~----~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-------~ 686 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTET----TP----PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-------A 686 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhh----cc----hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-------h
Confidence 357888999999999999999999986 33 2367788888888877 999999999877532211 1
Q ss_pred hHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccc---------cCcc
Q psy14015 93 PPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPR---------VTAG 163 (318)
Q Consensus 93 p~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~---------~~~~ 163 (318)
+.+...+.|+++.||..|+.+|..+...- .+.+..+++|+++.+|..|+..|+.+-.. -...
T Consensus 687 ~~L~~~L~~~d~~VR~~A~~aL~~~~~~~---------~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~ 757 (897)
T PRK13800 687 PALRDHLGSPDPVVRAAALDVLRALRAGD---------AALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENRE 757 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhccCC---------HHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHH
Confidence 34445556666777777777666553110 01122344455555555555554432100 0001
Q ss_pred hHHHHH--------------HHHHhhccCCCcccccc-hhhcCccch-HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHH
Q psy14015 164 VKAELR--------------SHFRNLCQDDTPMQQGH-VWECGSGVK-AELRSHFRNLCQDDTPMVRRAAAGKLGELAKV 227 (318)
Q Consensus 164 ~~~~l~--------------~~~~~l~~~~~~~vR~~-v~~~~~~~~-~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~ 227 (318)
+|..++ ..+..+.+|.++.||.. +..++.... ..+.+.+...++|++|.||..|+.+|+.+..
T Consensus 758 VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~- 836 (897)
T PRK13800 758 VRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA- 836 (897)
T ss_pred HHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-
Confidence 111111 22334455555666653 222332221 2334556677777777777777777776542
Q ss_pred hchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCCCCchhhHHhh
Q psy14015 228 VEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVIS 307 (318)
Q Consensus 228 ~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~ 307 (318)
+..++.+..+++|+++.||..++.+|+.+. ++ ....+.|..+++| ++++||..+++
T Consensus 837 -------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~~----~~a~~~L~~al~D----------~d~~Vr~~A~~ 892 (897)
T PRK13800 837 -------DVAVPALVEALTDPHLDVRKAAVLALTRWP---GD----PAARDALTTALTD----------SDADVRAYARR 892 (897)
T ss_pred -------cchHHHHHHHhcCCCHHHHHHHHHHHhccC---CC----HHHHHHHHHHHhC----------CCHHHHHHHHH
Confidence 335577777778888888888877777741 11 2245667777888 78888877765
Q ss_pred h
Q psy14015 308 A 308 (318)
Q Consensus 308 ~ 308 (318)
.
T Consensus 893 a 893 (897)
T PRK13800 893 A 893 (897)
T ss_pred H
Confidence 4
No 5
>PRK09687 putative lyase; Provisional
Probab=99.70 E-value=5.6e-16 Score=138.57 Aligned_cols=210 Identities=15% Similarity=0.076 Sum_probs=161.2
Q ss_pred hchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhh
Q psy14015 51 GELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAH 129 (318)
Q Consensus 51 ~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ 129 (318)
..-++.|..++.|++. ||..++..|+.+. . +.+++.+..++.|++..||..|+.+|..+...-.. ...
T Consensus 22 ~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~----~----~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~~ 90 (280)
T PRK09687 22 KLNDDELFRLLDDHNSLKRISSIRVLQLRG----G----QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---QDN 90 (280)
T ss_pred hccHHHHHHHHhCCCHHHHHHHHHHHHhcC----c----chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---hHH
Confidence 3335556666677776 9999999999774 2 44677888899999999999999999998753211 123
Q ss_pred HHHHHHHh-hcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccc-hhhcCccchHHHHHHHHHhhc
Q psy14015 130 FVPLVQRL-ASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGH-VWECGSGVKAELRSHFRNLCQ 207 (318)
Q Consensus 130 ilp~~~~l-~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~-v~~~~~~~~~~ll~~l~~l~~ 207 (318)
.+|.+..+ .+|+++.||.+|+..||.+...-... ...+.+.+.....|..+.||.. +..++.......++.+..+++
T Consensus 91 a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~ 169 (280)
T PRK09687 91 VFNILNNLALEDKSACVRASAINATGHRCKKNPLY-SPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLK 169 (280)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-chHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhc
Confidence 66777766 78999999999999999875332211 1233345556677778889985 455666666889999999999
Q ss_pred CCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccc
Q psy14015 208 DDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQ 286 (318)
Q Consensus 208 D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D 286 (318)
|+++.||..|+.+||.+.. + .....|.+..+++|+++.||..++.+++.+. ....+|.|+..|+|
T Consensus 170 d~~~~VR~~A~~aLg~~~~--~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~--------~~~av~~Li~~L~~ 234 (280)
T PRK09687 170 DPNGDVRNWAAFALNSNKY--D----NPDIREAFVAMLQDKNEEIRIEAIIGLALRK--------DKRVLSVLIKELKK 234 (280)
T ss_pred CCCHHHHHHHHHHHhcCCC--C----CHHHHHHHHHHhcCCChHHHHHHHHHHHccC--------ChhHHHHHHHHHcC
Confidence 9999999999999999821 1 1357888999999999999999999988754 23578999999998
No 6
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.68 E-value=9.1e-16 Score=157.82 Aligned_cols=217 Identities=15% Similarity=0.057 Sum_probs=143.1
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChH------------hHhhc-----------hhhhhhhhcCChHH-HHHH
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQE------------RTRGE-----------LIPFLTETIYDEDE-VLLA 70 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~------------~~~~~-----------llp~l~~l~~D~~~-VR~~ 70 (318)
++.+...|+|+++.+|..++..|.++....... ..+.. -.+.+.+.+.|+++ ||.+
T Consensus 654 ~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~ 733 (897)
T PRK13800 654 GPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIE 733 (897)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHH
Confidence 567778888999999999988888774221111 00000 01222334455444 5555
Q ss_pred HHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhh
Q psy14015 71 LAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSAC 150 (318)
Q Consensus 71 aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~ 150 (318)
++..|+.+. . .+.+..++.|++..||..++.+|..+...-. ..+|.+.++++|+++.+|.+|+
T Consensus 734 Av~aL~~~~----~-------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~------~~~~~L~~ll~D~d~~VR~aA~ 796 (897)
T PRK13800 734 AVRALVSVD----D-------VESVAGAATDENREVRIAVAKGLATLGAGGA------PAGDAVRALTGDPDPLVRAAAL 796 (897)
T ss_pred HHHHHhccc----C-------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc------hhHHHHHHHhcCCCHHHHHHHH
Confidence 555555431 1 1234455677777777777777766654311 1356677888998899999999
Q ss_pred hhhhhhccccCcchHHHHHHHHHhhccCCCcccccc-hhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhc
Q psy14015 151 GLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGH-VWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE 229 (318)
Q Consensus 151 ~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~-v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~ 229 (318)
..|+.+... . .+...+....+|.++.||.. +..++..-....++.+..+++|+++.||+.++.+|+.+. +
T Consensus 797 ~aLg~~g~~--~----~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~ 867 (897)
T PRK13800 797 AALAELGCP--P----DDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVEALTDPHLDVRKAAVLALTRWP---G 867 (897)
T ss_pred HHHHhcCCc--c----hhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHHHHHhcCCCHHHHHHHHHHHhccC---C
Confidence 988866321 1 11122344556777888974 444444444667899999999999999999999999972 1
Q ss_pred hhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHH
Q psy14015 230 VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACV 261 (318)
Q Consensus 230 ~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~ 261 (318)
. ....+.+..+++|++..||+.++.+|.
T Consensus 868 ~----~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 868 D----PAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred C----HHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 1 357888999999999999999999875
No 7
>KOG1240|consensus
Probab=99.61 E-value=1.7e-14 Score=143.66 Aligned_cols=238 Identities=16% Similarity=0.230 Sum_probs=181.9
Q ss_pred HHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcC------cccchh
Q psy14015 17 VLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVG------GPEYVH 89 (318)
Q Consensus 17 ~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~------~~~~~~ 89 (318)
+-+..++. .+.++++++-|.+.+..+..+.....++||+..+..|++. ||.+|.+.|.++...+. ..-+.+
T Consensus 429 s~IR~lk~--~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~e 506 (1431)
T KOG1240|consen 429 SCIRALKT--IQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPE 506 (1431)
T ss_pred HHHHhhhc--chhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHh
Confidence 33444444 3456699999999998888888889999999999999998 99999999988766543 245678
Q ss_pred ccchHHhhhccC-chhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHH-----hhcCCCchhhhhhhhhhhhhccccCcc
Q psy14015 90 CLLPPLESLATV-EETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQR-----LASGDWFTSRTSACGLFSVCYPRVTAG 163 (318)
Q Consensus 90 ~llp~l~~l~~d-~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~-----l~~d~~~~vR~~a~~~l~~~~~~~~~~ 163 (318)
+|+|-|..|+.| ....||.+-+.+|..++..... ++..... +.++++-. .+... ..+.
T Consensus 507 YlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r------Fle~~q~~~~~g~~n~~nse---t~~~~-------~~~~ 570 (1431)
T KOG1240|consen 507 YLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR------FLELTQELRQAGMLNDPNSE---TAPEQ-------NYNT 570 (1431)
T ss_pred hhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH------HHHHHHHHHhcccccCcccc---ccccc-------ccch
Confidence 999999999999 6788999999999999865321 2222222 23443211 00000 0000
Q ss_pred hHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHH
Q psy14015 164 VKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVN 243 (318)
Q Consensus 164 ~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ 243 (318)
... .....+-..+..|+.|+.+.||++..++++.++.+||++...+.|++.+..
T Consensus 571 ~~~--------------------------~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiT 624 (1431)
T KOG1240|consen 571 ELQ--------------------------ALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLIT 624 (1431)
T ss_pred HHH--------------------------HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHH
Confidence 011 122344567788999999999999999999999999998877789999999
Q ss_pred hhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCCCCchhhHHhhh
Q psy14015 244 LAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISA 308 (318)
Q Consensus 244 ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~ 308 (318)
.++|.+|..|.++...|..++-++|...+.++++|.+.+.|.| .++-|=.+++.+
T Consensus 625 fLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD----------~EE~Viv~aL~~ 679 (1431)
T KOG1240|consen 625 FLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTD----------GEEAVIVSALGS 679 (1431)
T ss_pred HhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccC----------cchhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999 666666555544
No 8
>KOG2171|consensus
Probab=99.54 E-value=1.2e-12 Score=130.84 Aligned_cols=269 Identities=17% Similarity=0.111 Sum_probs=186.6
Q ss_pred HHHHHhcCcc-HHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCccc--chhccc
Q psy14015 17 VLIDELKNED-VQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPE--YVHCLL 92 (318)
Q Consensus 17 ~l~~~l~~~~-~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~--~~~~ll 92 (318)
++++..+++. +.+|.+.++..+++++...++ .|.++++++.+..++.++ .|..+...|..+...+|... +...+.
T Consensus 83 ~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~ 161 (1075)
T KOG2171|consen 83 SLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLL 161 (1075)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHH
Confidence 4555565554 679999999999999998888 899999999999999888 99999999999988888632 345788
Q ss_pred hHHhhhccCchhHHHHHHHHHHHHHHhhCC--hhH--HhhhHHHHHHHh----hcCCCchhhhhhhhhhhhhccccC---
Q psy14015 93 PPLESLATVEETVVRDKAVESLRLISAQHS--PHD--LEAHFVPLVQRL----ASGDWFTSRTSACGLFSVCYPRVT--- 161 (318)
Q Consensus 93 p~l~~l~~d~~~~VR~~a~~~l~~l~~~~~--~~~--~~~~ilp~~~~l----~~d~~~~vR~~a~~~l~~~~~~~~--- 161 (318)
+++.+-+.|++..||.+|+.++..++..++ ++. ....++|.+..- .++++...-..+.+.|..+....+
T Consensus 162 ~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l 241 (1075)
T KOG2171|consen 162 RLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLL 241 (1075)
T ss_pred HHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHH
Confidence 999999999988899999999999999885 222 223366644332 222222222223233222222222
Q ss_pred ---------------------cchHHHHHHHHHhhccCCCccccc-------------chh-h-----------------
Q psy14015 162 ---------------------AGVKAELRSHFRNLCQDDTPMQQG-------------HVW-E----------------- 189 (318)
Q Consensus 162 ---------------------~~~~~~l~~~~~~l~~~~~~~vR~-------------~v~-~----------------- 189 (318)
+..|..+.+.+..+.+..+.+.|. ++. .
T Consensus 242 ~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~ 321 (1075)
T KOG2171|consen 242 RPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDD 321 (1075)
T ss_pred HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccccccccc
Confidence 222332223232222222112221 000 0
Q ss_pred ------------------cC-ccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh--hhHhhHHHHHHHhhcCC
Q psy14015 190 ------------------CG-SGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD--YLKTDIIPMFVNLAQDE 248 (318)
Q Consensus 190 ------------------~~-~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~--~~~~~llp~l~~ll~D~ 248 (318)
++ +..-.-+++.+-.+++.++|.-|+++..+|+.+++..+.. ...+.++|.+.+.++||
T Consensus 322 ~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dp 401 (1075)
T KOG2171|consen 322 EETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDP 401 (1075)
T ss_pred ccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCC
Confidence 00 0111235566677889999999999999999999865432 23578999999999999
Q ss_pred cHHHHHHHHHHHHHHHhhCChhh---hhHhhHHHHHHhccc
Q psy14015 249 QDSVRLLAVEACVSIASLLSQSD---VEQLVMPTLRQCSVQ 286 (318)
Q Consensus 249 ~~~VR~aa~~~l~~l~~~l~~~~---~~~~l~p~l~~ll~D 286 (318)
++.||.+|+.++++++..|.++. +.+.+.|.+...+.|
T Consensus 402 hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~ 442 (1075)
T KOG2171|consen 402 HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDS 442 (1075)
T ss_pred CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcc
Confidence 99999999999999999998864 334588888888887
No 9
>KOG2023|consensus
Probab=99.46 E-value=3.1e-12 Score=121.28 Aligned_cols=280 Identities=18% Similarity=0.119 Sum_probs=196.7
Q ss_pred CCCCchHHHHHHHhcCccHHHHHHHHHhHHHHHHh---------------------------------------hChHhH
Q psy14015 9 DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALA---------------------------------------LGQERT 49 (318)
Q Consensus 9 ~~~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~---------------------------------------lg~~~~ 49 (318)
++.|-.+..+++.-+|+|..+|..+...+-..-.. ++++ .
T Consensus 9 e~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~-~ 87 (885)
T KOG2023|consen 9 EQGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSE-V 87 (885)
T ss_pred HHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChH-H
Confidence 34566799999999999999999999988877210 1111 1
Q ss_pred hhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh----
Q psy14015 50 RGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH---- 124 (318)
Q Consensus 50 ~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---- 124 (318)
...+...+..-+-|.++ +|...-..+..++..-| -..+..++|.+.+++..++...-+.|..+|.++++-....
T Consensus 88 ~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~-~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~ 166 (885)
T KOG2023|consen 88 LDYIKSECLHGLGDASPLIRATVGIVITTIASTGG-LQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSD 166 (885)
T ss_pred HHHHHHHHHhhccCchHHHHhhhhheeeeeecccc-cccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhh
Confidence 11222222233345555 66665555555554333 3456789999999999999999999999999998765431
Q ss_pred ---HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcch---HHHHHHHHHhhccCCCcccccchh-------h--
Q psy14015 125 ---DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGV---KAELRSHFRNLCQDDTPMQQGHVW-------E-- 189 (318)
Q Consensus 125 ---~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~---~~~l~~~~~~l~~~~~~~vR~~v~-------~-- 189 (318)
.-.+.++|.+.++.+.+++.+|.-|...+..++..-++.. -..+.+.+-.++.|..|+||+.|. +
T Consensus 167 ~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr 246 (885)
T KOG2023|consen 167 VLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVR 246 (885)
T ss_pred cccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhc
Confidence 2235689999999999999999999888776655444432 234455666788999999997211 0
Q ss_pred ---c---------------------------------Cc--c-------chHHHHHHHHHh----------hc-------
Q psy14015 190 ---C---------------------------------GS--G-------VKAELRSHFRNL----------CQ------- 207 (318)
Q Consensus 190 ---~---------------------------------~~--~-------~~~~ll~~l~~l----------~~------- 207 (318)
+ ++ . .-..++|.+++- +.
T Consensus 247 ~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~ 326 (885)
T KOG2023|consen 247 PDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDES 326 (885)
T ss_pred HHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCcccccc
Confidence 0 00 0 112355555322 22
Q ss_pred -----------------------------CC----------CHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCC
Q psy14015 208 -----------------------------DD----------TPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDE 248 (318)
Q Consensus 208 -----------------------------D~----------~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~ 248 (318)
|+ +|+.|+..|.+|..++.++|.+. ...++|.++..+..+
T Consensus 327 vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~el-L~~l~PlLk~~L~~~ 405 (885)
T KOG2023|consen 327 VPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDEL-LPILLPLLKEHLSSE 405 (885)
T ss_pred CCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHH-HHHHHHHHHHHcCcc
Confidence 11 39999999999999999999764 688999999999999
Q ss_pred cHHHHHHHHHHHHHHHhhCChh--hhhHhhHHHHHHhcccccccc
Q psy14015 249 QDSVRLLAVEACVSIASLLSQS--DVEQLVMPTLRQCSVQIVDHK 291 (318)
Q Consensus 249 ~~~VR~aa~~~l~~l~~~l~~~--~~~~~l~p~l~~ll~D~~~~~ 291 (318)
.|.||.+.+-++|.+++.+.+- .....++|.++++|.|+-..|
T Consensus 406 ~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplV 450 (885)
T KOG2023|consen 406 EWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLV 450 (885)
T ss_pred hhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccce
Confidence 9999999999999999877553 334569999999999944333
No 10
>KOG2171|consensus
Probab=99.45 E-value=7.4e-12 Score=125.36 Aligned_cols=285 Identities=18% Similarity=0.187 Sum_probs=184.8
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHh--HhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcC--------
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQER--TRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVG-------- 83 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~--~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~-------- 83 (318)
++.++...+|+++..|..+..-|..+...+|... ....+++.+.+.+.|.+. ||.+++++++.++....
T Consensus 120 l~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~ 199 (1075)
T KOG2171|consen 120 LQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDK 199 (1075)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHH
Confidence 5677788889999999999999999887777542 234788888888888665 99999999888775441
Q ss_pred -------------------cccch----------------------hccchHHhhhcc--CchhHHHHHHHHHHHHHHhh
Q psy14015 84 -------------------GPEYV----------------------HCLLPPLESLAT--VEETVVRDKAVESLRLISAQ 120 (318)
Q Consensus 84 -------------------~~~~~----------------------~~llp~l~~l~~--d~~~~VR~~a~~~l~~l~~~ 120 (318)
..+.. ..++.+...... +-++.+|..|++.+..+++.
T Consensus 200 ~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~ 279 (1075)
T KOG2171|consen 200 FRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEY 279 (1075)
T ss_pred HHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh
Confidence 00000 111111122222 22568888888888887776
Q ss_pred CCh-----hHHhhhHHHHHHHhhcC----------------CCchhhhhhhhhhhhhccccCcc-hHHHHHHHHHhhccC
Q psy14015 121 HSP-----HDLEAHFVPLVQRLASG----------------DWFTSRTSACGLFSVCYPRVTAG-VKAELRSHFRNLCQD 178 (318)
Q Consensus 121 ~~~-----~~~~~~ilp~~~~l~~d----------------~~~~vR~~a~~~l~~~~~~~~~~-~~~~l~~~~~~l~~~ 178 (318)
-+. ..+...++|.+..+..+ +....-..|...+-.+.-+++.. +-.-+.+.+..++..
T Consensus 280 Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S 359 (1075)
T KOG2171|consen 280 APAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQS 359 (1075)
T ss_pred hHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcC
Confidence 211 23555566666655321 00113334444444444444432 334444555555555
Q ss_pred CCcccccc-hh---hcCc-------cchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh---hhHhhHHHHHHHh
Q psy14015 179 DTPMQQGH-VW---ECGS-------GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD---YLKTDIIPMFVNL 244 (318)
Q Consensus 179 ~~~~vR~~-v~---~~~~-------~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~---~~~~~llp~l~~l 244 (318)
..+.-|.. +. .+++ ..-.++++..+..++|+.++||.+|+.++|.++..+.++ ...+.+.|.+...
T Consensus 360 ~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ 439 (1075)
T KOG2171|consen 360 TEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIAL 439 (1075)
T ss_pred CCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHH
Confidence 55544432 11 1111 123678899999999999999999999999999988765 3455677788888
Q ss_pred hcCCc-HHHHHHHHHHHHHHHhhCChhhhhHh---hHH-HHHHhccccccccccCCCCCCchhhHHhhhh
Q psy14015 245 AQDEQ-DSVRLLAVEACVSIASLLSQSDVEQL---VMP-TLRQCSVQIVDHKFCPNNEFHPLELHVISAT 309 (318)
Q Consensus 245 l~D~~-~~VR~aa~~~l~~l~~~l~~~~~~~~---l~p-~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~ 309 (318)
+.|+. ..|...++.++.++++.+.++....+ ++. .+..++.. ..+.|+-.++.++
T Consensus 440 ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~----------~~~~v~e~vvtaI 499 (1075)
T KOG2171|consen 440 LDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQS----------SKPYVQEQAVTAI 499 (1075)
T ss_pred hcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcC----------CchhHHHHHHHHH
Confidence 88885 49999999999999999988776655 333 33345555 6788888877543
No 11
>KOG1240|consensus
Probab=99.41 E-value=3.6e-12 Score=127.40 Aligned_cols=241 Identities=17% Similarity=0.168 Sum_probs=186.9
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHh---hChH---hHhhchhhhhhhhcCC-hHH-HHHHHHHHHcccccCc----
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALA---LGQE---RTRGELIPFLTETIYD-EDE-VLLALAEQLGTFTPNV---- 82 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~---lg~~---~~~~~llp~l~~l~~D-~~~-VR~~aa~~L~~l~~~~---- 82 (318)
++-++-.++|+...||..|+..|.++..- +.+. -+.++++|-|..++.| +.. ||.+-|..|+.||+..
T Consensus 464 lPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFl 543 (1431)
T KOG1240|consen 464 LPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFL 543 (1431)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHH
Confidence 44566778999999999999999999644 2222 2678999999999999 555 9999999999988621
Q ss_pred ---------C---c-----------c----cchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHH
Q psy14015 83 ---------G---G-----------P----EYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQ 135 (318)
Q Consensus 83 ---------~---~-----------~----~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~ 135 (318)
| . + ...+.+-.....|+.|+++.||.+-+++++.++-.++++.....+++.+.
T Consensus 544 e~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLi 623 (1431)
T KOG1240|consen 544 ELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLI 623 (1431)
T ss_pred HHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHH
Confidence 1 0 0 01122334567889999999999999999999999999888888999999
Q ss_pred HhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHH
Q psy14015 136 RLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRR 215 (318)
Q Consensus 136 ~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~ 215 (318)
.+++|.+|+.|.+--+.+.-+...++|. -..++++|.+.+.++|..+.|=.
T Consensus 624 TfLNDkDw~LR~aFfdsI~gvsi~VG~r-----------------------------s~seyllPLl~Q~ltD~EE~Viv 674 (1431)
T KOG1240|consen 624 TFLNDKDWRLRGAFFDSIVGVSIFVGWR-----------------------------SVSEYLLPLLQQGLTDGEEAVIV 674 (1431)
T ss_pred HHhcCccHHHHHHHHhhccceEEEEeee-----------------------------eHHHHHHHHHHHhccCcchhhHH
Confidence 9999999999977655544333333331 14578999999999999999999
Q ss_pred HHHHhhHHHHHH--hchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhcc
Q psy14015 216 AAAGKLGELAKV--VEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSV 285 (318)
Q Consensus 216 ~aa~~L~~l~~~--~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~ 285 (318)
.|..+|.-+++. +.. ...-+++..+.-++-.|+.+||++++..|..++..++..++.-.+.|.+.+.+.
T Consensus 675 ~aL~~ls~Lik~~ll~K-~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 675 SALGSLSILIKLGLLRK-PAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE 745 (1431)
T ss_pred HHHHHHHHHHHhcccch-HHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence 999999888863 222 233556777778889999999999999999999999988776566665554444
No 12
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.33 E-value=2.1e-11 Score=119.00 Aligned_cols=281 Identities=19% Similarity=0.170 Sum_probs=188.3
Q ss_pred CCCCCCCchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCc
Q psy14015 6 SAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG 84 (318)
Q Consensus 6 ~~~~~~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~ 84 (318)
..|+..+.-+..+.+.++++|+.+|-.|++.++.++ .++ ..+.+.|.+.+++.|+.+ ||+.|+..+.++.+. .
T Consensus 72 ~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~-~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~--~ 145 (526)
T PF01602_consen 72 EDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR---TPE-MAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRK--D 145 (526)
T ss_dssp TSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH----SHH-HHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--C
T ss_pred cchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc---ccc-hhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc--C
Confidence 344445666888899999999999999999999975 444 678899999999999988 999999999988764 2
Q ss_pred ccchhc-cchHHhhhccCchhHHHHHHHHHHHHHHhhCChh---HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhcccc
Q psy14015 85 PEYVHC-LLPPLESLATVEETVVRDKAVESLRLISAQHSPH---DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRV 160 (318)
Q Consensus 85 ~~~~~~-llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~ 160 (318)
++..+. +.+.+..++.|++..|+..|+..+..+ ..+++ .....+...+.++..++++-.+..+..++..+...-
T Consensus 146 p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~ 223 (526)
T PF01602_consen 146 PDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPME 223 (526)
T ss_dssp HCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSS
T ss_pred HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCC
Confidence 334344 789999999999999999999999999 33333 233445556666667777667777777777654432
Q ss_pred CcchH-HHHHHHHHhhccCCCcccccchh----hcCc--cchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhh
Q psy14015 161 TAGVK-AELRSHFRNLCQDDTPMQQGHVW----ECGS--GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYL 233 (318)
Q Consensus 161 ~~~~~-~~l~~~~~~l~~~~~~~vR~~v~----~~~~--~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~ 233 (318)
..... ..+.+.+..+.+...+.|+-.+. .+.+ ......++.+.++++++++++|..+..++..++... ++.+
T Consensus 224 ~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~-~~~v 302 (526)
T PF01602_consen 224 PEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN-PPAV 302 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC-HHHH
T ss_pred hhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc-chhh
Confidence 22211 23334444333333333332111 1111 234667888999999999999999999999988654 2222
Q ss_pred HhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCC-CCchhhHHhhhhh
Q psy14015 234 KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNE-FHPLELHVISATT 310 (318)
Q Consensus 234 ~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~-~~~Vr~~~i~~~~ 310 (318)
. .....+..+..|++..+|..++..+..++. +.....+++.+...+.+ . ++++|..+++++.
T Consensus 303 ~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~----~~n~~~Il~eL~~~l~~----------~~d~~~~~~~i~~I~ 365 (526)
T PF01602_consen 303 F-NQSLILFFLLYDDDPSIRKKALDLLYKLAN----ESNVKEILDELLKYLSE----------LSDPDFRRELIKAIG 365 (526)
T ss_dssp G-THHHHHHHHHCSSSHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH----------C--HHHHHHHHHHHH
T ss_pred h-hhhhhhheecCCCChhHHHHHHHHHhhccc----ccchhhHHHHHHHHHHh----------ccchhhhhhHHHHHH
Confidence 2 333344455557788888888777666662 33344577777777754 3 5567777766554
No 13
>KOG1243|consensus
Probab=99.23 E-value=5.4e-11 Score=114.20 Aligned_cols=245 Identities=17% Similarity=0.183 Sum_probs=175.9
Q ss_pred CchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHHHHHHHHHHHcccccCcCcccchhcc
Q psy14015 12 LYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCL 91 (318)
Q Consensus 12 l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~VR~~aa~~L~~l~~~~~~~~~~~~l 91 (318)
+..+-.+++.++..+...|....+.|.+....+..+-....++|.+...+.-.+.. .....-|-.+++.+....+.+.+
T Consensus 253 fvd~~~fLeel~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~a~-~~~ltpl~k~~k~ld~~eyq~~i 331 (690)
T KOG1243|consen 253 FVDTLLFLEELRLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGDAA-SDFLTPLFKLGKDLDEEEYQVRI 331 (690)
T ss_pred HHHHHHHHHhcccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccccc-hhhhhHHHHhhhhccccccccch
Confidence 33456678889999999999999999998878888877889999998665443311 11112222344445556688889
Q ss_pred chHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHH
Q psy14015 92 LPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSH 171 (318)
Q Consensus 92 lp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~ 171 (318)
.|.+..|.+.++..||..-+..+..+..+++++.+...++|.+...+.|.+..+|..++..+..++..++...
T Consensus 332 ~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~------- 404 (690)
T KOG1243|consen 332 IPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRN------- 404 (690)
T ss_pred hhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhh-------
Confidence 9999999999999999999999999999999999999999999999999999999999888888777777541
Q ss_pred HHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHH
Q psy14015 172 FRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDS 251 (318)
Q Consensus 172 ~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~ 251 (318)
...+++..|..+-.|+...+|-+...++|+++..+.+......+...|.+.++||-.-
T Consensus 405 ----------------------Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~p 462 (690)
T KOG1243|consen 405 ----------------------LNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVP 462 (690)
T ss_pred ----------------------hcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCC
Confidence 2344556666555566666666666666666655443332223444555566666666
Q ss_pred HHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccc
Q psy14015 252 VRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQ 286 (318)
Q Consensus 252 VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D 286 (318)
-|.+...++....+.+....+...|+|.+..+..|
T Consensus 463 aR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd 497 (690)
T KOG1243|consen 463 ARKAGVLALAATQEYFDQSEVANKILPSLVPLTVD 497 (690)
T ss_pred chhhhhHHHhhcccccchhhhhhhccccccccccC
Confidence 66666666666666666666666666666666666
No 14
>KOG1242|consensus
Probab=99.23 E-value=1.1e-09 Score=104.09 Aligned_cols=254 Identities=16% Similarity=0.178 Sum_probs=180.9
Q ss_pred HHHHHhcCccHHHHHHHHHhHHHHHHhhChHhH-hhchhhhhhhhcCChHH--HHHHHHHHHcccccCcCcccchhccch
Q psy14015 17 VLIDELKNEDVQLRLNSIKKLSTIALALGQERT-RGELIPFLTETIYDEDE--VLLALAEQLGTFTPNVGGPEYVHCLLP 93 (318)
Q Consensus 17 ~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~-~~~llp~l~~l~~D~~~--VR~~aa~~L~~l~~~~~~~~~~~~llp 93 (318)
.+.+.+.......|..++..+...-.-.|-+.. ...++..+.+...|.+. .|..+.-.+......+|. .+..+++|
T Consensus 138 ~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~-~~EPyiv~ 216 (569)
T KOG1242|consen 138 LLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGP-PFEPYIVP 216 (569)
T ss_pred HHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCC-CCCchHHh
Confidence 444555566666777777777666544443332 33566677777788655 555555555555566663 44556665
Q ss_pred HHhhh---ccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHH
Q psy14015 94 PLESL---ATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRS 170 (318)
Q Consensus 94 ~l~~l---~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~ 170 (318)
++-.+ ..|....||.+|..+...+...++...+...+.+.+..+..+ .|+...++++++|.+....+...-
T Consensus 217 ~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs----- 290 (569)
T KOG1242|consen 217 ILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLS----- 290 (569)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHH-----
Confidence 55444 568899999999999999999999887777666666667666 899999999999855433222111
Q ss_pred HHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch--------------------
Q psy14015 171 HFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV-------------------- 230 (318)
Q Consensus 171 ~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~-------------------- 230 (318)
..-.+++|.+.+-+.|..++||+++..++-+++.++..
T Consensus 291 ----------------------~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~ 348 (569)
T KOG1242|consen 291 ----------------------LCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCY 348 (569)
T ss_pred ----------------------HHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccc
Confidence 12367788888888899999999988888888875521
Q ss_pred ------------------hhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhC-Chhh---hhHhhHHHHHHhccccc
Q psy14015 231 ------------------DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLL-SQSD---VEQLVMPTLRQCSVQIV 288 (318)
Q Consensus 231 ------------------~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l-~~~~---~~~~l~p~l~~ll~D~~ 288 (318)
......++|.+.+.+.+.+...++.++..+++++..+ .+.. +...|+|.+...+.|
T Consensus 349 ~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d-- 426 (569)
T KOG1242|consen 349 TPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDD-- 426 (569)
T ss_pred hHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcC--
Confidence 1224568888888888888888888999999999888 3332 345688999999999
Q ss_pred cccccCCCCCCchhhHHhhhh
Q psy14015 289 DHKFCPNNEFHPLELHVISAT 309 (318)
Q Consensus 289 ~~~~~~~~~~~~Vr~~~i~~~ 309 (318)
..|+||--..++.
T Consensus 427 --------~~PEvR~vaarAL 439 (569)
T KOG1242|consen 427 --------AVPEVRAVAARAL 439 (569)
T ss_pred --------CChhHHHHHHHHH
Confidence 8999998887765
No 15
>KOG2023|consensus
Probab=99.19 E-value=4.9e-10 Score=106.65 Aligned_cols=236 Identities=19% Similarity=0.223 Sum_probs=162.2
Q ss_pred HHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhH---hhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcc----cc
Q psy14015 16 AVLIDELKNEDVQLRLNSIKKLSTIALALGQERT---RGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGP----EY 87 (318)
Q Consensus 16 ~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~---~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~----~~ 87 (318)
+.+...-+|+++.+|...++.|.-+... -++.. ...++.|+....+|.+| |-..|++-+..+++.--.. .+
T Consensus 218 e~lFalanD~~~eVRk~vC~alv~Llev-r~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~ 296 (885)
T KOG2023|consen 218 EILFALANDEDPEVRKNVCRALVFLLEV-RPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPY 296 (885)
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHh-cHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHH
Confidence 3344445799999999999999988644 22222 23567777788889777 9999998888777531100 01
Q ss_pred hhccchHHhh----------hcc------------------------------------Cc----------hhHHHHHHH
Q psy14015 88 VHCLLPPLES----------LAT------------------------------------VE----------ETVVRDKAV 111 (318)
Q Consensus 88 ~~~llp~l~~----------l~~------------------------------------d~----------~~~VR~~a~ 111 (318)
...++|++.+ |++ |+ +++.|.-++
T Consensus 297 l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSA 376 (885)
T KOG2023|consen 297 LDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSA 376 (885)
T ss_pred HHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccH
Confidence 1223333211 111 01 157888888
Q ss_pred HHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcC
Q psy14015 112 ESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECG 191 (318)
Q Consensus 112 ~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~ 191 (318)
.++..+++.++.+ +..+++|++++.+..+.|.+|.+++-.+|.+..+.-+-.-
T Consensus 377 AaLDVLanvf~~e-lL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~-------------------------- 429 (885)
T KOG2023|consen 377 AALDVLANVFGDE-LLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFV-------------------------- 429 (885)
T ss_pred HHHHHHHHhhHHH-HHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcc--------------------------
Confidence 8898898888764 5667999999988889999999999999877544322111
Q ss_pred ccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHh---hcCCcHHHHHHHHHHHHHHHhhCC
Q psy14015 192 SGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNL---AQDEQDSVRLLAVEACVSIASLLS 268 (318)
Q Consensus 192 ~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l---l~D~~~~VR~aa~~~l~~l~~~l~ 268 (318)
..-.+++|.+++++.|..+.||...+..|+.++..+-.+...+.+.|.+..+ +-|.+..|+.+++.++.-+-+--|
T Consensus 430 -p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~ 508 (885)
T KOG2023|consen 430 -PHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAG 508 (885)
T ss_pred -cchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcc
Confidence 1225789999999999999999999999999998765443334455655554 459999999999998877764433
Q ss_pred hhhhhHhhHHHHHHhcc
Q psy14015 269 QSDVEQLVMPTLRQCSV 285 (318)
Q Consensus 269 ~~~~~~~l~p~l~~ll~ 285 (318)
+.++|.+...|+
T Consensus 509 -----~eLVp~l~~IL~ 520 (885)
T KOG2023|consen 509 -----EELVPYLEYILD 520 (885)
T ss_pred -----chhHHHHHHHHH
Confidence 334554444443
No 16
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=99.14 E-value=2.2e-09 Score=98.93 Aligned_cols=184 Identities=29% Similarity=0.372 Sum_probs=124.6
Q ss_pred hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccc
Q psy14015 14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLL 92 (318)
Q Consensus 14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~ll 92 (318)
-+..+.+.+.++++.+|..++..++.+. . .+.+|.+..++.|.++ ||..++..|+.+. .+. -+
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~----~----~~av~~l~~~l~d~~~~vr~~a~~aLg~~~----~~~----a~ 107 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELG----S----EEAVPLLRELLSDEDPRVRDAAADALGELG----DPE----AV 107 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhc----h----HHHHHHHHHHhcCCCHHHHHHHHHHHHccC----Chh----HH
Confidence 4667778888888999999998877752 2 3467888888888777 9999999888663 222 33
Q ss_pred hHHhhhcc-CchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCC------------chhhhhhhhhhhhhccc
Q psy14015 93 PPLESLAT-VEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDW------------FTSRTSACGLFSVCYPR 159 (318)
Q Consensus 93 p~l~~l~~-d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~------------~~vR~~a~~~l~~~~~~ 159 (318)
|.+..++. |++..||..|..+|..+...- .+.|++ .+++|+. +.+|..++..++.+
T Consensus 108 ~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-------a~~~l~-~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~--- 176 (335)
T COG1413 108 PPLVELLENDENEGVRAAAARALGKLGDER-------ALDPLL-EALQDEDSGSAAAALDAALLDVRAAAAEALGEL--- 176 (335)
T ss_pred HHHHHHHHcCCcHhHHHHHHHHHHhcCchh-------hhHHHH-HHhccchhhhhhhhccchHHHHHHHHHHHHHHc---
Confidence 34444333 889999999999988886542 133333 3334433 23455554444422
Q ss_pred cCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHH
Q psy14015 160 VTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIP 239 (318)
Q Consensus 160 ~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp 239 (318)
......+.+..++.|+...||..++.+++.++... ..+.+
T Consensus 177 ----------------------------------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~ 216 (335)
T COG1413 177 ----------------------------------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAAD 216 (335)
T ss_pred ----------------------------------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHH
Confidence 22445677778888888888888888888777521 24667
Q ss_pred HHHHhhcCCcHHHHHHHHHHHHHHH
Q psy14015 240 MFVNLAQDEQDSVRLLAVEACVSIA 264 (318)
Q Consensus 240 ~l~~ll~D~~~~VR~aa~~~l~~l~ 264 (318)
.|...+.|+++.||..++.+++...
T Consensus 217 ~l~~~~~~~~~~vr~~~~~~l~~~~ 241 (335)
T COG1413 217 LLVKALSDESLEVRKAALLALGEIG 241 (335)
T ss_pred HHHHHhcCCCHHHHHHHHHHhcccC
Confidence 7888888888888888877766544
No 17
>KOG1242|consensus
Probab=99.10 E-value=7.9e-09 Score=98.27 Aligned_cols=239 Identities=15% Similarity=0.181 Sum_probs=175.9
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCc--ccchhcc
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG--PEYVHCL 91 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~--~~~~~~l 91 (318)
++.++....|....+|..+......+...+.+... +.++|-+..-+.+..| -..++++.++-++..-.. ..+.+.+
T Consensus 218 lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV-K~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~i 296 (569)
T KOG1242|consen 218 LPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV-KLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDL 296 (569)
T ss_pred HHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh-hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHh
Confidence 56777888889999999999999999888887744 4455555444444488 778888888866542211 3456779
Q ss_pred chHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhh-hhccccCcchHHHHHH
Q psy14015 92 LPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFS-VCYPRVTAGVKAELRS 170 (318)
Q Consensus 92 lp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~-~~~~~~~~~~~~~l~~ 170 (318)
+|.+.+-+.|..+.||.++.+++..++......++.. ++|.+..-..|+.-.+..+.-.+.. .++..+..
T Consensus 297 iP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~-~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~-------- 367 (569)
T KOG1242|consen 297 IPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQK-IIPTLLDALADPSCYTPECLDSLGATTFVAEVDA-------- 367 (569)
T ss_pred hHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHH-HHHHHHHHhcCcccchHHHHHhhcceeeeeeecc--------
Confidence 9999999999999999999999999999887665444 7777777778886443333222111 12222211
Q ss_pred HHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhc-hhh---hHhhHHHHHHHhhc
Q psy14015 171 HFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE-VDY---LKTDIIPMFVNLAQ 246 (318)
Q Consensus 171 ~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~-~~~---~~~~llp~l~~ll~ 246 (318)
....-++|.+.+-+.+.+...++.++..++.++.-.. +.+ +...++|-++..+.
T Consensus 368 ----------------------psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~ 425 (569)
T KOG1242|consen 368 ----------------------PSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLD 425 (569)
T ss_pred ----------------------hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhc
Confidence 1335578888888888888888888888888887763 332 35678888888889
Q ss_pred CCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccc
Q psy14015 247 DEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQ 286 (318)
Q Consensus 247 D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D 286 (318)
|+.++||..++.+++.+.+-.|...+ ..++|.+...+++
T Consensus 426 d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e~~~~ 464 (569)
T KOG1242|consen 426 DAVPEVRAVAARALGALLERLGEVSF-DDLIPELSETLTS 464 (569)
T ss_pred CCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHHhhcc
Confidence 99999999999999888888887766 7788888888876
No 18
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.07 E-value=4e-09 Score=91.86 Aligned_cols=193 Identities=17% Similarity=0.186 Sum_probs=128.7
Q ss_pred CCchHHHHH-HHhcCccHHHHHHHHHhHHHHHHhhC----hHhHhh---chhhhhhhhcCChHH-HHHHHHHHHcccccC
Q psy14015 11 SLYPIAVLI-DELKNEDVQLRLNSIKKLSTIALALG----QERTRG---ELIPFLTETIYDEDE-VLLALAEQLGTFTPN 81 (318)
Q Consensus 11 ~l~~i~~l~-~~l~~~~~~~R~~~~~~L~~ia~~lg----~~~~~~---~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~ 81 (318)
.+.++...+ +...+.+|..|.+++..|..+...-. +..+.. .+++.+...+.|... |-+.++..+..++..
T Consensus 4 ~~~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~ 83 (228)
T PF12348_consen 4 EFEEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQ 83 (228)
T ss_dssp --GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 344433333 33468899999999999999976531 121222 333566667777666 889999999999887
Q ss_pred cCccc--chhccchHHhhhccCchhHHHHHHHHHHHHHHhhCC-hhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhcc
Q psy14015 82 VGGPE--YVHCLLPPLESLATVEETVVRDKAVESLRLISAQHS-PHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYP 158 (318)
Q Consensus 82 ~~~~~--~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~-~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~ 158 (318)
+|... +...++|.+...+.|....||..|..++..+++..+ .. ..+.+.+....+++++.+|..++..+..++.
T Consensus 84 l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~---~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~ 160 (228)
T PF12348_consen 84 LGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSP---KILLEILSQGLKSKNPQVREECAEWLAIILE 160 (228)
T ss_dssp HGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHT
T ss_pred HhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 77642 346688999999999999999999999999999887 22 2237777888899999999999998887766
Q ss_pred ccCc---chHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh
Q psy14015 159 RVTA---GVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD 231 (318)
Q Consensus 159 ~~~~---~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~ 231 (318)
..+. ..... ...+.+.+.+.+.++|.+++||.++-.++..+...+|..
T Consensus 161 ~~~~~~~~l~~~-------------------------~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 161 KWGSDSSVLQKS-------------------------AFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp T-----GGG--H-------------------------HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred HccchHhhhccc-------------------------chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 5551 11100 122678899999999999999999999999999888753
No 19
>KOG2259|consensus
Probab=99.06 E-value=1.5e-09 Score=103.21 Aligned_cols=236 Identities=17% Similarity=0.141 Sum_probs=164.9
Q ss_pred hchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh------
Q psy14015 51 GELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP------ 123 (318)
Q Consensus 51 ~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~------ 123 (318)
+.+..-+..+..|.+. ||..|++.|-.+.+ +-...+.++.....+++|+++.||.+|+..+...++..+.
T Consensus 197 ~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e---g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 197 EHAARGLIYLEHDQDFRVRTHAVEGLLALSE---GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHhhcc---cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 3444446678888777 99999999888866 2234456778888899999999999999999999988722
Q ss_pred --hHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcc-hHHHHHHHHHh-hccCCCcccccc-hh-----hcCcc
Q psy14015 124 --HDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG-VKAELRSHFRN-LCQDDTPMQQGH-VW-----ECGSG 193 (318)
Q Consensus 124 --~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~-~~~~l~~~~~~-l~~~~~~~vR~~-v~-----~~~~~ 193 (318)
..........+++...|-+|.||.-|++.||.+-. ++++ ..+++...... +-+..+..-|.| .. ..|+.
T Consensus 274 ~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~-vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~ 352 (823)
T KOG2259|consen 274 EEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQ-VSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKE 352 (823)
T ss_pred hhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHH-hHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcc
Confidence 23444577788899999999999999999996532 2322 22333222211 111111111111 00 01110
Q ss_pred ------------chHHHH-----HHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHH
Q psy14015 194 ------------VKAELR-----SHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLA 256 (318)
Q Consensus 194 ------------~~~~ll-----~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa 256 (318)
....++ ..|..-+.|+-.+||++|..+++.++.. ...+...-+.++..+++|+...||..+
T Consensus 353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s--sP~FA~~aldfLvDMfNDE~~~VRL~a 430 (823)
T KOG2259|consen 353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS--SPGFAVRALDFLVDMFNDEIEVVRLKA 430 (823)
T ss_pred ccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC--CCCcHHHHHHHHHHHhccHHHHHHHHH
Confidence 111233 5677888999999999999999999873 233456788899999999999999999
Q ss_pred HHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCCCCchhhHH
Q psy14015 257 VEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHV 305 (318)
Q Consensus 257 ~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~ 305 (318)
..++..++..+. ..+..++.++..|.| ..++||.++
T Consensus 431 i~aL~~Is~~l~---i~eeql~~il~~L~D----------~s~dvRe~l 466 (823)
T KOG2259|consen 431 IFALTMISVHLA---IREEQLRQILESLED----------RSVDVREAL 466 (823)
T ss_pred HHHHHHHHHHhe---ecHHHHHHHHHHHHh----------cCHHHHHHH
Confidence 999999997642 234568899999999 777777654
No 20
>PTZ00429 beta-adaptin; Provisional
Probab=99.03 E-value=2.3e-08 Score=100.06 Aligned_cols=113 Identities=16% Similarity=0.154 Sum_probs=91.8
Q ss_pred CCCCCCCCchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcC
Q psy14015 5 DSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVG 83 (318)
Q Consensus 5 ~~~~~~~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~ 83 (318)
+..||..+.-+..+.+.++|+|+.+|-.+++.++.+. .....+.+++.+.+.+.|.++ ||++|+-.+.++-..-.
T Consensus 97 ~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir----~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p 172 (746)
T PTZ00429 97 RLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIR----VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM 172 (746)
T ss_pred ccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC----cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc
Confidence 4578888899999999999999999999999998863 233677888999999999888 99999999888754222
Q ss_pred cccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhC
Q psy14015 84 GPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQH 121 (318)
Q Consensus 84 ~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~ 121 (318)
.-.....+.+.+..++.|.+..|...|+.+|..+.+..
T Consensus 173 elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~ 210 (746)
T PTZ00429 173 QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYG 210 (746)
T ss_pred ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhC
Confidence 11112346788989999999999999999999997654
No 21
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.02 E-value=2.5e-08 Score=107.43 Aligned_cols=254 Identities=14% Similarity=0.105 Sum_probs=187.2
Q ss_pred hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChH--h-H-hhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccch
Q psy14015 14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQE--R-T-RGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYV 88 (318)
Q Consensus 14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~--~-~-~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~ 88 (318)
-|+.+.+.|++.+..+|..++..|+.++.. +++ . . ....+|.|.+++++.+. ++..++..|..+... +.+.
T Consensus 489 aIP~LV~LL~s~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~-~d~~-- 564 (2102)
T PLN03200 489 GIPPLVQLLETGSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRT-ADAA-- 564 (2102)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-cchh--
Confidence 367888889899999999999999998753 211 1 1 23567888888877666 999999999988652 2221
Q ss_pred hccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHh------hhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCc
Q psy14015 89 HCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLE------AHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA 162 (318)
Q Consensus 89 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~------~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~ 162 (318)
.++.+..++..+++.++..++..+..+.+....++.. +..+|.+.+|+++++..++..|+..+..++..-.+
T Consensus 565 --~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d 642 (2102)
T PLN03200 565 --TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQD 642 (2102)
T ss_pred --HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChH
Confidence 3345556666677888888888888887765543312 24788889999988889999998888776543221
Q ss_pred chHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh----hHhhHH
Q psy14015 163 GVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY----LKTDII 238 (318)
Q Consensus 163 ~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~----~~~~ll 238 (318)
.... ......+|++..++++.+.++|+.++.+|+.+......+. +....+
T Consensus 643 -~~~a-------------------------vv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV 696 (2102)
T PLN03200 643 -LCES-------------------------LATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAI 696 (2102)
T ss_pred -HHHH-------------------------HHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCH
Confidence 1111 1235568999999999999999999999999996433332 234588
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHHHHhhCChh--hhhHhhHHHHHHhccccccccccCCCCCCchhhHHhhhh
Q psy14015 239 PMFVNLAQDEQDSVRLLAVEACVSIASLLSQS--DVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISAT 309 (318)
Q Consensus 239 p~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~--~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~ 309 (318)
|.+..++++++..++..++.++..++..-... ......+|.+..++.+ -.+++|-+++...
T Consensus 697 ~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~----------G~~~~k~~Aa~AL 759 (2102)
T PLN03200 697 KPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLRE----------GTLEGKRNAARAL 759 (2102)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHh----------CChHHHHHHHHHH
Confidence 99999999999999999999999999754222 2334578999999999 8888888887654
No 22
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=99.02 E-value=6.5e-09 Score=95.83 Aligned_cols=179 Identities=26% Similarity=0.242 Sum_probs=134.7
Q ss_pred chhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhH
Q psy14015 52 ELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHF 130 (318)
Q Consensus 52 ~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i 130 (318)
...+.+.+++.|.++ +|..++..++.+. ....+|.+..++.|.+..||..|+.+++.+... + .
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~--------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~---~-----a 106 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG--------SEEAVPLLRELLSDEDPRVRDAAADALGELGDP---E-----A 106 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc--------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh---h-----H
Confidence 356777788888766 9999999988663 244788999999999999999999976666532 1 3
Q ss_pred HHHHHHhh-cCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcC-
Q psy14015 131 VPLVQRLA-SGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQD- 208 (318)
Q Consensus 131 lp~~~~l~-~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D- 208 (318)
+|.+.+++ +|+++.+|..++..|+++-. +..+..++..++|
T Consensus 107 ~~~li~~l~~d~~~~vR~~aa~aL~~~~~-------------------------------------~~a~~~l~~~l~~~ 149 (335)
T COG1413 107 VPPLVELLENDENEGVRAAAARALGKLGD-------------------------------------ERALDPLLEALQDE 149 (335)
T ss_pred HHHHHHHHHcCCcHhHHHHHHHHHHhcCc-------------------------------------hhhhHHHHHHhccc
Confidence 33344433 48999999999998885522 1123334444444
Q ss_pred -----------CCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhH
Q psy14015 209 -----------DTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVM 277 (318)
Q Consensus 209 -----------~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~ 277 (318)
..+.+|..++..++.+.. ....+.+..++.|+...||.+++.+++.+.... ..+.
T Consensus 150 ~~~~a~~~~~~~~~~~r~~a~~~l~~~~~--------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~ 215 (335)
T COG1413 150 DSGSAAAALDAALLDVRAAAAEALGELGD--------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAA 215 (335)
T ss_pred hhhhhhhhccchHHHHHHHHHHHHHHcCC--------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHH
Confidence 335899999999998875 457788999999999999999999999888532 4677
Q ss_pred HHHHHhccccccccccCCCCCCchhhHHhh
Q psy14015 278 PTLRQCSVQIVDHKFCPNNEFHPLELHVIS 307 (318)
Q Consensus 278 p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~ 307 (318)
+.+...+.| +.++||...+.
T Consensus 216 ~~l~~~~~~----------~~~~vr~~~~~ 235 (335)
T COG1413 216 DLLVKALSD----------ESLEVRKAALL 235 (335)
T ss_pred HHHHHHhcC----------CCHHHHHHHHH
Confidence 889999999 77777777764
No 23
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=99.00 E-value=2.1e-08 Score=94.11 Aligned_cols=204 Identities=17% Similarity=0.128 Sum_probs=135.5
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccch
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLP 93 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp 93 (318)
+..+++.|.+.+..+|..+++.|+++ +.. ...+.+..+++++++ ||.++...++.... + -.+
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i----~~~----~a~~~L~~~L~~~~p~vR~aal~al~~r~~-----~----~~~ 150 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWL----GGR----QAEPWLEPLLAASEPPGRAIGLAALGAHRH-----D----PGP 150 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcC----Cch----HHHHHHHHHhcCCChHHHHHHHHHHHhhcc-----C----hHH
Confidence 67778888888888888888888875 333 244556666677666 88887777765321 1 234
Q ss_pred HHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHH
Q psy14015 94 PLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFR 173 (318)
Q Consensus 94 ~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~ 173 (318)
.+..+++|++..||..|+.+++.+... ..+|.+.....|.+..||..|+..++.+-.. .....+.
T Consensus 151 ~L~~~L~d~d~~Vra~A~raLG~l~~~--------~a~~~L~~al~d~~~~VR~aA~~al~~lG~~-------~A~~~l~ 215 (410)
T TIGR02270 151 ALEAALTHEDALVRAAALRALGELPRR--------LSESTLRLYLRDSDPEVRFAALEAGLLAGSR-------LAWGVCR 215 (410)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhccc--------cchHHHHHHHcCCCHHHHHHHHHHHHHcCCH-------hHHHHHH
Confidence 566667788888999988888887643 2555566778888888998888777644211 0111111
Q ss_pred hhccCCCcccccc---hhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcH
Q psy14015 174 NLCQDDTPMQQGH---VWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQD 250 (318)
Q Consensus 174 ~l~~~~~~~vR~~---v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~ 250 (318)
.+....++-++.. ....+ -....++.+..+++|+. ||..++.++|.++. ...+|.+...+.|+.
T Consensus 216 ~~~~~~g~~~~~~l~~~lal~--~~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~--------p~av~~L~~~l~d~~- 282 (410)
T TIGR02270 216 RFQVLEGGPHRQRLLVLLAVA--GGPDAQAWLRELLQAAA--TRREALRAVGLVGD--------VEAAPWCLEAMREPP- 282 (410)
T ss_pred HHHhccCccHHHHHHHHHHhC--CchhHHHHHHHHhcChh--hHHHHHHHHHHcCC--------cchHHHHHHHhcCcH-
Confidence 2111222111110 11111 12467888999999876 99999999998865 458888889998887
Q ss_pred HHHHHHHHHHHHHH
Q psy14015 251 SVRLLAVEACVSIA 264 (318)
Q Consensus 251 ~VR~aa~~~l~~l~ 264 (318)
+|+.+.+++..+.
T Consensus 283 -~aR~A~eA~~~It 295 (410)
T TIGR02270 283 -WARLAGEAFSLIT 295 (410)
T ss_pred -HHHHHHHHHHHhh
Confidence 8898888887776
No 24
>KOG0166|consensus
Probab=98.98 E-value=4.6e-08 Score=92.54 Aligned_cols=242 Identities=17% Similarity=0.182 Sum_probs=178.5
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChH----hHhhchhhhhhhhcCChH--HHHHHHHHHHcccccCcCc--c-
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQE----RTRGELIPFLTETIYDED--EVLLALAEQLGTFTPNVGG--P- 85 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~----~~~~~llp~l~~l~~D~~--~VR~~aa~~L~~l~~~~~~--~- 85 (318)
++.++..+.+++..+|..++..|+.|+-. |+. -.....++-|..++..+. ...+.++..|..+++.-.+ +
T Consensus 154 vp~fi~Ll~s~~~~v~eQavWALgNIagd-s~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~ 232 (514)
T KOG0166|consen 154 VPIFIQLLSSPSADVREQAVWALGNIAGD-SPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPF 232 (514)
T ss_pred hHHHHHHhcCCcHHHHHHHHHHHhccccC-ChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcH
Confidence 66789999999999999999999999743 221 112223344444444433 3888999999999874321 1
Q ss_pred cchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh---HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCc
Q psy14015 86 EYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH---DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA 162 (318)
Q Consensus 86 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~ 162 (318)
+....++|.+..++.++|..|..-|.-++.++....++. .+..-++|.+..++..++..++.-|...+|.+..+-..
T Consensus 233 ~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~ 312 (514)
T KOG0166|consen 233 DVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDE 312 (514)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHH
Confidence 345679999999999999999999999999998776552 12234889999999988888888888888876554322
Q ss_pred chHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhc-CCCHHHHHHHHHhhHHHHHHhchh-----hhHhh
Q psy14015 163 GVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ-DDTPMVRRAAAGKLGELAKVVEVD-----YLKTD 236 (318)
Q Consensus 163 ~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~-D~~~~VR~~aa~~L~~l~~~~~~~-----~~~~~ 236 (318)
. .+.+ ....++|.|..++. .+...+|+.|+..++.|+. |.. .+...
T Consensus 313 Q-Tq~v-------------------------i~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA--G~~~qiqaVida~ 364 (514)
T KOG0166|consen 313 Q-TQVV-------------------------INSGALPVLSNLLSSSPKESIKKEACWTISNITA--GNQEQIQAVIDAN 364 (514)
T ss_pred H-HHHH-------------------------HhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc--CCHHHHHHHHHcc
Confidence 1 1111 22456899999988 6778899999999999986 432 12345
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhh----hHhhHHHHHHhcc
Q psy14015 237 IIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV----EQLVMPTLRQCSV 285 (318)
Q Consensus 237 llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~----~~~l~p~l~~ll~ 285 (318)
++|.+.++++..+...|+.|+.+|.+++..-.++.. ..-+++.++.+|.
T Consensus 365 l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~ 417 (514)
T KOG0166|consen 365 LIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLT 417 (514)
T ss_pred cHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhccc
Confidence 999999999999999999999999998866555432 2347788888884
No 25
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.98 E-value=9.7e-08 Score=93.24 Aligned_cols=273 Identities=14% Similarity=0.118 Sum_probs=190.4
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccch
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLP 93 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp 93 (318)
+..+...+++.++.++.++++.+..+.. .......+++.+.+++.+.++ +|..+...|..++..- +........
T Consensus 233 i~~l~~~l~s~~~~V~~e~~~~i~~l~~---~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v~~~~~ 307 (526)
T PF01602_consen 233 IEPLLNLLQSSSPSVVYEAIRLIIKLSP---SPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAVFNQSL 307 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSS---SHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHHGTHHH
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhhc---chHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhhhhhhh
Confidence 5556667778888888888888886532 222456778888888887777 9999999999887632 112222333
Q ss_pred HHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcC-CCchhhhhhhhhhhhhccccCcchHHHHHHHH
Q psy14015 94 PLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASG-DWFTSRTSACGLFSVCYPRVTAGVKAELRSHF 172 (318)
Q Consensus 94 ~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d-~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~ 172 (318)
.+..+..|++..||..+++.+..+++.-+-+ .+++.+.+.+.+ ++..+|..++..++.++...+. ...+..+.+
T Consensus 308 ~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~----~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~-~~~~~v~~l 382 (526)
T PF01602_consen 308 ILFFLLYDDDPSIRKKALDLLYKLANESNVK----EILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP-DAEWYVDTL 382 (526)
T ss_dssp HHHHHHCSSSHHHHHHHHHHHHHH--HHHHH----HHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS-SHHHHHHHH
T ss_pred hhheecCCCChhHHHHHHHHHhhcccccchh----hHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc-hHHHHHHHH
Confidence 3444555888999999999988888643332 255556555533 3566888888888877665533 234444555
Q ss_pred HhhccCCCcccccchh-------hcCccchHHHHHHHHHhhcC-CCHHHHHHHHHhhHHHHHHhch-hhhHhhHHHHHHH
Q psy14015 173 RNLCQDDTPMQQGHVW-------ECGSGVKAELRSHFRNLCQD-DTPMVRRAAAGKLGELAKVVEV-DYLKTDIIPMFVN 243 (318)
Q Consensus 173 ~~l~~~~~~~vR~~v~-------~~~~~~~~~ll~~l~~l~~D-~~~~VR~~aa~~L~~l~~~~~~-~~~~~~llp~l~~ 243 (318)
.++....++.+...++ .-.+...+..+..+.+++.+ .++.++..+++.+|+.+...+. + ...+++..+..
T Consensus 383 ~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~-~~~~~~~~l~~ 461 (526)
T PF01602_consen 383 LKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLEDISSPEALAAAIWILGEYGELIENTE-SAPDILRSLIE 461 (526)
T ss_dssp HHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTT-HHHHHHHHHHH
T ss_pred HHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccc-cHHHHHHHHHH
Confidence 5655554444433211 11234556778888888776 6689999999999999998765 3 45678888888
Q ss_pred hhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhcc--ccccccccCCCCCCchhhHHhhh
Q psy14015 244 LAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSV--QIVDHKFCPNNEFHPLELHVISA 308 (318)
Q Consensus 244 ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~--D~~~~~~~~~~~~~~Vr~~~i~~ 308 (318)
...+.+..||..+..++..+....+.....+.+.+.+.++.+ + .+++||..+..-
T Consensus 462 ~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s----------~~~evr~Ra~~y 518 (526)
T PF01602_consen 462 NFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATEDS----------SDPEVRDRAREY 518 (526)
T ss_dssp HHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-----------SSHHHHHHHHHH
T ss_pred hhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCC----------CCHHHHHHHHHH
Confidence 888899999999999999999888776666789999999999 8 899999887743
No 26
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.97 E-value=3.7e-08 Score=92.50 Aligned_cols=200 Identities=17% Similarity=0.058 Sum_probs=122.8
Q ss_pred HHHHHHHh-cCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccc
Q psy14015 15 IAVLIDEL-KNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLL 92 (318)
Q Consensus 15 i~~l~~~l-~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~ll 92 (318)
++.++..+ .++++.+|..++..+.... + ...+..+.+.+.|.++ ||.+++++|+.+. . ....
T Consensus 56 ~~~L~~aL~~d~~~ev~~~aa~al~~~~---~-----~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~----~----~~a~ 119 (410)
T TIGR02270 56 TELLVSALAEADEPGRVACAALALLAQE---D-----ALDLRSVLAVLQAGPEGLCAGIQAALGWLG----G----RQAE 119 (410)
T ss_pred HHHHHHHHhhCCChhHHHHHHHHHhccC---C-----hHHHHHHHHHhcCCCHHHHHHHHHHHhcCC----c----hHHH
Confidence 44555666 3555666555444443210 1 1125666677777666 8888888888653 2 2244
Q ss_pred hHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHH
Q psy14015 93 PPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHF 172 (318)
Q Consensus 93 p~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~ 172 (318)
+.+..+++++++.||..++.++...... -.+.+..+++|+++.+|..|+..+|++-.
T Consensus 120 ~~L~~~L~~~~p~vR~aal~al~~r~~~---------~~~~L~~~L~d~d~~Vra~A~raLG~l~~-------------- 176 (410)
T TIGR02270 120 PWLEPLLAASEPPGRAIGLAALGAHRHD---------PGPALEAALTHEDALVRAAALRALGELPR-------------- 176 (410)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhhccC---------hHHHHHHHhcCCCHHHHHHHHHHHHhhcc--------------
Confidence 5666667778888888877666552211 23345556678888888888888775421
Q ss_pred HhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHH---------h---chhh-------h
Q psy14015 173 RNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKV---------V---EVDY-------L 233 (318)
Q Consensus 173 ~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~---------~---~~~~-------~ 233 (318)
....|.+...+.|+++.||..++.+++.++.. . |... .
T Consensus 177 -----------------------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~A~~~l~~~~~~~g~~~~~~l~~~l 233 (410)
T TIGR02270 177 -----------------------RLSESTLRLYLRDSDPEVRFAALEAGLLAGSRLAWGVCRRFQVLEGGPHRQRLLVLL 233 (410)
T ss_pred -----------------------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHhccCccHHHHHHHHH
Confidence 23355566667777777777777777665320 0 1000 0
Q ss_pred ----HhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccc
Q psy14015 234 ----KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQ 286 (318)
Q Consensus 234 ----~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D 286 (318)
....++.+..+++|+. ||..++.+++.+.. ...+|.++.+++|
T Consensus 234 al~~~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~--------p~av~~L~~~l~d 280 (410)
T TIGR02270 234 AVAGGPDAQAWLRELLQAAA--TRREALRAVGLVGD--------VEAAPWCLEAMRE 280 (410)
T ss_pred HhCCchhHHHHHHHHhcChh--hHHHHHHHHHHcCC--------cchHHHHHHHhcC
Confidence 1256677777888876 88888888776662 3467788888887
No 27
>KOG1243|consensus
Probab=98.94 E-value=4.2e-09 Score=101.41 Aligned_cols=195 Identities=18% Similarity=0.243 Sum_probs=170.6
Q ss_pred HhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhH
Q psy14015 47 ERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHD 125 (318)
Q Consensus 47 ~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~ 125 (318)
+.+...++|.+.++..-.+. +|.-+..++.+++..+.++.....|+|.+..-+.|.++.+|+..+.++..++..+++..
T Consensus 325 ~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~ 404 (690)
T KOG1243|consen 325 EEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRN 404 (690)
T ss_pred cccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhh
Confidence 34677899999999887666 99999999999999998888889999999999999999999999999999999999987
Q ss_pred HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHh
Q psy14015 126 LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNL 205 (318)
Q Consensus 126 ~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l 205 (318)
....++-++.++..|+...+|....-++|++...+...+|+ .-+.-.|...
T Consensus 405 Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~-----------------------------~vL~~aftra 455 (690)
T KOG1243|consen 405 LNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRK-----------------------------RVLASAFTRA 455 (690)
T ss_pred hcHHHHHHHHhhCccccCcccccceeeecccccccchhhhc-----------------------------cccchhhhhh
Confidence 77778989999989888999999988889887766543322 2245667778
Q ss_pred hcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChh
Q psy14015 206 CQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 270 (318)
Q Consensus 206 ~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~ 270 (318)
+.|+...-|++....+....+.+..+.+...|+|.+.-+..|++..||..+..++.++...+.+.
T Consensus 456 lkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~ 520 (690)
T KOG1243|consen 456 LKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV 520 (690)
T ss_pred hcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence 99999999999999999999999988888999999999999999999999999999988766554
No 28
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.92 E-value=2.6e-08 Score=86.67 Aligned_cols=189 Identities=14% Similarity=0.129 Sum_probs=125.4
Q ss_pred hchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhc-------cchHHhhhccCchhHHHHHHHHHHHHHHhhCC
Q psy14015 51 GELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHC-------LLPPLESLATVEETVVRDKAVESLRLISAQHS 122 (318)
Q Consensus 51 ~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~-------llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~ 122 (318)
+++.+.+..--.+.+| .|..+...|..++..-......+. +++.+...+.|....|-..|...+..++..++
T Consensus 6 ~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~ 85 (228)
T PF12348_consen 6 EEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLG 85 (228)
T ss_dssp GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 4556666554566788 999999999988753211122222 33444555677777888888999999998887
Q ss_pred hh--HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHH-H
Q psy14015 123 PH--DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAEL-R 199 (318)
Q Consensus 123 ~~--~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~l-l 199 (318)
.. ...+.++|.+.+.+.|....+|..|...+..++...+ ....+ .
T Consensus 86 ~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--------------------------------~~~~~~~ 133 (228)
T PF12348_consen 86 SHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS--------------------------------YSPKILL 133 (228)
T ss_dssp GGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---------------------------------H--HHHH
T ss_pred HhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--------------------------------cHHHHHH
Confidence 63 3556789999999999877788888766655543322 01233 7
Q ss_pred HHHHHhhcCCCHHHHHHHHHhhHHHHHHhc--hh-----hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhh
Q psy14015 200 SHFRNLCQDDTPMVRRAAAGKLGELAKVVE--VD-----YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD 271 (318)
Q Consensus 200 ~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~--~~-----~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~ 271 (318)
+.+...+++.++.+|..++..+..+....+ .. .....+.+.+..+++|+++.||.++-.++..+.+.+|...
T Consensus 134 ~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 134 EILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp HHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence 888889999999999999999999998887 11 1236799999999999999999999999999999888764
No 29
>KOG1824|consensus
Probab=98.90 E-value=2.1e-07 Score=91.99 Aligned_cols=266 Identities=15% Similarity=0.205 Sum_probs=150.3
Q ss_pred hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhH--------------------------------------------
Q psy14015 14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERT-------------------------------------------- 49 (318)
Q Consensus 14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~-------------------------------------------- 49 (318)
-+.-++..|.|.++.+...|++=|+-+.+.++.+..
T Consensus 48 vv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~t 127 (1233)
T KOG1824|consen 48 VVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAAT 127 (1233)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccH
Confidence 366778999999999999999999987766655421
Q ss_pred -hhchhhhhhhhc---CChHHHHHHHHHHHcccccCcCc--ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh
Q psy14015 50 -RGELIPFLTETI---YDEDEVLLALAEQLGTFTPNVGG--PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP 123 (318)
Q Consensus 50 -~~~llp~l~~l~---~D~~~VR~~aa~~L~~l~~~~~~--~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~ 123 (318)
.+.+.|.+.+.. .|.+.++..+...++.+...+|. +++-..++..+..-+..+-.-||.+|+.++..++...+.
T Consensus 128 V~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~ 207 (1233)
T KOG1824|consen 128 VCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNR 207 (1233)
T ss_pred HHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCH
Confidence 111222222111 11111444444444333333332 112222333333333444556666666666666666655
Q ss_pred hHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHH
Q psy14015 124 HDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFR 203 (318)
Q Consensus 124 ~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~ 203 (318)
+.+...+--.++.|.+..+...-..-+..++ .+|+..+.. . ....+.++|.+.
T Consensus 208 ~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~-------------------~i~r~ag~r-------~-~~h~~~ivp~v~ 260 (1233)
T KOG1824|consen 208 DLYVELIEHLLKGLSNRTQMSATRTYIQCLA-------------------AICRQAGHR-------F-GSHLDKIVPLVA 260 (1233)
T ss_pred HHHHHHHHHHHhccCCCCchHHHHHHHHHHH-------------------HHHHHhcch-------h-hcccchhhHHHH
Confidence 5544433333444444432211112222222 222222211 0 013467889999
Q ss_pred Hhh---cCCCHHHHHHHHHhhHHHHHHhchhh--hHhhHHHHHHHhh---------------------------------
Q psy14015 204 NLC---QDDTPMVRRAAAGKLGELAKVVEVDY--LKTDIIPMFVNLA--------------------------------- 245 (318)
Q Consensus 204 ~l~---~D~~~~VR~~aa~~L~~l~~~~~~~~--~~~~llp~l~~ll--------------------------------- 245 (318)
+++ +.+..+.|+.+.++|+.|......+. .+.+++......+
T Consensus 261 ~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsD 340 (1233)
T KOG1824|consen 261 DYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSD 340 (1233)
T ss_pred HHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhcccccc
Confidence 999 66779999999999999997654431 1223333222221
Q ss_pred -cCCcHHHHHHHHHHHHHHHhhCCh--hhhhHhhHHHHHHhccccccccccCCCCCCchhhHHhhhhhhhhhhcc
Q psy14015 246 -QDEQDSVRLLAVEACVSIASLLSQ--SDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISATTLRLMRHV 317 (318)
Q Consensus 246 -~D~~~~VR~aa~~~l~~l~~~l~~--~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~~~~~~~~~ 317 (318)
.|-+|.||+++++++..+...-.. ..+.+.+-|.++.-.++ -+.+|+.-++.. -..+++|+
T Consensus 341 DeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkE----------REEnVk~dvf~~-yi~ll~qt 404 (1233)
T KOG1824|consen 341 DEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKE----------REENVKADVFHA-YIALLKQT 404 (1233)
T ss_pred ccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHH----------HhhhHHHHHHHH-HHHHHHcC
Confidence 245899999999998887643322 24667789999999999 888999888853 34556654
No 30
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.90 E-value=1.3e-07 Score=102.01 Aligned_cols=242 Identities=16% Similarity=0.104 Sum_probs=175.8
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcC-ChHHHHHHHHHHHcccccCcCcccc------
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIY-DEDEVLLALAEQLGTFTPNVGGPEY------ 87 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~-D~~~VR~~aa~~L~~l~~~~~~~~~------ 87 (318)
|+.+++.|++.++..+..++..|..+... |... .++.+..++. |+..++..+.+.++.+.......+.
T Consensus 532 IppLV~LL~sgd~~~q~~Aa~AL~nLi~~-~d~~----~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~ 606 (2102)
T PLN03200 532 VPALLWLLKNGGPKGQEIAAKTLTKLVRT-ADAA----TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSA 606 (2102)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhc-cchh----HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhh
Confidence 56778889988999999999999998653 3222 2244445544 4444767778888887654433221
Q ss_pred hhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh---hHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcch
Q psy14015 88 VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP---HDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGV 164 (318)
Q Consensus 88 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~ 164 (318)
...-+|.+..|+...++.+++.|..++..++..-.+ .-+..-.+|.+..++.+....+|..++..++.+........
T Consensus 607 ~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q 686 (2102)
T PLN03200 607 ANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENR 686 (2102)
T ss_pred ccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHH
Confidence 234789999999999999999999999999874332 12333467777778888888899999998887764322221
Q ss_pred HHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch--hhhHhhHHHHHH
Q psy14015 165 KAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV--DYLKTDIIPMFV 242 (318)
Q Consensus 165 ~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~--~~~~~~llp~l~ 242 (318)
+..+ .....+|++.+++++++..++..++.+|..++..-+. +......+|.+.
T Consensus 687 ~~~~-------------------------v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv 741 (2102)
T PLN03200 687 KVSY-------------------------AAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLT 741 (2102)
T ss_pred HHHH-------------------------HHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHH
Confidence 1121 2345689999999999999999999999999874321 122356789999
Q ss_pred HhhcCCcHHHHHHHHHHHHHHHhhCChhh------hhHhhHHHHHHhccc
Q psy14015 243 NLAQDEQDSVRLLAVEACVSIASLLSQSD------VEQLVMPTLRQCSVQ 286 (318)
Q Consensus 243 ~ll~D~~~~VR~aa~~~l~~l~~~l~~~~------~~~~l~p~l~~ll~D 286 (318)
+++++.+..+|+.|+.++.+++..++.++ ...-.+..+..+|+-
T Consensus 742 ~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~ 791 (2102)
T PLN03200 742 RVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNS 791 (2102)
T ss_pred HHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhc
Confidence 99999999999999999999999887655 223467778888886
No 31
>KOG1241|consensus
Probab=98.89 E-value=3.2e-08 Score=95.82 Aligned_cols=269 Identities=15% Similarity=0.073 Sum_probs=183.0
Q ss_pred HHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChH-H-HHHHHHHHHcccccCcCcccch---hc-c
Q psy14015 18 LIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-E-VLLALAEQLGTFTPNVGGPEYV---HC-L 91 (318)
Q Consensus 18 l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~-~-VR~~aa~~L~~l~~~~~~~~~~---~~-l 91 (318)
.+..|.+..+..+..+.+-++.||..-=|...++++++.+..-..+++ . ++.+..+.+|.+++.+..+... +. +
T Consensus 95 il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iL 174 (859)
T KOG1241|consen 95 ILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDIL 174 (859)
T ss_pred HHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHH
Confidence 446778888888889999999998764445578899999988776655 4 9999999999999866543211 22 3
Q ss_pred chHHhhhcc-CchhHHHHHHHHHHHHHHhh----CChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccc----cCc
Q psy14015 92 LPPLESLAT-VEETVVRDKAVESLRLISAQ----HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPR----VTA 162 (318)
Q Consensus 92 lp~l~~l~~-d~~~~VR~~a~~~l~~l~~~----~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~----~~~ 162 (318)
.-++....+ .++..||-+|..+|..=.+. +..+.-.++|+..+++.-+.++.++|..|-..|.++..- ...
T Consensus 175 taIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~ 254 (859)
T KOG1241|consen 175 TAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEP 254 (859)
T ss_pred HHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555544 44789999999998875544 333444556777778877888888888887777665421 111
Q ss_pred chHHHH-HHHHHhhccCCCcccccc-------hh--------hcCc---------------cchHHHHHHHHHhhc----
Q psy14015 163 GVKAEL-RSHFRNLCQDDTPMQQGH-------VW--------ECGS---------------GVKAELRSHFRNLCQ---- 207 (318)
Q Consensus 163 ~~~~~l-~~~~~~l~~~~~~~vR~~-------v~--------~~~~---------------~~~~~ll~~l~~l~~---- 207 (318)
.....+ +-++..+-++ .++|--+ +. +.++ ..-+.++|.+++++.
T Consensus 255 yM~~alfaitl~amks~-~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde 333 (859)
T KOG1241|consen 255 YMEQALFAITLAAMKSD-NDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDE 333 (859)
T ss_pred HHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCC
Confidence 111111 1111112111 1111110 00 0010 122478899888763
Q ss_pred ---CCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhh---hHhhHHHHH
Q psy14015 208 ---DDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV---EQLVMPTLR 281 (318)
Q Consensus 208 ---D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~---~~~l~p~l~ 281 (318)
|++|..-++|..||.-+++..|.+. ...++|+++.-.+.|+|.-|.+++-+++.+...-.+..- ....+|.++
T Consensus 334 ~~d~DdWnp~kAAg~CL~l~A~~~~D~I-v~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii 412 (859)
T KOG1241|consen 334 DDDDDDWNPAKAAGVCLMLFAQCVGDDI-VPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSII 412 (859)
T ss_pred CcccccCcHHHHHHHHHHHHHHHhcccc-hhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHH
Confidence 3569999999999999999998765 479999999999999999999999999988876555432 244889999
Q ss_pred Hhccccc
Q psy14015 282 QCSVQIV 288 (318)
Q Consensus 282 ~ll~D~~ 288 (318)
.+..|++
T Consensus 413 ~lm~D~s 419 (859)
T KOG1241|consen 413 NLMSDPS 419 (859)
T ss_pred HHhcCch
Confidence 9999955
No 32
>PTZ00429 beta-adaptin; Provisional
Probab=98.84 E-value=6e-07 Score=90.09 Aligned_cols=275 Identities=14% Similarity=0.065 Sum_probs=166.0
Q ss_pred hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChH-HHHHHHHHHHcccccCcCcccchhccc
Q psy14015 14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAEQLGTFTPNVGGPEYVHCLL 92 (318)
Q Consensus 14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~-~VR~~aa~~L~~l~~~~~~~~~~~~ll 92 (318)
.+..+.+.|++.+...|..+++++-... ..|.+ ...+.|-+.+++..++ ++|+-+.-.+..+++. .++..-..+
T Consensus 33 e~~ELr~~L~s~~~~~kk~alKkvIa~m-t~G~D--vS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~--~pelalLaI 107 (746)
T PTZ00429 33 EGAELQNDLNGTDSYRKKAAVKRIIANM-TMGRD--VSYLFVDVVKLAPSTDLELKKLVYLYVLSTARL--QPEKALLAV 107 (746)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHHH-HCCCC--chHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--ChHHHHHHH
Confidence 4778888999999888888888876543 35754 3557777777776544 4999988888887652 122223345
Q ss_pred hHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcch-HHHHHHH
Q psy14015 93 PPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGV-KAELRSH 171 (318)
Q Consensus 93 p~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~-~~~l~~~ 171 (318)
..+..=+.|+++.||..|+.++..+-. ..+.+.+++.+++.+.|+++.||++|+-.+.+++...++.. ...+.+.
T Consensus 108 Ntl~KDl~d~Np~IRaLALRtLs~Ir~----~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~ 183 (746)
T PTZ00429 108 NTFLQDTTNSSPVVRALAVRTMMCIRV----SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKD 183 (746)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCCc----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHH
Confidence 566777789999999999998877643 34566788888999999999999999999988876544321 1223333
Q ss_pred HHhhccCCCcccccch-h---hcC---ccchHHHHHHHHHhh---cCCCHHHHHHHHHhhHHHHHHhch--hhhHhhHHH
Q psy14015 172 FRNLCQDDTPMQQGHV-W---ECG---SGVKAELRSHFRNLC---QDDTPMVRRAAAGKLGELAKVVEV--DYLKTDIIP 239 (318)
Q Consensus 172 ~~~l~~~~~~~vR~~v-~---~~~---~~~~~~ll~~l~~l~---~D~~~~VR~~aa~~L~~l~~~~~~--~~~~~~llp 239 (318)
+.++..|.+|.|.... . ++. +...+-..+.+.+++ .+-+.--+-.+...|.. ..+ +.....++.
T Consensus 184 L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~----y~P~~~~e~~~il~ 259 (746)
T PTZ00429 184 LVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAA----QRPSDKESAETLLT 259 (746)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHh----cCCCCcHHHHHHHH
Confidence 4444555555433310 0 000 000001111111111 11111111112222211 111 112345777
Q ss_pred HHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhh---HhhHHHHHHhccccccccccCCCCCCchhhHHhhhhhhh
Q psy14015 240 MFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE---QLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISATTLR 312 (318)
Q Consensus 240 ~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~---~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~~~~ 312 (318)
.+...++..+..|--++++++..+.....++... ..+.+.++.+++ ..|++|+-+.+++.+=
T Consensus 260 ~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~s-----------s~~eiqyvaLr~I~~i 324 (746)
T PTZ00429 260 RVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSR-----------RDAETQYIVCKNIHAL 324 (746)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhC-----------CCccHHHHHHHHHHHH
Confidence 7777778888899998888888877655443222 234466666654 5789999888876543
No 33
>KOG0166|consensus
Probab=98.82 E-value=2.7e-07 Score=87.36 Aligned_cols=242 Identities=17% Similarity=0.246 Sum_probs=168.3
Q ss_pred HHHHHHHhc-CccHHHHHHHHHhHHHHHHhhChHh---HhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccch-
Q psy14015 15 IAVLIDELK-NEDVQLRLNSIKKLSTIALALGQER---TRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYV- 88 (318)
Q Consensus 15 i~~l~~~l~-~~~~~~R~~~~~~L~~ia~~lg~~~---~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~- 88 (318)
++.+.+-|. ++++.++.+++..|..||..-.... .....+|.+..++..++. |+..++.+|+.++.. ++.+.
T Consensus 111 v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagd--s~~~Rd 188 (514)
T KOG0166|consen 111 VPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGD--SPDCRD 188 (514)
T ss_pred HHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccC--ChHHHH
Confidence 456667775 6678999999999999985321110 233568888899888776 999999999998742 12222
Q ss_pred ----hccc-hHHhhhccCchhHHHHHHHHHHHHHHhhCC---hhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhcccc
Q psy14015 89 ----HCLL-PPLESLATVEETVVRDKAVESLRLISAQHS---PHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRV 160 (318)
Q Consensus 89 ----~~ll-p~l~~l~~d~~~~VR~~a~~~l~~l~~~~~---~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~ 160 (318)
..++ |++..+..+........++-+|..++..-. +-+....++|.+..++++.+..+..-||+.+..+...-
T Consensus 189 ~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ 268 (514)
T KOG0166|consen 189 YVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS 268 (514)
T ss_pred HHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 2233 344444333333455556667888886652 23455569999999999988888888888877554433
Q ss_pred CcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh-----hhHh
Q psy14015 161 TAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD-----YLKT 235 (318)
Q Consensus 161 ~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~-----~~~~ 235 (318)
.+..+.. ....+.|.+..++......|+-.|..++|.++. |.+ -+..
T Consensus 269 ne~iq~v--------------------------i~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt--G~d~QTq~vi~~ 320 (514)
T KOG0166|consen 269 NEKIQMV--------------------------IDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVT--GSDEQTQVVINS 320 (514)
T ss_pred hHHHHHH--------------------------HHccchHHHHHHHcCCCcccccHHHhhccceee--ccHHHHHHHHhc
Confidence 3222111 234568999999999999999999999999764 332 2334
Q ss_pred hHHHHHHHhhc-CCcHHHHHHHHHHHHHHHhhCChh---hhhHhhHHHHHHhccc
Q psy14015 236 DIIPMFVNLAQ-DEQDSVRLLAVEACVSIASLLSQS---DVEQLVMPTLRQCSVQ 286 (318)
Q Consensus 236 ~llp~l~~ll~-D~~~~VR~aa~~~l~~l~~~l~~~---~~~~~l~p~l~~ll~D 286 (318)
..+|.|..++. .+...+|+.|+..++++...-... .....++|.++.+++.
T Consensus 321 ~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~ 375 (514)
T KOG0166|consen 321 GALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQT 375 (514)
T ss_pred ChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhc
Confidence 58999999998 778889999999999999732211 1223599999999998
No 34
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.82 E-value=2.8e-08 Score=72.91 Aligned_cols=85 Identities=32% Similarity=0.404 Sum_probs=67.7
Q ss_pred HHHHHhh-cCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCC
Q psy14015 132 PLVQRLA-SGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDT 210 (318)
Q Consensus 132 p~~~~l~-~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~ 210 (318)
|.+.+.+ +|+++.+|..++..++.+ ...+.+|.+..+++|++
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~-------------------------------------~~~~~~~~L~~~l~d~~ 44 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGEL-------------------------------------GDPEAIPALIELLKDED 44 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCC-------------------------------------THHHHHHHHHHHHTSSS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc-------------------------------------CCHhHHHHHHHHHcCCC
Confidence 4555555 889999999998888732 22567899999999999
Q ss_pred HHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCC-cHHHHHHHHHHHH
Q psy14015 211 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDE-QDSVRLLAVEACV 261 (318)
Q Consensus 211 ~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~-~~~VR~aa~~~l~ 261 (318)
+.||..++.+|+.++. ...+|.+.+++.|+ ++.||.+++.+|+
T Consensus 45 ~~vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 45 PMVRRAAARALGRIGD--------PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHHHHHCCHH--------HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--------HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 9999999999999863 45788888877664 6678999998875
No 35
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.76 E-value=2e-06 Score=83.61 Aligned_cols=280 Identities=19% Similarity=0.215 Sum_probs=180.8
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHhhCh--H-hHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcc--cch
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQ--E-RTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGP--EYV 88 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~--~-~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~--~~~ 88 (318)
.+.+...|.++++.+|.-+++.+..++..-+. + -...+++|.+..++.|++. |...+++.|..+++.-.+- -+.
T Consensus 79 ~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~ 158 (503)
T PF10508_consen 79 QPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFD 158 (503)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhC
Confidence 45677889999999999999998887533110 1 1235789999999988776 9999999999998643221 112
Q ss_pred hccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh--HHh-hhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchH
Q psy14015 89 HCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH--DLE-AHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVK 165 (318)
Q Consensus 89 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~-~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~ 165 (318)
..+++.+..++...++.+|..+.+.+..++...+.. .+. .-+++.+.+.+.+++.-+|.++++++..+... ....
T Consensus 159 ~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~--~~g~ 236 (503)
T PF10508_consen 159 SNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET--PHGL 236 (503)
T ss_pred cchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC--hhHH
Confidence 223777888887778899999999999998775442 122 12777777777788889999999999987652 2111
Q ss_pred HHHH--HHHHhhc---c--CCCccccc-------c----hhhcCc----cchHHHHHHHHHhhcCCCHHHHHHHHHhhHH
Q psy14015 166 AELR--SHFRNLC---Q--DDTPMQQG-------H----VWECGS----GVKAELRSHFRNLCQDDTPMVRRAAAGKLGE 223 (318)
Q Consensus 166 ~~l~--~~~~~l~---~--~~~~~vR~-------~----v~~~~~----~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~ 223 (318)
..+. ..+..++ . ..+|..+. + +....+ .....++..+.+..+..+...|..|..++|.
T Consensus 237 ~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~ 316 (503)
T PF10508_consen 237 QYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQ 316 (503)
T ss_pred HHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence 1111 1222221 1 11221111 0 000011 1123455555677788999999999999999
Q ss_pred HHHHhc-hhh-------hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhH--hhHH-------------HH
Q psy14015 224 LAKVVE-VDY-------LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQ--LVMP-------------TL 280 (318)
Q Consensus 224 l~~~~~-~~~-------~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~--~l~p-------------~l 280 (318)
++.... .+. ....++..+....+.....+|..+..+++.+...-+.....+ .+.. .+
T Consensus 317 igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l 396 (503)
T PF10508_consen 317 IGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLL 396 (503)
T ss_pred HhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHH
Confidence 995432 211 223456666666777888899999999999875443311111 1222 55
Q ss_pred HHhccccccccccCCCCCCchhhHHh
Q psy14015 281 RQCSVQIVDHKFCPNNEFHPLELHVI 306 (318)
Q Consensus 281 ~~ll~D~~~~~~~~~~~~~~Vr~~~i 306 (318)
..+++. +||++|..+-
T Consensus 397 ~~~~~q----------PF~elr~a~~ 412 (503)
T PF10508_consen 397 MSLLKQ----------PFPELRCAAY 412 (503)
T ss_pred HHHhcC----------CchHHHHHHH
Confidence 566666 9999998765
No 36
>KOG1241|consensus
Probab=98.76 E-value=7.3e-07 Score=86.60 Aligned_cols=269 Identities=15% Similarity=0.118 Sum_probs=158.3
Q ss_pred HHHHHHHhcCccHH-HHHHHHHhHHHHHHhhChHhH---hhchhhhhhhhc-CC-hHH-HHHHHHHHHcccccCcC----
Q psy14015 15 IAVLIDELKNEDVQ-LRLNSIKKLSTIALALGQERT---RGELIPFLTETI-YD-EDE-VLLALAEQLGTFTPNVG---- 83 (318)
Q Consensus 15 i~~l~~~l~~~~~~-~R~~~~~~L~~ia~~lg~~~~---~~~llp~l~~l~-~D-~~~-VR~~aa~~L~~l~~~~~---- 83 (318)
|..+....-++++. ++..+++.++-++..+.|+.. .+.++..+..-. .. .+. ||-++...|..-.++.+
T Consensus 131 i~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~ 210 (859)
T KOG1241|consen 131 IVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFN 210 (859)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhc
Confidence 44555555556654 899999999999999888753 334555555433 33 333 99999998876544332
Q ss_pred cccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh--hHHh-hhHHHHHHHhhcCCCchhhhhhhhhhhhhc---
Q psy14015 84 GPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP--HDLE-AHFVPLVQRLASGDWFTSRTSACGLFSVCY--- 157 (318)
Q Consensus 84 ~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~~~~-~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~--- 157 (318)
.+.-.++|+...-.....++..||.+|..+|..|....=+ +.+. +.+.++-..-.++++..|..-+++--+.++
T Consensus 211 ~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEE 290 (859)
T KOG1241|consen 211 NEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEE 290 (859)
T ss_pred cHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence 3333455666655566677788888888888877653211 0011 112222222122222222222211111000
Q ss_pred -----------c-ccC-------c----chHHHHHHHHHhhcc-CCCcc-----ccc---chhh-----cCccchHHHHH
Q psy14015 158 -----------P-RVT-------A----GVKAELRSHFRNLCQ-DDTPM-----QQG---HVWE-----CGSGVKAELRS 200 (318)
Q Consensus 158 -----------~-~~~-------~----~~~~~l~~~~~~l~~-~~~~~-----vR~---~v~~-----~~~~~~~~ll~ 200 (318)
. ... . .+...+. ..|++ +.++. .-. .|.. .+++.-.+++|
T Consensus 291 iD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll---~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~ 367 (859)
T KOG1241|consen 291 IDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLL---ELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLP 367 (859)
T ss_pred HHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHH---HHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHH
Confidence 0 000 0 1111111 12222 11110 000 0110 11234567888
Q ss_pred HHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh---hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCCh----hhhh
Q psy14015 201 HFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY---LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ----SDVE 273 (318)
Q Consensus 201 ~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~---~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~----~~~~ 273 (318)
.+.+-.+.++|+-|.+++.+||.+...-.++. .....+|.+.++..||+-+||.+++.+++.+++.+.. +...
T Consensus 368 Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l 447 (859)
T KOG1241|consen 368 FIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELL 447 (859)
T ss_pred HHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhh
Confidence 88888999999999999999999987443332 3567899999999999999999999999999988754 3344
Q ss_pred HhhHHHHHHhccc
Q psy14015 274 QLVMPTLRQCSVQ 286 (318)
Q Consensus 274 ~~l~p~l~~ll~D 286 (318)
+.+++++..-|+|
T Consensus 448 ~~~l~~l~~gL~D 460 (859)
T KOG1241|consen 448 QSKLSALLEGLND 460 (859)
T ss_pred hHHHHHHHHHhhh
Confidence 5678888888888
No 37
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.76 E-value=1.4e-06 Score=82.39 Aligned_cols=265 Identities=15% Similarity=0.092 Sum_probs=135.2
Q ss_pred HHhcCccHHHHHHHHHhHHHHHHh-hChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhh
Q psy14015 20 DELKNEDVQLRLNSIKKLSTIALA-LGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLES 97 (318)
Q Consensus 20 ~~l~~~~~~~R~~~~~~L~~ia~~-lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ 97 (318)
+++++.-..+-+++++.....+.. +|++ .....+..|..++.-... .|-+|.+.|.+++. ..++-....-+-+..
T Consensus 271 ~wls~k~emV~lE~Ar~v~~~~~~nv~~~-~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam--~~P~kv~vcN~evEs 347 (898)
T COG5240 271 SWLSDKFEMVFLEAARAVCALSEENVGSQ-FVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAM--KYPQKVSVCNKEVES 347 (898)
T ss_pred HHhcCcchhhhHHHHHHHHHHHHhccCHH-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh--hCCceeeecChhHHH
Confidence 444443344444555555444433 3444 233334444444444333 55555666555543 112222233345566
Q ss_pred hccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhcc
Q psy14015 98 LATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQ 177 (318)
Q Consensus 98 l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~ 177 (318)
|..|.+..+-..|+.+|.+-+ +.+.+. .++..+-.+.+|-+-.-+..++..+..++..++..-...+--....||.
T Consensus 348 LIsd~Nr~IstyAITtLLKTG---t~e~id-rLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~ 423 (898)
T COG5240 348 LISDENRTISTYAITTLLKTG---TEETID-RLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQ 423 (898)
T ss_pred HhhcccccchHHHHHHHHHcC---chhhHH-HHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHh
Confidence 666666555555544444333 222222 2444455555554444445555555444444433222222111123333
Q ss_pred CCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHh-------------chh----hhHhhHHHH
Q psy14015 178 DDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVV-------------EVD----YLKTDIIPM 240 (318)
Q Consensus 178 ~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~-------------~~~----~~~~~llp~ 240 (318)
-.+- .+++.++..+..... ..|.-|.-|...|..+.+-+ |.| ......+-.
T Consensus 424 eGg~-----------eFK~~~Vdaisd~~~-~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrh 491 (898)
T COG5240 424 EGGL-----------EFKKYMVDAISDAME-NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRH 491 (898)
T ss_pred cccc-----------hHHHHHHHHHHHHHh-hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHH
Confidence 2222 356666666666653 33444555555555554422 221 000111222
Q ss_pred HHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCCCCchhhHHhhhhhhhhhh
Q psy14015 241 FVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISATTLRLMR 315 (318)
Q Consensus 241 l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~~~~~~~ 315 (318)
+.+-+-=++..||.+|+.++..++-..+.....+.+...+.+|++| .+.+||-.+. ..|+.|+
T Consensus 492 IyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD----------~DdeVRdrAs--f~l~~~~ 554 (898)
T COG5240 492 IYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLND----------QDDEVRDRAS--FLLRNMR 554 (898)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhc----------ccHHHHHHHH--HHHHhhh
Confidence 2222233566899999999999998877777788899999999999 8888887765 5555554
No 38
>KOG0213|consensus
Probab=98.68 E-value=1.5e-06 Score=84.30 Aligned_cols=234 Identities=16% Similarity=0.189 Sum_probs=174.5
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHh---hChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcc---cc
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALA---LGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGP---EY 87 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~---lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~---~~ 87 (318)
+...+..|++..+.+|+.+++..+.++.. +|.+.....+--.|-+.+..+++ |--.+..+++.+...+|-. -.
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pP 880 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPP 880 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCC
Confidence 45566889999999999998888888754 67766666666566666655554 9888888888887766632 23
Q ss_pred hhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh----hHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcc
Q psy14015 88 VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP----HDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG 163 (318)
Q Consensus 88 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~----~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~ 163 (318)
...++|-+...+++....|.+.++.-++.|+...++ ..++.+-..++ ++++.-.-.+|.+|...||-|...++.
T Consensus 881 i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLl-elLkahkK~iRRaa~nTfG~IakaIGP- 958 (1172)
T KOG0213|consen 881 IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELL-ELLKAHKKEIRRAAVNTFGYIAKAIGP- 958 (1172)
T ss_pred hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhHHHHhcCH-
Confidence 456888888888889999999999999999976543 44555433333 344544567888888888765443332
Q ss_pred hHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHH
Q psy14015 164 VKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVN 243 (318)
Q Consensus 164 ~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ 243 (318)
.+++..+++-++-+.-.-|-...-+++-+++.+|+ =.++|++.+
T Consensus 959 --------------------------------qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p----FtVLPalmn 1002 (1172)
T KOG0213|consen 959 --------------------------------QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP----FTVLPALMN 1002 (1172)
T ss_pred --------------------------------HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc----hhhhHHHHh
Confidence 44566666666656666777788888888888886 348999999
Q ss_pred hhcCCcHHHHHHHHHHHHHHHhhCChh--hhhHhhHHHHHHhccc
Q psy14015 244 LAQDEQDSVRLLAVEACVSIASLLSQS--DVEQLVMPTLRQCSVQ 286 (318)
Q Consensus 244 ll~D~~~~VR~aa~~~l~~l~~~l~~~--~~~~~l~p~l~~ll~D 286 (318)
=..-|+..|+...+.++.-+.+.+|.. +..-.+.|.+...+.|
T Consensus 1003 eYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmD 1047 (1172)
T KOG0213|consen 1003 EYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMD 1047 (1172)
T ss_pred hccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhcc
Confidence 999999999999999999999999874 3344589999999999
No 39
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.64 E-value=1.4e-07 Score=69.12 Aligned_cols=84 Identities=29% Similarity=0.351 Sum_probs=67.8
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhH
Q psy14015 199 RSHFRNLC-QDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVM 277 (318)
Q Consensus 199 l~~l~~l~-~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~ 277 (318)
+|.+.+.+ +|+++.||..++..|+.+.. ...+|.+..+++|+++.||.+++.+++.+. .+..+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------~~~~~ 64 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD--------PEAIPALIELLKDEDPMVRRAAARALGRIG--------DPEAI 64 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH--------HHHTH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------CHHHH
Confidence 46777777 89999999999999996643 468999999999999999999999999875 24578
Q ss_pred HHHHHhccccccccccCCCC-CCchhhHHhhh
Q psy14015 278 PTLRQCSVQIVDHKFCPNNE-FHPLELHVISA 308 (318)
Q Consensus 278 p~l~~ll~D~~~~~~~~~~~-~~~Vr~~~i~~ 308 (318)
|.+.+++.| + +..||..+++.
T Consensus 65 ~~L~~~l~~----------~~~~~vr~~a~~a 86 (88)
T PF13646_consen 65 PALIKLLQD----------DDDEVVREAAAEA 86 (88)
T ss_dssp HHHHHHHTC-----------SSHHHHHHHHHH
T ss_pred HHHHHHHcC----------CCcHHHHHHHHhh
Confidence 889998877 4 34458777654
No 40
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.61 E-value=4.1e-06 Score=79.90 Aligned_cols=243 Identities=12% Similarity=0.115 Sum_probs=177.1
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHH---HhhChHhHhhchhhhhhhhcCC-hHHHHHHHHHHHcccccCcCc---ccc
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIA---LALGQERTRGELIPFLTETIYD-EDEVLLALAEQLGTFTPNVGG---PEY 87 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia---~~lg~~~~~~~llp~l~~l~~D-~~~VR~~aa~~L~~l~~~~~~---~~~ 87 (318)
+...+..|++..+.+|..+++..+.++ +.+|.......+--.|-+-+.. ..||--.+..++..+....+- +-.
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpP 685 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPP 685 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCc
Confidence 566778999999999999888777766 4577765555665555555544 445888877777766554331 123
Q ss_pred hhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh----hHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcc
Q psy14015 88 VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP----HDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG 163 (318)
Q Consensus 88 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~----~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~ 163 (318)
...|+|-+...+.+....|-...+.-++.|+...++ ..++.+-..++ .++++-+-.+|.+|...||.+...++.
T Consensus 686 i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLv-d~Lks~nKeiRR~A~~tfG~Is~aiGP- 763 (975)
T COG5181 686 ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELV-DSLKSWNKEIRRNATETFGCISRAIGP- 763 (975)
T ss_pred hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHH-HHHHHhhHHHHHhhhhhhhhHHhhcCH-
Confidence 455777777777888888888888888888866543 45555444443 344555567999998888865433332
Q ss_pred hHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHH
Q psy14015 164 VKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVN 243 (318)
Q Consensus 164 ~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ 243 (318)
.+++.+++.-++-+.-.-|-..+-+++-+++.+|+ =.++|.+..
T Consensus 764 --------------------------------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp----fsVlP~lm~ 807 (975)
T COG5181 764 --------------------------------QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP----FSVLPTLMS 807 (975)
T ss_pred --------------------------------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc----hhhHHHHHh
Confidence 45677777777767777888888889999998887 358999999
Q ss_pred hhcCCcHHHHHHHHHHHHHHHhhCChhh--hhHhhHHHHHHhccccccccccCCCCCCchhhHH
Q psy14015 244 LAQDEQDSVRLLAVEACVSIASLLSQSD--VEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHV 305 (318)
Q Consensus 244 ll~D~~~~VR~aa~~~l~~l~~~l~~~~--~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~ 305 (318)
-..-|+..|+.....++.-+.+.+|+.. ..-.+.|.+...+.| ++|--|...
T Consensus 808 dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltD----------rD~vhRqta 861 (975)
T COG5181 808 DYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTD----------RDPVHRQTA 861 (975)
T ss_pred cccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcc----------cchHHHHHH
Confidence 9999999999999999999999998853 334689999999999 777666543
No 41
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.57 E-value=6.9e-07 Score=66.75 Aligned_cols=69 Identities=23% Similarity=0.242 Sum_probs=58.2
Q ss_pred chHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhh--HhhHHHHHHHhhcCCcHHHHHHHHHHHHHH
Q psy14015 194 VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYL--KTDIIPMFVNLAQDEQDSVRLLAVEACVSI 263 (318)
Q Consensus 194 ~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~--~~~llp~l~~ll~D~~~~VR~aa~~~l~~l 263 (318)
..++++|+++..++|++|+||..|+++|..++...+.+.. ..++++.+.+++.|++..||.++ +.+..+
T Consensus 24 ~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 24 YLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence 3477899999999999999999999999999998876532 46789999999999999999987 444433
No 42
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.53 E-value=1.4e-05 Score=77.79 Aligned_cols=257 Identities=16% Similarity=0.138 Sum_probs=161.6
Q ss_pred hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCc---ccchh
Q psy14015 14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG---PEYVH 89 (318)
Q Consensus 14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~---~~~~~ 89 (318)
|...+.+.+++.+...=..++..|..+.....+........|++...+..+++ ||.-++++++.++..-.+ .-...
T Consensus 39 ~~~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 39 PEPVLFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred hHHHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 33346677877766655566777777776666666678889999998888777 999999998887642211 01225
Q ss_pred ccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh-hHH-hhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHH
Q psy14015 90 CLLPPLESLATVEETVVRDKAVESLRLISAQHSP-HDL-EAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAE 167 (318)
Q Consensus 90 ~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~-~~~-~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~ 167 (318)
.+++.+..++.|++..|...|..+|..++..... +.+ ...+++.+.++...++..+|..+.+++..+... ++.....
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~-S~~~~~~ 197 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASH-SPEAAEA 197 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhc-CHHHHHH
Confidence 5889999999999999999999999999976432 112 223477777777665556676666666554322 1111111
Q ss_pred HHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHh-chh-----hhHhhHHHHH
Q psy14015 168 LRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVV-EVD-----YLKTDIIPMF 241 (318)
Q Consensus 168 l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~-~~~-----~~~~~llp~l 241 (318)
...+.+++.+...+++++..||.+++..++.++..- |.+ .+.+.+...+
T Consensus 198 -------------------------~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l 252 (503)
T PF10508_consen 198 -------------------------VVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLL 252 (503)
T ss_pred -------------------------HHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHH
Confidence 122458899999999999999999999999999732 222 2233344444
Q ss_pred HHhhcCC-cHHHH-HHHHHHHHHHHhhCChhhhh---HhhHHHHHHhccccccccccCCCCCCchhhHHhh
Q psy14015 242 VNLAQDE-QDSVR-LLAVEACVSIASLLSQSDVE---QLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVIS 307 (318)
Q Consensus 242 ~~ll~D~-~~~VR-~aa~~~l~~l~~~l~~~~~~---~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~ 307 (318)
.....|| ...+. -..+...+.++.. ++..+. ..++..+..++.. .++..+..++.
T Consensus 253 ~~~~~dp~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~~~l~~~~~s----------~d~~~~~~A~d 312 (503)
T PF10508_consen 253 QDSEEDPRLSSLLLPGRMKFFGNLARV-SPQEVLELYPAFLERLFSMLES----------QDPTIREVAFD 312 (503)
T ss_pred hccccCCcccchhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhCC----------CChhHHHHHHH
Confidence 4444555 22211 1222333444433 333222 2344455555555 67777766653
No 43
>KOG0213|consensus
Probab=98.53 E-value=4.4e-06 Score=81.17 Aligned_cols=214 Identities=17% Similarity=0.225 Sum_probs=156.5
Q ss_pred HHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhc-CChH-H-HHHHHHHHHcccccCcCcccchhccch
Q psy14015 17 VLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETI-YDED-E-VLLALAEQLGTFTPNVGGPEYVHCLLP 93 (318)
Q Consensus 17 ~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~-~D~~-~-VR~~aa~~L~~l~~~~~~~~~~~~llp 93 (318)
.++=..+.-.+.-|.++++.|.+=+..+|.....+.++|.+-... +|.. + +-+.+-+.|.++-..+ .-+...|+-
T Consensus 367 ~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlv--rpYVhkILv 444 (1172)
T KOG0213|consen 367 RLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLV--RPYVHKILV 444 (1172)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccc--hhceeeeEE
Confidence 333344556677899999999999888998888899999997654 4432 3 5566666666664322 224566888
Q ss_pred HHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHH
Q psy14015 94 PLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFR 173 (318)
Q Consensus 94 ~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~ 173 (318)
.+..++.|++...|...-+.+..++...+-......+-|= ..+....||...+..++.+...++
T Consensus 445 Viepllided~yar~egreIisnLakaaGla~mistmrpD----idn~deYVRnttarafavvasalg------------ 508 (1172)
T KOG0213|consen 445 VIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPD----IDNKDEYVRNTTARAFAVVASALG------------ 508 (1172)
T ss_pred EeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCC----cccccHHHHHHHHHHHHHHHHHhC------------
Confidence 8999999999999999988888888766543222211111 133456788887777664433222
Q ss_pred hhccCCCcccccchhhcCccchHHHHHHHHHhhcCC-CHHHHHHHHHhhHHHHHHhchhhh--HhhHHHHHHHhhcCCcH
Q psy14015 174 NLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDD-TPMVRRAAAGKLGELAKVVEVDYL--KTDIIPMFVNLAQDEQD 250 (318)
Q Consensus 174 ~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~-~~~VR~~aa~~L~~l~~~~~~~~~--~~~llp~l~~ll~D~~~ 250 (318)
-..++|.+..+|... +|.-|...+++.-+++..+|-... ...++.++.+.+.|.+.
T Consensus 509 ---------------------ip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~q 567 (1172)
T KOG0213|consen 509 ---------------------IPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQ 567 (1172)
T ss_pred ---------------------cHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccch
Confidence 266889999999987 899999999999999998885422 34577788899999999
Q ss_pred HHHHHHHHHHHHHHhhCCh
Q psy14015 251 SVRLLAVEACVSIASLLSQ 269 (318)
Q Consensus 251 ~VR~aa~~~l~~l~~~l~~ 269 (318)
-||..++.+++.+++..++
T Consensus 568 kVR~itAlalsalaeaa~P 586 (1172)
T KOG0213|consen 568 KVRTITALALSALAEAATP 586 (1172)
T ss_pred hhhhHHHHHHHHHHHhcCC
Confidence 9999999999999987766
No 44
>KOG0567|consensus
Probab=98.45 E-value=4.3e-06 Score=72.22 Aligned_cols=179 Identities=21% Similarity=0.175 Sum_probs=109.2
Q ss_pred hchhhhhhhhcCChH--H-HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhH--
Q psy14015 51 GELIPFLTETIYDED--E-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHD-- 125 (318)
Q Consensus 51 ~~llp~l~~l~~D~~--~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~-- 125 (318)
.+-+|.+...+.|++ + ||..+++.|+.+. ...+++++..+.+|+-..||+.+..++..+--.-.-..
T Consensus 66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~--------~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~ 137 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG--------DPESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIA 137 (289)
T ss_pred chhhHHHHHHhcccccchHHHHHHHHHHHhhc--------chhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcccccc
Confidence 345777777776633 4 8888888888763 23467788887788888888877666665532211000
Q ss_pred --------------HhhhHHHHHHHhhcCCC--chhhhhh------------hhhhhhhccccCcchHHHHHHHHHhhcc
Q psy14015 126 --------------LEAHFVPLVQRLASGDW--FTSRTSA------------CGLFSVCYPRVTAGVKAELRSHFRNLCQ 177 (318)
Q Consensus 126 --------------~~~~ilp~~~~l~~d~~--~~vR~~a------------~~~l~~~~~~~~~~~~~~l~~~~~~l~~ 177 (318)
... =+.-+...+.|.. -.-|+.| +..|..-...-+..+|.+.+-.|++|.+
T Consensus 138 ~~~p~~SvdPa~p~~~s-sv~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s 216 (289)
T KOG0567|consen 138 NSSPYISVDPAPPANLS-SVHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQS 216 (289)
T ss_pred ccCccccCCCCCccccc-cHHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccc
Confidence 000 0111111122211 1112211 1112111111123355555555555433
Q ss_pred CCCcccccchhhcCccchHHHHHHHHHhhcC--CCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHH
Q psy14015 178 DDTPMQQGHVWECGSGVKAELRSHFRNLCQD--DTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLL 255 (318)
Q Consensus 178 ~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D--~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~a 255 (318)
+..+|.+.+.+.| +++.||.-|+.+||.++. ++.+++++..++|+.+.||..
T Consensus 217 ------------------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--------e~~~~vL~e~~~D~~~vv~es 270 (289)
T KOG0567|consen 217 ------------------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--------EDCVEVLKEYLGDEERVVRES 270 (289)
T ss_pred ------------------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--------HHHHHHHHHHcCCcHHHHHHH
Confidence 4557888888777 579999999999999986 678999999999999999999
Q ss_pred HHHHHHHHH
Q psy14015 256 AVEACVSIA 264 (318)
Q Consensus 256 a~~~l~~l~ 264 (318)
+.-++.-.-
T Consensus 271 c~valdm~e 279 (289)
T KOG0567|consen 271 CEVALDMLE 279 (289)
T ss_pred HHHHHHHHH
Confidence 988776544
No 45
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.40 E-value=2.3e-06 Score=63.96 Aligned_cols=83 Identities=18% Similarity=0.168 Sum_probs=71.6
Q ss_pred HHHHHHHhhHHHHHHhchh--hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhh--hhHhhHHHHHHhccccc
Q psy14015 213 VRRAAAGKLGELAKVVEVD--YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD--VEQLVMPTLRQCSVQIV 288 (318)
Q Consensus 213 VR~~aa~~L~~l~~~~~~~--~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~--~~~~l~p~l~~ll~D~~ 288 (318)
-|+....+|..++..+|.+ ...+.++|.+...+.|++|.||..+++++.++++..+.+. +...+++.+.+++.|
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D-- 79 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSAD-- 79 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--
Confidence 4888888999998888764 3457899999999999999999999999999999887764 356799999999999
Q ss_pred cccccCCCCCCchhhHH
Q psy14015 289 DHKFCPNNEFHPLELHV 305 (318)
Q Consensus 289 ~~~~~~~~~~~~Vr~~~ 305 (318)
.+++||...
T Consensus 80 --------~d~~Vr~~a 88 (97)
T PF12755_consen 80 --------PDENVRSAA 88 (97)
T ss_pred --------CchhHHHHH
Confidence 999998776
No 46
>KOG4224|consensus
Probab=98.37 E-value=2.5e-06 Score=76.81 Aligned_cols=207 Identities=20% Similarity=0.175 Sum_probs=142.9
Q ss_pred chhhhhhhhcCChH-HHHHHHHHHHcccccCcCcccchhccc---hHHhhhccCchhHHHHHHHHHHHHHHhhCChh-HH
Q psy14015 52 ELIPFLTETIYDED-EVLLALAEQLGTFTPNVGGPEYVHCLL---PPLESLATVEETVVRDKAVESLRLISAQHSPH-DL 126 (318)
Q Consensus 52 ~llp~l~~l~~D~~-~VR~~aa~~L~~l~~~~~~~~~~~~ll---p~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~-~~ 126 (318)
..-|.+. +++..+ .+.+++...++.|+-..+.....-.+. |++.++..| ..+||..|+.++..++..-+-. .+
T Consensus 86 s~epvl~-llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~d~nk~ki 163 (550)
T KOG4224|consen 86 SNEPVLA-LLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD-GVEVQCNAVGCITNLATFDSNKVKI 163 (550)
T ss_pred hhhHHHH-HHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC-CcEEEeeehhhhhhhhccccchhhh
Confidence 3445544 445444 489999999999987666544433333 477777666 4677888899999998873222 11
Q ss_pred --hhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHH
Q psy14015 127 --EAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRN 204 (318)
Q Consensus 127 --~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~ 204 (318)
...+.|... |.+.+..++|+.+.+.|-.+-. +.+.|+.+ +..--+|.+.+
T Consensus 164 A~sGaL~pltr-LakskdirvqrnatgaLlnmTh--s~EnRr~L-------------------------V~aG~lpvLVs 215 (550)
T KOG4224|consen 164 ARSGALEPLTR-LAKSKDIRVQRNATGALLNMTH--SRENRRVL-------------------------VHAGGLPVLVS 215 (550)
T ss_pred hhccchhhhHh-hcccchhhHHHHHHHHHHHhhh--hhhhhhhh-------------------------hccCCchhhhh
Confidence 123555554 8888889999999887764422 12233332 11223799999
Q ss_pred hhcCCCHHHHHHHHHhhHHHHHHhch-h---hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCC--hhhhhHhhHH
Q psy14015 205 LCQDDTPMVRRAAAGKLGELAKVVEV-D---YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLS--QSDVEQLVMP 278 (318)
Q Consensus 205 l~~D~~~~VR~~aa~~L~~l~~~~~~-~---~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~--~~~~~~~l~p 278 (318)
++...+..||+.|..+++.++-.--. . ....+++|.+..|+.|++..|+..+..++..++..-. .+.++.--+|
T Consensus 216 ll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP 295 (550)
T KOG4224|consen 216 LLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLP 295 (550)
T ss_pred hhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCch
Confidence 99999999999999999998842111 1 1234599999999999999999999999999885321 1233344689
Q ss_pred HHHHhccccc
Q psy14015 279 TLRQCSVQIV 288 (318)
Q Consensus 279 ~l~~ll~D~~ 288 (318)
.+.+++.|+.
T Consensus 296 ~lv~Llqs~~ 305 (550)
T KOG4224|consen 296 LLVELLQSPM 305 (550)
T ss_pred HHHHHHhCcc
Confidence 9999998876
No 47
>KOG1824|consensus
Probab=98.37 E-value=4.8e-05 Score=75.91 Aligned_cols=267 Identities=15% Similarity=0.101 Sum_probs=151.3
Q ss_pred CCCCchHHHHHHHhcCcc--HHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcc
Q psy14015 9 DDSLYPIAVLIDELKNED--VQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGP 85 (318)
Q Consensus 9 ~~~l~~i~~l~~~l~~~~--~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~ 85 (318)
+++=.-..+++..++++. ..+|.=+.-.|++++...+.- -..++-..+.+......| |+.+|+-+||.++- |
T Consensus 813 ~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s-~~~e~~~~iieaf~sp~edvksAAs~ALGsl~v--g-- 887 (1233)
T KOG1824|consen 813 QKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLS-PQNELKDTIIEAFNSPSEDVKSAASYALGSLAV--G-- 887 (1233)
T ss_pred ccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCC-cchhhHHHHHHHcCCChHHHHHHHHHHhhhhhc--C--
Confidence 334444566777777444 456677788888887654322 234455566666676666 99999999998863 2
Q ss_pred cchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh---hHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCc
Q psy14015 86 EYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP---HDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA 162 (318)
Q Consensus 86 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~ 162 (318)
..+..+|.+...... ++.=..--+.++.++....+. ....+.|+.++.+-++......|...++.+|+++-.-++
T Consensus 888 -nl~~yLpfil~qi~s-qpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epe 965 (1233)
T KOG1824|consen 888 -NLPKYLPFILEQIES-QPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPE 965 (1233)
T ss_pred -chHhHHHHHHHHHhc-chHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChH
Confidence 234455544333221 111122233334333332211 233445777776666666666777777777776543332
Q ss_pred chHHHHHHHHHhhccCCCcccccchhhc-----------CccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch-
Q psy14015 163 GVKAELRSHFRNLCQDDTPMQQGHVWEC-----------GSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV- 230 (318)
Q Consensus 163 ~~~~~l~~~~~~l~~~~~~~vR~~v~~~-----------~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~- 230 (318)
. +...+....+...+..|..+... .+...+.-+.-|+.+++|++.+||+.|...|...+.+-..
T Consensus 966 s----LlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpsl 1041 (1233)
T KOG1824|consen 966 S----LLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSL 1041 (1233)
T ss_pred H----HHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhH
Confidence 2 22233344445555544422210 1123455566788899999999999999988888764221
Q ss_pred -hhhHhhHHHHHHHhh------------------cCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccc
Q psy14015 231 -DYLKTDIIPMFVNLA------------------QDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQ 286 (318)
Q Consensus 231 -~~~~~~llp~l~~ll------------------~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D 286 (318)
.++..+++|.+..=. -|..-++|+++.+++=.+.+.+-....-...+..+..-|+|
T Consensus 1042 IrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~~dit~Fl~~~~~GL~D 1116 (1233)
T KOG1824|consen 1042 IRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDRLDITEFLNHVEDGLED 1116 (1233)
T ss_pred HHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHhhcch
Confidence 123344555443321 25566889999988877776553332233344466677777
No 48
>KOG0212|consensus
Probab=98.36 E-value=8.3e-06 Score=77.08 Aligned_cols=236 Identities=17% Similarity=0.169 Sum_probs=168.8
Q ss_pred cCccHHHHHHHHHhHHHHHHhhChHh--HhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCccc--chhccchHHhh
Q psy14015 23 KNEDVQLRLNSIKKLSTIALALGQER--TRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPE--YVHCLLPPLES 97 (318)
Q Consensus 23 ~~~~~~~R~~~~~~L~~ia~~lg~~~--~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~--~~~~llp~l~~ 97 (318)
.+.+..-|....-.+..++-.+|.+. ..+.++|=+.....|.+. ||.-+++.|..+++...+.. +.+.+...+-.
T Consensus 53 ~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~k 132 (675)
T KOG0212|consen 53 YSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCK 132 (675)
T ss_pred cCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHH
Confidence 35555556666666666666688764 234455555567788777 99999999999998765532 34667788888
Q ss_pred hccCchhHHHHHHHHHHHHHHhhCCh-hH---HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHH
Q psy14015 98 LATVEETVVRDKAVESLRLISAQHSP-HD---LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFR 173 (318)
Q Consensus 98 l~~d~~~~VR~~a~~~l~~l~~~~~~-~~---~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~ 173 (318)
+..|.+..||..| +.+..+.+-... ++ -...++|.+..-..+.++..|...++++..+...-. .
T Consensus 133 lsaDsd~~V~~~a-eLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~---~-------- 200 (675)
T KOG0212|consen 133 LSADSDQNVRGGA-ELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPD---L-------- 200 (675)
T ss_pred HhcCCccccccHH-HHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCc---H--------
Confidence 8999999998764 455555544322 11 223488888877777778888888777764432211 0
Q ss_pred hhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh--h-hHhhHHHHHHHhhcCCcH
Q psy14015 174 NLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD--Y-LKTDIIPMFVNLAQDEQD 250 (318)
Q Consensus 174 ~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~--~-~~~~llp~l~~ll~D~~~ 250 (318)
++++ ...++++-+.+++.|++.+||..+=..++++-..+..+ . ...+.++++..-+..+++
T Consensus 201 ~m~~----------------yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~ 264 (675)
T KOG0212|consen 201 EMIS----------------YLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEP 264 (675)
T ss_pred HHHh----------------cchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcH
Confidence 1111 23678899999999999999999999999888766432 1 245688999999999999
Q ss_pred HHHHHHHHHHHHHHhhCChhh--hhHhhHHHHHHhccc
Q psy14015 251 SVRLLAVEACVSIASLLSQSD--VEQLVMPTLRQCSVQ 286 (318)
Q Consensus 251 ~VR~aa~~~l~~l~~~l~~~~--~~~~l~p~l~~ll~D 286 (318)
..+..|..=|..+.+..|+.- ....++..+++|+.|
T Consensus 265 ~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~ 302 (675)
T KOG0212|consen 265 EIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSD 302 (675)
T ss_pred HHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCC
Confidence 999999999999998888763 345577788888888
No 49
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.36 E-value=2.8e-05 Score=68.59 Aligned_cols=209 Identities=15% Similarity=0.127 Sum_probs=134.0
Q ss_pred hhcC-ChHH-HHHHHHHHHcccccCcCcccch--hccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHH
Q psy14015 59 ETIY-DEDE-VLLALAEQLGTFTPNVGGPEYV--HCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLV 134 (318)
Q Consensus 59 ~l~~-D~~~-VR~~aa~~L~~l~~~~~~~~~~--~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~ 134 (318)
.+++ ..++ ++..+.-.++..+..-...+.. -..++++..++.++++.||+.|+.++..++.........+.+++.+
T Consensus 19 ~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~V 98 (254)
T PF04826_consen 19 CLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQV 98 (254)
T ss_pred HHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Confidence 4444 3445 8888888888776432222222 2377899999999999999999999998887654433444567777
Q ss_pred HHhhcCC--CchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHH
Q psy14015 135 QRLASGD--WFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPM 212 (318)
Q Consensus 135 ~~l~~d~--~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~ 212 (318)
++...+. +..+..++..+|..+. +.......+ ...+|.|..++...+..
T Consensus 99 c~~~~s~~lns~~Q~agLrlL~nLt--v~~~~~~~l---------------------------~~~i~~ll~LL~~G~~~ 149 (254)
T PF04826_consen 99 CEETVSSPLNSEVQLAGLRLLTNLT--VTNDYHHML---------------------------ANYIPDLLSLLSSGSEK 149 (254)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHccC--CCcchhhhH---------------------------HhhHHHHHHHHHcCChH
Confidence 6644332 3455666666666442 122111111 22467778888888889
Q ss_pred HHHHHHHhhHHHHHH--hchhhhHhhHHHHHHHhhcCC-cHHHHHHHHHHHHHHHhhCChhhh--------h--------
Q psy14015 213 VRRAAAGKLGELAKV--VEVDYLKTDIIPMFVNLAQDE-QDSVRLLAVEACVSIASLLSQSDV--------E-------- 273 (318)
Q Consensus 213 VR~~aa~~L~~l~~~--~~~~~~~~~llp~l~~ll~D~-~~~VR~aa~~~l~~l~~~l~~~~~--------~-------- 273 (318)
+|..+.+.|..++.. +..+.+....++.|..+.+.. ...+-..+..-+.++...+.++.. .
T Consensus 150 ~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~ 229 (254)
T PF04826_consen 150 TKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFG 229 (254)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHc
Confidence 999999988888864 234444455667777777665 566666677777888777766411 1
Q ss_pred --HhhHHHHHHhccccccccccCCCCCCchhhHHh
Q psy14015 274 --QLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVI 306 (318)
Q Consensus 274 --~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i 306 (318)
+.+..-+..+... ++++||..||
T Consensus 230 e~~~~~~~l~~l~~h----------~d~ev~~~v~ 254 (254)
T PF04826_consen 230 ESSQLAKKLQALANH----------PDPEVKEQVI 254 (254)
T ss_pred cHHHHHHHHHHHHcC----------CCHHHhhhcC
Confidence 1133344555566 8999998875
No 50
>KOG0915|consensus
Probab=98.35 E-value=1.1e-05 Score=83.84 Aligned_cols=223 Identities=17% Similarity=0.188 Sum_probs=151.0
Q ss_pred HHHHhHHHHHHhhChHhHhhchhhhhhhhcCC-hHH-HHHHHHHHHcccccCcCc--ccchhccchHHhhhccCchhHHH
Q psy14015 32 NSIKKLSTIALALGQERTRGELIPFLTETIYD-EDE-VLLALAEQLGTFTPNVGG--PEYVHCLLPPLESLATVEETVVR 107 (318)
Q Consensus 32 ~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D-~~~-VR~~aa~~L~~l~~~~~~--~~~~~~llp~l~~l~~d~~~~VR 107 (318)
..-+.|..+|+.+|+.+.. ..|+ ++... ..| -|+.+|-.++.++..-|. +-+...++|-|.++--||+..|+
T Consensus 940 sTYKELc~LASdl~qPdLV---YKFM-~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq 1015 (1702)
T KOG0915|consen 940 STYKELCNLASDLGQPDLV---YKFM-QLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQ 1015 (1702)
T ss_pred hHHHHHHHHHhhcCChHHH---HHHH-HHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHH
Confidence 4555666667777765332 2233 56655 568 999999999999876543 23556699999999999999998
Q ss_pred HHHHHHHHHHHhhCChhHHhhhHHHHHHHh---hcCCCchhhhhhhhhhhhhccccCcc-hHHHHHHHHHhhccCCCccc
Q psy14015 108 DKAVESLRLISAQHSPHDLEAHFVPLVQRL---ASGDWFTSRTSACGLFSVCYPRVTAG-VKAELRSHFRNLCQDDTPMQ 183 (318)
Q Consensus 108 ~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l---~~d~~~~vR~~a~~~l~~~~~~~~~~-~~~~l~~~~~~l~~~~~~~v 183 (318)
.+-..+-..+..- ++..+.+++-.++.+| +.+..|+||.++|-.+..++.+-... +..++
T Consensus 1016 ~aM~sIW~~Li~D-~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~l--------------- 1079 (1702)
T KOG0915|consen 1016 DAMTSIWNALITD-SKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKL--------------- 1079 (1702)
T ss_pred HHHHHHHHHhccC-hHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHH---------------
Confidence 8766555555432 2333444444455554 46788999999999887665542211 11111
Q ss_pred ccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhh---HHHHHHhc-------hhhhHhhHHHHHH-HhhcCCcHHH
Q psy14015 184 QGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKL---GELAKVVE-------VDYLKTDIIPMFV-NLAQDEQDSV 252 (318)
Q Consensus 184 R~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L---~~l~~~~~-------~~~~~~~llp~l~-~ll~D~~~~V 252 (318)
.++...+.....|-...||+++-... ++++-.++ ...+...++|++- .-.-.....|
T Consensus 1080 ------------pelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~ev 1147 (1702)
T KOG0915|consen 1080 ------------PELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEV 1147 (1702)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHH
Confidence 34556667777788899998765544 44443332 2345677899664 3444778899
Q ss_pred HHHHHHHHHHHHhhCChh--hhhHhhHHHHHHhccc
Q psy14015 253 RLLAVEACVSIASLLSQS--DVEQLVMPTLRQCSVQ 286 (318)
Q Consensus 253 R~aa~~~l~~l~~~l~~~--~~~~~l~p~l~~ll~D 286 (318)
|+.+...+..+++.-|+. -+...++|.+.....-
T Consensus 1148 r~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~ 1183 (1702)
T KOG0915|consen 1148 RRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSE 1183 (1702)
T ss_pred HHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccc
Confidence 999999999999988885 3556799999988876
No 51
>KOG0915|consensus
Probab=98.35 E-value=3.6e-05 Score=80.04 Aligned_cols=263 Identities=16% Similarity=0.145 Sum_probs=161.7
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhc---hhhhhhhhcCChHH-HHHHHHHHHccccc---CcC----
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGE---LIPFLTETIYDEDE-VLLALAEQLGTFTP---NVG---- 83 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~---llp~l~~l~~D~~~-VR~~aa~~L~~l~~---~~~---- 83 (318)
+..++.++-+..|.+|.+++-+|..+..-=..+...+. +.-.+-+..+|-.| ||.++-+....+.+ ..+
T Consensus 1041 l~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~ 1120 (1702)
T KOG0915|consen 1041 LDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTN 1120 (1702)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 45677889999999999999999998643222222232 22233355677677 99876555443333 222
Q ss_pred ---cccchhccchHHhh-hccCchhHHHHHHHHHHHHHHhhCChhH--HhhhHHHHHHHhhcCCCchhh-hhhhhhhhhh
Q psy14015 84 ---GPEYVHCLLPPLES-LATVEETVVRDKAVESLRLISAQHSPHD--LEAHFVPLVQRLASGDWFTSR-TSACGLFSVC 156 (318)
Q Consensus 84 ---~~~~~~~llp~l~~-l~~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~ilp~~~~l~~d~~~~vR-~~a~~~l~~~ 156 (318)
++.....++|.+.. =....-++||..++..+..++...+.+- ....++|.+.+....-+..|= +.++.+.+
T Consensus 1121 ~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~-- 1198 (1702)
T KOG0915|consen 1121 GAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLIN-- 1198 (1702)
T ss_pred cccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhh--
Confidence 34566778887633 2336789999999999999999887743 223367766665443222211 12222110
Q ss_pred ccccCcchHHHHHHHHHhhccCCCcccc--cchhh-cCccchHHHHHHHHHhhcCCC-HHHHHHHHHhhHHHHHHhchhh
Q psy14015 157 YPRVTAGVKAELRSHFRNLCQDDTPMQQ--GHVWE-CGSGVKAELRSHFRNLCQDDT-PMVRRAAAGKLGELAKVVEVDY 232 (318)
Q Consensus 157 ~~~~~~~~~~~l~~~~~~l~~~~~~~vR--~~v~~-~~~~~~~~ll~~l~~l~~D~~-~~VR~~aa~~L~~l~~~~~~~~ 232 (318)
...+..+..+.-+....|+.- .+|.. +....-++++|.+.++..-.. -.-|-.|+.=+.-++..+|.|-
T Consensus 1199 -------~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~em 1271 (1702)
T KOG0915|consen 1199 -------IETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEM 1271 (1702)
T ss_pred -------hHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhcccc
Confidence 111111112111111111100 00100 001245678888888877554 4567777777777887777652
Q ss_pred --hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccc
Q psy14015 233 --LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQ 286 (318)
Q Consensus 233 --~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D 286 (318)
...+++-++....+|.+..||++++.+++-++..=.++++++.+.-.+...+.+
T Consensus 1272 tP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k 1327 (1702)
T KOG0915|consen 1272 TPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGK 1327 (1702)
T ss_pred CcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhcc
Confidence 345688888888899999999999999999998877777777777777777776
No 52
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.35 E-value=2.4e-05 Score=74.82 Aligned_cols=231 Identities=13% Similarity=0.135 Sum_probs=155.4
Q ss_pred HHHHHhcCccHHHHHHHHHhHHHHHHh----hChHhHhhchhhhhhhhcCChHHHHHHHHHHHcccccCcCcccchhccc
Q psy14015 17 VLIDELKNEDVQLRLNSIKKLSTIALA----LGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLL 92 (318)
Q Consensus 17 ~l~~~l~~~~~~~R~~~~~~L~~ia~~----lg~~~~~~~llp~l~~l~~D~~~VR~~aa~~L~~l~~~~~~~~~~~~ll 92 (318)
.+.--|++..-++-.+.+.-++.|+.- +|+..+.--....+..+-.-+.++|++|.+.++-+++.+|.++ ++
T Consensus 692 ~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqd----vL 767 (975)
T COG5181 692 SLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQD----VL 767 (975)
T ss_pred cccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHH----HH
Confidence 333445566666666888888888743 4444343334444444445577799999999999999888754 55
Q ss_pred hHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHH
Q psy14015 93 PPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHF 172 (318)
Q Consensus 93 p~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~ 172 (318)
.+|.+-++-++..-|.-..-++..++++.++- .++|.+.+=-..++..|.......+.-++.+.++
T Consensus 768 ~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf----sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~---------- 833 (975)
T COG5181 768 DILLNNLKVQERQQRVCTSVAISIVAEYCGPF----SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQ---------- 833 (975)
T ss_pred HHHHhcchHHHHHhhhhhhhhhhhhHhhcCch----hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHH----------
Confidence 56655566666666766666677777776653 3677765444456666666665555433333222
Q ss_pred HhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHh---chhhhHhhHHHHHHHhhcCCc
Q psy14015 173 RNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVV---EVDYLKTDIIPMFVNLAQDEQ 249 (318)
Q Consensus 173 ~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~---~~~~~~~~llp~l~~ll~D~~ 249 (318)
.+.| .--.+.|.+...+.|.++--|..++.-+..++-.+ |.+...-+++..+-.-.-+|+
T Consensus 834 --~s~d---------------Yvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~s 896 (975)
T COG5181 834 --ASLD---------------YVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPS 896 (975)
T ss_pred --HHHH---------------HHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCC
Confidence 1111 22346788999999999999998887777776543 445555567777777778999
Q ss_pred HHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccc
Q psy14015 250 DSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQ 286 (318)
Q Consensus 250 ~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D 286 (318)
++|.+++-+++..++..+|+-....+ +.+-|-.
T Consensus 897 Phvi~~~~Eg~e~~~~~lg~g~~m~Y----v~qGLFH 929 (975)
T COG5181 897 PHVIQSFDEGMESFATVLGSGAMMKY----VQQGLFH 929 (975)
T ss_pred cHHHHHHHHHHHHHHHHhccHHHHHH----HHHhccC
Confidence 99999999999999999988765554 5555666
No 53
>KOG2137|consensus
Probab=98.35 E-value=1.5e-05 Score=77.62 Aligned_cols=237 Identities=16% Similarity=0.215 Sum_probs=162.7
Q ss_pred HHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHHHH--HHHHHHHcccccCcCcccchhccchH
Q psy14015 17 VLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVL--LALAEQLGTFTPNVGGPEYVHCLLPP 94 (318)
Q Consensus 17 ~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~VR--~~aa~~L~~l~~~~~~~~~~~~llp~ 94 (318)
..+|.+.-.++.......+.|.++-..+...-....++|.+.+.+.++.-|= .-... .+++-....++...++|.
T Consensus 277 rfLD~l~~kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~~~vp~~LP~v~---~i~~~~s~~~~~~~~~p~ 353 (700)
T KOG2137|consen 277 RFLDDLPQKDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNTKMVPIVLPLVL---LIAEGLSQNEFGPKMLPA 353 (700)
T ss_pred hhcccccccCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhccccccccccchhh---hhhhccchhhhhhhhhHH
Confidence 3445554456666678888888887777777677888888876664433221 11111 122212234456667777
Q ss_pred Hhhhcc-CchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHH
Q psy14015 95 LESLAT-VEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFR 173 (318)
Q Consensus 95 l~~l~~-d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~ 173 (318)
+....+ .....++..-++-+.-|.++.+++++.+.++|.+..-.+|....+...+...++.+...+.-
T Consensus 354 l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~----------- 422 (700)
T KOG2137|consen 354 LKPIYSASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV----------- 422 (700)
T ss_pred HHHHhccCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH-----------
Confidence 777655 44677788888888889999999999999999999989998888887777776654333221
Q ss_pred hhccCCCcccccchhhcCccchHHHHHHHHHhhc-CCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHh-hcCCcHH
Q psy14015 174 NLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ-DDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNL-AQDEQDS 251 (318)
Q Consensus 174 ~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~-D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l-l~D~~~~ 251 (318)
...++.++|.+..++- ..+..|+-+++.+++.+.+.+..-.+.+.++|++... ..||...
T Consensus 423 ------------------~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~~~dp~iv 484 (700)
T KOG2137|consen 423 ------------------PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIKTRDPAIV 484 (700)
T ss_pred ------------------HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcHHH
Confidence 1356778999987754 5679999999999999999888777788899988887 5555433
Q ss_pred HHHHHHHHHHHHHh--hCChhhhhHhhHHHHHHhcccc
Q psy14015 252 VRLLAVEACVSIAS--LLSQSDVEQLVMPTLRQCSVQI 287 (318)
Q Consensus 252 VR~aa~~~l~~l~~--~l~~~~~~~~l~p~l~~ll~D~ 287 (318)
..+......+.- .-|.+...+.++|.+..+..-+
T Consensus 485 --~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 485 --MGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred --HHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence 333343333332 2234666778999888887753
No 54
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.34 E-value=3.2e-05 Score=64.72 Aligned_cols=148 Identities=18% Similarity=0.173 Sum_probs=101.0
Q ss_pred hhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcc
Q psy14015 103 ETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPM 182 (318)
Q Consensus 103 ~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 182 (318)
++.||..++.+++.++...+. ..+..+|.+...++|+++.||..|...+..++.. +.-
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~------------------d~i-- 58 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE------------------DMI-- 58 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc------------------Cce--
Confidence 468999999999999988763 4455788888889999999999998887654321 000
Q ss_pred cccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcH-----HHHHHHH
Q psy14015 183 QQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQD-----SVRLLAV 257 (318)
Q Consensus 183 vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~-----~VR~aa~ 257 (318)
..+..++..+..++.|++++||..|...|.++...-+++.+.+.+.+.+..+.+-.++ .-+....
T Consensus 59 ----------k~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~ 128 (178)
T PF12717_consen 59 ----------KVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRK 128 (178)
T ss_pred ----------eehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHH
Confidence 1446677888888999999999999999999999876766666666666666553321 1222333
Q ss_pred HHHHHHHhhCChhhhhHhhHHHHHH
Q psy14015 258 EACVSIASLLSQSDVEQLVMPTLRQ 282 (318)
Q Consensus 258 ~~l~~l~~~l~~~~~~~~l~p~l~~ 282 (318)
..+.-+.+.+.++.....++.-+.+
T Consensus 129 ~I~~fll~~i~~d~~~~~l~~kl~~ 153 (178)
T PF12717_consen 129 KIYKFLLDFIDKDKQKESLVEKLCQ 153 (178)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 3445555666644333334443333
No 55
>KOG1060|consensus
Probab=98.32 E-value=0.00012 Score=71.90 Aligned_cols=277 Identities=15% Similarity=0.141 Sum_probs=162.4
Q ss_pred CCCCCCCCchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcC
Q psy14015 5 DSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVG 83 (318)
Q Consensus 5 ~~~~~~~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~ 83 (318)
..+||..|..|..+.+.|+|+|+.+|-.|++.|+.|--.. ...-++-.+.++..|..+ ||+.+|.+++++=. ++
T Consensus 100 EeqpdLALLSIntfQk~L~DpN~LiRasALRvlSsIRvp~----IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs-Ld 174 (968)
T KOG1060|consen 100 EEQPDLALLSINTFQKALKDPNQLIRASALRVLSSIRVPM----IAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS-LD 174 (968)
T ss_pred hcCCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHhcchhh----HHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc-CC
Confidence 3589999999999999999999999999999999983110 122345567788899998 99999999998854 23
Q ss_pred cccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcC-CCchhhhhhhhhhhhhcc-ccC
Q psy14015 84 GPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASG-DWFTSRTSACGLFSVCYP-RVT 161 (318)
Q Consensus 84 ~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d-~~~~vR~~a~~~l~~~~~-~~~ 161 (318)
. +....+..++..|+.|..+.|-.+|+.++-.++..-= +..+.-.-.+++++.| ++|.- ...+.+|-+.+. .+.
T Consensus 175 ~-e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerl--dLIHknyrklC~ll~dvdeWgQ-vvlI~mL~RYAR~~l~ 250 (968)
T KOG1060|consen 175 P-EQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERL--DLIHKNYRKLCRLLPDVDEWGQ-VVLINMLTRYARHQLP 250 (968)
T ss_pred h-hhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHH--HHhhHHHHHHHhhccchhhhhH-HHHHHHHHHHHHhcCC
Confidence 3 3344799999999999999999999988888764210 0111111122333333 23321 111111111100 000
Q ss_pred -------------------------------cchHHHHHHHHHhhccCCCcccccch----hhcCc-cchHHHHHHHHHh
Q psy14015 162 -------------------------------AGVKAELRSHFRNLCQDDTPMQQGHV----WECGS-GVKAELRSHFRNL 205 (318)
Q Consensus 162 -------------------------------~~~~~~l~~~~~~l~~~~~~~vR~~v----~~~~~-~~~~~ll~~l~~l 205 (318)
+.--..+.+....|.....|.|=..| +.+++ .....+..++..+
T Consensus 251 ~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~~i~kaLvrL 330 (968)
T KOG1060|consen 251 DPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVTKIAKALVRL 330 (968)
T ss_pred CccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHHHHHHHHHHHH
Confidence 00011111111111111111110000 01111 1123345556666
Q ss_pred hcCCCHHHHHHHHHhhHHHHHHh----c----------------------------hhhhHhhHHHHHHHhhcCCcHHHH
Q psy14015 206 CQDDTPMVRRAAAGKLGELAKVV----E----------------------------VDYLKTDIIPMFVNLAQDEQDSVR 253 (318)
Q Consensus 206 ~~D~~~~VR~~aa~~L~~l~~~~----~----------------------------~~~~~~~llp~l~~ll~D~~~~VR 253 (318)
+. ++.+|+.....++..++..- . .+.-...+++-|....+++...+-
T Consensus 331 Lr-s~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~fa 409 (968)
T KOG1060|consen 331 LR-SNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFA 409 (968)
T ss_pred Hh-cCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHH
Confidence 64 55667777777777666421 0 011235677778888888888888
Q ss_pred HHHHHHHHHHHhhCChhhhhHhhHHHHHHhcccccccccc
Q psy14015 254 LLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFC 293 (318)
Q Consensus 254 ~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~ 293 (318)
.+++.+|+.++..++. ..+.-+..|+.+++.-+..|.|
T Consensus 410 a~aV~AiGrCA~~~~s--v~~tCL~gLv~Llsshde~Vv~ 447 (968)
T KOG1060|consen 410 AAAVKAIGRCASRIGS--VTDTCLNGLVQLLSSHDELVVA 447 (968)
T ss_pred HHHHHHHHHHHHhhCc--hhhHHHHHHHHHHhcccchhHH
Confidence 8899999999987765 2345567777888774444433
No 56
>KOG2956|consensus
Probab=98.31 E-value=2.9e-05 Score=72.10 Aligned_cols=202 Identities=18% Similarity=0.252 Sum_probs=127.5
Q ss_pred CCCCCch---HHHHHHHhc-CccHHHHHHHHHhHHHHHHhhChH----hHhhchhhhhhhhcCC-hHH-HHHHHHHHHcc
Q psy14015 8 PDDSLYP---IAVLIDELK-NEDVQLRLNSIKKLSTIALALGQE----RTRGELIPFLTETIYD-EDE-VLLALAEQLGT 77 (318)
Q Consensus 8 ~~~~l~~---i~~l~~~l~-~~~~~~R~~~~~~L~~ia~~lg~~----~~~~~llp~l~~l~~D-~~~-VR~~aa~~L~~ 77 (318)
.++++.. ++.++..+. ++....|..++..|.++... |.. ....+++-.+.+.+.| .++ .|+-+.+.|.+
T Consensus 278 ~p~~~~~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e-~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ 356 (516)
T KOG2956|consen 278 TPNSVDQSALVADLLKEISGSERASERKEALSELPKMLCE-GSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLRE 356 (516)
T ss_pred CCCCcchhHHHHHHHHhccCccchhHHHHHHHHHHHHHHc-cchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHH
Confidence 3444444 566666665 44678899999999998644 322 2344666677788888 566 88999999998
Q ss_pred cccCcCcc--c-chhccchHHhhhccCchh-HHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhh
Q psy14015 78 FTPNVGGP--E-YVHCLLPPLESLATVEET-VVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLF 153 (318)
Q Consensus 78 l~~~~~~~--~-~~~~llp~l~~l~~d~~~-~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l 153 (318)
++..-... + ..-.+...|.. ..|.++ .+|.++-.++..++.+.+..-+.. +.|.+.. .|. ..-..++..+
T Consensus 357 ml~~Q~~~l~DstE~ai~K~Lea-a~ds~~~v~~~Aeed~~~~las~~P~~~I~~-i~~~Ilt--~D~--~~~~~~iKm~ 430 (516)
T KOG2956|consen 357 MLTNQPARLFDSTEIAICKVLEA-AKDSQDEVMRVAEEDCLTTLASHLPLQCIVN-ISPLILT--ADE--PRAVAVIKML 430 (516)
T ss_pred HHHhchHhhhchHHHHHHHHHHH-HhCCchhHHHHHHHHHHHHHHhhCchhHHHH-HhhHHhc--Ccc--hHHHHHHHHH
Confidence 87632111 1 11123333333 355554 556666666666666666544443 6666654 222 2223444566
Q ss_pred hhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhh
Q psy14015 154 SVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYL 233 (318)
Q Consensus 154 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~ 233 (318)
.+++.+++.+ ++.. .-..+.|.+++..+..+..||+.+..||..+...+|.
T Consensus 431 Tkl~e~l~~E---eL~~-----------------------ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~--- 481 (516)
T KOG2956|consen 431 TKLFERLSAE---ELLN-----------------------LLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGM--- 481 (516)
T ss_pred HHHHhhcCHH---HHHH-----------------------hhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhH---
Confidence 6666666532 1111 2256789999999999999999999999999999996
Q ss_pred HhhHHHHHHHhhc
Q psy14015 234 KTDIIPMFVNLAQ 246 (318)
Q Consensus 234 ~~~llp~l~~ll~ 246 (318)
+.+.|.|.+|-.
T Consensus 482 -~~mePhL~~Lt~ 493 (516)
T KOG2956|consen 482 -EEMEPHLEQLTS 493 (516)
T ss_pred -HhhhhHhhhccH
Confidence 347777777643
No 57
>KOG2259|consensus
Probab=98.29 E-value=3.7e-05 Score=74.08 Aligned_cols=224 Identities=13% Similarity=0.130 Sum_probs=135.8
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCc-Ccc-------
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNV-GGP------- 85 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~-~~~------- 85 (318)
+.-++....+.+..+|-.+++.|-.+.. |-. ..+.+..-..+++.|+++ ||++|.+.+.-++... +..
T Consensus 200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~e--g~k-L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 200 ARGLIYLEHDQDFRVRTHAVEGLLALSE--GFK-LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhcc--ccc-ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 3337777889999999999999877764 322 233455555678899888 9999988776665433 110
Q ss_pred cchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCC-----------------Cch-hhh
Q psy14015 86 EYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGD-----------------WFT-SRT 147 (318)
Q Consensus 86 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~-----------------~~~-vR~ 147 (318)
......+.-+=....|-+..||..|.+.++.+-+. +.+.+.+++- +++..+. .|. -|.
T Consensus 277 kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~v-See~i~QTLd---KKlms~lRRkr~ahkrpk~l~s~GewSsGk~ 352 (823)
T KOG2259|consen 277 KLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQV-SEEIIQQTLD---KKLMSRLRRKRTAHKRPKALYSSGEWSSGKE 352 (823)
T ss_pred hhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHh-HHHHHHHHHH---HHHhhhhhhhhhcccchHHHHhcCCcccCcc
Confidence 11111222223335788899999999999988654 2332222221 2222211 010 000
Q ss_pred h-----------------hhhhhhhhccccCcc---hHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhc
Q psy14015 148 S-----------------ACGLFSVCYPRVTAG---VKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ 207 (318)
Q Consensus 148 ~-----------------a~~~l~~~~~~~~~~---~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~ 207 (318)
. .-+..|.++..+.++ +|......+..|+.. .+.+-..-+..+..+++
T Consensus 353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s------------sP~FA~~aldfLvDMfN 420 (823)
T KOG2259|consen 353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS------------SPGFAVRALDFLVDMFN 420 (823)
T ss_pred ccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC------------CCCcHHHHHHHHHHHhc
Confidence 0 000011122222221 222222222222221 12355677899999999
Q ss_pred CCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHH
Q psy14015 208 DDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEAC 260 (318)
Q Consensus 208 D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l 260 (318)
|+-..||..|+.+|..++..+. +.++.++.+...+.|.+..||.++-+-+
T Consensus 421 DE~~~VRL~ai~aL~~Is~~l~---i~eeql~~il~~L~D~s~dvRe~l~elL 470 (823)
T KOG2259|consen 421 DEIEVVRLKAIFALTMISVHLA---IREEQLRQILESLEDRSVDVREALRELL 470 (823)
T ss_pred cHHHHHHHHHHHHHHHHHHHhe---ecHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999999999998743 3467899999999999999999875543
No 58
>KOG0212|consensus
Probab=98.27 E-value=2e-05 Score=74.57 Aligned_cols=252 Identities=15% Similarity=0.137 Sum_probs=160.0
Q ss_pred HHHHhcCccHHHHHHHHHhHHHHHHhh---ChHhHhhchhh-hhhhhcCChHH-HHHHHHHHHcccccCcCccc--chhc
Q psy14015 18 LIDELKNEDVQLRLNSIKKLSTIALAL---GQERTRGELIP-FLTETIYDEDE-VLLALAEQLGTFTPNVGGPE--YVHC 90 (318)
Q Consensus 18 l~~~l~~~~~~~R~~~~~~L~~ia~~l---g~~~~~~~llp-~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~--~~~~ 90 (318)
....+.|.-++.|..++..+-.+-+.+ |.......++. ....++..... -|++..-.+...+-.+|.+. +.+.
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~ 84 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEK 84 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHH
Confidence 445677777888888888877775542 22222233333 22233333333 55554444444433344332 3455
Q ss_pred cchHHhhhccCchhHHHHHHHHHHHHHHhhCChhH--HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHH
Q psy14015 91 LLPPLESLATVEETVVRDKAVESLRLISAQHSPHD--LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAEL 168 (318)
Q Consensus 91 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l 168 (318)
++|-....++|.+..||-.|.+++..++.....+. +.+.+...++++..|....||.+| +++..++.....+
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte----- 158 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTE----- 158 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhccc-----
Confidence 66666677789999999999999999998765543 334577777888888888887554 3333222111100
Q ss_pred HHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh--hHhhHHHHHHHhhc
Q psy14015 169 RSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY--LKTDIIPMFVNLAQ 246 (318)
Q Consensus 169 ~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~--~~~~llp~l~~ll~ 246 (318)
.. ....-+.++|.+..-..+-++..|.....-+..+-..-+-+- ...++++-+.+++.
T Consensus 159 ----------~~----------~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~Ls 218 (675)
T KOG0212|consen 159 ----------SA----------STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLS 218 (675)
T ss_pred ----------cc----------cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhc
Confidence 00 013446788888888888999999998888776655433332 25679999999999
Q ss_pred CCcHHHHHHHHHHHHHHHhhCChh--h-hhHhhHHHHHHhccccccccccCCCCCCchhhHH
Q psy14015 247 DEQDSVRLLAVEACVSIASLLSQS--D-VEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHV 305 (318)
Q Consensus 247 D~~~~VR~aa~~~l~~l~~~l~~~--~-~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~ 305 (318)
|++.+||..+=.+++++..-+..+ . .....++.+.+=+.- .+|..+..+
T Consensus 219 D~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~s----------s~~~iq~~a 270 (675)
T KOG0212|consen 219 DSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQS----------SEPEIQLKA 270 (675)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccC----------CcHHHHHHH
Confidence 999999998888888888655322 2 234466766666665 666666444
No 59
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.25 E-value=7.6e-05 Score=70.95 Aligned_cols=269 Identities=13% Similarity=0.051 Sum_probs=171.0
Q ss_pred HHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH--HHHHHHHHHcccccCcCcccchh----ccc
Q psy14015 19 IDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE--VLLALAEQLGTFTPNVGGPEYVH----CLL 92 (318)
Q Consensus 19 ~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~--VR~~aa~~L~~l~~~~~~~~~~~----~ll 92 (318)
+..|++..+..-..+.+.++.||..-=|...++.++..+....-|+++ +++.....++..+....++...+ .+.
T Consensus 100 l~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~ 179 (858)
T COG5215 100 LRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILF 179 (858)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHH
Confidence 467889999988899999999987743444677788788777766554 88888888888876554422221 133
Q ss_pred hHHhhhcc-CchhHHHHHHHHHHHHHHhh----CChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhcccc----Ccc
Q psy14015 93 PPLESLAT-VEETVVRDKAVESLRLISAQ----HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRV----TAG 163 (318)
Q Consensus 93 p~l~~l~~-d~~~~VR~~a~~~l~~l~~~----~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~----~~~ 163 (318)
-+...-.+ .++..||-+|+.+|..=+.. +..|.-.++++..+++.-++++..+...|-+.|.++..-- ..-
T Consensus 180 aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~y 259 (858)
T COG5215 180 AIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSY 259 (858)
T ss_pred HHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433 45789999999998873332 3334445567777777777777777777766666543211 100
Q ss_pred hHHHHHHHHHhhccCCCcccccc---hh---------------hcC----c------cchHHHHHHHHHhhc-------C
Q psy14015 164 VKAELRSHFRNLCQDDTPMQQGH---VW---------------ECG----S------GVKAELRSHFRNLCQ-------D 208 (318)
Q Consensus 164 ~~~~l~~~~~~l~~~~~~~vR~~---v~---------------~~~----~------~~~~~ll~~l~~l~~-------D 208 (318)
..+.++......-+....+|.-+ .| .+. + ..-+.++|.++++++ +
T Consensus 260 mE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~ 339 (858)
T COG5215 260 MENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYG 339 (858)
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 11111111111111111111100 00 000 0 123568888888874 3
Q ss_pred CCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhh---hhHhhHHHHHHhcc
Q psy14015 209 DTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD---VEQLVMPTLRQCSV 285 (318)
Q Consensus 209 ~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~---~~~~l~p~l~~ll~ 285 (318)
++|.+-++|..+|--+++..|... .+-++.++++-++.++|.-|.+++-+++.+..-=.+.. .....+|.+...-.
T Consensus 340 DdWn~smaA~sCLqlfaq~~gd~i-~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~ 418 (858)
T COG5215 340 DDWNPSMAASSCLQLFAQLKGDKI-MRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMS 418 (858)
T ss_pred cccchhhhHHHHHHHHHHHhhhHh-HHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcc
Confidence 579999999999999999988654 45588899999999999999999999888775322221 12347788888888
Q ss_pred ccc
Q psy14015 286 QIV 288 (318)
Q Consensus 286 D~~ 288 (318)
|+.
T Consensus 419 D~~ 421 (858)
T COG5215 419 DSC 421 (858)
T ss_pred cce
Confidence 833
No 60
>KOG1060|consensus
Probab=98.25 E-value=9.2e-05 Score=72.67 Aligned_cols=269 Identities=15% Similarity=0.181 Sum_probs=171.4
Q ss_pred HHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhc-CChHHHHHHHHHHHcccccCcCcccchhccchH
Q psy14015 16 AVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETI-YDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPP 94 (318)
Q Consensus 16 ~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~-~D~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~ 94 (318)
..+...|++......+.|++++-.+-.. |.+ ...+.|.+.+.. ..+.||++-+--.|-++|+. .++..=--+..
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~-G~d--vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEe--qpdLALLSInt 112 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAK-GKD--VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEE--QPDLALLSINT 112 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhc-CCc--HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhc--CCCceeeeHHH
Confidence 3455667777777778888887665432 443 567888887654 55667999999888888862 12221112345
Q ss_pred HhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHh
Q psy14015 95 LESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRN 174 (318)
Q Consensus 95 l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~ 174 (318)
++.-++|++..+|..|+..+..|=-. -+..+++-.+++...|++..||..||..++|++.- ..+.+.++.+.+..
T Consensus 113 fQk~L~DpN~LiRasALRvlSsIRvp----~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL-d~e~k~qL~e~I~~ 187 (968)
T KOG1060|consen 113 FQKALKDPNQLIRASALRVLSSIRVP----MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL-DPEQKDQLEEVIKK 187 (968)
T ss_pred HHhhhcCCcHHHHHHHHHHHHhcchh----hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC-ChhhHHHHHHHHHH
Confidence 88889999999999999888776211 12233444567788999999999999999998853 44455688888899
Q ss_pred hccCCCcccccc-hhhcCc---cchHHHHHHHHHhhc---C-CCHHHHHHHHHhhHHHHHH-h-----------------
Q psy14015 175 LCQDDTPMQQGH-VWECGS---GVKAELRSHFRNLCQ---D-DTPMVRRAAAGKLGELAKV-V----------------- 228 (318)
Q Consensus 175 l~~~~~~~vR~~-v~~~~~---~~~~~ll~~l~~l~~---D-~~~~VR~~aa~~L~~l~~~-~----------------- 228 (318)
|..|.+|.|-+. |....+ +.-+-+.+.+.++|+ | +.|. .-.++..|...|.. +
T Consensus 188 LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWg-QvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~ 266 (968)
T KOG1060|consen 188 LLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWG-QVVLINMLTRYARHQLPDPTVVDSSLEDNGRSC 266 (968)
T ss_pred HhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhh-HHHHHHHHHHHHHhcCCCccccccccccCcccc
Confidence 999988876553 222211 122233444555543 2 2232 11223333333321 0
Q ss_pred ----------ch---hhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCC
Q psy14015 229 ----------EV---DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPN 295 (318)
Q Consensus 229 ----------~~---~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~ 295 (318)
++ +.....++...+.++...++.|=.+++.+.-.++. ......+...|+++|..
T Consensus 267 ~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP----~~~~~~i~kaLvrLLrs--------- 333 (968)
T KOG1060|consen 267 NLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAP----KNQVTKIAKALVRLLRS--------- 333 (968)
T ss_pred cccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCC----HHHHHHHHHHHHHHHhc---------
Confidence 11 22234577777888888888888888777666663 22344567778888884
Q ss_pred CCCCchhhHHhhhhh
Q psy14015 296 NEFHPLELHVISATT 310 (318)
Q Consensus 296 ~~~~~Vr~~~i~~~~ 310 (318)
.++|+.-+..+++
T Consensus 334 --~~~vqyvvL~nIa 346 (968)
T KOG1060|consen 334 --NREVQYVVLQNIA 346 (968)
T ss_pred --CCcchhhhHHHHH
Confidence 7777777666654
No 61
>KOG1820|consensus
Probab=98.25 E-value=3.5e-05 Score=77.71 Aligned_cols=188 Identities=16% Similarity=0.148 Sum_probs=143.7
Q ss_pred HHHHHHhcCccHHHHHHHHHhHHHHHHhhC---hHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcc--cchh
Q psy14015 16 AVLIDELKNEDVQLRLNSIKKLSTIALALG---QERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGP--EYVH 89 (318)
Q Consensus 16 ~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg---~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~--~~~~ 89 (318)
..+...+-|++|+.|.++++.+..+...-+ .+.....+..++.-...|.+- |-..++..|..++..++.. .+..
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~ 335 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAK 335 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 456678889999999999999999975533 222334555666666778776 7788888888888776643 3455
Q ss_pred ccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHH
Q psy14015 90 CLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELR 169 (318)
Q Consensus 90 ~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~ 169 (318)
.+.|.+..-+.+.-..+|..++.++-.+++..+.. .+.+.+..++++.++..|..+..++...+...+...
T Consensus 336 ~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~----~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~----- 406 (815)
T KOG1820|consen 336 NVFPSLLDRLKEKKSELRDALLKALDAILNSTPLS----KMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKT----- 406 (815)
T ss_pred hhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHH----HHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcC-----
Confidence 68888888889999999999999999999865544 366778888899999999887777765544433110
Q ss_pred HHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh
Q psy14015 170 SHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY 232 (318)
Q Consensus 170 ~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~ 232 (318)
+. ....+.+.|.+....+|.+..||.++..+++.+...+|.+-
T Consensus 407 ------~~--------------~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~ 449 (815)
T KOG1820|consen 407 ------VE--------------KETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEV 449 (815)
T ss_pred ------cc--------------hhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHH
Confidence 00 13457889999999999999999999999999999999754
No 62
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.25 E-value=6.1e-06 Score=63.52 Aligned_cols=110 Identities=21% Similarity=0.106 Sum_probs=82.9
Q ss_pred hHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcC
Q psy14015 129 HFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQD 208 (318)
Q Consensus 129 ~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D 208 (318)
.++|.+.+++.++++.+|..++..++.+...... ....+ .....+|.+.++++|
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~-------------------------~~~~~i~~l~~~l~~ 60 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNND-NIQAV-------------------------VEAGGLPALVQLLKS 60 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHH-HHHHH-------------------------HHCCChHHHHHHHhC
Confidence 4677777777888888888888888776544221 11111 123568999999999
Q ss_pred CCHHHHHHHHHhhHHHHHHhch--hh-hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy14015 209 DTPMVRRAAAGKLGELAKVVEV--DY-LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIA 264 (318)
Q Consensus 209 ~~~~VR~~aa~~L~~l~~~~~~--~~-~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~ 264 (318)
++++||..++.+|+.++...+. +. ....++|.+.+++++++..+|..++.++..++
T Consensus 61 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 61 EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred CCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 9999999999999999975422 12 22348999999999999999999999988876
No 63
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=98.22 E-value=2.1e-06 Score=49.95 Aligned_cols=29 Identities=41% Similarity=0.518 Sum_probs=18.5
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHhhHHHHH
Q psy14015 198 LRSHFRNLCQDDTPMVRRAAAGKLGELAK 226 (318)
Q Consensus 198 ll~~l~~l~~D~~~~VR~~aa~~L~~l~~ 226 (318)
++|.+.++++|++|+||.+|+.+|+.+++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 35666666666666666666666666665
No 64
>KOG4224|consensus
Probab=98.21 E-value=2e-05 Score=71.08 Aligned_cols=223 Identities=21% Similarity=0.214 Sum_probs=142.3
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHh------hChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCc--c
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALA------LGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG--P 85 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~------lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~--~ 85 (318)
++.+...+++.+..+|.-+...++-|+-. +.+ ....++|.+..+.+|.+. |+..+..+|..++..-.. +
T Consensus 210 lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laq--aep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~e 287 (550)
T KOG4224|consen 210 LPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQ--AEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQRE 287 (550)
T ss_pred chhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHh--cccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhH
Confidence 56778899999999999999999888621 211 234599999999999888 999999999999763211 1
Q ss_pred cchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCC-hhHHhh--hHHHHHHHhhcCCCchhhhhhhhhhhhhccccCc
Q psy14015 86 EYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHS-PHDLEA--HFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA 162 (318)
Q Consensus 86 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~-~~~~~~--~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~ 162 (318)
.....-+|.+..|+.|+.--.-.+.+.++..++-+.. +..+.+ ++-|++.=|-..++..++..|...|..+.... +
T Consensus 288 iv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAass-e 366 (550)
T KOG4224|consen 288 IVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS-E 366 (550)
T ss_pred HHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh-h
Confidence 2223367899999988753333445556655654432 222222 35566655555566666666666655443211 1
Q ss_pred chHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch-hhh-HhhHHHH
Q psy14015 163 GVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV-DYL-KTDIIPM 240 (318)
Q Consensus 163 ~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~-~~~-~~~llp~ 240 (318)
..++.+ .....+|.+..++-|..-.||.-+..++..++-.-.. +.+ ..-++|+
T Consensus 367 ~n~~~i-------------------------~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~i 421 (550)
T KOG4224|consen 367 HNVSVI-------------------------RESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPI 421 (550)
T ss_pred hhhHHH-------------------------hhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcce
Confidence 111111 2234567777777787777887777777777643221 111 2237777
Q ss_pred HHHhhcCCcHHHHHHHHHHHHHHHh
Q psy14015 241 FVNLAQDEQDSVRLLAVEACVSIAS 265 (318)
Q Consensus 241 l~~ll~D~~~~VR~aa~~~l~~l~~ 265 (318)
+..+..|.+..||..++.++.+++.
T Consensus 422 LIp~t~s~s~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 422 LIPWTGSESEEVRGNAAAALINLSS 446 (550)
T ss_pred eecccCccchhhcccHHHHHHhhhh
Confidence 7777788888888888888877775
No 65
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.21 E-value=8e-05 Score=62.31 Aligned_cols=112 Identities=19% Similarity=0.185 Sum_probs=88.8
Q ss_pred cHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccCchh
Q psy14015 26 DVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEET 104 (318)
Q Consensus 26 ~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~ 104 (318)
++.+|..++..++.++...+. ..+..+|.+...+.|+++ ||+.+...|.++... |.-.....++..+..++.|+++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~ 77 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENP 77 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCH
Confidence 578999999999999877653 456678999999999888 999999999998642 2222334455666677899999
Q ss_pred HHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcC
Q psy14015 105 VVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASG 140 (318)
Q Consensus 105 ~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d 140 (318)
.||..|...+..+.....++.+.+.+.+.+..+.+.
T Consensus 78 ~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 78 EIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNC 113 (178)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCc
Confidence 999999999999999877777777777777766553
No 66
>KOG0567|consensus
Probab=98.18 E-value=2.9e-05 Score=67.24 Aligned_cols=243 Identities=20% Similarity=0.217 Sum_probs=152.8
Q ss_pred HHHHHHHhc--CccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhcc
Q psy14015 15 IAVLIDELK--NEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCL 91 (318)
Q Consensus 15 i~~l~~~l~--~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~l 91 (318)
+..+.+.|. +...+.|..+.-+|..++ |+. . +..+.+...|+++ -...++-.|++... ..-
T Consensus 5 i~~i~~~L~~~s~~l~~r~rALf~Lr~l~---~~~-~----i~~i~ka~~d~s~llkhe~ay~LgQ~~~--------~~A 68 (289)
T KOG0567|consen 5 IETIGNILVNKSQPLQNRFRALFNLRNLL---GPA-A----IKAITKAFIDDSALLKHELAYVLGQMQD--------EDA 68 (289)
T ss_pred HHHHHHHHcCccHHHHHHHHHHHhhhccC---ChH-H----HHHHHHhcccchhhhccchhhhhhhhcc--------chh
Confidence 344444453 344556777777777653 333 1 5566666656666 88888888887642 234
Q ss_pred chHHhhhccCc--hhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccc----------
Q psy14015 92 LPPLESLATVE--ETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPR---------- 159 (318)
Q Consensus 92 lp~l~~l~~d~--~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~---------- 159 (318)
+|.+..-+.|+ ++.||..|.++|..++.. ..++++.++.+|+-..+|.++-..+..+-+.
T Consensus 69 v~~l~~vl~desq~pmvRhEAaealga~~~~--------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~ 140 (289)
T KOG0567|consen 69 VPVLVEVLLDESQEPMVRHEAAEALGAIGDP--------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSS 140 (289)
T ss_pred hHHHHHHhcccccchHHHHHHHHHHHhhcch--------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccC
Confidence 56666665555 589999999999999832 2777788888888888888653333322110
Q ss_pred --cC--cc---hHHHHHHHHHhhccCCC-ccccc--chhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhc
Q psy14015 160 --VT--AG---VKAELRSHFRNLCQDDT-PMQQG--HVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE 229 (318)
Q Consensus 160 --~~--~~---~~~~l~~~~~~l~~~~~-~~vR~--~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~ 229 (318)
.+ +. ..+.+.+ ++....|.+ |...+ ....+.....+.-+..+.+-+.|++...|..++..||++-.
T Consensus 141 p~~SvdPa~p~~~ssv~~-lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s--- 216 (289)
T KOG0567|consen 141 PYISVDPAPPANLSSVHE-LRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQS--- 216 (289)
T ss_pred ccccCCCCCccccccHHH-HHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccc---
Confidence 00 00 0000000 000000000 00000 01111112346778888888889999999999999998864
Q ss_pred hhhhHhhHHHHHHHhhcCC--cHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCCCCchhhHHhh
Q psy14015 230 VDYLKTDIIPMFVNLAQDE--QDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVIS 307 (318)
Q Consensus 230 ~~~~~~~llp~l~~ll~D~--~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~ 307 (318)
..-+|.+.+.+.|. ++.||--|+++|+.++. +.-++.|.+.++| +.+-||...+.
T Consensus 217 -----~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--------e~~~~vL~e~~~D----------~~~vv~esc~v 273 (289)
T KOG0567|consen 217 -----PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--------EDCVEVLKEYLGD----------EERVVRESCEV 273 (289)
T ss_pred -----hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--------HHHHHHHHHHcCC----------cHHHHHHHHHH
Confidence 34678888777766 66899999999999882 3457889999999 99999887764
Q ss_pred h
Q psy14015 308 A 308 (318)
Q Consensus 308 ~ 308 (318)
.
T Consensus 274 a 274 (289)
T KOG0567|consen 274 A 274 (289)
T ss_pred H
Confidence 3
No 67
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.17 E-value=2.5e-06 Score=56.80 Aligned_cols=53 Identities=40% Similarity=0.476 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhHHHHHHhch--hhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHH
Q psy14015 211 PMVRRAAAGKLGELAKVVEV--DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSI 263 (318)
Q Consensus 211 ~~VR~~aa~~L~~l~~~~~~--~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l 263 (318)
|.||..++.+||.+++..+. +.....++|.+..+++|++..||.+++.+|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 78999999999987754332 234678999999999999999999999998864
No 68
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.16 E-value=9.5e-06 Score=72.56 Aligned_cols=273 Identities=13% Similarity=0.134 Sum_probs=172.5
Q ss_pred hHHHHHHHhcCccHHHHHHHHHhHHHHHHhh--ChHh--HhhchhhhhhhhcCC-hHH-HHHHHHHHHcccccCcCcc--
Q psy14015 14 PIAVLIDELKNEDVQLRLNSIKKLSTIALAL--GQER--TRGELIPFLTETIYD-EDE-VLLALAEQLGTFTPNVGGP-- 85 (318)
Q Consensus 14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~l--g~~~--~~~~llp~l~~l~~D-~~~-VR~~aa~~L~~l~~~~~~~-- 85 (318)
.++.+..+|.|++.+....+.-.+.++.+.- .|-+ ...-++|-+.+++.. +.. ..-.++.+|..+++--..+
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk 151 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK 151 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence 3677888899999999888888888876441 1111 233467777777754 334 7789999999998621111
Q ss_pred -cchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh--hHHhh-hHHHHHHHhhcCCCc--hhhhhhhhhhhhhccc
Q psy14015 86 -EYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP--HDLEA-HFVPLVQRLASGDWF--TSRTSACGLFSVCYPR 159 (318)
Q Consensus 86 -~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~~~~~-~ilp~~~~l~~d~~~--~vR~~a~~~l~~~~~~ 159 (318)
.....-+|++.+|+.+.++.||+.++-+|+.++.-.+. +.+.+ -.+.-+..++.+... .+-.++.+.|+.++..
T Consensus 152 vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRG 231 (526)
T COG5064 152 VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRG 231 (526)
T ss_pred EEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCC
Confidence 11233679999999999999999999999999876543 11111 123333344443322 3334666777777655
Q ss_pred cC----cchHHHHHHHHHhhccCCCccccc-chhhcC---c--------cchHHHHHHHHHhhcCCCHHHHHHHHHhhHH
Q psy14015 160 VT----AGVKAELRSHFRNLCQDDTPMQQG-HVWECG---S--------GVKAELRSHFRNLCQDDTPMVRRAAAGKLGE 223 (318)
Q Consensus 160 ~~----~~~~~~l~~~~~~l~~~~~~~vR~-~v~~~~---~--------~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~ 223 (318)
-. |..-+....++-+|.-..+++|-- .+|.+. + ....-..+.+.+++.+++..|..-+....|.
T Consensus 232 knP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGN 311 (526)
T COG5064 232 KNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGN 311 (526)
T ss_pred CCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcC
Confidence 43 233333334455555555554332 223211 0 0112234668888889999988888888887
Q ss_pred HHHHhchhh-----hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChh---hhhHhhHHHHHHhccccc
Q psy14015 224 LAKVVEVDY-----LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS---DVEQLVMPTLRQCSVQIV 288 (318)
Q Consensus 224 l~~~~~~~~-----~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~---~~~~~l~p~l~~ll~D~~ 288 (318)
+.- |.+. +.--.+++|..+++.|...+|+-++..|.++...-... .....++|.|..++.-..
T Consensus 312 IVT--G~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae 382 (526)
T COG5064 312 IVT--GSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAE 382 (526)
T ss_pred eee--cCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHH
Confidence 764 3221 11237899999999999999999999998876433221 123468999999887655
No 69
>KOG1820|consensus
Probab=98.14 E-value=9.8e-05 Score=74.54 Aligned_cols=200 Identities=13% Similarity=0.086 Sum_probs=153.0
Q ss_pred hChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcC---cccchhccchHHhhhccCchhHHHHHHHHHHHHHHh
Q psy14015 44 LGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVG---GPEYVHCLLPPLESLATVEETVVRDKAVESLRLISA 119 (318)
Q Consensus 44 lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~---~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~ 119 (318)
+.+.+....+-|.+..-+.+..| -|..+++.+....+.-+ .+.+...+...+.....|.+-.|-..|+.+|..++.
T Consensus 245 l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~ 324 (815)
T KOG1820|consen 245 LPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAK 324 (815)
T ss_pred CchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHH
Confidence 44556777888888888899999 99999999888776444 123334455666777899999999999999999999
Q ss_pred hCChhH--HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHH
Q psy14015 120 QHSPHD--LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAE 197 (318)
Q Consensus 120 ~~~~~~--~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ 197 (318)
.++... +...+.|.+..-+++....+|-.+...+-.++. .. .-..
T Consensus 325 ~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n--------------------s~-------------~l~~ 371 (815)
T KOG1820|consen 325 KLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN--------------------ST-------------PLSK 371 (815)
T ss_pred hcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh--------------------cc-------------cHHH
Confidence 887742 333466777766777655666555444332221 11 1256
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch----hhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhh
Q psy14015 198 LRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV----DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE 273 (318)
Q Consensus 198 ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~----~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~ 273 (318)
+.+....++.+.++.+|..+..-|.......++ ......+.|.+....+|.+..||.++.++++.+...+|...+.
T Consensus 372 ~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~ 451 (815)
T KOG1820|consen 372 MSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFK 451 (815)
T ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 789999999999999999999999999988872 2346779999999999999999999999999999999998765
Q ss_pred Hhh
Q psy14015 274 QLV 276 (318)
Q Consensus 274 ~~l 276 (318)
.+|
T Consensus 452 k~L 454 (815)
T KOG1820|consen 452 KLL 454 (815)
T ss_pred HHH
Confidence 543
No 70
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=98.11 E-value=6.1e-06 Score=48.01 Aligned_cols=30 Identities=30% Similarity=0.451 Sum_probs=27.2
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHhh
Q psy14015 237 IIPMFVNLAQDEQDSVRLLAVEACVSIASL 266 (318)
Q Consensus 237 llp~l~~ll~D~~~~VR~aa~~~l~~l~~~ 266 (318)
++|.+.++++||+|.||.+++.+++.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999999999875
No 71
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.07 E-value=0.00016 Score=68.95 Aligned_cols=243 Identities=16% Similarity=0.116 Sum_probs=158.5
Q ss_pred CCch-HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccch
Q psy14015 11 SLYP-IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYV 88 (318)
Q Consensus 11 ~l~~-i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~ 88 (318)
-+.+ +..+..-|++.....|..+++.|.+++-.- |+ .....-|-+..++.|.+- +---|...|-+- |.++..
T Consensus 300 ~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~-P~-kv~vcN~evEsLIsd~Nr~IstyAITtLLKT----Gt~e~i 373 (898)
T COG5240 300 FVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKY-PQ-KVSVCNKEVESLISDENRTISTYAITTLLKT----GTEETI 373 (898)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhC-Cc-eeeecChhHHHHhhcccccchHHHHHHHHHc----CchhhH
Confidence 3444 666777888999999999999999998553 33 234556777888888665 443344333322 456677
Q ss_pred hccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHH-hhcCCCchhhhhhhhhhhhhccccCcchHHH
Q psy14015 89 HCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQR-LASGDWFTSRTSACGLFSVCYPRVTAGVKAE 167 (318)
Q Consensus 89 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~-l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~ 167 (318)
..++..+-.+..|-.+.-+..+++++..++..++.++.. ++..+.. |++...+.-+..+++.+..++...++. +..
T Consensus 374 drLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s--~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~s-kEr 450 (898)
T COG5240 374 DRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLS--YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDS-KER 450 (898)
T ss_pred HHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHH--HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchH-HHH
Confidence 778888888888888888888899999998888775422 3333322 334445677777777777766655432 111
Q ss_pred HHHHHHhhccCCC---cccccchhhcCc------cchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHH
Q psy14015 168 LRSHFRNLCQDDT---PMQQGHVWECGS------GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDII 238 (318)
Q Consensus 168 l~~~~~~l~~~~~---~~vR~~v~~~~~------~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~ll 238 (318)
+.+.+.....|.. ..||- ...+|+ .-..++..++..+. =++..||.+|..+|.+++-+.......+.+.
T Consensus 451 aLe~LC~fIEDcey~~I~vrI-L~iLG~EgP~a~~P~~yvrhIyNR~i-LEN~ivRsaAv~aLskf~ln~~d~~~~~sv~ 528 (898)
T COG5240 451 ALEVLCTFIEDCEYHQITVRI-LGILGREGPRAKTPGKYVRHIYNRLI-LENNIVRSAAVQALSKFALNISDVVSPQSVE 528 (898)
T ss_pred HHHHHHHHHhhcchhHHHHHH-HHHhcccCCCCCCcchHHHHHHHHHH-HhhhHHHHHHHHHHHHhccCccccccHHHHH
Confidence 1121111111111 11111 001111 11244555555544 3788999999999999998877666677899
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy14015 239 PMFVNLAQDEQDSVRLLAVEACVSIA 264 (318)
Q Consensus 239 p~l~~ll~D~~~~VR~aa~~~l~~l~ 264 (318)
.++++.++|.+..||..|..++..+-
T Consensus 529 ~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 529 NALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 99999999999999999887776554
No 72
>KOG1061|consensus
Probab=98.07 E-value=4.3e-05 Score=74.88 Aligned_cols=115 Identities=15% Similarity=0.191 Sum_probs=92.6
Q ss_pred CCCCCCCCchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcC
Q psy14015 5 DSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVG 83 (318)
Q Consensus 5 ~~~~~~~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~ 83 (318)
-++|++++.-+..+++.-++++|..|-.|++..+.+ +-....+++..=+.+.+.|+++ ||+.++-...++-..-.
T Consensus 78 ~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l----~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~ 153 (734)
T KOG1061|consen 78 KGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCL----RVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP 153 (734)
T ss_pred ccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeE----eehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh
Confidence 368999999999999999999999999999998886 3233455566666678888888 99999887776644333
Q ss_pred cccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh
Q psy14015 84 GPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP 123 (318)
Q Consensus 84 ~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~ 123 (318)
.......+++.+..++.|.++.|-..|+.++..+.+.-+.
T Consensus 154 ~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 154 DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence 3345566899999999999999999999999999987653
No 73
>KOG2062|consensus
Probab=98.06 E-value=0.00015 Score=70.84 Aligned_cols=251 Identities=19% Similarity=0.168 Sum_probs=139.2
Q ss_pred HHHHHHhcCc-cHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHHHH-HHHHHHHcccccCcCcccchhccch
Q psy14015 16 AVLIDELKNE-DVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVL-LALAEQLGTFTPNVGGPEYVHCLLP 93 (318)
Q Consensus 16 ~~l~~~l~~~-~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~VR-~~aa~~L~~l~~~~~~~~~~~~llp 93 (318)
.-+...|++. +..+|-.++-.|+-.+ +|.. ..++...+.+++..++.|- .++.-.++-+- +|. ..+..+.
T Consensus 416 ~yL~~~Lk~~~~e~v~hG~cLGlGLa~--mGSa--~~eiYe~lKevLy~D~AvsGEAAgi~MGl~m--lGt--~~~eaie 487 (929)
T KOG2062|consen 416 DYLLQQLKTAENEVVRHGACLGLGLAG--MGSA--NEEIYEKLKEVLYNDSAVSGEAAGIAMGLLM--LGT--ANQEAIE 487 (929)
T ss_pred HHHHHHHHhccchhhhhhhhhhccchh--cccc--cHHHHHHHHHHHhccchhhhhHHHHhhhhHh--hCc--CcHHHHH
Confidence 3445556533 3456666666666543 3432 2455666666666555533 33333333221 111 1112222
Q ss_pred HHhhhccCch--hHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHH
Q psy14015 94 PLESLATVEE--TVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSH 171 (318)
Q Consensus 94 ~l~~l~~d~~--~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~ 171 (318)
-+.+...+++ ...|.-++.. .+.-+...+ ..-|++.+|+.|+++..|++....++..+-.-+. -+.+...
T Consensus 488 dm~~Ya~ETQHeki~RGl~vGi--aL~~ygrqe----~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn--nkair~l 559 (929)
T KOG2062|consen 488 DMLTYAQETQHEKIIRGLAVGI--ALVVYGRQE----DADPLIKELLRDKDPILRYGGMYTLALAYVGTGN--NKAIRRL 559 (929)
T ss_pred HHHHHhhhhhHHHHHHHHHHhH--HHHHhhhhh----hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc--hhhHHHh
Confidence 2333344443 3334444322 333333222 3667788899999888998775555433322211 1111111
Q ss_pred HHhhccCCCcccccc-hhhcCc---cchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcC
Q psy14015 172 FRNLCQDDTPMQQGH-VWECGS---GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQD 247 (318)
Q Consensus 172 ~~~l~~~~~~~vR~~-v~~~~~---~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D 247 (318)
+.--.+|.+..||+. |..+|= ...+.+...+.-|...-|++||..+|.+||-.|..-|. .+.+..+..+.+|
T Consensus 560 Lh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~----~eAi~lLepl~~D 635 (929)
T KOG2062|consen 560 LHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL----KEAINLLEPLTSD 635 (929)
T ss_pred hcccccccchHHHHHHHHHheeeEecChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc----HHHHHHHhhhhcC
Confidence 222245666777774 444442 11233344444455567899999999999988876665 4578889999999
Q ss_pred CcHHHHHHHHHHHHHHHhhCChhhh--hHhhHHHHHHhccc
Q psy14015 248 EQDSVRLLAVEACVSIASLLSQSDV--EQLVMPTLRQCSVQ 286 (318)
Q Consensus 248 ~~~~VR~aa~~~l~~l~~~l~~~~~--~~~l~p~l~~ll~D 286 (318)
|..-||+.|+-+++-+.-...+..+ ...+...+.+...|
T Consensus 636 ~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~d 676 (929)
T KOG2062|consen 636 PVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVIND 676 (929)
T ss_pred hHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhh
Confidence 9999999999888777654444322 12355666777777
No 74
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.06 E-value=2.3e-05 Score=60.27 Aligned_cols=101 Identities=19% Similarity=0.090 Sum_probs=80.8
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHh---chhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChh--
Q psy14015 196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVV---EVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS-- 270 (318)
Q Consensus 196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~---~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~-- 270 (318)
..+++.+.++++|.++.+|..++.+++.++... ....+...++|.+..+++|+++.||..++.++.+++...+..
T Consensus 6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence 447899999999999999999999999999642 122334479999999999999999999999999999765331
Q ss_pred hhh-HhhHHHHHHhccccccccccCCCCCCchhhHHh
Q psy14015 271 DVE-QLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVI 306 (318)
Q Consensus 271 ~~~-~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i 306 (318)
... .-++|.+..++.+ .+..||..+.
T Consensus 86 ~~~~~g~l~~l~~~l~~----------~~~~~~~~a~ 112 (120)
T cd00020 86 IVLEAGGVPKLVNLLDS----------SNEDIQKNAT 112 (120)
T ss_pred HHHHCCChHHHHHHHhc----------CCHHHHHHHH
Confidence 122 3489999999999 7777776665
No 75
>KOG1059|consensus
Probab=98.05 E-value=9.7e-05 Score=71.88 Aligned_cols=92 Identities=14% Similarity=0.095 Sum_probs=66.6
Q ss_pred HhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHh
Q psy14015 49 TRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLE 127 (318)
Q Consensus 49 ~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~ 127 (318)
..-.|-+-+-.++....+ ||+-+.-.|.++. +..++....-+|-|.+-+.|+++.|..+|+..+++++..-+.. +.
T Consensus 141 LARDLa~Dv~tLL~sskpYvRKkAIl~lykvF--LkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn-yL 217 (877)
T KOG1059|consen 141 LARDLADDVFTLLNSSKPYVRKKAILLLYKVF--LKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN-YL 217 (877)
T ss_pred hhHHHHHHHHHHHhcCchHHHHHHHHHHHHHH--HhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc-cc
Confidence 344566666678888888 9988888777663 3456666777788888899999999999999999999876543 22
Q ss_pred hhHHHHHHHhhcC--CCch
Q psy14015 128 AHFVPLVQRLASG--DWFT 144 (318)
Q Consensus 128 ~~ilp~~~~l~~d--~~~~ 144 (318)
.+-|.+-+++.+ .+|.
T Consensus 218 -~LAP~ffkllttSsNNWm 235 (877)
T KOG1059|consen 218 -QLAPLFYKLLVTSSNNWV 235 (877)
T ss_pred -cccHHHHHHHhccCCCee
Confidence 266777776654 3463
No 76
>KOG2032|consensus
Probab=97.97 E-value=0.00026 Score=66.36 Aligned_cols=136 Identities=17% Similarity=0.143 Sum_probs=93.7
Q ss_pred cCccHHHHHHHHHhHHHHHHhhChHhHh-----hchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcc---cchhccch
Q psy14015 23 KNEDVQLRLNSIKKLSTIALALGQERTR-----GELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGP---EYVHCLLP 93 (318)
Q Consensus 23 ~~~~~~~R~~~~~~L~~ia~~lg~~~~~-----~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~---~~~~~llp 93 (318)
.++-+..|..-+..+.++. ++.... ..++-.+..-..|++. +|.-+++.|++.+...... .....+-.
T Consensus 227 ts~~~~~ritd~Af~ael~---~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~lda 303 (533)
T KOG2032|consen 227 TSEKENGRITDIAFFAELK---RPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDA 303 (533)
T ss_pred chhcccchHHHHHHHHHHh---CcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHH
Confidence 3444566777776666663 222111 1222233344567766 9999999999998753321 12233445
Q ss_pred HHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHH---hhcCCCchhhhhhhhhhhhhccccC
Q psy14015 94 PLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQR---LASGDWFTSRTSACGLFSVCYPRVT 161 (318)
Q Consensus 94 ~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~---l~~d~~~~vR~~a~~~l~~~~~~~~ 161 (318)
++..|..+.+.+|--.++.+|..+.+.....++..+++++..+ +..|....+|.+|..++|.+....+
T Consensus 304 ii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g 374 (533)
T KOG2032|consen 304 IIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAG 374 (533)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcC
Confidence 6788888888999999999999999998888888887776654 6777888999999999886654444
No 77
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.96 E-value=0.00034 Score=66.70 Aligned_cols=223 Identities=19% Similarity=0.152 Sum_probs=141.4
Q ss_pred HHHHHHHhcCc-cHHHHHHHHHhHHHHHHhh----ChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcC---cc
Q psy14015 15 IAVLIDELKNE-DVQLRLNSIKKLSTIALAL----GQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVG---GP 85 (318)
Q Consensus 15 i~~l~~~l~~~-~~~~R~~~~~~L~~ia~~l----g~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~---~~ 85 (318)
++..+..++.+ +.-+|+.+.+.|..-+.++ -.|..+++++....+.-+-+++ +..++---|.++-..-. ..
T Consensus 179 ~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ 258 (858)
T COG5215 179 FAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQS 258 (858)
T ss_pred HHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566544 4569999999998865443 3344566666666655555554 77666555544432100 11
Q ss_pred cchhccchHHhhhccCchhHHHHHHHHHHHHHHhh----------CCh--h-------HHhhhHHHHHHHhhc-------
Q psy14015 86 EYVHCLLPPLESLATVEETVVRDKAVESLRLISAQ----------HSP--H-------DLEAHFVPLVQRLAS------- 139 (318)
Q Consensus 86 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~----------~~~--~-------~~~~~ilp~~~~l~~------- 139 (318)
...+.+..+.-+..+++++.|...|++--..+++. +++ . .....++|-+.+|+.
T Consensus 259 ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~ 338 (858)
T COG5215 259 YMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYY 338 (858)
T ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 22233445556667899999998888876555542 110 0 011236777776653
Q ss_pred CCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHH
Q psy14015 140 GDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAG 219 (318)
Q Consensus 140 d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~ 219 (318)
++.|.+-++|...| +.|.++++|- .-..++....+-.+.++|.-|.+++.
T Consensus 339 ~DdWn~smaA~sCL----------------qlfaq~~gd~--------------i~~pVl~FvEqni~~~~w~nreaavm 388 (858)
T COG5215 339 GDDWNPSMAASSCL----------------QLFAQLKGDK--------------IMRPVLGFVEQNIRSESWANREAAVM 388 (858)
T ss_pred ccccchhhhHHHHH----------------HHHHHHhhhH--------------hHHHHHHHHHHhccCchhhhHHHHHH
Confidence 24576666654433 3455655543 22334555566678999999999999
Q ss_pred hhHHHHHHhchh---hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhC
Q psy14015 220 KLGELAKVVEVD---YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLL 267 (318)
Q Consensus 220 ~L~~l~~~~~~~---~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l 267 (318)
+||.+...-... .+....+|.+.++..|+.-+|...++.+++.++..+
T Consensus 389 AfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v 439 (858)
T COG5215 389 AFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV 439 (858)
T ss_pred HhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH
Confidence 999988632211 345678999999999999999999999999998655
No 78
>KOG4653|consensus
Probab=97.95 E-value=0.00023 Score=70.61 Aligned_cols=210 Identities=14% Similarity=0.087 Sum_probs=141.1
Q ss_pred hhhcCChHH-HHHHHHHHHcccccCcC--cccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHH
Q psy14015 58 TETIYDEDE-VLLALAEQLGTFTPNVG--GPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLV 134 (318)
Q Consensus 58 ~~l~~D~~~-VR~~aa~~L~~l~~~~~--~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~ 134 (318)
...++|+.. +|..+...|.++.+.=. .-...+.++.+....++|++..|--.|+..+..+++..++ .++|.+
T Consensus 733 i~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e-----~il~dL 807 (982)
T KOG4653|consen 733 ISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE-----DILPDL 807 (982)
T ss_pred HHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch-----hhHHHH
Confidence 345566665 99999999998876211 1223466888999999999999999999988888877544 366666
Q ss_pred HH-hhcCC---CchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCC
Q psy14015 135 QR-LASGD---WFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDT 210 (318)
Q Consensus 135 ~~-l~~d~---~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~ 210 (318)
.+ +.+.. ....|.-.-+.+.+++.+.++-+. ...+-++..|+....|++
T Consensus 808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~---------------------------~y~~~Li~tfl~gvrepd 860 (982)
T KOG4653|consen 808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVF---------------------------KYKAVLINTFLSGVREPD 860 (982)
T ss_pred HHHHHhcccCCCccceehHHHHHHHHHHHhccHHH---------------------------HHHHHHHHHHHHhcCCch
Confidence 55 33221 123343333444444433332111 133567889999999999
Q ss_pred HHHHHHHHHhhHHHHHHhc---hhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhcccc
Q psy14015 211 PMVRRAAAGKLGELAKVVE---VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQI 287 (318)
Q Consensus 211 ~~VR~~aa~~L~~l~~~~~---~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~ 287 (318)
.+-|..+..+||.+++... .+++.+.+--++.-.-.|.+.-||++|+..+..+....| ..++|++...+.|.
T Consensus 861 ~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg-----~dlLpilr~~l~Dl 935 (982)
T KOG4653|consen 861 HEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTG-----EDLLPILRLLLIDL 935 (982)
T ss_pred HHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccc-----hhhHHHHHHHHHHH
Confidence 9999999999999998653 566655554455555679999999999999999988776 45778777777775
Q ss_pred cc---ccccCCCCCCchhhHH
Q psy14015 288 VD---HKFCPNNEFHPLELHV 305 (318)
Q Consensus 288 ~~---~~~~~~~~~~~Vr~~~ 305 (318)
.. +..|+-. +..+|+.+
T Consensus 936 ~~tl~~~vr~~~-dd~~klha 955 (982)
T KOG4653|consen 936 DETLLSYVRQHD-DDGLKLHA 955 (982)
T ss_pred HHHHHHHHhcCc-hhHHHHHH
Confidence 52 3344322 33345444
No 79
>KOG1062|consensus
Probab=97.95 E-value=0.00043 Score=68.24 Aligned_cols=118 Identities=15% Similarity=0.166 Sum_probs=85.0
Q ss_pred HHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchH
Q psy14015 16 AVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPP 94 (318)
Q Consensus 16 ~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~ 94 (318)
..+...|++.+-.+=-.|...|+.+ +++| +...|.|-+.++++..++ ||+-|+-...++.. ..++..+.+++-
T Consensus 110 NslknDL~s~nq~vVglAL~alg~i---~s~E-mardlapeVe~Ll~~~~~~irKKA~Lca~r~ir--K~P~l~e~f~~~ 183 (866)
T KOG1062|consen 110 NSLKNDLNSSNQYVVGLALCALGNI---CSPE-MARDLAPEVERLLQHRDPYIRKKAALCAVRFIR--KVPDLVEHFVIA 183 (866)
T ss_pred HHHHhhccCCCeeehHHHHHHhhcc---CCHH-HhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHH--cCchHHHHhhHH
Confidence 3455778888876644444444443 5666 678899999999999888 99998888887765 345667788888
Q ss_pred HhhhccCchhHHHHHHHHHHHHHHhhCCh-----hHHhhhHHHHHHHhhc
Q psy14015 95 LESLATVEETVVRDKAVESLRLISAQHSP-----HDLEAHFVPLVQRLAS 139 (318)
Q Consensus 95 l~~l~~d~~~~VR~~a~~~l~~l~~~~~~-----~~~~~~ilp~~~~l~~ 139 (318)
...++.+.+..|=.+++..+..+++..+. .+....++-+++++.+
T Consensus 184 ~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~ 233 (866)
T KOG1062|consen 184 FRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTN 233 (866)
T ss_pred HHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999988888888888876443 2234445555565543
No 80
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.92 E-value=0.00024 Score=68.70 Aligned_cols=49 Identities=12% Similarity=0.306 Sum_probs=29.3
Q ss_pred hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccc
Q psy14015 233 LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQ 286 (318)
Q Consensus 233 ~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D 286 (318)
+.+.++|.|..+ ....|--.+..+..++.+.|... ...++|.+..+|.+
T Consensus 269 ~~~kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L~~ 317 (556)
T PF05918_consen 269 MCEKVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLLKK 317 (556)
T ss_dssp HHHHTCCCTT---------HHHHHHHHHHHHHTT----T-HHHHHHHHHHHHHT
T ss_pred HHHHhcCChhhC----ChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHHH
Confidence 345677766666 33566677888999999988766 45566888887775
No 81
>KOG2032|consensus
Probab=97.92 E-value=0.00044 Score=64.81 Aligned_cols=244 Identities=16% Similarity=0.102 Sum_probs=144.2
Q ss_pred HHHHHHhcCccHHHHHHHHHhHHHHHHhhChHh--Hhhchhhhh-hhhcCChHH-HHHHHHHHHcccccCcCcccchhcc
Q psy14015 16 AVLIDELKNEDVQLRLNSIKKLSTIALALGQER--TRGELIPFL-TETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCL 91 (318)
Q Consensus 16 ~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~--~~~~llp~l-~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~l 91 (318)
..+.....|++...|..+++.|+..+.....+- -...++..+ ..+.++..+ |...+...|..+.+.....+...++
T Consensus 261 ~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~ 340 (533)
T KOG2032|consen 261 LSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYL 340 (533)
T ss_pred HHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhc
Confidence 344456678889999999999999987643331 122344444 456666555 9999998888877665555666677
Q ss_pred chH---HhhhccCchhHHHHHHHHHHHHHHhhCChhH---Hh----hhHHHHHHHhhcCCCchhhhhhhhhhhhhccccC
Q psy14015 92 LPP---LESLATVEETVVRDKAVESLRLISAQHSPHD---LE----AHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVT 161 (318)
Q Consensus 92 lp~---l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~---~~----~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~ 161 (318)
+++ +.++..|+++.+|.+|...++.++..-+... .. ..+.|++.. .+|+++.+-.++-..+..+++.+
T Consensus 341 l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllh-l~d~~p~va~ACr~~~~~c~p~l- 418 (533)
T KOG2032|consen 341 LNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLH-LQDPNPYVARACRSELRTCYPNL- 418 (533)
T ss_pred hhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceee-eCCCChHHHHHHHHHHHhcCchh-
Confidence 776 5667889999999999999998888765522 11 122233322 36666544433322222222222
Q ss_pred cchHHHHHHHHHhhccCCCccccc---c-hhhcCccchH---HHHHHHHHhhcCCCH-HHHHHHHHhhHHHHHHhchhh-
Q psy14015 162 AGVKAELRSHFRNLCQDDTPMQQG---H-VWECGSGVKA---ELRSHFRNLCQDDTP-MVRRAAAGKLGELAKVVEVDY- 232 (318)
Q Consensus 162 ~~~~~~l~~~~~~l~~~~~~~vR~---~-v~~~~~~~~~---~ll~~l~~l~~D~~~-~VR~~aa~~L~~l~~~~~~~~- 232 (318)
.+++....|.+......+..+. . |..+.....+ .+.....-+++ -.| .||.++..-.+.+.....++.
T Consensus 419 --~rke~~~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~-sswe~vr~aavl~t~~~vd~l~~~~c 495 (533)
T KOG2032|consen 419 --VRKELYHLFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFS-SSWEQVREAAVLKTTRSVDSLVRAAC 495 (533)
T ss_pred --HHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhhee-cchHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3445444454332111111000 0 1111100001 01111111222 345 789888888888877665442
Q ss_pred ---hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy14015 233 ---LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIA 264 (318)
Q Consensus 233 ---~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~ 264 (318)
....+...+..+.+||-++|+.++.++++-+.
T Consensus 496 ~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 496 SSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS 530 (533)
T ss_pred HHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence 23457788999999999999999999987665
No 82
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.89 E-value=0.00019 Score=64.42 Aligned_cols=261 Identities=16% Similarity=0.143 Sum_probs=166.0
Q ss_pred hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhh------chhhhhhhhcCChH--HHHHHHHHHHcccccCcCcc
Q psy14015 14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRG------ELIPFLTETIYDED--EVLLALAEQLGTFTPNVGGP 85 (318)
Q Consensus 14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~------~llp~l~~l~~D~~--~VR~~aa~~L~~l~~~~~~~ 85 (318)
.++.++..|.+.+..+|-.++..|+.||-. .+.++. .|-|.|.-+.+... .+-+.+...|..++.--..+
T Consensus 158 AVPlfiqlL~s~~~~V~eQavWALGNiAGD--S~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~ 235 (526)
T COG5064 158 AVPLFIQLLSSTEDDVREQAVWALGNIAGD--SEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPP 235 (526)
T ss_pred chHHHHHHHcCchHHHHHHHHHHhccccCC--chhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCC
Confidence 367888899999999999999999998621 111222 23344433333333 25577788889888733322
Q ss_pred c---chhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh--HHhh-hHHHHHHHhhcCCCchhhhhhhhhhhhhccc
Q psy14015 86 E---YVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH--DLEA-HFVPLVQRLASGDWFTSRTSACGLFSVCYPR 159 (318)
Q Consensus 86 ~---~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~-~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~ 159 (318)
- .....+|+|..|+...+++|-.-|.-++.++..-..+. .+.+ -+-+.+.+++..++..+..-|....|.+...
T Consensus 236 P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG 315 (526)
T COG5064 236 PDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTG 315 (526)
T ss_pred CchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeec
Confidence 2 33457899999988888888777777777776543321 1111 1344566677777666666666666655443
Q ss_pred cCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch--h-hhHhh
Q psy14015 160 VTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV--D-YLKTD 236 (318)
Q Consensus 160 ~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~--~-~~~~~ 236 (318)
-....+ . ...--.++.|..++..+..++|+.++..++.+...-.. + .+...
T Consensus 316 ~D~QTq-v-------------------------iI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~n 369 (526)
T COG5064 316 SDDQTQ-V-------------------------IINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDAN 369 (526)
T ss_pred Ccccee-h-------------------------heecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcc
Confidence 221100 0 12233578888899999999999999999988642111 1 12346
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHhhC-ChhhhhHh-----hHHHHHHhccccccccccCCCCCCchhhHHhhhh
Q psy14015 237 IIPMFVNLAQDEQDSVRLLAVEACVSIASLL-SQSDVEQL-----VMPTLRQCSVQIVDHKFCPNNEFHPLELHVISAT 309 (318)
Q Consensus 237 llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l-~~~~~~~~-----l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~ 309 (318)
++|.+.+++...++..|+-|+.++.+..... +.-+...+ .+..|+.+|. |+-|..++|.+-.++++
T Consensus 370 liPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~-------~~dNkiiev~LD~~eni 441 (526)
T COG5064 370 LIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLD-------VVDNKIIEVALDAIENI 441 (526)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHh-------ccCccchhhhHHHHHHH
Confidence 9999999999999999999999998876432 22222222 3334444443 44556888888777664
No 83
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.86 E-value=2.2e-05 Score=52.15 Aligned_cols=55 Identities=29% Similarity=0.184 Sum_probs=41.5
Q ss_pred chhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhH
Q psy14015 143 FTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLG 222 (318)
Q Consensus 143 ~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~ 222 (318)
|.+|..|+..||.+........+ ....+++|.+..+++|+++.||.+|+.+||
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~---------------------------~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg 53 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQ---------------------------PYLPELLPALIPLLQDDDDSVRAAAAWALG 53 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHH---------------------------HHHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhHhcccHHHHH---------------------------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 67899999988864333222111 133678999999999999999999999998
Q ss_pred HH
Q psy14015 223 EL 224 (318)
Q Consensus 223 ~l 224 (318)
.+
T Consensus 54 ~l 55 (55)
T PF13513_consen 54 NL 55 (55)
T ss_dssp CH
T ss_pred cC
Confidence 64
No 84
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.83 E-value=0.0009 Score=66.79 Aligned_cols=167 Identities=18% Similarity=0.234 Sum_probs=121.3
Q ss_pred hcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhh-hcCChHHHHHHHHHHHcccccCcCcccchhccchHHhhhcc
Q psy14015 22 LKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTE-TIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLAT 100 (318)
Q Consensus 22 l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~-l~~D~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~ 100 (318)
+.+.+...|..+++++-... ..|.+ ...+.|-+.+ ...++.|+++-+--.|..+++.- ++-.--.++.++.=+.
T Consensus 28 l~s~n~~~kidAmK~iIa~M-~~G~d--mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~--P~~~lLavNti~kDl~ 102 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQM-SLGED--MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLK--PELALLAVNTIQKDLQ 102 (757)
T ss_pred ccccChHHHHHHHHHHHHHH-hcCCC--hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHhhcc
Confidence 77888999999999875543 25765 4566666655 44556679999888888887632 2222223455666678
Q ss_pred CchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCC
Q psy14015 101 VEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180 (318)
Q Consensus 101 d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~ 180 (318)
|+++.+|..|+..+..+ ....+...+++.+++.++|+...||..|+-.+.+++..-. ++
T Consensus 103 d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~------------~l----- 161 (757)
T COG5096 103 DPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK------------DL----- 161 (757)
T ss_pred CCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH------------hh-----
Confidence 99999999999887765 3445666789999999999999999999998887763321 11
Q ss_pred cccccchhhcCccchHH-HHHHHHHhhcCCCHHHHHHHHHhhHHHHHH
Q psy14015 181 PMQQGHVWECGSGVKAE-LRSHFRNLCQDDTPMVRRAAAGKLGELAKV 227 (318)
Q Consensus 181 ~~vR~~v~~~~~~~~~~-ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~ 227 (318)
..+. +...+..++.|.+|.|-.+|..+|.++-.-
T Consensus 162 -------------~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 162 -------------YHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred -------------hhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 1122 466777888899999998888888887654
No 85
>KOG2137|consensus
Probab=97.82 E-value=0.00061 Score=66.71 Aligned_cols=94 Identities=19% Similarity=0.289 Sum_probs=80.8
Q ss_pred cchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhh-cCCcHHHHHHHHHHHHHHHhhCChhh
Q psy14015 193 GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLA-QDEQDSVRLLAVEACVSIASLLSQSD 271 (318)
Q Consensus 193 ~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll-~D~~~~VR~aa~~~l~~l~~~l~~~~ 271 (318)
+++++++|.+..-.+|....+...+.+.++.+++.+.-..+.+.|+|.+.++. +..+..||..++-+++.+.+.+.+-.
T Consensus 385 ~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~ 464 (700)
T KOG2137|consen 385 EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAA 464 (700)
T ss_pred HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999999999999999999999999988888899999999885 45577999999999999998888877
Q ss_pred hhHhhHHHHHHhccc
Q psy14015 272 VEQLVMPTLRQCSVQ 286 (318)
Q Consensus 272 ~~~~l~p~l~~ll~D 286 (318)
+.+.+.|++..--.+
T Consensus 465 v~d~~lpi~~~~~~~ 479 (700)
T KOG2137|consen 465 VLDELLPILKCIKTR 479 (700)
T ss_pred hHHHHHHHHHHhcCC
Confidence 777777766655343
No 86
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.79 E-value=0.005 Score=58.57 Aligned_cols=179 Identities=17% Similarity=0.150 Sum_probs=123.3
Q ss_pred cchHHhhh-ccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhh-cCCCchhhhhhhhhhhhhccccCcchHHHH
Q psy14015 91 LLPPLESL-ATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLA-SGDWFTSRTSACGLFSVCYPRVTAGVKAEL 168 (318)
Q Consensus 91 llp~l~~l-~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~-~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l 168 (318)
++.-+..+ ...+++..|..+...+..++++++.++..+.++..+.... .+.....|..+...+.++...+ +
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaL-------v 262 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKAL-------V 262 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHH-------H
Confidence 44444444 3444689999999999999999876553344444443333 3333445555555544332211 1
Q ss_pred HHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHh---------------chhhh
Q psy14015 169 RSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVV---------------EVDYL 233 (318)
Q Consensus 169 ~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~---------------~~~~~ 233 (318)
. -.. ....++...+.+++.| +.+...++++|+-+..-. -++++
T Consensus 263 ----~----R~~------------~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~ 320 (415)
T PF12460_consen 263 ----M----RGH------------PLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRF 320 (415)
T ss_pred ----H----cCC------------chHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHH
Confidence 0 000 1234567777888877 778888999888887531 13567
Q ss_pred HhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhh---HhhHHHHHHhccccccccccCCCCCCchhhHHhhh
Q psy14015 234 KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE---QLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISA 308 (318)
Q Consensus 234 ~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~---~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~ 308 (318)
...++|.+.+..+..+...|.....++..+.+.++++... ..++|.+++.|.= ++++|+...+..
T Consensus 321 F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~----------~~~~v~~s~L~t 388 (415)
T PF12460_consen 321 FTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSL----------PDADVLLSSLET 388 (415)
T ss_pred HHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCC----------CCHHHHHHHHHH
Confidence 7889999999999998889999999999999999987654 4599999999987 778888877744
No 87
>KOG1078|consensus
Probab=97.74 E-value=0.0015 Score=64.43 Aligned_cols=54 Identities=17% Similarity=0.113 Sum_probs=38.3
Q ss_pred HHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCCCCchhhHHh
Q psy14015 241 FVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVI 306 (318)
Q Consensus 241 l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i 306 (318)
..+..-=.+..||.+++.++.+++ .+.+...+.+.-.+.+|+.| .+.+||-.+.
T Consensus 471 iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D----------~DdevRdrAt 524 (865)
T KOG1078|consen 471 IYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLND----------SDDEVRDRAT 524 (865)
T ss_pred HhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcC----------chHHHHHHHH
Confidence 334444456788999999988888 55666666677778888888 7777776553
No 88
>KOG4653|consensus
Probab=97.73 E-value=0.0018 Score=64.47 Aligned_cols=204 Identities=19% Similarity=0.180 Sum_probs=139.3
Q ss_pred CCCCCchHHHHHHHhcCccHHHHHHHHHhHHHHHH--hhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCc
Q psy14015 8 PDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIAL--ALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG 84 (318)
Q Consensus 8 ~~~~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~--~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~ 84 (318)
......|....+..+.|+.+..|-.++..|..+.. .-.+-...+.++......+.|+++ |--.+.+.+..+++.
T Consensus 722 ~s~~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev--- 798 (982)
T KOG4653|consen 722 YSVDIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV--- 798 (982)
T ss_pred ccccHHHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh---
Confidence 34455668888999999999999999999999875 212222445678888889999888 888888877777753
Q ss_pred ccchhccchHHhh-hccC---chhHHHHHHHHHHHHHHhhCCh--hHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhcc
Q psy14015 85 PEYVHCLLPPLES-LATV---EETVVRDKAVESLRLISAQHSP--HDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYP 158 (318)
Q Consensus 85 ~~~~~~llp~l~~-l~~d---~~~~VR~~a~~~l~~l~~~~~~--~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~ 158 (318)
..+.++|.+.. ..+. +..+-|...-++++.+++..++ ..+...++..+.+...|+.-..|.+++..+|.++.
T Consensus 799 --y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq 876 (982)
T KOG4653|consen 799 --YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQ 876 (982)
T ss_pred --cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHH
Confidence 34557776644 3222 1134455555888888888776 33444566677777788877889999999997765
Q ss_pred ccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHh-hcCCCHHHHHHHHHhhHHHHHHhchhhhHhhH
Q psy14015 159 RVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNL-CQDDTPMVRRAAAGKLGELAKVVEVDYLKTDI 237 (318)
Q Consensus 159 ~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l-~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~l 237 (318)
...-.+..++ -++...+..+ ..|...-||++|+.-+..+-...|. ++
T Consensus 877 ~~a~~vsd~~---------------------------~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~-----dl 924 (982)
T KOG4653|consen 877 LLAFQVSDFF---------------------------HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGE-----DL 924 (982)
T ss_pred HHhhhhhHHH---------------------------HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccch-----hh
Confidence 5442222221 2233333333 4599999999999999999988774 46
Q ss_pred HHHHHHhhcCC
Q psy14015 238 IPMFVNLAQDE 248 (318)
Q Consensus 238 lp~l~~ll~D~ 248 (318)
+|++...+.|-
T Consensus 925 Lpilr~~l~Dl 935 (982)
T KOG4653|consen 925 LPILRLLLIDL 935 (982)
T ss_pred HHHHHHHHHHH
Confidence 66665544443
No 89
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.69 E-value=0.0012 Score=65.85 Aligned_cols=109 Identities=18% Similarity=0.273 Sum_probs=82.5
Q ss_pred CCCCCCchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcc
Q psy14015 7 APDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGP 85 (318)
Q Consensus 7 ~~~~~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~ 85 (318)
.|++.+..+..+++.++|+|+.+|-.+++.++.+ +.......+++-+.++++|..+ ||+.|+-.+.++=+ ++..
T Consensus 86 ~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~-ld~~ 160 (757)
T COG5096 86 KPELALLAVNTIQKDLQDPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR-LDKD 160 (757)
T ss_pred CHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh-cCHh
Confidence 3567777788888899999999999999988885 4444667788888888888887 99988888776632 2333
Q ss_pred cchhc-cchHHhhhccCchhHHHHHHHHHHHHHHhh
Q psy14015 86 EYVHC-LLPPLESLATVEETVVRDKAVESLRLISAQ 120 (318)
Q Consensus 86 ~~~~~-llp~l~~l~~d~~~~VR~~a~~~l~~l~~~ 120 (318)
.+.+. ...++..++.|+++.|-..|+.++..+-..
T Consensus 161 l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 161 LYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred hhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 33333 566778888888888888888888887665
No 90
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.68 E-value=0.01 Score=54.13 Aligned_cols=209 Identities=17% Similarity=0.176 Sum_probs=126.9
Q ss_pred hHHHHHHHhcCccHHHHHHHHHhHHHHHHh-hChHh---HhhchhhhhhhhcCChH-HHHHHHHHHHcccccCcC----c
Q psy14015 14 PIAVLIDELKNEDVQLRLNSIKKLSTIALA-LGQER---TRGELIPFLTETIYDED-EVLLALAEQLGTFTPNVG----G 84 (318)
Q Consensus 14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~-lg~~~---~~~~llp~l~~l~~D~~-~VR~~aa~~L~~l~~~~~----~ 84 (318)
.+...++.+.+.....|..++..+..+... .-++. ....|++.+.+.++-.. +-+..+++.++-++-.+| .
T Consensus 44 ~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 44 KLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 377888999888999999999999998643 22232 34567788877776533 344556677777776666 2
Q ss_pred ccchhccchHHhhhccCch--hHHHHHHHHHHHHHHhhCC--hhHHhhhHHHHHH-----Hhhc-CC---------Cchh
Q psy14015 85 PEYVHCLLPPLESLATVEE--TVVRDKAVESLRLISAQHS--PHDLEAHFVPLVQ-----RLAS-GD---------WFTS 145 (318)
Q Consensus 85 ~~~~~~llp~l~~l~~d~~--~~VR~~a~~~l~~l~~~~~--~~~~~~~ilp~~~-----~l~~-d~---------~~~v 145 (318)
......+.|.|...+.|.. ..+|.+++.+|..++=... .+.+.. .+..+. ...+ |. +..+
T Consensus 124 ~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~-~~~~le~if~~~~~~~~~~~~~~~~~~~~~l 202 (309)
T PF05004_consen 124 EEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEE-LMESLESIFLLSILKSDGNAPVVAAEDDAAL 202 (309)
T ss_pred HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHH-HHHHHHHHHHHHhcCcCCCcccccCCCccHH
Confidence 4456678899999988875 3567788777766543322 222221 112211 1111 11 1223
Q ss_pred hhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHH
Q psy14015 146 RTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELA 225 (318)
Q Consensus 146 R~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~ 225 (318)
..+|...-+-++..++.. .+ . ...+..+|.|..+++.++.+||.+|..+++-+.
T Consensus 203 ~~aAL~aW~lLlt~~~~~---~~----~-------------------~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 203 VAAALSAWALLLTTLPDS---KL----E-------------------DLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHHHHhcCCHH---HH----H-------------------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 334433333333222211 00 0 122556899999999999999999999999887
Q ss_pred HHhch---h---hhHhhHHHHHHHhhcCCc
Q psy14015 226 KVVEV---D---YLKTDIIPMFVNLAQDEQ 249 (318)
Q Consensus 226 ~~~~~---~---~~~~~llp~l~~ll~D~~ 249 (318)
+.... + .-.+.++..+..|.+|.+
T Consensus 257 E~~~~~~~~~~~~~~~~l~~~l~~La~dS~ 286 (309)
T PF05004_consen 257 ELARDHEEDFLYEDMEELLEQLRELATDSS 286 (309)
T ss_pred HHhhcccccccccCHHHHHHHHHHHHHhcc
Confidence 65432 1 123456666677766653
No 91
>KOG1949|consensus
Probab=97.61 E-value=0.001 Score=64.89 Aligned_cols=146 Identities=18% Similarity=0.145 Sum_probs=92.9
Q ss_pred hhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhh
Q psy14015 127 EAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLC 206 (318)
Q Consensus 127 ~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~ 206 (318)
...+-|.+-+-++-++..||.+|+.+|-.+++-..+..-.+..+.+ -+.=...+.+++
T Consensus 172 ~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i----------------------~~kQf~~l~~LL 229 (1005)
T KOG1949|consen 172 YRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSI----------------------IQKQFEELYSLL 229 (1005)
T ss_pred HHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHH----------------------HHHHHHHHHHHh
Confidence 3345566666667788899999999988777665543322211111 112235567788
Q ss_pred cCCCHHHHHHHHHhhHHHHHH----hchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHH
Q psy14015 207 QDDTPMVRRAAAGKLGELAKV----VEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQ 282 (318)
Q Consensus 207 ~D~~~~VR~~aa~~L~~l~~~----~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ 282 (318)
.|+.+.||..|+..+.++... +.+..+.+-+-.++..+..|+...||.+..+++..++..=-.-...+.++|.+-.
T Consensus 230 ~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~ 309 (1005)
T KOG1949|consen 230 EDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRY 309 (1005)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcch
Confidence 888888888888777766643 2333333333346677888888888888888888777432223345678888888
Q ss_pred hccccccccccC
Q psy14015 283 CSVQIVDHKFCP 294 (318)
Q Consensus 283 ll~D~~~~~~~~ 294 (318)
++.|.+.+||.+
T Consensus 310 ~l~D~se~VRvA 321 (1005)
T KOG1949|consen 310 SLHDNSEKVRVA 321 (1005)
T ss_pred hhhccchhHHHH
Confidence 888844444443
No 92
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.60 E-value=0.0084 Score=54.61 Aligned_cols=178 Identities=16% Similarity=0.182 Sum_probs=112.8
Q ss_pred cCchhHHHHHHHHHHHHHHhh-CChhHHh---hhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhh
Q psy14015 100 TVEETVVRDKAVESLRLISAQ-HSPHDLE---AHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNL 175 (318)
Q Consensus 100 ~d~~~~VR~~a~~~l~~l~~~-~~~~~~~---~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l 175 (318)
.+.....|+.|++.+..+... +..+.+. ..++..+.+-++-....-+.-|+.+++.++-.++..
T Consensus 53 ~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g------------ 120 (309)
T PF05004_consen 53 TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAG------------ 120 (309)
T ss_pred HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCC------------
Confidence 445578899999998888744 3344332 335555555444332233344545554433222200
Q ss_pred ccCCCcccccchhhcCccchHHHHHHHHHhhcCCC--HHHHHHHHHhhHHHHHHhchh-hhHhhHHHHHHHh------hc
Q psy14015 176 CQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDT--PMVRRAAAGKLGELAKVVEVD-YLKTDIIPMFVNL------AQ 246 (318)
Q Consensus 176 ~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~--~~VR~~aa~~L~~l~~~~~~~-~~~~~llp~l~~l------l~ 246 (318)
.. .+.+.+.+.|.+.+.++|.. ..+|.+|+.+|+.++-+.|.+ .....++..+... -.
T Consensus 121 --~~-----------~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~ 187 (309)
T PF05004_consen 121 --ED-----------SEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKS 187 (309)
T ss_pred --cc-----------HHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCc
Confidence 00 01245678899999999865 578999999999877665543 1223233444411 11
Q ss_pred C---------CcHHHHHHHHHHHHHHHhhCChhhh---hHhhHHHHHHhccccccccccCCCCCCchhhHHhhhhhhh
Q psy14015 247 D---------EQDSVRLLAVEACVSIASLLSQSDV---EQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISATTLR 312 (318)
Q Consensus 247 D---------~~~~VR~aa~~~l~~l~~~l~~~~~---~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~~~~ 312 (318)
| ++..|..+|+.+-+-+...++.... .+..+|.|..+|.- .+.+||+.+-+++-|=
T Consensus 188 ~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s----------~d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 188 DGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDS----------DDVDVRIAAGEAIALL 255 (309)
T ss_pred CCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcC----------CCHHHHHHHHHHHHHH
Confidence 2 2467899999999989888877433 34588999999999 8999999999888763
No 93
>KOG2025|consensus
Probab=97.56 E-value=0.0017 Score=63.38 Aligned_cols=206 Identities=14% Similarity=0.103 Sum_probs=128.3
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHhhC--hHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhcc
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALG--QERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCL 91 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg--~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~l 91 (318)
+-.++....+.+..||...++-|..+....+ ++...+.++..+..-+.|-.+ ||..|...|..+..--+.+ .-.+
T Consensus 87 f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--e~~v 164 (892)
T KOG2025|consen 87 FYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--ECPV 164 (892)
T ss_pred HHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC--cccH
Confidence 5566677778888888888888888765322 343555566666656667666 9999988888886422222 2234
Q ss_pred chHHhhhc-cCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhh-hhhhhccccCcchHHHHH
Q psy14015 92 LPPLESLA-TVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACG-LFSVCYPRVTAGVKAELR 169 (318)
Q Consensus 92 lp~l~~l~-~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~-~l~~~~~~~~~~~~~~l~ 169 (318)
..++..++ .|++++||.+|+..+.. .+.-+|.+..-+.|.+..+|..+-. .++++
T Consensus 165 ~n~l~~liqnDpS~EVRRaaLsnI~v----------dnsTlp~IveRarDV~~anRrlvY~r~lpki------------- 221 (892)
T KOG2025|consen 165 VNLLKDLIQNDPSDEVRRAALSNISV----------DNSTLPCIVERARDVSGANRRLVYERCLPKI------------- 221 (892)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhcc----------CcccchhHHHHhhhhhHHHHHHHHHHhhhhh-------------
Confidence 45555553 57888998887754322 1235677777778877667765422 12221
Q ss_pred HHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHH-HHHHhchhhhHhhHHHHHHHhhcCC
Q psy14015 170 SHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGE-LAKVVEVDYLKTDIIPMFVNLAQDE 248 (318)
Q Consensus 170 ~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~-l~~~~~~~~~~~~llp~l~~ll~D~ 248 (318)
.++. ...+.-...+-+.++|....||.++...+.. +..+. .-.++..+.++=-.-
T Consensus 222 ----d~r~---------------lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~-----dgni~ElL~~ldvsn 277 (892)
T KOG2025|consen 222 ----DLRS---------------LSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFS-----DGNILELLERLDVSN 277 (892)
T ss_pred ----hhhh---------------hhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhc-----cccHHHHHHHhcccc
Confidence 0000 0123345667788899999999999887754 22211 123666777776666
Q ss_pred cHHHHHHHHHHHHH-HHhhCCh
Q psy14015 249 QDSVRLLAVEACVS-IASLLSQ 269 (318)
Q Consensus 249 ~~~VR~aa~~~l~~-l~~~l~~ 269 (318)
+..|+..+.+++-+ +.+.+|.
T Consensus 278 ss~vavk~lealf~~v~e~v~~ 299 (892)
T KOG2025|consen 278 SSEVAVKALEALFSGVREDVGS 299 (892)
T ss_pred chHHHHHHHHHHHHHHHHHhhh
Confidence 66888888888777 5555544
No 94
>KOG1943|consensus
Probab=97.54 E-value=0.0061 Score=62.20 Aligned_cols=237 Identities=19% Similarity=0.175 Sum_probs=147.7
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCC--hHHHHHHHHHHHcccccC-cCcccchhcc
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYD--EDEVLLALAEQLGTFTPN-VGGPEYVHCL 91 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D--~~~VR~~aa~~L~~l~~~-~~~~~~~~~l 91 (318)
|..++..++|.+-.+|=++++.++.+...+.++ ...+++.-+..+... ++.....++-.|.+++.. +--+.....+
T Consensus 343 ie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~-Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dV 421 (1133)
T KOG1943|consen 343 IEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE-LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLEDV 421 (1133)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHccCcHH-HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 667778899999999999999999999888765 445555555554433 233777888898888752 1123345567
Q ss_pred chHHhh-hccCch-------hHHHHHHHHHHHHHHhhCChhHHhh---hHHH-HHHHhhcCCCchhhhhhhhhhhhhccc
Q psy14015 92 LPPLES-LATVEE-------TVVRDKAVESLRLISAQHSPHDLEA---HFVP-LVQRLASGDWFTSRTSACGLFSVCYPR 159 (318)
Q Consensus 92 lp~l~~-l~~d~~-------~~VR~~a~~~l~~l~~~~~~~~~~~---~ilp-~~~~l~~d~~~~vR~~a~~~l~~~~~~ 159 (318)
+|++.. +.-|+. ..||.+|...+-.++...++..... .+.+ ++...+-|++..+|++|...|.+.+++
T Consensus 422 vplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR 501 (1133)
T KOG1943|consen 422 VPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGR 501 (1133)
T ss_pred HHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhcc
Confidence 887654 333333 5899999999999999888765444 1222 233456788999999999998888777
Q ss_pred cCcc-hHHHHHH------------HHHhhccCCCcccccchhhcCccchHHHHHHHHHhhc----CCCHHHHHHHHHhhH
Q psy14015 160 VTAG-VKAELRS------------HFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ----DDTPMVRRAAAGKLG 222 (318)
Q Consensus 160 ~~~~-~~~~l~~------------~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~----D~~~~VR~~aa~~L~ 222 (318)
.+.- .+-++.. .+..+|.... ....+.-|.|-.+.+ +=+..+|..++.+|.
T Consensus 502 ~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia------------~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~ 569 (1133)
T KOG1943|consen 502 QGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIA------------EFSGYREPVFNHLLTKKVCHWDVKIRELAAYALH 569 (1133)
T ss_pred CCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHH------------hhhhHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence 5532 2323221 1222221110 122333444444444 445689999999999
Q ss_pred HHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHh
Q psy14015 223 ELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIAS 265 (318)
Q Consensus 223 ~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~ 265 (318)
++...- ++......+|-+....-.++..-|-.+..+.+.+..
T Consensus 570 ~Ls~~~-pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 570 KLSLTE-PKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred HHHHhh-HHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 987653 333333444433333334445566666555555543
No 95
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.53 E-value=0.0067 Score=53.57 Aligned_cols=214 Identities=14% Similarity=0.155 Sum_probs=132.4
Q ss_pred HHHHHHHhc-CccHHHHHHHHHhHHHHHHh-hChHhHhh-chhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchh-
Q psy14015 15 IAVLIDELK-NEDVQLRLNSIKKLSTIALA-LGQERTRG-ELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVH- 89 (318)
Q Consensus 15 i~~l~~~l~-~~~~~~R~~~~~~L~~ia~~-lg~~~~~~-~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~- 89 (318)
+..++..|+ ++++.++..+.-.++..+.. ...+..++ ..++.+..++.++++ ||..+...|..++.........+
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~ 93 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKM 93 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHH
Confidence 778888888 56899999999999987654 22332322 578999999999887 99999999998876433322222
Q ss_pred ccchHHhhhccCc-hhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHH
Q psy14015 90 CLLPPLESLATVE-ETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAEL 168 (318)
Q Consensus 90 ~llp~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l 168 (318)
++-.++.....++ +..+..+++..|..+.-.-.-.......+|.+.+++...+...|..+.+.|..+... +...+++
T Consensus 94 ~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n--p~~~~~L 171 (254)
T PF04826_consen 94 YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN--PDMTREL 171 (254)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccC--HHHHHHH
Confidence 3333455554444 678888999888888633222233334677777888777777887777766543211 1111221
Q ss_pred HHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCC-CHHHHHHHHHhhHHHHHHhchhh--------h------
Q psy14015 169 RSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDD-TPMVRRAAAGKLGELAKVVEVDY--------L------ 233 (318)
Q Consensus 169 ~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~-~~~VR~~aa~~L~~l~~~~~~~~--------~------ 233 (318)
...+.++.|..+++.. ..++-..+..-+..+...+.++. .
T Consensus 172 -------------------------l~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~ 226 (254)
T PF04826_consen 172 -------------------------LSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFS 226 (254)
T ss_pred -------------------------HhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHH
Confidence 1123456677777654 45666666666666666554320 0
Q ss_pred ----HhhHHHHHHHhhcCCcHHHHHH
Q psy14015 234 ----KTDIIPMFVNLAQDEQDSVRLL 255 (318)
Q Consensus 234 ----~~~llp~l~~ll~D~~~~VR~a 255 (318)
.+.+-.-+..+..+|+++||..
T Consensus 227 ~~~e~~~~~~~l~~l~~h~d~ev~~~ 252 (254)
T PF04826_consen 227 LFGESSQLAKKLQALANHPDPEVKEQ 252 (254)
T ss_pred HHccHHHHHHHHHHHHcCCCHHHhhh
Confidence 1123334455566777777653
No 96
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.52 E-value=0.011 Score=52.47 Aligned_cols=136 Identities=19% Similarity=0.122 Sum_probs=81.6
Q ss_pred HHHHHhcCccHHHHHHHHHhHHHHHHhhChHh----HhhchhhhhhhhcCChHHHHHHHHHHHcccccC--cCcccchhc
Q psy14015 17 VLIDELKNEDVQLRLNSIKKLSTIALALGQER----TRGELIPFLTETIYDEDEVLLALAEQLGTFTPN--VGGPEYVHC 90 (318)
Q Consensus 17 ~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~----~~~~llp~l~~l~~D~~~VR~~aa~~L~~l~~~--~~~~~~~~~ 90 (318)
.+-+.|.++++.+|..++.-|+.+...+.++. ..+-+..|+..-++|...+..+ .+.+..+.+. ++.+.
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~-l~gl~~L~~~~~~~~~~---- 77 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPA-LKGLLALVKMKNFSPES---- 77 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHH-HHHHHHHHhCcCCChhh----
Confidence 45578999999999999999999988777542 3456778887777655545444 6666666531 22211
Q ss_pred cchHHhhhccC-----chhHHHHHHHHHHHHHHhhCChhH--HhhhHHHHHHHhhcCC-Cchhhhhhhhhhhhhc
Q psy14015 91 LLPPLESLATV-----EETVVRDKAVESLRLISAQHSPHD--LEAHFVPLVQRLASGD-WFTSRTSACGLFSVCY 157 (318)
Q Consensus 91 llp~l~~l~~d-----~~~~VR~~a~~~l~~l~~~~~~~~--~~~~ilp~~~~l~~d~-~~~vR~~a~~~l~~~~ 157 (318)
...++..+.+. ---..|..+.+.+..+.+....+. ....++..+.+.+.++ +++.=..+-.++..+.
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVIL 152 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 22333333322 225778888888888887754321 2234555566665553 3443334444444443
No 97
>KOG1949|consensus
Probab=97.50 E-value=0.00061 Score=66.38 Aligned_cols=145 Identities=15% Similarity=0.068 Sum_probs=90.8
Q ss_pred hHHhhhccCchhHHHHHHHHHHHHHHhhCChhH-------HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcc-h
Q psy14015 93 PPLESLATVEETVVRDKAVESLRLISAQHSPHD-------LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG-V 164 (318)
Q Consensus 93 p~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~-------~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~-~ 164 (318)
|++-.-++-++..||..|+..+..+...-+++. ..+.=...+.+|+.|+.+.+|..|+.-+.++...+ |+ .
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f-We~i 255 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKF-WEMI 255 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH-HHHc
Confidence 666666788899999999999988877665532 11112234567899999999999977666543221 11 0
Q ss_pred HHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHh
Q psy14015 165 KAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNL 244 (318)
Q Consensus 165 ~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l 244 (318)
.+. ...+-+-.++-.+..|.+..||.+....++.+..+--.-...+.++|.+..+
T Consensus 256 P~~-------------------------i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~ 310 (1005)
T KOG1949|consen 256 PPT-------------------------ILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYS 310 (1005)
T ss_pred CHH-------------------------HHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchh
Confidence 000 1112222334455666677777777777777765433333456677777777
Q ss_pred hcCCcHHHHHHHHHHHHHH
Q psy14015 245 AQDEQDSVRLLAVEACVSI 263 (318)
Q Consensus 245 l~D~~~~VR~aa~~~l~~l 263 (318)
+.|.+..||-+++.-+..+
T Consensus 311 l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 311 LHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred hhccchhHHHHHHHHHHHH
Confidence 7777777777776655443
No 98
>KOG2062|consensus
Probab=97.47 E-value=0.0034 Score=61.64 Aligned_cols=161 Identities=16% Similarity=0.131 Sum_probs=102.4
Q ss_pred hchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhh
Q psy14015 51 GELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAH 129 (318)
Q Consensus 51 ~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ 129 (318)
++.-|++.+++.|.++ .|...+-.+. ++ .+|. .....+-.+|---.+|.+++||++|+.+++-++-. .++
T Consensus 518 e~Ad~lI~el~~dkdpilR~~Gm~t~a-lA-y~GT-gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~-dp~----- 588 (929)
T KOG2062|consen 518 EDADPLIKELLRDKDPILRYGGMYTLA-LA-YVGT-GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFR-DPE----- 588 (929)
T ss_pred hhhHHHHHHHhcCCchhhhhhhHHHHH-HH-Hhcc-CchhhHHHhhcccccccchHHHHHHHHHheeeEec-Chh-----
Confidence 4567888899988888 7876554433 11 1221 11121222233336788999999999888776543 223
Q ss_pred HHHHHHHh-hcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcC
Q psy14015 130 FVPLVQRL-ASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQD 208 (318)
Q Consensus 130 ilp~~~~l-~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D 208 (318)
.+|.+.++ .++-+++||+.++..||..|..-+. ++-+..+-.+..|
T Consensus 589 ~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~---------------------------------~eAi~lLepl~~D 635 (929)
T KOG2062|consen 589 QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL---------------------------------KEAINLLEPLTSD 635 (929)
T ss_pred hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc---------------------------------HHHHHHHhhhhcC
Confidence 23333344 4455789999999999877665432 4456777778889
Q ss_pred CCHHHHHHHHHhhHHHHHHhchhh--hHhhHHHHHHHhhcCCcHHHH
Q psy14015 209 DTPMVRRAAAGKLGELAKVVEVDY--LKTDIIPMFVNLAQDEQDSVR 253 (318)
Q Consensus 209 ~~~~VR~~aa~~L~~l~~~~~~~~--~~~~llp~l~~ll~D~~~~VR 253 (318)
++.-||+.|.-+++.+.-....+. -...+...|.+...|-...+-
T Consensus 636 ~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~~ 682 (929)
T KOG2062|consen 636 PVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDGM 682 (929)
T ss_pred hHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHHH
Confidence 999999999999998876543321 123455566667777665543
No 99
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.0027 Score=60.73 Aligned_cols=86 Identities=19% Similarity=0.071 Sum_probs=65.3
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhh--hhHh
Q psy14015 198 LRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD--VEQL 275 (318)
Q Consensus 198 ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~--~~~~ 275 (318)
++..+--+....++.||...|.+||-.+..-|. +..+.++..|..|+..-||++|+-+.+-+.-...++- ....
T Consensus 587 lv~tvelLs~shN~hVR~g~AvaLGiacag~G~----~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~ 662 (926)
T COG5116 587 LVGTVELLSESHNFHVRAGVAVALGIACAGTGD----KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKR 662 (926)
T ss_pred hhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc----HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHH
Confidence 334444445567899999999999988876665 3467788999999999999999999888887666542 2345
Q ss_pred hHHHHHHhcccc
Q psy14015 276 VMPTLRQCSVQI 287 (318)
Q Consensus 276 l~p~l~~ll~D~ 287 (318)
+...+.++..|+
T Consensus 663 I~k~f~~vI~~K 674 (926)
T COG5116 663 IIKKFNRVIVDK 674 (926)
T ss_pred HHHHHHHHHhhh
Confidence 777778888773
No 100
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.40 E-value=0.0054 Score=58.36 Aligned_cols=215 Identities=16% Similarity=0.147 Sum_probs=131.6
Q ss_pred hhhhhhhhcCC-hHH-HHHHHHHHHcccccCcCcccchhccchHHhhhc-cCchhHHHHHHHHHHHHHHhhC--ChhHHh
Q psy14015 53 LIPFLTETIYD-EDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLA-TVEETVVRDKAVESLRLISAQH--SPHDLE 127 (318)
Q Consensus 53 llp~l~~l~~D-~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~-~d~~~~VR~~a~~~l~~l~~~~--~~~~~~ 127 (318)
++.-+..++.. +++ .|.++++.+..++.-....+....++..+..-. ...+...|..+++.+.-+..-+ ......
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~ 269 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA 269 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH
Confidence 44455444433 335 899999888877754433333333444333333 4556777888888877766543 112223
Q ss_pred hhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhc
Q psy14015 128 AHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ 207 (318)
Q Consensus 128 ~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~ 207 (318)
..++..+.+++.| ..+...|+..|+.+.........+ .....||- -..+.+..+++|.+.+..+
T Consensus 270 ~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~-----------~~~a~vkl---LykQR~F~~~~p~L~~~~~ 333 (415)
T PF12460_consen 270 TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNK-----------ENHANVKL---LYKQRFFTQVLPKLLEGFK 333 (415)
T ss_pred HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCc-----------cccchhhh---HHhHHHHHHHHHHHHHHHh
Confidence 3466666677776 345566666666554332110000 00000110 0001244678899999988
Q ss_pred CCCHHHHHHHHHhhHHHHHHhchhhh---HhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChh--hhhHhhHHHHHH
Q psy14015 208 DDTPMVRRAAAGKLGELAKVVEVDYL---KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS--DVEQLVMPTLRQ 282 (318)
Q Consensus 208 D~~~~VR~~aa~~L~~l~~~~~~~~~---~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~--~~~~~l~p~l~~ 282 (318)
+.+...|.+...+|+.+...+..+.+ ...++|.+.+.+.-++..+|.++.+++..+..--++- .+.+.++|.+++
T Consensus 334 ~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 334 EADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred hcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 88888999999999999998876543 4579999999999999999999999999888655221 123457776665
Q ss_pred h
Q psy14015 283 C 283 (318)
Q Consensus 283 l 283 (318)
+
T Consensus 414 l 414 (415)
T PF12460_consen 414 L 414 (415)
T ss_pred c
Confidence 4
No 101
>KOG1248|consensus
Probab=97.36 E-value=0.024 Score=58.67 Aligned_cols=243 Identities=12% Similarity=0.146 Sum_probs=151.8
Q ss_pred CCCCCCchHHHHHHHh-cCccHHHHHHHHHhHHHHHHhhChHhH----hhchhhhhhhhcCChHH-HHHHHHHHHccccc
Q psy14015 7 APDDSLYPIAVLIDEL-KNEDVQLRLNSIKKLSTIALALGQERT----RGELIPFLTETIYDEDE-VLLALAEQLGTFTP 80 (318)
Q Consensus 7 ~~~~~l~~i~~l~~~l-~~~~~~~R~~~~~~L~~ia~~lg~~~~----~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~ 80 (318)
+++..+..+-.+.... ++.+..++..+-+-|.++...-.-+.. ...+...+..-.++... ++......|..+.+
T Consensus 647 ~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~ 726 (1176)
T KOG1248|consen 647 QTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLK 726 (1176)
T ss_pred ccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 3344444433333333 455778888888888888655111111 22233333333344344 88888888888877
Q ss_pred CcCcc--cchhccchHHhhhccCchhHHHHHHHHHHHHHH--hhCCh------hHHhhhHHHHHHHhhcCCCchhhhhhh
Q psy14015 81 NVGGP--EYVHCLLPPLESLATVEETVVRDKAVESLRLIS--AQHSP------HDLEAHFVPLVQRLASGDWFTSRTSAC 150 (318)
Q Consensus 81 ~~~~~--~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~--~~~~~------~~~~~~ilp~~~~l~~d~~~~vR~~a~ 150 (318)
..+.. ++....+|-+.=+.++.+..-|..|..+|..++ ..... +...+.+++.+...+.+++.+++.+.+
T Consensus 727 ~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~I 806 (1176)
T KOG1248|consen 727 LLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDI 806 (1176)
T ss_pred hccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHH
Confidence 66522 233444453333338888888999999998888 33211 234444666665555555554444322
Q ss_pred hhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch
Q psy14015 151 GLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV 230 (318)
Q Consensus 151 ~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~ 230 (318)
-.+..++.. |..+.+ ......++..+-..+...++++|++|+.-+..++..+..
T Consensus 807 vai~~il~e------------~~~~ld--------------~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe 860 (1176)
T KOG1248|consen 807 VAITHILQE------------FKNILD--------------DETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPE 860 (1176)
T ss_pred HHHHHHHHH------------Hhcccc--------------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCH
Confidence 222222111 111111 124466777778888899999999999999999988875
Q ss_pred hhh---HhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHh
Q psy14015 231 DYL---KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQL 275 (318)
Q Consensus 231 ~~~---~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~ 275 (318)
..+ .+.++|.+..+++|....+|..+-.-+..+..-||.+..+.+
T Consensus 861 ~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~ 908 (1176)
T KOG1248|consen 861 ECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESF 908 (1176)
T ss_pred HHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhh
Confidence 533 456999999999999999999999999999999988765543
No 102
>KOG1061|consensus
Probab=97.33 E-value=0.01 Score=58.70 Aligned_cols=234 Identities=14% Similarity=0.167 Sum_probs=149.0
Q ss_pred CchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChH-HHHHHHHHHHcccccCcCcccchhc
Q psy14015 12 LYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAEQLGTFTPNVGGPEYVHC 90 (318)
Q Consensus 12 l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~-~VR~~aa~~L~~l~~~~~~~~~~~~ 90 (318)
...++.+..++.+.-...|..+++++-.- -.+|.+ ...+.|-+....+-.+ +.++-+-..+...++ +.++-.-.
T Consensus 12 k~ei~elks~l~s~~~~kr~~a~kkvIa~-Mt~G~D--vSslF~dvvk~~~T~dlelKKlvyLYl~nYa~--~~P~~a~~ 86 (734)
T KOG1061|consen 12 KGEIPELKSQLNSQSKEKRKDAVKKVIAY-MTVGKD--VSSLFPDVVKCMQTRDLELKKLVYLYLMNYAK--GKPDLAIL 86 (734)
T ss_pred hhhchHHHHHhhhhhhhhHHHHHHHHHhc-CccCcc--hHhhhHHHHhhcccCCchHHHHHHHHHHHhhc--cCchHHHh
Confidence 44567777888777777788888776332 237755 4567777777665544 588887778887765 22333333
Q ss_pred cchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHH
Q psy14015 91 LLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRS 170 (318)
Q Consensus 91 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~ 170 (318)
.++.+..=+.|+++.+|.-|+..++.+ +-..+.+++..-+.+.++|+...+|..|+-...+++..-.
T Consensus 87 avnt~~kD~~d~np~iR~lAlrtm~~l----~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~--------- 153 (734)
T KOG1061|consen 87 AVNTFLKDCEDPNPLIRALALRTMGCL----RVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP--------- 153 (734)
T ss_pred hhhhhhccCCCCCHHHHHHHhhceeeE----eehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---------
Confidence 445566667899999999998776554 3344556666667788899999999988777665543211
Q ss_pred HHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh---hhHhhHHHHHHHhhcC
Q psy14015 171 HFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD---YLKTDIIPMFVNLAQD 247 (318)
Q Consensus 171 ~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~---~~~~~llp~l~~ll~D 247 (318)
+++ ...-+++.+..+..|+++.|=.+|..+|.++.+.-... .....++..+...++.
T Consensus 154 ---~~~-----------------~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~e 213 (734)
T KOG1061|consen 154 ---DLV-----------------EDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNE 213 (734)
T ss_pred ---hhc-----------------cccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHH
Confidence 111 22457888999999999999999999999998753211 1122333444444444
Q ss_pred CcHHHHHHHHHHHHHHHhhCChhh-hhHhhHHHHHHhccc
Q psy14015 248 EQDSVRLLAVEACVSIASLLSQSD-VEQLVMPTLRQCSVQ 286 (318)
Q Consensus 248 ~~~~VR~aa~~~l~~l~~~l~~~~-~~~~l~p~l~~ll~D 286 (318)
-+.|-|. ..+..++..+.++. -.+.++..+.+.|..
T Consensus 214 c~EW~qi---~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh 250 (734)
T KOG1061|consen 214 CTEWGQI---FILDCLAEYVPKDSREAEDICERLTPRLQH 250 (734)
T ss_pred hhhhhHH---HHHHHHHhcCCCCchhHHHHHHHhhhhhcc
Confidence 4444444 34455566665543 223455566666665
No 103
>KOG2956|consensus
Probab=97.30 E-value=0.0097 Score=55.77 Aligned_cols=175 Identities=15% Similarity=0.104 Sum_probs=108.0
Q ss_pred HHHHHHHHHcccccCcCc----ccchhccchHHhhhccC-chhHHHHHHHHHHHHHHhhCCh--hHHhhhHHHHHHHhhc
Q psy14015 67 VLLALAEQLGTFTPNVGG----PEYVHCLLPPLESLATV-EETVVRDKAVESLRLISAQHSP--HDLEAHFVPLVQRLAS 139 (318)
Q Consensus 67 VR~~aa~~L~~l~~~~~~----~~~~~~llp~l~~l~~d-~~~~VR~~a~~~l~~l~~~~~~--~~~~~~ilp~~~~l~~ 139 (318)
-|..+...|..+.- .|. +++...|+-.+.+.+.| .++.+|.-|+..|..++..-+. .+..+..+-.+.+-.+
T Consensus 303 ~~k~alsel~~m~~-e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ 381 (516)
T KOG2956|consen 303 ERKEALSELPKMLC-EGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAK 381 (516)
T ss_pred HHHHHHHHHHHHHH-ccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHh
Confidence 56666666665532 122 22223455555566666 7888999999999999987554 2344445555556666
Q ss_pred CCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHH
Q psy14015 140 GDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAG 219 (318)
Q Consensus 140 d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~ 219 (318)
|....+=..|.+-.... ++ ...|. .--..+.|.+.. .+...--++++
T Consensus 382 ds~~~v~~~Aeed~~~~------------------la-s~~P~----------~~I~~i~~~Ilt----~D~~~~~~~iK 428 (516)
T KOG2956|consen 382 DSQDEVMRVAEEDCLTT------------------LA-SHLPL----------QCIVNISPLILT----ADEPRAVAVIK 428 (516)
T ss_pred CCchhHHHHHHHHHHHH------------------HH-hhCch----------hHHHHHhhHHhc----CcchHHHHHHH
Confidence 65433222222211110 11 11111 011233344433 34444456777
Q ss_pred hhHHHHHHhchhh---hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHh
Q psy14015 220 KLGELAKVVEVDY---LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQL 275 (318)
Q Consensus 220 ~L~~l~~~~~~~~---~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~ 275 (318)
.+.++++-+..|. +..++.|.+.+....++..||++++.++..+-..+|.+..+.+
T Consensus 429 m~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePh 487 (516)
T KOG2956|consen 429 MLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPH 487 (516)
T ss_pred HHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhH
Confidence 8888988887764 4678999999999999999999999999999999997665544
No 104
>KOG1517|consensus
Probab=97.29 E-value=0.012 Score=60.11 Aligned_cols=215 Identities=17% Similarity=0.093 Sum_probs=128.7
Q ss_pred hccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhH---HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchH
Q psy14015 89 HCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHD---LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVK 165 (318)
Q Consensus 89 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~---~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~ 165 (318)
..-+|+..+.+-+. .-|..|+.-|..+...-+=.. ..--|.|++.+|++++-...|-..+-+-.+|++-- ..-+
T Consensus 471 PeQLPiVLQVLLSQ--vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD-~SCQ 547 (1387)
T KOG1517|consen 471 PEQLPIVLQVLLSQ--VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVD-PSCQ 547 (1387)
T ss_pred hHhcchHHHHHHHH--HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcC-chhH
Confidence 33566665554443 335566777777776532211 11238999999999987777776655555554322 1122
Q ss_pred HHHHH-----HHHhhccC---CCcccccc---hh-------hcCc--cchHHHHHHHHHhhcCC-CHHHHHHHHHhhHHH
Q psy14015 166 AELRS-----HFRNLCQD---DTPMQQGH---VW-------ECGS--GVKAELRSHFRNLCQDD-TPMVRRAAAGKLGEL 224 (318)
Q Consensus 166 ~~l~~-----~~~~l~~~---~~~~vR~~---v~-------~~~~--~~~~~ll~~l~~l~~D~-~~~VR~~aa~~L~~l 224 (318)
.++.+ +|.+...+ .+++-|.. |. .+|+ ....+++.+.+..++|+ .|..|.=++-+||.+
T Consensus 548 ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~L 627 (1387)
T KOG1517|consen 548 ADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRL 627 (1387)
T ss_pred HHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 22221 11111111 11222220 00 1121 34567888889999985 799999999999999
Q ss_pred HHHhchh-hh--HhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhC----Chh--------------hhhHhhHH----H
Q psy14015 225 AKVVEVD-YL--KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLL----SQS--------------DVEQLVMP----T 279 (318)
Q Consensus 225 ~~~~~~~-~~--~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l----~~~--------------~~~~~l~p----~ 279 (318)
=+.+... |. ....-..+..+++|+.++||.+++.+++-+.... ... ...+.+++ .
T Consensus 628 W~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ 707 (1387)
T KOG1517|consen 628 WEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMS 707 (1387)
T ss_pred hhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHH
Confidence 8765321 11 1123334557889999999999999999998763 111 11233444 6
Q ss_pred HHHhccccccccccCCCCCCchhhHHhhhhhhhhhhc
Q psy14015 280 LRQCSVQIVDHKFCPNNEFHPLELHVISATTLRLMRH 316 (318)
Q Consensus 280 l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~~~~~~~~ 316 (318)
+..+++| -.|-||-.++...+=.-.+|
T Consensus 708 ll~~vsd----------gsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 708 LLALVSD----------GSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred HHHHHhc----------cchHHHHHHHHHHHHHHHhh
Confidence 7888999 88888888876665444444
No 105
>KOG1059|consensus
Probab=97.28 E-value=0.019 Score=56.42 Aligned_cols=220 Identities=17% Similarity=0.169 Sum_probs=133.8
Q ss_pred CCCCCchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCccc
Q psy14015 8 PDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPE 86 (318)
Q Consensus 8 ~~~~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~ 86 (318)
||-.=+-..-++..|++.-+.+|-.++..+..+..... + ......|-|.+-++|+++ |..+|..++.++++.- +.
T Consensus 139 pdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP-e-Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKn--Pk 214 (877)
T KOG1059|consen 139 PDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP-E-ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKN--PQ 214 (877)
T ss_pred chhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh-H-hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhC--Cc
Confidence 34444445677889999999999999999999964432 2 122345677777889888 9999999999998632 22
Q ss_pred chhccchHHhhhcc-CchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchH
Q psy14015 87 YVHCLLPPLESLAT-VEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVK 165 (318)
Q Consensus 87 ~~~~llp~l~~l~~-d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~ 165 (318)
..=.+-|.|..++. ..+..+=.+-++.++.+...-+. ....++|-+.++.++. +|-.++-+++..+-..
T Consensus 215 nyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPR--LgKKLieplt~li~sT------~AmSLlYECvNTVVa~-- 284 (877)
T KOG1059|consen 215 NYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR--LGKKLIEPITELMEST------VAMSLLYECVNTVVAV-- 284 (877)
T ss_pred ccccccHHHHHHHhccCCCeehHHHHHHHhhccccCch--hhhhhhhHHHHHHHhh------HHHHHHHHHHHHheee--
Confidence 22237788877754 34555555555555555433221 2223677777776654 2322322222111000
Q ss_pred HHHHHHHHhhccCCCcccccchhhcCccchH---HHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHH
Q psy14015 166 AELRSHFRNLCQDDTPMQQGHVWECGSGVKA---ELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFV 242 (318)
Q Consensus 166 ~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~---~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~ 242 (318)
.+.... ++-.. --+.-+..++.|.+++.|+-..-++++++..- .+..+....++.
T Consensus 285 --------s~s~g~------------~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktH--p~~Vqa~kdlIl 342 (877)
T KOG1059|consen 285 --------SMSSGM------------SDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTH--PKAVQAHKDLIL 342 (877)
T ss_pred --------hhccCC------------CCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhC--HHHHHHhHHHHH
Confidence 000000 00111 12344566788999999999999999988753 223455666777
Q ss_pred HhhcCCcHHHHHHHHHHHHHH
Q psy14015 243 NLAQDEQDSVRLLAVEACVSI 263 (318)
Q Consensus 243 ~ll~D~~~~VR~aa~~~l~~l 263 (318)
+.+.|.+..+|-.|..-+..+
T Consensus 343 rcL~DkD~SIRlrALdLl~gm 363 (877)
T KOG1059|consen 343 RCLDDKDESIRLRALDLLYGM 363 (877)
T ss_pred HHhccCCchhHHHHHHHHHHH
Confidence 888999999998766554443
No 106
>KOG1062|consensus
Probab=97.17 E-value=0.018 Score=57.24 Aligned_cols=192 Identities=17% Similarity=0.166 Sum_probs=116.4
Q ss_pred HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhh
Q psy14015 67 VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSR 146 (318)
Q Consensus 67 VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR 146 (318)
|-..|.-+|+.++ .++....+.|....+++..++.||.+|+-+...+....+. ..+++++-..+++++....|=
T Consensus 123 vVglAL~alg~i~----s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~--l~e~f~~~~~~lL~ek~hGVL 196 (866)
T KOG1062|consen 123 VVGLALCALGNIC----SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD--LVEHFVIAFRKLLCEKHHGVL 196 (866)
T ss_pred ehHHHHHHhhccC----CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch--HHHHhhHHHHHHHhhcCCcee
Confidence 4455555666554 4667788999999999999999999999999999988764 355688888888888877777
Q ss_pred hhhhhhhhhhccccCcc---hHH---HHHHHHHhhc-cCCCcc--ccc--------ch----hhcCc---cchHH-----
Q psy14015 147 TSACGLFSVCYPRVTAG---VKA---ELRSHFRNLC-QDDTPM--QQG--------HV----WECGS---GVKAE----- 197 (318)
Q Consensus 147 ~~a~~~l~~~~~~~~~~---~~~---~l~~~~~~l~-~~~~~~--vR~--------~v----~~~~~---~~~~~----- 197 (318)
.++..++-.++..-.+. ++. .+...++++. +-+.|+ |.+ +. ..+|+ +..+.
T Consensus 197 ~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiL 276 (866)
T KOG1062|consen 197 IAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDIL 276 (866)
T ss_pred eeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 77766666665542221 111 2222233332 122222 111 00 01221 11111
Q ss_pred -----------------HHHHHHHhh-cCCCHHHHHHHHHhhHHHHHHhc-----------------hhhhHhhHHHHHH
Q psy14015 198 -----------------LRSHFRNLC-QDDTPMVRRAAAGKLGELAKVVE-----------------VDYLKTDIIPMFV 242 (318)
Q Consensus 198 -----------------ll~~l~~l~-~D~~~~VR~~aa~~L~~l~~~~~-----------------~~~~~~~llp~l~ 242 (318)
|-.++...+ =+++...|..|+..||+|...-. .+...+..-..+.
T Consensus 277 aqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIl 356 (866)
T KOG1062|consen 277 AQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTIL 356 (866)
T ss_pred HHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHH
Confidence 222222222 24566677777777777764311 1223456677888
Q ss_pred HhhcCCcHHHHHHHHHHHHHHH
Q psy14015 243 NLAQDEQDSVRLLAVEACVSIA 264 (318)
Q Consensus 243 ~ll~D~~~~VR~aa~~~l~~l~ 264 (318)
..++||+..+|+.+.+-.-.+.
T Consensus 357 eCL~DpD~SIkrralELs~~lv 378 (866)
T KOG1062|consen 357 ECLKDPDVSIKRRALELSYALV 378 (866)
T ss_pred HHhcCCcHHHHHHHHHHHHHHh
Confidence 8999999999998887654444
No 107
>KOG1078|consensus
Probab=97.13 E-value=0.013 Score=58.15 Aligned_cols=63 Identities=21% Similarity=0.184 Sum_probs=50.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy14015 200 SHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIA 264 (318)
Q Consensus 200 ~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~ 264 (318)
....+..-=++..||.+|..+|.+|+ .+.+.....+...+++.+.|++..||..|-.++..+.
T Consensus 469 r~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 469 RFIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 33334444478999999999999999 4555566778889999999999999999988777666
No 108
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.11 E-value=0.011 Score=57.49 Aligned_cols=104 Identities=15% Similarity=0.147 Sum_probs=68.7
Q ss_pred chHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhh
Q psy14015 194 VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE 273 (318)
Q Consensus 194 ~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~ 273 (318)
..+..+..++.||.|++..||..|++.|+.+|.. .......+..+|.+|++..+...+.++-.++..+... +..
T Consensus 56 l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~--~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~----d~k 129 (556)
T PF05918_consen 56 LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKD--NPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQ----DPK 129 (556)
T ss_dssp GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-----HH
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHh--HHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhc----CcH
Confidence 4567789999999999999999999999999973 2223578889999999988888888888888877743 222
Q ss_pred HhhHHHHHHhcc--ccccccccCCCCCCchhhHHhhhhhhhh
Q psy14015 274 QLVMPTLRQCSV--QIVDHKFCPNNEFHPLELHVISATTLRL 313 (318)
Q Consensus 274 ~~l~p~l~~ll~--D~~~~~~~~~~~~~~Vr~~~i~~~~~~~ 313 (318)
..|-..+-+++. . .+..||..+++-+...+
T Consensus 130 ~tL~~lf~~i~~~~~----------~de~~Re~~lkFl~~kl 161 (556)
T PF05918_consen 130 GTLTGLFSQIESSKS----------GDEQVRERALKFLREKL 161 (556)
T ss_dssp HHHHHHHHHHH---H----------S-HHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHhccc----------CchHHHHHHHHHHHHHH
Confidence 334444444441 2 45678888887665443
No 109
>KOG1967|consensus
Probab=97.05 E-value=0.008 Score=60.47 Aligned_cols=153 Identities=16% Similarity=0.148 Sum_probs=113.9
Q ss_pred ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHh---hhHHHHHHHhhcCCCchhhhhhhhhhhhhccccC
Q psy14015 85 PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLE---AHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVT 161 (318)
Q Consensus 85 ~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~---~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~ 161 (318)
+.+...+.|++.+........+|.--+..|..+.+..+.+.+. ..++|.+.+-+.=++..+|.++...++......+
T Consensus 862 QRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 862 QRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred HHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence 4455668899988888666788888888888888888875533 3488888877776778888888777765443322
Q ss_pred cchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCC---HHHHHHHHHhhHHHHHHhchhh---hHh
Q psy14015 162 AGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDT---PMVRRAAAGKLGELAKVVEVDY---LKT 235 (318)
Q Consensus 162 ~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~---~~VR~~aa~~L~~l~~~~~~~~---~~~ 235 (318)
.-.. ..-+.++|.+..+..|++ --||..|.++|+.+........ ...
T Consensus 942 tL~t---------------------------~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~ 994 (1030)
T KOG1967|consen 942 TLQT---------------------------EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRP 994 (1030)
T ss_pred ccch---------------------------HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccH
Confidence 2111 122668899999988877 5699999999999999665432 346
Q ss_pred hHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy14015 236 DIIPMFVNLAQDEQDSVRLLAVEACVSIA 264 (318)
Q Consensus 236 ~llp~l~~ll~D~~~~VR~aa~~~l~~l~ 264 (318)
.++..+..-+.|+..-||.-|+.+=+...
T Consensus 995 ~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen 995 LVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred HHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence 78888889999999999999987755443
No 110
>KOG2933|consensus
Probab=96.93 E-value=0.032 Score=49.78 Aligned_cols=142 Identities=16% Similarity=0.224 Sum_probs=98.8
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHhhCh--HhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhcc
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQ--ERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCL 91 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~--~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~l 91 (318)
+.+.++.|.|++|..-...+..+..++.+-.. .....+++.++.+-+.+... |-++++..+..+....+.. ..+.+
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~-i~~~l 168 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS-IDQEL 168 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 44567788899999888777777776654221 11345667777777787766 8889998888887655432 22222
Q ss_pred chHHhhh---ccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccC
Q psy14015 92 LPPLESL---ATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVT 161 (318)
Q Consensus 92 lp~l~~l---~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~ 161 (318)
-+.+..| ..+++..||+.|-.+|..+..+..+......++|.. ...+.++|..++..++.+..+++
T Consensus 169 d~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~----~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 169 DDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPIL----QHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHH----hhhchhhhhhhhccccccceecc
Confidence 2333333 356678999999999999999999887666666664 44567888888888776666554
No 111
>KOG1248|consensus
Probab=96.91 E-value=0.17 Score=52.58 Aligned_cols=204 Identities=11% Similarity=0.057 Sum_probs=128.5
Q ss_pred cCChHH-HHHHHHHHHcccccCcCcccc----hhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhH---HhhhHHH
Q psy14015 61 IYDEDE-VLLALAEQLGTFTPNVGGPEY----VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHD---LEAHFVP 132 (318)
Q Consensus 61 ~~D~~~-VR~~aa~~L~~l~~~~~~~~~----~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~---~~~~ilp 132 (318)
.+.+.. +++-+-+.|..+...-.++.+ ...+...+..=..+.....|..+..++..+.+.++.+. +...|-.
T Consensus 663 e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~E 742 (1176)
T KOG1248|consen 663 ENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPE 742 (1176)
T ss_pred hccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 333344 999999999988775222222 23333333333455567888999999999999888432 2333444
Q ss_pred HHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHH
Q psy14015 133 LVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPM 212 (318)
Q Consensus 133 ~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~ 212 (318)
.+..+ ++.+...|.+|-.+|-.+... ..+.....+. + +..-+..++.+...+-.+..+
T Consensus 743 vIL~~-Ke~n~~aR~~Af~lL~~i~~i----------~~~~d~g~e~-~----------~~~lnefl~~Isagl~gd~~~ 800 (1176)
T KOG1248|consen 743 VILSL-KEVNVKARRNAFALLVFIGAI----------QSSLDDGNEP-A----------SAILNEFLSIISAGLVGDSTR 800 (1176)
T ss_pred HHHhc-ccccHHHHhhHHHHHHHHHHH----------Hhhhcccccc-h----------HHHHHHHHHHHHhhhcccHHH
Confidence 44445 777788888887766544320 0000111000 0 012234455555444455566
Q ss_pred HHHHHHHhhHHHHHHh---chhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhh---HhhHHHHHHhccc
Q psy14015 213 VRRAAAGKLGELAKVV---EVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE---QLVMPTLRQCSVQ 286 (318)
Q Consensus 213 VR~~aa~~L~~l~~~~---~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~---~~l~p~l~~ll~D 286 (318)
++..-+-+++.+...+ ..+.....++..+...+...++.+|.+|+..+.-+...++..-.. +.|+|.++.+++|
T Consensus 801 ~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d 880 (1176)
T KOG1248|consen 801 VVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHD 880 (1176)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHh
Confidence 6655455555555433 234456889999999999999999999999999999888886543 4589999999999
No 112
>KOG0168|consensus
Probab=96.89 E-value=0.027 Score=56.46 Aligned_cols=187 Identities=18% Similarity=0.174 Sum_probs=123.9
Q ss_pred hHHHHHHHhcCc-cHHHHHHHHHhHHHHHHhhChHh-----HhhchhhhhhhhcCChH-H-HHHHHHHHHcccccCcCcc
Q psy14015 14 PIAVLIDELKNE-DVQLRLNSIKKLSTIALALGQER-----TRGELIPFLTETIYDED-E-VLLALAEQLGTFTPNVGGP 85 (318)
Q Consensus 14 ~i~~l~~~l~~~-~~~~R~~~~~~L~~ia~~lg~~~-----~~~~llp~l~~l~~D~~-~-VR~~aa~~L~~l~~~~~~~ 85 (318)
.+.+++..|+.+ ++...++++..|.++... |.+. -.+.++|.|..+++++. . +.--|++.|..+++.+...
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~m-gnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSM-GNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhh-cchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 688899999877 787778888888887643 4332 35679999999998854 3 9999999999998866432
Q ss_pred ---cchhccchHH-hhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccC
Q psy14015 86 ---EYVHCLLPPL-ESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVT 161 (318)
Q Consensus 86 ---~~~~~llp~l-~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~ 161 (318)
.+-+..+|+| ..|+.=+.-+|-+.++++|-+|....+..-...--+..+..++.==+..+...|+.+...+|..+.
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1223466765 556677788999999999999998776642221111111111110112344445444444444433
Q ss_pred cchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHh
Q psy14015 162 AGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVV 228 (318)
Q Consensus 162 ~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~ 228 (318)
..-- .+--+.+|.+..+++..+..+=..++-+|..++..+
T Consensus 327 sd~f---------------------------~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f 366 (1051)
T KOG0168|consen 327 SDEF---------------------------HFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGF 366 (1051)
T ss_pred Cccc---------------------------hHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhc
Confidence 2100 123457899999999888888888888888888765
No 113
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.82 E-value=0.0076 Score=57.98 Aligned_cols=131 Identities=15% Similarity=0.164 Sum_probs=88.0
Q ss_pred CCCCCCCch-HHHHHHHhcCccHHHHHHHHHhHHHHHHhhCh--HhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccC
Q psy14015 6 SAPDDSLYP-IAVLIDELKNEDVQLRLNSIKKLSTIALALGQ--ERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPN 81 (318)
Q Consensus 6 ~~~~~~l~~-i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~--~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~ 81 (318)
.++.+-..| +-.++..+.+.+..+|...++-|..+...+|+ +...+-|+..+.+-+-|-+. ||..|...|..+...
T Consensus 83 peg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~ 162 (885)
T COG5218 83 PEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEM 162 (885)
T ss_pred hhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc
Confidence 333344444 55677888899999999999999999888886 44556666666665666555 999999999998764
Q ss_pred cCcccchhccchHHhhh-ccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhh
Q psy14015 82 VGGPEYVHCLLPPLESL-ATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTS 148 (318)
Q Consensus 82 ~~~~~~~~~llp~l~~l-~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~ 148 (318)
-+.++ ..+..++..+ -.||.++||..|+-.+. . .+.-.|.+.+-+.|.+-..|..
T Consensus 163 ~~nee--n~~~n~l~~~vqnDPS~EVRr~allni~--v--------dnsT~p~IlERarDv~~anRr~ 218 (885)
T COG5218 163 ELNEE--NRIVNLLKDIVQNDPSDEVRRLALLNIS--V--------DNSTYPCILERARDVSGANRRM 218 (885)
T ss_pred cCChH--HHHHHHHHHHHhcCcHHHHHHHHHHHee--e--------CCCcchhHHHHhhhhhHHHHHH
Confidence 44432 2344455544 46889999998763321 1 1235666777777766555543
No 114
>KOG2025|consensus
Probab=96.78 E-value=0.12 Score=50.97 Aligned_cols=220 Identities=14% Similarity=0.026 Sum_probs=127.8
Q ss_pred HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhC--ChhHHhhhHHHHHHHhhcCCCch
Q psy14015 67 VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQH--SPHDLEAHFVPLVQRLASGDWFT 144 (318)
Q Consensus 67 VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~--~~~~~~~~ilp~~~~l~~d~~~~ 144 (318)
|-..+++-...+-..-...+..+.++..+......++..||......+..+.... -++++.+.+...+..-+.|..+.
T Consensus 62 Il~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~ 141 (892)
T KOG2025|consen 62 ILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPN 141 (892)
T ss_pred HHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCch
Confidence 4444444444433211223444555555555567778999999999888888733 34667777777777778999999
Q ss_pred hhhhhhhhhhhhccccC-cc--hHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHH-h
Q psy14015 145 SRTSACGLFSVCYPRVT-AG--VKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAG-K 220 (318)
Q Consensus 145 vR~~a~~~l~~~~~~~~-~~--~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~-~ 220 (318)
||.-|+..|..+=..-. ++ ++..++. .+-.|.+++||+.+..-. .....-+|....-+.|-+..+|+.+.. .
T Consensus 142 VRiqAv~aLsrlQ~d~~dee~~v~n~l~~---liqnDpS~EVRRaaLsnI-~vdnsTlp~IveRarDV~~anRrlvY~r~ 217 (892)
T KOG2025|consen 142 VRIQAVLALSRLQGDPKDEECPVVNLLKD---LIQNDPSDEVRRAALSNI-SVDNSTLPCIVERARDVSGANRRLVYERC 217 (892)
T ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHH---HHhcCCcHHHHHHHHHhh-ccCcccchhHHHHhhhhhHHHHHHHHHHh
Confidence 99999888876532211 11 2222222 233566677777533211 011223577777777777776665544 3
Q ss_pred hHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHH-HHhhCChhhhhHhhHHHHHHhccccccccccCCCCCC
Q psy14015 221 LGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVS-IASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFH 299 (318)
Q Consensus 221 L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~-l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~ 299 (318)
++++ .. .... ...-+-.++..++|.+..||+++..+|.. +..+. ...++..+ +.|+= ....
T Consensus 218 lpki-d~-r~ls-i~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~-----dgni~ElL-~~ldv---------snss 279 (892)
T KOG2025|consen 218 LPKI-DL-RSLS-IDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFS-----DGNILELL-ERLDV---------SNSS 279 (892)
T ss_pred hhhh-hh-hhhh-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhc-----cccHHHHH-HHhcc---------ccch
Confidence 3333 21 1111 23455677888899999999999886543 33221 12233333 33332 1344
Q ss_pred chhhHHhhh
Q psy14015 300 PLELHVISA 308 (318)
Q Consensus 300 ~Vr~~~i~~ 308 (318)
+|+..++++
T Consensus 280 ~vavk~lea 288 (892)
T KOG2025|consen 280 EVAVKALEA 288 (892)
T ss_pred HHHHHHHHH
Confidence 888888765
No 115
>KOG1967|consensus
Probab=96.74 E-value=0.017 Score=58.29 Aligned_cols=106 Identities=14% Similarity=0.126 Sum_probs=86.6
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch--hhhHhhHHHHHHHhhcCCc---HHHHHHHHHHHHHHHhhCCh
Q psy14015 195 KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV--DYLKTDIIPMFVNLAQDEQ---DSVRLLAVEACVSIASLLSQ 269 (318)
Q Consensus 195 ~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~--~~~~~~llp~l~~ll~D~~---~~VR~aa~~~l~~l~~~l~~ 269 (318)
...++|.+++.+.=++..||-.+...++.+....+. ......++|.+..+.+|++ ..||..|..+++.+...++.
T Consensus 907 ~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~ 986 (1030)
T KOG1967|consen 907 FPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPT 986 (1030)
T ss_pred hhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCC
Confidence 367899999999989999999999999888765442 1224679999999999998 68999999999999998877
Q ss_pred hh---hhHhhHHHHHHhccccccccccCCCCCCchhhHHhhhhh
Q psy14015 270 SD---VEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISATT 310 (318)
Q Consensus 270 ~~---~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~~ 310 (318)
.. +...++..+.+.|.| +-.-||-.++.+-+
T Consensus 987 ~~l~~fr~~Vl~al~k~LdD----------kKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 987 KSLLSFRPLVLRALIKILDD----------KKRLVRKEAVDTRQ 1020 (1030)
T ss_pred cccccccHHHHHHhhhccCc----------HHHHHHHHHHHHhh
Confidence 64 345699999999999 77777777776544
No 116
>KOG1058|consensus
Probab=96.73 E-value=0.14 Score=50.91 Aligned_cols=34 Identities=18% Similarity=0.419 Sum_probs=25.7
Q ss_pred CCCCCCchHHHHHHHhcCccHHHHHHHHHhHHHH
Q psy14015 7 APDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTI 40 (318)
Q Consensus 7 ~~~~~l~~i~~l~~~l~~~~~~~R~~~~~~L~~i 40 (318)
.|+-....=..+++.|.+.+.+++..+++++-.+
T Consensus 14 ~p~~e~~~~~~ik~~Lek~~~~~KIeamK~ii~~ 47 (948)
T KOG1058|consen 14 SPDGEPMSEDEIKEKLEKGDDEVKIEAMKKIIAL 47 (948)
T ss_pred CCcccccchHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 3444445556788899999999999999887655
No 117
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.72 E-value=0.078 Score=48.09 Aligned_cols=170 Identities=16% Similarity=0.151 Sum_probs=92.9
Q ss_pred hhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhc
Q psy14015 97 SLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLC 176 (318)
Q Consensus 97 ~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~ 176 (318)
.-...++..||+.|+++++..+-. +++. ....++.+.+.++.+...+|..|+..+..++..-+... +....
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Ll-d~~~-a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~-------~~~~~ 104 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLL-DKEL-AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI-------FDSES 104 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHh-ChHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh-------ccchh
Confidence 344556678888888887766643 3322 23345555554444466777777666543322111100 00000
Q ss_pred cCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHH--Hhch-hhhHhhHHHHHHHhhcCCcHHHH
Q psy14015 177 QDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAK--VVEV-DYLKTDIIPMFVNLAQDEQDSVR 253 (318)
Q Consensus 177 ~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~--~~~~-~~~~~~llp~l~~ll~D~~~~VR 253 (318)
... .+.....+...+.+.+.++++++|..+++.+.++.- .+.. +.+...++-.+.+=...++..+|
T Consensus 105 ~~~-----------~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~Lr 173 (298)
T PF12719_consen 105 DND-----------ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLR 173 (298)
T ss_pred ccC-----------ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHH
Confidence 000 012346788999999999999999999999999774 3334 33444444433333344455666
Q ss_pred HHHHHHHHHHHhhCC--hhhhhHhhHHHHHHhccc
Q psy14015 254 LLAVEACVSIASLLS--QSDVEQLVMPTLRQCSVQ 286 (318)
Q Consensus 254 ~aa~~~l~~l~~~l~--~~~~~~~l~p~l~~ll~D 286 (318)
+...--+..++..-. ++...+..+|.+..+.+.
T Consensus 174 Q~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 174 QCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 665544444443211 223344566666666655
No 118
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=96.63 E-value=0.027 Score=56.32 Aligned_cols=92 Identities=14% Similarity=0.171 Sum_probs=55.5
Q ss_pred chHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCC---cHHHHHHHHHHHHHHHhhCChh
Q psy14015 194 VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDE---QDSVRLLAVEACVSIASLLSQS 270 (318)
Q Consensus 194 ~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~---~~~VR~aa~~~l~~l~~~l~~~ 270 (318)
..+.+...+....+..+...+..++++||.++. ...+|.+...+.+. ...+|.+|+.++..+....
T Consensus 487 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~--- 555 (618)
T PF01347_consen 487 YVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC--- 555 (618)
T ss_dssp GTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT----
T ss_pred HHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC---
Confidence 344555555555666777888888888887764 34666666666666 6688888887777664332
Q ss_pred hhhHhhHHHHHHhccccccccccCCCCCCchhhHHh
Q psy14015 271 DVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVI 306 (318)
Q Consensus 271 ~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i 306 (318)
-..+.+.+++...| ..++++||+.+.
T Consensus 556 --~~~v~~~l~~I~~n--------~~e~~EvRiaA~ 581 (618)
T PF01347_consen 556 --PEKVREILLPIFMN--------TTEDPEVRIAAY 581 (618)
T ss_dssp --HHHHHHHHHHHHH---------TTS-HHHHHHHH
T ss_pred --cHHHHHHHHHHhcC--------CCCChhHHHHHH
Confidence 23455566666666 335666776654
No 119
>KOG1517|consensus
Probab=96.60 E-value=0.1 Score=53.67 Aligned_cols=188 Identities=14% Similarity=0.087 Sum_probs=117.5
Q ss_pred hchhhhhhhhcCChHH-HHHHHHHHHcccccC---cCcccchhccchHHhhhccC-c--hhHHHHHHHHHHHHHHhhCCh
Q psy14015 51 GELIPFLTETIYDEDE-VLLALAEQLGTFTPN---VGGPEYVHCLLPPLESLATV-E--ETVVRDKAVESLRLISAQHSP 123 (318)
Q Consensus 51 ~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~---~~~~~~~~~llp~l~~l~~d-~--~~~VR~~a~~~l~~l~~~~~~ 123 (318)
--+.|++.+|++.+.. .|-.++-...++... ...+-+++.....+.+.+.+ + +++-|.-|+-.|..|+..+..
T Consensus 511 VGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~l 590 (1387)
T KOG1517|consen 511 VGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKL 590 (1387)
T ss_pred cchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccch
Confidence 3478999999988654 777766655544321 00000111111122222222 1 358899999999999987654
Q ss_pred hH--H-hhhHHHHHHHhhcCC-CchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHH
Q psy14015 124 HD--L-EAHFVPLVQRLASGD-WFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELR 199 (318)
Q Consensus 124 ~~--~-~~~ilp~~~~l~~d~-~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll 199 (318)
.+ . ...++.+....++|+ .+-.|.=+|-.||++-...... ..+ -.+....
T Consensus 591 GQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~A----------rw~----------------G~r~~Ah 644 (1387)
T KOG1517|consen 591 GQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEA----------RWS----------------GRRDNAH 644 (1387)
T ss_pred hHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchh----------hhc----------------cccccHH
Confidence 33 2 234777777888885 5667766666666553332211 000 1224456
Q ss_pred HHHHHhhcCCCHHHHHHHHHhhHHHHHHh----ch-------------h-hhHhhHHH----HHHHhhcCCcHHHHHHHH
Q psy14015 200 SHFRNLCQDDTPMVRRAAAGKLGELAKVV----EV-------------D-YLKTDIIP----MFVNLAQDEQDSVRLLAV 257 (318)
Q Consensus 200 ~~l~~l~~D~~~~VR~~aa~~L~~l~~~~----~~-------------~-~~~~~llp----~l~~ll~D~~~~VR~aa~ 257 (318)
..+..++.|+.++||.+|..+||.+..+. .. + ...+++++ .+..+.+|.++-||...+
T Consensus 645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~ 724 (1387)
T KOG1517|consen 645 EKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVV 724 (1387)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHH
Confidence 77888899999999999999999998752 11 0 11233444 566778999999999988
Q ss_pred HHHHHHH
Q psy14015 258 EACVSIA 264 (318)
Q Consensus 258 ~~l~~l~ 264 (318)
.++..+.
T Consensus 725 v~ls~~~ 731 (1387)
T KOG1517|consen 725 VALSHFV 731 (1387)
T ss_pred HHHHHHH
Confidence 8887766
No 120
>KOG1943|consensus
Probab=96.55 E-value=0.2 Score=51.66 Aligned_cols=143 Identities=18% Similarity=0.123 Sum_probs=91.4
Q ss_pred HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHh
Q psy14015 126 LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNL 205 (318)
Q Consensus 126 ~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l 205 (318)
+.+.++..+.+.++|....+|++||+.+|++..+++++.-.. +-+..+..|...
T Consensus 338 ivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~--------------------------vi~svid~~~p~ 391 (1133)
T KOG1943|consen 338 IVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQ--------------------------VIGSVIDLFNPA 391 (1133)
T ss_pred HHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHH--------------------------HHHHHHHhcCcC
Confidence 334567777778899999999999999999988887532111 122333322222
Q ss_pred hcCCCHHHHHHHHHhhHHHHHH-hchhhhHhhHHHHHHHhhcCCc--------HHHHHHHHHHHHHHHhhCChhhhh---
Q psy14015 206 CQDDTPMVRRAAAGKLGELAKV-VEVDYLKTDIIPMFVNLAQDEQ--------DSVRLLAVEACVSIASLLSQSDVE--- 273 (318)
Q Consensus 206 ~~D~~~~VR~~aa~~L~~l~~~-~~~~~~~~~llp~l~~ll~D~~--------~~VR~aa~~~l~~l~~~l~~~~~~--- 273 (318)
-.|..|+ .++-+|++++.- +-......+++|++.+.+.-.. .+||-+++-.+=.++..-.+....
T Consensus 392 e~~~aWH---gacLaLAELA~rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l 468 (1133)
T KOG1943|consen 392 EDDSAWH---GACLALAELALRGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVL 468 (1133)
T ss_pred CchhHHH---HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHH
Confidence 2344565 888899999852 1122235788997776664333 379999999988888877766433
Q ss_pred HhhHH-HHHHhccccccccccCCCCCCchhhHHhh
Q psy14015 274 QLVMP-TLRQCSVQIVDHKFCPNNEFHPLELHVIS 307 (318)
Q Consensus 274 ~~l~p-~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~ 307 (318)
+.+.+ .+...+-| .+-++|-.+..
T Consensus 469 ~~L~s~LL~~AlFD----------revncRRAAsA 493 (1133)
T KOG1943|consen 469 QSLASALLIVALFD----------REVNCRRAASA 493 (1133)
T ss_pred HHHHHHHHHHHhcC----------chhhHhHHHHH
Confidence 33444 34456777 66666655543
No 121
>KOG1077|consensus
Probab=96.51 E-value=0.32 Score=48.14 Aligned_cols=69 Identities=16% Similarity=0.184 Sum_probs=43.3
Q ss_pred hHHHHHHHHHhhc-CCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCC
Q psy14015 195 KAELRSHFRNLCQ-DDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLS 268 (318)
Q Consensus 195 ~~~ll~~l~~l~~-D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~ 268 (318)
+.+ ....+..++ +.+..||+-++.-|-.++..=..+.+.++++.++.. .++.+|.-.+--+.-+++.+-
T Consensus 367 K~h-~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~elLqYL~t----Ad~sireeivlKvAILaEKyA 436 (938)
T KOG1077|consen 367 KKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYLET----ADYSIREEIVLKVAILAEKYA 436 (938)
T ss_pred HHH-HHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhh----cchHHHHHHHHHHHHHHHHhc
Confidence 444 445555555 788888888888888888654444455555555444 566777776666666665543
No 122
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.023 Score=54.63 Aligned_cols=80 Identities=19% Similarity=0.069 Sum_probs=60.4
Q ss_pred HHHHHHHh-hcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhh
Q psy14015 198 LRSHFRNL-CQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLV 276 (318)
Q Consensus 198 ll~~l~~l-~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l 276 (318)
++..++.. .+|.+..||++|.-+||-++.. + ...++..+.-|.+..+.+||...+-+++-.|..-|...+
T Consensus 552 vv~~lLh~avsD~nDDVrRAAViAlGfvc~~---D--~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a---- 622 (926)
T COG5116 552 VVSTLLHYAVSDGNDDVRRAAVIALGFVCCD---D--RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKVA---- 622 (926)
T ss_pred hHhhhheeecccCchHHHHHHHHheeeeEec---C--cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHHH----
Confidence 34444444 6799999999999999988752 1 233555777777888999999999999999987777654
Q ss_pred HHHHHHhccc
Q psy14015 277 MPTLRQCSVQ 286 (318)
Q Consensus 277 ~p~l~~ll~D 286 (318)
+..+.++..|
T Consensus 623 ~diL~~L~~D 632 (926)
T COG5116 623 TDILEALMYD 632 (926)
T ss_pred HHHHHHHhhC
Confidence 4557778888
No 123
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.46 E-value=0.026 Score=54.47 Aligned_cols=85 Identities=19% Similarity=0.084 Sum_probs=51.6
Q ss_pred HHHHHHHHHcccccCcCc--ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHH-hhcCCCc
Q psy14015 67 VLLALAEQLGTFTPNVGG--PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQR-LASGDWF 143 (318)
Q Consensus 67 VR~~aa~~L~~l~~~~~~--~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~-l~~d~~~ 143 (318)
||.-....|..+...++. +...+.++--+..-+-|.++-||..|+.+|.++.+.-..+. +.+..+++. +.+||+-
T Consensus 107 VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee--n~~~n~l~~~vqnDPS~ 184 (885)
T COG5218 107 VRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE--NRIVNLLKDIVQNDPSD 184 (885)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH--HHHHHHHHHHHhcCcHH
Confidence 676666666666555553 23333344445555678889999999999988876543321 122223332 4578888
Q ss_pred hhhhhhhhhh
Q psy14015 144 TSRTSACGLF 153 (318)
Q Consensus 144 ~vR~~a~~~l 153 (318)
.||..|...+
T Consensus 185 EVRr~allni 194 (885)
T COG5218 185 EVRRLALLNI 194 (885)
T ss_pred HHHHHHHHHe
Confidence 8888875443
No 124
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=96.30 E-value=0.17 Score=50.68 Aligned_cols=91 Identities=18% Similarity=0.196 Sum_probs=54.0
Q ss_pred HHHHHHHHhhcCC---CHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhh
Q psy14015 197 ELRSHFRNLCQDD---TPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE 273 (318)
Q Consensus 197 ~ll~~l~~l~~D~---~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~ 273 (318)
..++.+..++.+. ...+|.+|+++|..++... ++.+.+.++|+|.+-..|+ .||.+|...+...-. + .
T Consensus 521 ~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-~~~v~~~l~~I~~n~~e~~--EvRiaA~~~lm~~~P---~---~ 591 (618)
T PF01347_consen 521 ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-PEKVREILLPIFMNTTEDP--EVRIAAYLILMRCNP---S---P 591 (618)
T ss_dssp GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HHHHHHHHHHHHH-TTS-H--HHHHHHHHHHHHT---------H
T ss_pred hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-cHHHHHHHHHHhcCCCCCh--hHHHHHHHHHHhcCC---C---H
Confidence 3567777777766 6899999999999885443 3345566666666655544 499999877665421 1 1
Q ss_pred HhhHHHHHHhccccccccccCCCCCCchhhHHh
Q psy14015 274 QLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVI 306 (318)
Q Consensus 274 ~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i 306 (318)
..+..+...+-.| ++++|+-.+.
T Consensus 592 ~~l~~i~~~l~~E----------~~~QV~sfv~ 614 (618)
T PF01347_consen 592 SVLQRIAQSLWNE----------PSNQVASFVY 614 (618)
T ss_dssp HHHHHHHHHHTT-----------S-HHHHHHHH
T ss_pred HHHHHHHHHHhhC----------chHHHHHHHH
Confidence 2223333334466 6677776665
No 125
>KOG4413|consensus
Probab=96.27 E-value=0.24 Score=44.86 Aligned_cols=200 Identities=15% Similarity=0.164 Sum_probs=111.3
Q ss_pred hHhhchhhhhhh-hcCChHHHHHHHHHHHcccccCcCcccc-------hhccchHHhhhccCchhHHHHHHHHHHHHHHh
Q psy14015 48 RTRGELIPFLTE-TIYDEDEVLLALAEQLGTFTPNVGGPEY-------VHCLLPPLESLATVEETVVRDKAVESLRLISA 119 (318)
Q Consensus 48 ~~~~~llp~l~~-l~~D~~~VR~~aa~~L~~l~~~~~~~~~-------~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~ 119 (318)
....+++|-+.. +..|+..|+.-++++++-+.+....+.. ...++|.+......++++|-.+|.+++..++-
T Consensus 78 hlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrial 157 (524)
T KOG4413|consen 78 HLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIAL 157 (524)
T ss_pred hhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 355668888875 5566666999999998888765443222 24477888888888999999999999999875
Q ss_pred hCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHH
Q psy14015 120 QHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELR 199 (318)
Q Consensus 120 ~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll 199 (318)
.-.. +--++.+-..|+ .+.|.-|+.. ++-.|....+.+.++.+-. |++ ..+..++-++
T Consensus 158 fpaa------leaiFeSellDd-lhlrnlaakc--------ndiaRvRVleLIieifSiS-pes------aneckkSGLl 215 (524)
T KOG4413|consen 158 FPAA------LEAIFESELLDD-LHLRNLAAKC--------NDIARVRVLELIIEIFSIS-PES------ANECKKSGLL 215 (524)
T ss_pred cHHH------HHHhcccccCCh-HHHhHHHhhh--------hhHHHHHHHHHHHHHHhcC-HHH------HhHhhhhhHH
Confidence 4221 111111111222 1222211110 1111211112222221111 110 0012345567
Q ss_pred HHHHHhhcC-CCHHHHHHHHHhhHHHHHHh-chhh-----hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhh
Q psy14015 200 SHFRNLCQD-DTPMVRRAAAGKLGELAKVV-EVDY-----LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV 272 (318)
Q Consensus 200 ~~l~~l~~D-~~~~VR~~aa~~L~~l~~~~-~~~~-----~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~ 272 (318)
..+..=++- ++-.||.+++.-..+++..- |.+. +.+.+-.+....-.||-...| +++.+.++||++..
T Consensus 216 dlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfr-----almgfgkffgkeai 290 (524)
T KOG4413|consen 216 DLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFR-----ALMGFGKFFGKEAI 290 (524)
T ss_pred HHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHH-----HHHHHHHHhcchHH
Confidence 666544444 78899999999999988653 3332 223333344444567765554 46778888888765
Q ss_pred hH
Q psy14015 273 EQ 274 (318)
Q Consensus 273 ~~ 274 (318)
.+
T Consensus 291 md 292 (524)
T KOG4413|consen 291 MD 292 (524)
T ss_pred hh
Confidence 43
No 126
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.21 E-value=0.17 Score=45.92 Aligned_cols=153 Identities=14% Similarity=0.109 Sum_probs=71.4
Q ss_pred HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhH-----------HhhhHHHHHH
Q psy14015 67 VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHD-----------LEAHFVPLVQ 135 (318)
Q Consensus 67 VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~-----------~~~~ilp~~~ 135 (318)
||..+.+-||-++- +.. ......++++.+.+..+++.||..|+.++..+.-..+.+. ....++..+.
T Consensus 43 vR~~al~cLGl~~L-ld~-~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~ 120 (298)
T PF12719_consen 43 VRELALKCLGLCCL-LDK-ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILT 120 (298)
T ss_pred HHHHHHHHHHHHHH-hCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHH
Confidence 55555555554432 222 2222233333333333355555555555555554443211 1123555555
Q ss_pred HhhcCCCchhhhhhhhhhhhhc--cccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHH
Q psy14015 136 RLASGDWFTSRTSACGLFSVCY--PRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMV 213 (318)
Q Consensus 136 ~l~~d~~~~vR~~a~~~l~~~~--~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~V 213 (318)
+.+.+.+..+|..|++.+.|++ .++.+ ... .-+.++-.+..-.+.++.++
T Consensus 121 ~~l~~~~~~~~~~a~EGl~KLlL~~~i~~--~~~--------------------------vL~~Lll~yF~p~t~~~~~L 172 (298)
T PF12719_consen 121 KFLDSENPELQAIAVEGLCKLLLSGRISD--PPK--------------------------VLSRLLLLYFNPSTEDNQRL 172 (298)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhcCCCCc--HHH--------------------------HHHHHHHHHcCcccCCcHHH
Confidence 5566656667777777776642 12221 000 11122222222233445677
Q ss_pred HHHHHHhhHHHHHHhc--hhhhHhhHHHHHHHhhcCCc
Q psy14015 214 RRAAAGKLGELAKVVE--VDYLKTDIIPMFVNLAQDEQ 249 (318)
Q Consensus 214 R~~aa~~L~~l~~~~~--~~~~~~~llp~l~~ll~D~~ 249 (318)
|+....-|+.++..-. ++.+.+..+|++..+.+.+.
T Consensus 173 rQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 173 RQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCcc
Confidence 7766666666664221 23344556677776665443
No 127
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=96.19 E-value=0.33 Score=49.03 Aligned_cols=257 Identities=17% Similarity=0.190 Sum_probs=132.2
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHhhC-h-HhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcC--cccchh
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALG-Q-ERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVG--GPEYVH 89 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg-~-~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~--~~~~~~ 89 (318)
+.-+.+.|++++......++.-|..++-.-. . .-....++|-+.++++.+.+ ++..+.+.|.++.-.-. ..-...
T Consensus 292 V~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~ 371 (708)
T PF05804_consen 292 VSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSL 371 (708)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHC
Confidence 4456677888888888877777777753211 1 11244678888888876655 88888888888863111 122234
Q ss_pred ccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh--HHhhhHHHHHHHhh-cCCCchhhhhhhhhhhhhcccc------
Q psy14015 90 CLLPPLESLATVEETVVRDKAVESLRLISAQHSPH--DLEAHFVPLVQRLA-SGDWFTSRTSACGLFSVCYPRV------ 160 (318)
Q Consensus 90 ~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~ilp~~~~l~-~d~~~~vR~~a~~~l~~~~~~~------ 160 (318)
.++|-+..++.|+ ..|..++..|..++..-... ......+|.+.+++ ..+...+...++.++-.+...-
T Consensus 372 GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm 449 (708)
T PF05804_consen 372 GLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLM 449 (708)
T ss_pred CCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHH
Confidence 4788888888875 45566776666665421111 11123567776643 4344444443333322221100
Q ss_pred -------------CcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcC-CCHHHHHHHHHhhHHHHH
Q psy14015 161 -------------TAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQD-DTPMVRRAAAGKLGELAK 226 (318)
Q Consensus 161 -------------~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D-~~~~VR~~aa~~L~~l~~ 226 (318)
-...-..+...++.++...++.. ..+.+++.+ +...+.. +++ ...+.++|-+++
T Consensus 450 ~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k--------~~f~~~i~~-L~~~v~~~~~e---e~~vE~LGiLaN 517 (708)
T PF05804_consen 450 CEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLK--------ELFVDFIGD-LAKIVSSGDSE---EFVVECLGILAN 517 (708)
T ss_pred HhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHH--------HHHHHHHHH-HHHHhhcCCcH---HHHHHHHHHHHh
Confidence 00000111233333433332210 011222222 2333333 333 456666666665
Q ss_pred Hh--chhh--hH--hhHHHHHHHhhcCCc--HHHHHHHHHHHHHHHhhCChhhh-----hHhhHHHHHHhccccc
Q psy14015 227 VV--EVDY--LK--TDIIPMFVNLAQDEQ--DSVRLLAVEACVSIASLLSQSDV-----EQLVMPTLRQCSVQIV 288 (318)
Q Consensus 227 ~~--~~~~--~~--~~llp~l~~ll~D~~--~~VR~aa~~~l~~l~~~l~~~~~-----~~~l~p~l~~ll~D~~ 288 (318)
.- +.+| +. ..++|.+.+++.... ..+.-.++-.++.++. .+.+ ..-+++.+..+++.+.
T Consensus 518 L~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~---d~~~A~lL~~sgli~~Li~LL~~kq 589 (708)
T PF05804_consen 518 LTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS---DPECAPLLAKSGLIPTLIELLNAKQ 589 (708)
T ss_pred cccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC---CHHHHHHHHhCChHHHHHHHHHhhC
Confidence 32 2122 22 259999999986552 2454444445554442 2222 2346788888887755
No 128
>KOG0414|consensus
Probab=96.16 E-value=0.14 Score=53.24 Aligned_cols=144 Identities=15% Similarity=0.125 Sum_probs=96.6
Q ss_pred ccchhccchHHhhhccC----chhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhh-cCCCchhhhhhhhhhhhhccc
Q psy14015 85 PEYVHCLLPPLESLATV----EETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLA-SGDWFTSRTSACGLFSVCYPR 159 (318)
Q Consensus 85 ~~~~~~llp~l~~l~~d----~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~-~d~~~~vR~~a~~~l~~~~~~ 159 (318)
......+.|++...+.. .++..+.+|.-+|+.+--. +.+.+.. -+|.+...+ +.+++.+|.+++-.+|.+.-+
T Consensus 914 k~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-Sa~fces-~l~llftimeksp~p~IRsN~VvalgDlav~ 991 (1251)
T KOG0414|consen 914 KSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-SAEFCES-HLPLLFTIMEKSPSPRIRSNLVVALGDLAVR 991 (1251)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-hHHHHHH-HHHHHHHHHhcCCCceeeecchheccchhhh
Confidence 44556688888888743 3588999999888887654 2333333 566666544 588999999987777654333
Q ss_pred cCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhH-hhHH
Q psy14015 160 VTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLK-TDII 238 (318)
Q Consensus 160 ~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~-~~ll 238 (318)
++. .-+.--+.+..-+.|+++.||+.|..-++.+.-. +-+. .--+
T Consensus 992 fpn-------------------------------lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILn---dmiKVKGql 1037 (1251)
T KOG0414|consen 992 FPN-------------------------------LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILN---DMIKVKGQL 1037 (1251)
T ss_pred ccc-------------------------------ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHh---hhhHhcccH
Confidence 321 1122346778888999999999999998887642 1111 1245
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy14015 239 PMFVNLAQDEQDSVRLLAVEACVSIA 264 (318)
Q Consensus 239 p~l~~ll~D~~~~VR~aa~~~l~~l~ 264 (318)
+-....+.||+..+|..|-.-+..++
T Consensus 1038 ~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 1038 SEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 66677889999999988764444433
No 129
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=95.95 E-value=0.1 Score=50.88 Aligned_cols=194 Identities=16% Similarity=0.155 Sum_probs=107.3
Q ss_pred hchhhhhhhhcCChHHHHHHHHHHHcccccCcCcccchhccchHHh--hhccC-----chhHHHHHHHHHHHHHHhhCCh
Q psy14015 51 GELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLE--SLATV-----EETVVRDKAVESLRLISAQHSP 123 (318)
Q Consensus 51 ~~llp~l~~l~~D~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~--~l~~d-----~~~~VR~~a~~~l~~l~~~~~~ 123 (318)
+.++|++..-++..++|-..+-..|+++...+.++...+.++.++. ....+ -...+|.+-+..|.. ....
T Consensus 237 ~~~~~~liAsad~~~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~k---S~~A 313 (501)
T PF13001_consen 237 ERFPPLLIASADSNSSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSK---SVIA 313 (501)
T ss_pred hHHhheeeEEeCCcchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHH---hHHH
Confidence 4567777766666666988888899988776767677777777766 21111 124555553333322 1111
Q ss_pred hHHhhhHHHHHHHhhcCC--Cchhhhhhhhhh---hhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHH
Q psy14015 124 HDLEAHFVPLVQRLASGD--WFTSRTSACGLF---SVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAEL 198 (318)
Q Consensus 124 ~~~~~~ilp~~~~l~~d~--~~~vR~~a~~~l---~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~l 198 (318)
......++.++..-+.++ ..+.|..+..-+ .......+...-..+.. .....+
T Consensus 314 a~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~----------------------~i~~~g 371 (501)
T PF13001_consen 314 ATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRP----------------------VILSQG 371 (501)
T ss_pred HhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHH----------------------HHHhcC
Confidence 112223444444444444 345555554444 32222222211111110 011112
Q ss_pred HHHHH-H---hhcCCCHHHHHHHHHhhHHHHHHhchhhh-HhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCCh
Q psy14015 199 RSHFR-N---LCQDDTPMVRRAAAGKLGELAKVVEVDYL-KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ 269 (318)
Q Consensus 199 l~~l~-~---l~~D~~~~VR~~aa~~L~~l~~~~~~~~~-~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~ 269 (318)
.|..- . -....+...|..+..++|.++.....-.. .-.++..+...+.++..++|.++-++++.++..+..
T Consensus 372 ~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~ 447 (501)
T PF13001_consen 372 WPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKD 447 (501)
T ss_pred ccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhc
Confidence 22220 0 01124678999999999999986543211 123666566666999999999999999999988854
No 130
>KOG0946|consensus
Probab=95.82 E-value=0.15 Score=51.00 Aligned_cols=135 Identities=16% Similarity=0.161 Sum_probs=76.4
Q ss_pred HHHHHHHhcCcc-HHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCC--hHHHHHHHHHHHcccccCcCcccchhcc
Q psy14015 15 IAVLIDELKNED-VQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYD--EDEVLLALAEQLGTFTPNVGGPEYVHCL 91 (318)
Q Consensus 15 i~~l~~~l~~~~-~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D--~~~VR~~aa~~L~~l~~~~~~~~~~~~l 91 (318)
|+++-+...+.. ...|+.|++.|...++..-.+--..-+-|++..+-.| +.+.-..+...+..+.. ..+.
T Consensus 24 I~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~---~dd~---- 96 (970)
T KOG0946|consen 24 IEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTS---HDDS---- 96 (970)
T ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHh---cCcc----
Confidence 777777777666 4679999999988876633332233466777666666 33444555555544432 1110
Q ss_pred chHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHH
Q psy14015 92 LPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAEL 168 (318)
Q Consensus 92 lp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l 168 (318)
| ...|+.. .+...-..|++.+-. .+..+..+..+....+++||..++.++..++...+.+++..+
T Consensus 97 -~----~v~dds~----qsdd~g~~iae~fik---~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~l 161 (970)
T KOG0946|consen 97 -P----EVMDDST----QSDDLGLWIAEQFIK---NQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDAL 161 (970)
T ss_pred -h----hhcccch----hhhHHHHHHHHHHHc---CchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHH
Confidence 0 0011111 111112222222211 122566666777777899999999999988877776666554
No 131
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=95.78 E-value=0.43 Score=47.40 Aligned_cols=29 Identities=17% Similarity=-0.003 Sum_probs=17.0
Q ss_pred HHHHHHHhhcCC----Cchhhhhhhhhhhhhcc
Q psy14015 130 FVPLVQRLASGD----WFTSRTSACGLFSVCYP 158 (318)
Q Consensus 130 ilp~~~~l~~d~----~~~vR~~a~~~l~~~~~ 158 (318)
++..+..|++++ ....|.+|.-.++.+..
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~ 426 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVR 426 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHH
Confidence 444455566653 34577777777765543
No 132
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=95.77 E-value=0.039 Score=40.72 Aligned_cols=72 Identities=21% Similarity=0.290 Sum_probs=53.5
Q ss_pred cCCCHHHHHHHHHhhHHHHHHhchh--hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHH
Q psy14015 207 QDDTPMVRRAAAGKLGELAKVVEVD--YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTL 280 (318)
Q Consensus 207 ~D~~~~VR~~aa~~L~~l~~~~~~~--~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l 280 (318)
.|+.|.+|..|+..++.++..++.. .....+.-.+.+.+.||+... ..--.++..+... |++.+...++|.+
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~-~t~YGAi~gL~~l-G~~~vr~~ilP~l 89 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPL-GTHYGAIVGLSAL-GPEAVRALILPNL 89 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHH-HHHHHHHhhccCc
Confidence 5778999999999999999999853 356678888888899886522 2223444455544 7888888888865
No 133
>KOG0414|consensus
Probab=95.77 E-value=0.062 Score=55.71 Aligned_cols=129 Identities=15% Similarity=0.101 Sum_probs=86.5
Q ss_pred ChhHHhhhHHHHHHHhhcCCC----chhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHH
Q psy14015 122 SPHDLEAHFVPLVQRLASGDW----FTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAE 197 (318)
Q Consensus 122 ~~~~~~~~ilp~~~~l~~d~~----~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ 197 (318)
++..+...+.|++.+.+..+. +..+.+|.-.|++++.--+ .+.+.
T Consensus 912 gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa-------------------------------~fces 960 (1251)
T KOG0414|consen 912 GEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISA-------------------------------EFCES 960 (1251)
T ss_pred ChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH-------------------------------HHHHH
Confidence 445566668899988886653 3455666555555432110 12244
Q ss_pred HHHHHHHhhc-CCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhh-Hh
Q psy14015 198 LRSHFRNLCQ-DDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE-QL 275 (318)
Q Consensus 198 ll~~l~~l~~-D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~-~~ 275 (318)
-+|.|+..++ .+++.||.++.-++|.++-.+.. +.+..-+.+..-+.|++..||+.|.-.+..+.- .+..+ .=
T Consensus 961 ~l~llftimeksp~p~IRsN~VvalgDlav~fpn--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLIL---ndmiKVKG 1035 (1251)
T KOG0414|consen 961 HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLIL---NDMIKVKG 1035 (1251)
T ss_pred HHHHHHHHHhcCCCceeeecchheccchhhhccc--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHH---hhhhHhcc
Confidence 4677776665 89999999999999999976642 334555778889999999999999887766542 11111 12
Q ss_pred hHHHHHHhccc
Q psy14015 276 VMPTLRQCSVQ 286 (318)
Q Consensus 276 l~p~l~~ll~D 286 (318)
-++-+..|+.|
T Consensus 1036 ql~eMA~cl~D 1046 (1251)
T KOG0414|consen 1036 QLSEMALCLED 1046 (1251)
T ss_pred cHHHHHHHhcC
Confidence 45667788888
No 134
>KOG1058|consensus
Probab=95.63 E-value=0.74 Score=46.03 Aligned_cols=275 Identities=14% Similarity=0.109 Sum_probs=155.4
Q ss_pred HHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccch--
Q psy14015 17 VLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLP-- 93 (318)
Q Consensus 17 ~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp-- 93 (318)
.+-..|+++|..+|=..++-|.++ ......+.++|.+.+.++.... ||+.|.-.+..+=+.. ..++|
T Consensus 103 a~RkDLQHPNEyiRG~TLRFLckL----kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~------~~L~pDa 172 (948)
T KOG1058|consen 103 AYRKDLQHPNEYIRGSTLRFLCKL----KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF------EHLIPDA 172 (948)
T ss_pred HHhhhccCchHhhcchhhhhhhhc----CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh------hhhcCCh
Confidence 344789999999999999988885 3333677789999999999888 9999887766553321 11221
Q ss_pred --HHhhh-ccCchhHHHHHHHHH------------HHHHHhhCC---hhH-----------------HhhhHHHHHHHhh
Q psy14015 94 --PLESL-ATVEETVVRDKAVES------------LRLISAQHS---PHD-----------------LEAHFVPLVQRLA 138 (318)
Q Consensus 94 --~l~~l-~~d~~~~VR~~a~~~------------l~~l~~~~~---~~~-----------------~~~~ilp~~~~l~ 138 (318)
++..+ ..+.++.-++.|.-. +..-....+ +.. ....++..+..++
T Consensus 173 peLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL 252 (948)
T KOG1058|consen 173 PELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLL 252 (948)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHH
Confidence 22222 233333333322211 111111111 100 0011333444466
Q ss_pred cCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcc-ccc----chhhcC---ccchHHHHHHHHHhhcCCC
Q psy14015 139 SGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPM-QQG----HVWECG---SGVKAELRSHFRNLCQDDT 210 (318)
Q Consensus 139 ~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~-vR~----~v~~~~---~~~~~~ll~~l~~l~~D~~ 210 (318)
...+..+++.|++.+..+.. .+..-+..++.+.++.-+.+.. |.. ...++. +..-+.++--++..+..++
T Consensus 253 ~stssaV~fEaa~tlv~lS~--~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~d 330 (948)
T KOG1058|consen 253 SSTSSAVIFEAAGTLVTLSN--DPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPD 330 (948)
T ss_pred hcCCchhhhhhcceEEEccC--CHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCccc
Confidence 66677888888776654321 1223334445555555443321 111 001111 1223445555677788899
Q ss_pred HHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhh-------cCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHh
Q psy14015 211 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLA-------QDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQC 283 (318)
Q Consensus 211 ~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll-------~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~l 283 (318)
-+||+-+..-.-.++..-.. ++++..|++=. +|.+..-|+...+++..++..|+.- ...++|.++..
T Consensus 331 ldvr~Ktldi~ldLvssrNv----ediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~--aatvV~~ll~f 404 (948)
T KOG1058|consen 331 LDVRSKTLDIALDLVSSRNV----EDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEV--AATVVSLLLDF 404 (948)
T ss_pred ccHHHHHHHHHHhhhhhccH----HHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHH--HHHHHHHHHHH
Confidence 99998777665556543222 33444444332 4556677999999999999888653 45688999999
Q ss_pred cccccccc--------ccCCCCCCchhhHHhhhh
Q psy14015 284 SVQIVDHK--------FCPNNEFHPLELHVISAT 309 (318)
Q Consensus 284 l~D~~~~~--------~~~~~~~~~Vr~~~i~~~ 309 (318)
+.|.+..- |-.--.+|+.|..+|.+.
T Consensus 405 isD~N~~aas~vl~FvrE~iek~p~Lr~~ii~~l 438 (948)
T KOG1058|consen 405 ISDSNEAAASDVLMFVREAIEKFPNLRASIIEKL 438 (948)
T ss_pred hccCCHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 99966321 111235677777777543
No 135
>KOG1077|consensus
Probab=95.59 E-value=2.1 Score=42.63 Aligned_cols=168 Identities=13% Similarity=0.106 Sum_probs=85.8
Q ss_pred HHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhh----hhhccccCcchHHHHH
Q psy14015 94 PLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLF----SVCYPRVTAGVKAELR 169 (318)
Q Consensus 94 ~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l----~~~~~~~~~~~~~~l~ 169 (318)
++..|=.+.|-.||..|++-|..++...+.+++...++.++ ...++.+|.-.+--. .+.....+|-+--.+
T Consensus 373 Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~elLqYL----~tAd~sireeivlKvAILaEKyAtDy~WyVdviL- 447 (938)
T KOG1077|consen 373 IINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYL----ETADYSIREEIVLKVAILAEKYATDYSWYVDVIL- 447 (938)
T ss_pred HHHHhccccchHHHHHHHHHHHHHhchhhHHHHHHHHHHHH----hhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHH-
Confidence 34444447788999999999999998877776555555544 334556665332222 223333344321111
Q ss_pred HHHHhhccCCCc-ccccchhhc---CccchHHHHHHHHHhhcCCC--HHHHHHHHHhhHHHHHHhchh--hhHhhHHHHH
Q psy14015 170 SHFRNLCQDDTP-MQQGHVWEC---GSGVKAELRSHFRNLCQDDT--PMVRRAAAGKLGELAKVVEVD--YLKTDIIPMF 241 (318)
Q Consensus 170 ~~~~~l~~~~~~-~vR~~v~~~---~~~~~~~ll~~l~~l~~D~~--~~VR~~aa~~L~~l~~~~~~~--~~~~~llp~l 241 (318)
+ +..+++++.. +|-..|..+ .++...+.-..+.++++-+. ...=++.++-||+++..+..+ .........+
T Consensus 448 q-Liriagd~vsdeVW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsll 526 (938)
T KOG1077|consen 448 Q-LIRIAGDYVSDEVWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLL 526 (938)
T ss_pred H-HHHHhcccccHHHHHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHH
Confidence 1 1122333321 111111110 12233333344455555433 345567777778877765432 1122344455
Q ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhC
Q psy14015 242 VNLAQDEQDSVRLLAVEACVSIASLL 267 (318)
Q Consensus 242 ~~ll~D~~~~VR~aa~~~l~~l~~~l 267 (318)
-.-+.-.+...|.....+...+...+
T Consensus 527 h~K~~~~s~~tr~lLLtTyiKl~nl~ 552 (938)
T KOG1077|consen 527 HEKLHLCSPVTRALLLTTYIKLINLF 552 (938)
T ss_pred HHHhccCChhHHHHHHHHHHHHHhhC
Confidence 55555556666777777777766655
No 136
>KOG4535|consensus
Probab=95.53 E-value=0.13 Score=48.66 Aligned_cols=79 Identities=18% Similarity=0.164 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHhhHHHHHHhch--hhhHhhHHH-----HHHHhhcCCcHHHHHHHHHHHHHHHhh----CChhhhhHhh
Q psy14015 208 DDTPMVRRAAAGKLGELAKVVEV--DYLKTDIIP-----MFVNLAQDEQDSVRLLAVEACVSIASL----LSQSDVEQLV 276 (318)
Q Consensus 208 D~~~~VR~~aa~~L~~l~~~~~~--~~~~~~llp-----~l~~ll~D~~~~VR~aa~~~l~~l~~~----l~~~~~~~~l 276 (318)
-.+.+||.++..+||.+.+++.+ +....+++. ....-......-||..++.+++++.+. +....-...+
T Consensus 495 Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~ 574 (728)
T KOG4535|consen 495 ADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQA 574 (728)
T ss_pred hhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHH
Confidence 34567777777777777776531 001111111 111112223446777777777777642 2222234567
Q ss_pred HHHHHHhccc
Q psy14015 277 MPTLRQCSVQ 286 (318)
Q Consensus 277 ~p~l~~ll~D 286 (318)
+|.+..++.|
T Consensus 575 F~~L~~Lv~~ 584 (728)
T KOG4535|consen 575 FNALTSLVTS 584 (728)
T ss_pred HHHHHHHHHH
Confidence 7777777777
No 137
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.44 E-value=1.4 Score=43.78 Aligned_cols=112 Identities=16% Similarity=0.183 Sum_probs=80.8
Q ss_pred HHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCH
Q psy14015 132 PLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTP 211 (318)
Q Consensus 132 p~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~ 211 (318)
..+.+|+.+.++..|.+.++..+.+...+.... ...+.+. ..-..++..+.+-++|..|
T Consensus 302 ~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~--qm~e~~~-------------------~~~~~Lv~ll~ERl~D~~p 360 (1128)
T COG5098 302 EHFDELLDSESFTLRCCFLEICANLVEHFKKDG--QMVEHYK-------------------QKLNDLVGLLVERLSDTYP 360 (1128)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHhcch--hhHhhHH-------------------HHHHHHHHHHHHHhhccch
Confidence 456678899999999999888876654443211 0101110 1235678888999999999
Q ss_pred HHHHHHHHhhHHHHHHhc-hhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy14015 212 MVRRAAAGKLGELAKVVE-VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIA 264 (318)
Q Consensus 212 ~VR~~aa~~L~~l~~~~~-~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~ 264 (318)
-+|.-|.+-+.++...-. -....+++...+.+-++|.+..||+.+..-+..+.
T Consensus 361 y~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL 414 (1128)
T COG5098 361 YTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLL 414 (1128)
T ss_pred HHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 999999998888885311 11124678888889999999999999998888765
No 138
>KOG0413|consensus
Probab=95.35 E-value=0.15 Score=52.00 Aligned_cols=169 Identities=17% Similarity=0.099 Sum_probs=98.2
Q ss_pred cchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchH-HHHH
Q psy14015 91 LLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVK-AELR 169 (318)
Q Consensus 91 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~-~~l~ 169 (318)
++.++..-+-|.-.-||..|+.++..+.+..+...- ..|+-...+-..|+-+.+|.++.+++.....-.+...+ .+..
T Consensus 473 ~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~~~-~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~l 551 (1529)
T KOG0413|consen 473 LYNIVYMRCLDKAAAVRLHALNSLTKILQLQSHREA-FSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDLL 551 (1529)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccch-HHHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhhc
Confidence 566677778899999999999999999876543221 22333333334455588888776665433222221110 1110
Q ss_pred HHHHhhccCCCcccccchhhcCc-cchHHHHHHHHHhhc-CCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcC
Q psy14015 170 SHFRNLCQDDTPMQQGHVWECGS-GVKAELRSHFRNLCQ-DDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQD 247 (318)
Q Consensus 170 ~~~~~l~~~~~~~vR~~v~~~~~-~~~~~ll~~l~~l~~-D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D 247 (318)
.--+++..|..- +...-++ .+.+.++..+..... |+-..||+++...+...-..+......+..+-++..+++|
T Consensus 552 ~~~~~ii~d~~~----~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd 627 (1529)
T KOG0413|consen 552 LDEQQIIQDFKL----KLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRD 627 (1529)
T ss_pred Ccchhhhhhcch----hhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcC
Confidence 000111111100 1111111 123445555554444 7888888888888877776665554456667788888888
Q ss_pred CcHHHHHHHHHHHHHHH
Q psy14015 248 EQDSVRLLAVEACVSIA 264 (318)
Q Consensus 248 ~~~~VR~aa~~~l~~l~ 264 (318)
+...||..++.+++.+.
T Consensus 628 ~~vsvrk~~~~Sltel~ 644 (1529)
T KOG0413|consen 628 RMVSVRKTGADSLTELM 644 (1529)
T ss_pred cchHHHHHHHHHHHHHH
Confidence 88888888888777654
No 139
>KOG0946|consensus
Probab=95.33 E-value=0.28 Score=49.16 Aligned_cols=205 Identities=14% Similarity=0.088 Sum_probs=127.1
Q ss_pred hchhhhhhhhcCChH--HHHHHHHHHHcccccCcCcccchhccchHHhhhccCc-hhHHHHHHHHHHHHHHhhCChhHHh
Q psy14015 51 GELIPFLTETIYDED--EVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVE-ETVVRDKAVESLRLISAQHSPHDLE 127 (318)
Q Consensus 51 ~~llp~l~~l~~D~~--~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~~~~~ 127 (318)
.+-+|.|..-+.... +=|+.|++.|+.|++...-..-.+.+-|++.-|-.|. ++++-..+++++..+..+-..
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~---- 96 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS---- 96 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc----
Confidence 344444443333333 2688899999988763221222344667777776665 466667777777776544221
Q ss_pred hhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhc
Q psy14015 128 AHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ 207 (318)
Q Consensus 128 ~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~ 207 (318)
|. ..|++. -++.++.++++.|. -.+..+..++.++.
T Consensus 97 ----~~----v~dds~----------------qsdd~g~~iae~fi--------------------k~qd~I~lll~~~e 132 (970)
T KOG0946|consen 97 ----PE----VMDDST----------------QSDDLGLWIAEQFI--------------------KNQDNITLLLQSLE 132 (970)
T ss_pred ----hh----hcccch----------------hhhHHHHHHHHHHH--------------------cCchhHHHHHHHHH
Confidence 00 111110 12334555655553 23667899999999
Q ss_pred CCCHHHHHHHHHhhHHHHHHhchhh-----hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChh---hhhHhhHHH
Q psy14015 208 DDTPMVRRAAAGKLGELAKVVEVDY-----LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS---DVEQLVMPT 279 (318)
Q Consensus 208 D~~~~VR~~aa~~L~~l~~~~~~~~-----~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~---~~~~~l~p~ 279 (318)
..+.+||..+++-|..+...-|.+. +...-+..+..++.|...-+|..++--+..+.+..+.- ...+.++..
T Consensus 133 ~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFer 212 (970)
T KOG0946|consen 133 EFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFER 212 (970)
T ss_pred hhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHH
Confidence 9999999999999999998877652 12234556778899999999999988888887665543 234556666
Q ss_pred HHHhccccccccccCCCCCCchhhHHhhhhhhhhh
Q psy14015 280 LRQCSVQIVDHKFCPNNEFHPLELHVISATTLRLM 314 (318)
Q Consensus 280 l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~~~~~~ 314 (318)
|+..+. +.+.++=.+|-.--|-+|
T Consensus 213 LfsIIe-----------eEGg~dGgIVveDCL~ll 236 (970)
T KOG0946|consen 213 LFSIIE-----------EEGGLDGGIVVEDCLILL 236 (970)
T ss_pred HHHHHH-----------hcCCCCCcchHHHHHHHH
Confidence 666666 355555544444433333
No 140
>KOG0392|consensus
Probab=95.33 E-value=0.69 Score=48.76 Aligned_cols=160 Identities=14% Similarity=0.110 Sum_probs=101.8
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHHHHHHHHHHHcccccCcCcccchhccchH
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPP 94 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~ 94 (318)
.+.+.+.+-+++|..|-.+.-.+.++.+.-|..... ++ ++|. -.|.-..-.|..+.+.+
T Consensus 79 ~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~-~~-------led~-~~rll~v~~Ldrf~dfi------------ 137 (1549)
T KOG0392|consen 79 LEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSY-EL-------LEDL-LIRLLCVLALDRFGDFI------------ 137 (1549)
T ss_pred HHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhH-HH-------HHHH-HHHHHHHHHHHHhcccc------------
Confidence 556667777888888888888888877665544211 11 1111 13333333333333222
Q ss_pred HhhhccCc-hhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHH
Q psy14015 95 LESLATVE-ETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFR 173 (318)
Q Consensus 95 l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~ 173 (318)
.|+ -.-||++++.+|..+..+.....+.. .+.++.+++..+.|.+|.+....+..... .+.+...
T Consensus 138 -----sd~vvapVre~caq~L~~~l~~~~~s~~~~-~~~il~q~~~q~~w~ir~Ggll~iky~~a-----ir~d~l~--- 203 (1549)
T KOG0392|consen 138 -----SDNVVAPVREACAQALGAYLKHMDESLIKE-TLDILLQMLRQPNWEIRHGGLLGIKYNVA-----IRQDLLF--- 203 (1549)
T ss_pred -----cccchhhhHHHHHHHHHHHHHhhhhHhhHH-HHHHHHHHHcCcchhheechHHHHHHHHH-----HHHHHHH---
Confidence 222 25789999999999999887765554 67777888888899999875433221111 1222111
Q ss_pred hhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHh
Q psy14015 174 NLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVV 228 (318)
Q Consensus 174 ~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~ 228 (318)
......++.+...++|.+..||..+++.+.-++...
T Consensus 204 -------------------~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~ 239 (1549)
T KOG0392|consen 204 -------------------QLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQ 239 (1549)
T ss_pred -------------------HHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHH
Confidence 123567888899999999999999999988887665
No 141
>KOG2933|consensus
Probab=95.26 E-value=0.28 Score=43.99 Aligned_cols=140 Identities=15% Similarity=0.166 Sum_probs=78.4
Q ss_pred hccCchhHHHHHHHHHHHHHHhhCChhH--HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhh
Q psy14015 98 LATVEETVVRDKAVESLRLISAQHSPHD--LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNL 175 (318)
Q Consensus 98 l~~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l 175 (318)
.+.++++....-++..+..++.+..+.- ....++..+.+-++++.-.|=.+||..++.++..+....-.++
T Consensus 96 ~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~l------- 168 (334)
T KOG2933|consen 96 KLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQEL------- 168 (334)
T ss_pred HhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 3466688888888888888887766421 1112333344444555445555666666655544443322222
Q ss_pred ccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHH
Q psy14015 176 CQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLL 255 (318)
Q Consensus 176 ~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~a 255 (318)
+.++-.++.-..+.+-=||..+-++|-.+.....+.. +++.+...++..++.+|..
T Consensus 169 --------------------d~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~----~L~~L~~~~~~~n~r~r~~ 224 (334)
T KOG2933|consen 169 --------------------DDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK----LLRKLIPILQHSNPRVRAK 224 (334)
T ss_pred --------------------HHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH----HHHHHHHHHhhhchhhhhh
Confidence 2223333333445556677777777777777665533 4444444456666777776
Q ss_pred HHHHHHHHHhhCC
Q psy14015 256 AVEACVSIASLLS 268 (318)
Q Consensus 256 a~~~l~~l~~~l~ 268 (318)
++..+...-.-+|
T Consensus 225 a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 225 AALCFSRCVIRLG 237 (334)
T ss_pred hhccccccceecc
Confidence 6655554444443
No 142
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.22 E-value=2 Score=38.24 Aligned_cols=48 Identities=8% Similarity=0.090 Sum_probs=36.9
Q ss_pred hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHH
Q psy14015 233 LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTL 280 (318)
Q Consensus 233 ~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l 280 (318)
+....+|.+..-+..+...++.-+..++...+..+|.+....++.+++
T Consensus 205 fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw 252 (262)
T PF14500_consen 205 FAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIW 252 (262)
T ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 345688877777788888899888899888888888877666655544
No 143
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=95.15 E-value=2.6 Score=41.88 Aligned_cols=133 Identities=16% Similarity=0.116 Sum_probs=74.2
Q ss_pred cchHHhhhccCc----hhHHHHHHHHHHHHHHhhCCh------hHHhhhHHHHHHHhhc----CCCchhhhhhhhhhhhh
Q psy14015 91 LLPPLESLATVE----ETVVRDKAVESLRLISAQHSP------HDLEAHFVPLVQRLAS----GDWFTSRTSACGLFSVC 156 (318)
Q Consensus 91 llp~l~~l~~d~----~~~VR~~a~~~l~~l~~~~~~------~~~~~~ilp~~~~l~~----d~~~~vR~~a~~~l~~~ 156 (318)
++..+..|+.++ +..+|..|+-++..++...-. ..+.+.++|.+.+.++ ..+...+..++..||.+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 444455555543 467788888888877763211 1122345555554332 22333344454444432
Q ss_pred ccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhc---CCCHHHHHHHHHhhHHHHHHhchhhh
Q psy14015 157 YPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ---DDTPMVRRAAAGKLGELAKVVEVDYL 233 (318)
Q Consensus 157 ~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~---D~~~~VR~~aa~~L~~l~~~~~~~~~ 233 (318)
. ....++.+..++. +....+|.+|+.+|..++... ++.+
T Consensus 474 g-------------------------------------~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~-p~~v 515 (574)
T smart00638 474 G-------------------------------------HPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRD-PRKV 515 (574)
T ss_pred C-------------------------------------ChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhC-chHH
Confidence 1 1223344443333 345789999999999887644 3334
Q ss_pred HhhHHHHHHHhhcCCcHHHHHHHHHHHHHH
Q psy14015 234 KTDIIPMFVNLAQDEQDSVRLLAVEACVSI 263 (318)
Q Consensus 234 ~~~llp~l~~ll~D~~~~VR~aa~~~l~~l 263 (318)
.+.++|+|.+-.. ..+||.+|+..+...
T Consensus 516 ~~~l~~i~~n~~e--~~EvRiaA~~~lm~t 543 (574)
T smart00638 516 QEVLLPIYLNRAE--PPEVRMAAVLVLMET 543 (574)
T ss_pred HHHHHHHHcCCCC--ChHHHHHHHHHHHhc
Confidence 5566766654433 446999998776654
No 144
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=95.13 E-value=0.95 Score=39.50 Aligned_cols=55 Identities=13% Similarity=0.144 Sum_probs=27.2
Q ss_pred hccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhh
Q psy14015 98 LATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFS 154 (318)
Q Consensus 98 l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~ 154 (318)
+.+..++......+++|..++.+-. .....++..+..|.+.+....+..+..++.
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~ 63 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLT 63 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHH
Confidence 4455556666666666666665432 222334444445555554444444444443
No 145
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=95.00 E-value=1 Score=40.96 Aligned_cols=165 Identities=16% Similarity=0.150 Sum_probs=105.1
Q ss_pred hHHHHHHHHHHHHHHhhCChhHHhhh---HHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCC
Q psy14015 104 TVVRDKAVESLRLISAQHSPHDLEAH---FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180 (318)
Q Consensus 104 ~~VR~~a~~~l~~l~~~~~~~~~~~~---ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~ 180 (318)
..|-.+|++....+.+..+++...+. +.|-+..++.-.+..||-....++.+.+-.++...+..
T Consensus 69 sGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~------------- 135 (307)
T PF04118_consen 69 SGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPC------------- 135 (307)
T ss_pred hHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHH-------------
Confidence 68899999999999999988765543 44555555555555666555555544332222211111
Q ss_pred cccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHH
Q psy14015 181 PMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEAC 260 (318)
Q Consensus 181 ~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l 260 (318)
.+-++..++.-+.|+..++-..+..-+-.+...+|.+.+++.+.- .+. .++.+|..+..-+
T Consensus 136 --------------l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl---~ii--~sp~~Rl~al~~l 196 (307)
T PF04118_consen 136 --------------LKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWL---CII--TSPSRRLGALNYL 196 (307)
T ss_pred --------------HHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHH---HHh--cCcchhHHHHHHH
Confidence 133444455557789999999999999999999998765555443 333 4455888877765
Q ss_pred HHHHhhCC------h-hh---h----hHhhHHHHHHhccccccccccCCCCCCchhhHHhhhhhhhhhh
Q psy14015 261 VSIASLLS------Q-SD---V----EQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISATTLRLMR 315 (318)
Q Consensus 261 ~~l~~~l~------~-~~---~----~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~~~~~~~ 315 (318)
..-...+. . +. + ...++..+..++.| + --.++.+.||+|-
T Consensus 197 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D----------~-----~iLVqR~~LDlLl 250 (307)
T PF04118_consen 197 LRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLED----------E-----NILVQRGFLDLLL 250 (307)
T ss_pred HHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCC----------c-----hHHHHHHHHHHHH
Confidence 55443333 0 00 1 13478889999999 5 4567777777764
No 146
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.98 E-value=2.2 Score=37.24 Aligned_cols=182 Identities=18% Similarity=0.199 Sum_probs=99.3
Q ss_pred hhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHh
Q psy14015 59 ETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRL 137 (318)
Q Consensus 59 ~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l 137 (318)
.+.+..++ +...+.+.|+.++..- . .....++..+..+...+....+..+...+..+-..-+. ..|.+..+
T Consensus 8 ~l~~~~~~~~~~~~L~~L~~l~~~~-~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r------~f~~L~~~ 79 (234)
T PF12530_consen 8 KLGKISDPELQLPLLEALPSLACHK-N-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDR------HFPFLQPL 79 (234)
T ss_pred HhcCCCChHHHHHHHHHHHHHhccC-c-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCch------HHHHHHHH
Confidence 35555555 7778888888876521 1 33444666667776666666655666666666544322 11333322
Q ss_pred hcC-------------CCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHH
Q psy14015 138 ASG-------------DWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRN 204 (318)
Q Consensus 138 ~~d-------------~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~ 204 (318)
+.+ ..|...++. +..+.++|...+ ....++++.+..
T Consensus 80 L~~~~~r~~~~~~~~~~~~~~~i~~-------------------a~s~~~ic~~~p------------~~g~~ll~~ls~ 128 (234)
T PF12530_consen 80 LLLLILRIPSSFSSKDEFWECLISI-------------------AASIRDICCSRP------------DHGVDLLPLLSG 128 (234)
T ss_pred HHHHHhhcccccCCCcchHHHHHHH-------------------HHHHHHHHHhCh------------hhHHHHHHHHHH
Confidence 221 223333332 233444444332 133678888888
Q ss_pred hh-cCCCHHHHHHHHHhhHHHHHH--hchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCCh--------hhhh
Q psy14015 205 LC-QDDTPMVRRAAAGKLGELAKV--VEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ--------SDVE 273 (318)
Q Consensus 205 l~-~D~~~~VR~~aa~~L~~l~~~--~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~--------~~~~ 273 (318)
.+ ++.++.++..+.+.+..++.. ++--..+..+.| ++-.|.. -.....+..+...++. +...
T Consensus 129 ~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~---~l~~~~r----p~v~~~l~~l~~l~~~~~~~~e~~~~~~ 201 (234)
T PF12530_consen 129 CLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQK---KLSLDYR----PLVLKSLCSLFALVPQGAVDSEEYEELK 201 (234)
T ss_pred HHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH---hcCCccc----hHHHHHHHHHHHHhccccCChhhhhHHH
Confidence 88 788899999999999999942 222122222332 2233334 4444444444443322 2244
Q ss_pred HhhHHHHHHhccc
Q psy14015 274 QLVMPTLRQCSVQ 286 (318)
Q Consensus 274 ~~l~p~l~~ll~D 286 (318)
..++..+......
T Consensus 202 ~~~l~~lW~~~~~ 214 (234)
T PF12530_consen 202 RQILQLLWEYTSS 214 (234)
T ss_pred HHHHHHHHhhccc
Confidence 5688888888877
No 147
>KOG1293|consensus
Probab=94.96 E-value=0.55 Score=46.11 Aligned_cols=137 Identities=11% Similarity=-0.004 Sum_probs=91.1
Q ss_pred hhHHHHHHHHHHHHHHhhCC---hhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCC
Q psy14015 103 ETVVRDKAVESLRLISAQHS---PHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDD 179 (318)
Q Consensus 103 ~~~VR~~a~~~l~~l~~~~~---~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~ 179 (318)
+..++.+|..++..+..... .+.-...+...+.++.+||+.++..++.+.+..++-.++.. +..
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~-ksk------------ 456 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNL-KSK------------ 456 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccH-HHH------------
Confidence 46777888777777665432 11112223333444559999999999888887776655542 222
Q ss_pred CcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh---hHhh-HHHHHHHhhcCCcHHHHHH
Q psy14015 180 TPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY---LKTD-IIPMFVNLAQDEQDSVRLL 255 (318)
Q Consensus 180 ~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~---~~~~-llp~l~~ll~D~~~~VR~a 255 (318)
+.....+..+.++..|+.+.+|+.+...|-.+.-....+. ...+ -...+..+.+||+|.|...
T Consensus 457 -------------fl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq 523 (678)
T KOG1293|consen 457 -------------FLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQ 523 (678)
T ss_pred -------------HHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHH
Confidence 1334567899999999999999999988888775433221 1112 2335567889999999999
Q ss_pred HHHHHHHHHh
Q psy14015 256 AVEACVSIAS 265 (318)
Q Consensus 256 a~~~l~~l~~ 265 (318)
+...+.++.-
T Consensus 524 ~fqllRNl~c 533 (678)
T KOG1293|consen 524 CFQLLRNLTC 533 (678)
T ss_pred HHHHHHHhhc
Confidence 8888777763
No 148
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=94.85 E-value=1.6 Score=40.18 Aligned_cols=86 Identities=15% Similarity=0.070 Sum_probs=54.4
Q ss_pred HHHHHHHhHHHHHHhhChHhHhhchhhhhhhhc-CChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHH
Q psy14015 29 LRLNSIKKLSTIALALGQERTRGELIPFLTETI-YDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVV 106 (318)
Q Consensus 29 ~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~-~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~V 106 (318)
.|...++.|..+.. ......+...+..++ ++.+| ....+...|..-...+ +......++..+..-++|....+
T Consensus 3 ~r~~~~~~L~~l~~----~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~-~~~~~~~~~~~~~kGl~~kk~~v 77 (339)
T PF12074_consen 3 QRVLHASMLSSLPS----SSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL-SSELPKKVVDAFKKGLKDKKPPV 77 (339)
T ss_pred HHHHHHHHHHhCCC----cchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh-CcCCCHHHHHHHHHHhcCCCCcH
Confidence 35555565555432 113334455554444 34456 7777777777666555 33445667777877778887779
Q ss_pred HHHHHHHHHHHHh
Q psy14015 107 RDKAVESLRLISA 119 (318)
Q Consensus 107 R~~a~~~l~~l~~ 119 (318)
|......++....
T Consensus 78 R~~w~~~~~~~~~ 90 (339)
T PF12074_consen 78 RRAWLLCLGEALW 90 (339)
T ss_pred HHHHHHHHHHHHh
Confidence 9999988888875
No 149
>KOG1822|consensus
Probab=94.82 E-value=1.5 Score=48.16 Aligned_cols=224 Identities=15% Similarity=0.163 Sum_probs=122.8
Q ss_pred hhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchH-HhhhccCchhHHHHHHHHHHHHHHhh
Q psy14015 43 ALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPP-LESLATVEETVVRDKAVESLRLISAQ 120 (318)
Q Consensus 43 ~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~-l~~l~~d~~~~VR~~a~~~l~~l~~~ 120 (318)
.+|++..+.--+.++...+....+ .|..+++.+..++..+|...+...+... ++.+.+-.+..-|..-.-+++-+-.+
T Consensus 867 ~lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhky 946 (2067)
T KOG1822|consen 867 SLGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKY 946 (2067)
T ss_pred ccCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHh
Confidence 367776555555555566666667 8999999999999888876655555544 45554433444454433334434333
Q ss_pred ---CChhHHhhhHHHHHHHhhcCCC-chhhhhhhhhhhhhccccCcchHH----HHHHHHHhhccCCCc--ccccc---h
Q psy14015 121 ---HSPHDLEAHFVPLVQRLASGDW-FTSRTSACGLFSVCYPRVTAGVKA----ELRSHFRNLCQDDTP--MQQGH---V 187 (318)
Q Consensus 121 ---~~~~~~~~~ilp~~~~l~~d~~-~~vR~~a~~~l~~~~~~~~~~~~~----~l~~~~~~l~~~~~~--~vR~~---v 187 (318)
...++....-+.++..+..|+. +.|+..+...+..+...-....+. .+.....-+.+..+- +|++. +
T Consensus 947 vgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~ 1026 (2067)
T KOG1822|consen 947 VGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRC 1026 (2067)
T ss_pred ccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccc
Confidence 3444444445567788888864 477777666665544433332222 121112222222221 12221 1
Q ss_pred h-----------hcCcc--------chHHHHHHH---HHhhcC-CCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHh
Q psy14015 188 W-----------ECGSG--------VKAELRSHF---RNLCQD-DTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNL 244 (318)
Q Consensus 188 ~-----------~~~~~--------~~~~ll~~l---~~l~~D-~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l 244 (318)
. .+|+. ....+.... -.++.+ +++.+--.++++|-.+.-+-....-.+.+++.+..+
T Consensus 1027 ~~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~ 1106 (2067)
T KOG1822|consen 1027 FNGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSL 1106 (2067)
T ss_pred cccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHH
Confidence 1 12221 111111111 122233 467777777777777766655544456688888888
Q ss_pred hcCCcHHHHHHHHHHHHHHHhh
Q psy14015 245 AQDEQDSVRLLAVEACVSIASL 266 (318)
Q Consensus 245 l~D~~~~VR~aa~~~l~~l~~~ 266 (318)
+..+.-..|.+.+.++.++..-
T Consensus 1107 l~s~~~i~r~~~~~clrql~~R 1128 (2067)
T KOG1822|consen 1107 LSSSYLILRRASFSCLRQLVQR 1128 (2067)
T ss_pred hcchhhhhhhhHHhhhhHHhHH
Confidence 8888888888777777777653
No 150
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=94.80 E-value=0.15 Score=42.60 Aligned_cols=151 Identities=17% Similarity=0.172 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHhhCChhHHhh---hHHH------------HHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHH
Q psy14015 106 VRDKAVESLRLISAQHSPHDLEA---HFVP------------LVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRS 170 (318)
Q Consensus 106 VR~~a~~~l~~l~~~~~~~~~~~---~ilp------------~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~ 170 (318)
||..|+.++..+++..++..... .++| ++.-+..|++..+|..|+..+..+..+...- +
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~----L-- 75 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPF----L-- 75 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHH----H--
Confidence 67777777777776644322111 1222 2223567888888888888887776553211 1
Q ss_pred HHHhhccCCCcccccchh----hcCccchHHHHHHHHHhhcCC-CHHHHHHHHHhhHHHHHHhc----hhhhHhhHHHHH
Q psy14015 171 HFRNLCQDDTPMQQGHVW----ECGSGVKAELRSHFRNLCQDD-TPMVRRAAAGKLGELAKVVE----VDYLKTDIIPMF 241 (318)
Q Consensus 171 ~~~~l~~~~~~~vR~~v~----~~~~~~~~~ll~~l~~l~~D~-~~~VR~~aa~~L~~l~~~~~----~~~~~~~llp~l 241 (318)
..+.+.... +.... .++ ..-.++...+...++.+ +..+=-.+.+++..+..... +......++..+
T Consensus 76 ---~~Ae~~~~~-~~sFtslS~tLa-~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v 150 (182)
T PF13251_consen 76 ---AQAEESKGP-SGSFTSLSSTLA-SMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQV 150 (182)
T ss_pred ---HHHHhcCCC-CCCcccHHHHHH-HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHH
Confidence 111111000 00000 000 11234556666666655 56777788899988887543 223456677777
Q ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhC
Q psy14015 242 VNLAQDEQDSVRLLAVEACVSIASLL 267 (318)
Q Consensus 242 ~~ll~D~~~~VR~aa~~~l~~l~~~l 267 (318)
..++.+.+..||.++..+++.+....
T Consensus 151 ~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 151 RPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 78888888889999998888887543
No 151
>KOG1525|consensus
Probab=94.75 E-value=0.2 Score=53.47 Aligned_cols=137 Identities=17% Similarity=0.091 Sum_probs=72.2
Q ss_pred hhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh--HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchH
Q psy14015 88 VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH--DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVK 165 (318)
Q Consensus 88 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~ 165 (318)
...++|.|..-+..++..+|..|+..++.+....... .....+...+..-++|.+..||..+++....++..-+...
T Consensus 257 l~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~- 335 (1266)
T KOG1525|consen 257 LLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIA- 335 (1266)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhh-
Confidence 3445666655555556666666666666655443221 1122244444555566666666666666555443322211
Q ss_pred HHHHHHHHhhc-cCCCccccc--chhh--c--Cc----cchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHH
Q psy14015 166 AELRSHFRNLC-QDDTPMQQG--HVWE--C--GS----GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKV 227 (318)
Q Consensus 166 ~~l~~~~~~l~-~~~~~~vR~--~v~~--~--~~----~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~ 227 (318)
... ...-.++ .+.++.+|. .|.. . .+ .... ++..+...+.|..|.||+.|...|.++-+.
T Consensus 336 ~~~-~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 336 KAS-TILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred hHH-HHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 110 1111222 233333332 1110 0 00 1223 667777888999999999999999999874
No 152
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=94.74 E-value=0.44 Score=44.56 Aligned_cols=136 Identities=14% Similarity=0.194 Sum_probs=84.7
Q ss_pred chHHHHHHHhcCccHH-HHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcC----C--hHH-HHHHHHHHHcccccCc--
Q psy14015 13 YPIAVLIDELKNEDVQ-LRLNSIKKLSTIALALGQERTRGELIPFLTETIY----D--EDE-VLLALAEQLGTFTPNV-- 82 (318)
Q Consensus 13 ~~i~~l~~~l~~~~~~-~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~----D--~~~-VR~~aa~~L~~l~~~~-- 82 (318)
+|.+-+-..+..++.. -|.+|+.-|..+++..+.. ..+-+..++..+++ + .+| -+.+|...++.++...
T Consensus 210 dP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~-v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t 288 (370)
T PF08506_consen 210 DPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQ-VTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGST 288 (370)
T ss_dssp SHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--
T ss_pred CHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhcc
Confidence 3555555666655655 4667777777777665543 33344445555443 3 445 6677777766665432
Q ss_pred ---Cc----------ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhh
Q psy14015 83 ---GG----------PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSA 149 (318)
Q Consensus 83 ---~~----------~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a 149 (318)
|. +.+.+.++|.|. -..+..+.+|..|++-+..+-+.++++...+ ++|.+.+.+++++.-|+..|
T Consensus 289 ~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~-~~~~l~~~L~~~~~vv~tyA 366 (370)
T PF08506_consen 289 TKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQ-IFPLLVNHLQSSSYVVHTYA 366 (370)
T ss_dssp BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHH-HHHHHHHHTTSS-HHHHHHH
T ss_pred ccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHH-HHHHHHHHhCCCCcchhhhh
Confidence 11 223566778777 2334568899999999999999999877666 89999999999888888777
Q ss_pred hh
Q psy14015 150 CG 151 (318)
Q Consensus 150 ~~ 151 (318)
|.
T Consensus 367 A~ 368 (370)
T PF08506_consen 367 AI 368 (370)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 153
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.71 E-value=0.49 Score=34.86 Aligned_cols=83 Identities=20% Similarity=0.164 Sum_probs=65.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHhhHHHHHHhc-hhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhH
Q psy14015 199 RSHFRNLCQDDTPMVRRAAAGKLGELAKVVE-VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVM 277 (318)
Q Consensus 199 l~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~-~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~ 277 (318)
+....+.++|+.+-||-.+...|.++...-. .......++..+...++|++..|=-+|+.++..++...+. .++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~-----~vl 79 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD-----EVL 79 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-----HHH
Confidence 4455666789999999999999999987654 3333567999999999999999999999999999987644 356
Q ss_pred HHHHHhccc
Q psy14015 278 PTLRQCSVQ 286 (318)
Q Consensus 278 p~l~~ll~D 286 (318)
|.++..-.|
T Consensus 80 ~~L~~~y~~ 88 (92)
T PF10363_consen 80 PILLDEYAD 88 (92)
T ss_pred HHHHHHHhC
Confidence 667666555
No 154
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.65 E-value=1.6 Score=43.56 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=88.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh--------hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChh
Q psy14015 199 RSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD--------YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 270 (318)
Q Consensus 199 l~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~--------~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~ 270 (318)
+..|.++++.++.-.|.+.....+.+...+..+ ...+.++..+..-+.|.++.+|-.+...+..+++.-.+.
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 467789999999999999999999998765332 134678888888899999999999999988888654443
Q ss_pred h-hhHhhHHHHHHhccccccccccCCCCCCchhhHHhhhhhhhhhhc
Q psy14015 271 D-VEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISATTLRLMRH 316 (318)
Q Consensus 271 ~-~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~~~~~~~~ 316 (318)
. ..+.+.......+.| ...-||-+.||--+==+|+|
T Consensus 381 ~~~r~ev~~lv~r~lqD----------rss~VRrnaikl~SkLL~~H 417 (1128)
T COG5098 381 VGRRHEVIRLVGRRLQD----------RSSVVRRNAIKLCSKLLMRH 417 (1128)
T ss_pred cchHHHHHHHHHHHhhh----------hhHHHHHHHHHHHHHHHhcC
Confidence 2 235688889999999 88999999998887778888
No 155
>KOG1020|consensus
Probab=94.57 E-value=0.88 Score=48.83 Aligned_cols=128 Identities=13% Similarity=0.077 Sum_probs=89.8
Q ss_pred hhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhc
Q psy14015 128 AHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ 207 (318)
Q Consensus 128 ~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~ 207 (318)
..++..+...+..+...+|.-|...+..+...-+ .| -..+.+...+..-+.
T Consensus 815 D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp--------------------~v---------L~~~dvq~~Vh~R~~ 865 (1692)
T KOG1020|consen 815 DPYLKLILSVLGENAIALRTKALKCLSMIVEADP--------------------SV---------LSRPDVQEAVHGRLN 865 (1692)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcCh--------------------Hh---------hcCHHHHHHHHHhhc
Confidence 3455556666666777888888777765533211 10 123667778888899
Q ss_pred CCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccc
Q psy14015 208 DDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQ 286 (318)
Q Consensus 208 D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D 286 (318)
|....||.+|..-+|.+.-.. +.........+..-..|+.-.||+.+.+.+-.++.-.+.-.....++--++.-.+|
T Consensus 866 DssasVREAaldLvGrfvl~~--~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~D 942 (1692)
T KOG1020|consen 866 DSSASVREAALDLVGRFVLSI--PELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVND 942 (1692)
T ss_pred cchhHHHHHHHHHHhhhhhcc--HHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcc
Confidence 999999999999999887643 22344555666677799999999999999999987665544445566666777777
No 156
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.54 E-value=0.19 Score=37.07 Aligned_cols=60 Identities=12% Similarity=-0.058 Sum_probs=48.9
Q ss_pred HHHhhcCCcHHHHHHHHHHHHHHHhhCC-hhhhhHhhHHHHHHhccccccccccCCCCCCchhhHHhhhhh
Q psy14015 241 FVNLAQDEQDSVRLLAVEACVSIASLLS-QSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISATT 310 (318)
Q Consensus 241 l~~ll~D~~~~VR~aa~~~l~~l~~~l~-~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~~ 310 (318)
....++||..-||......+..+...-. .....+.++..+...++| +++.|.+++|+...
T Consensus 8 al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d----------~DsyVYL~aI~~L~ 68 (92)
T PF10363_consen 8 ALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKD----------EDSYVYLNAIKGLA 68 (92)
T ss_pred HHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCC----------CCchHHHHHHHHHH
Confidence 3456699999999988888888776655 444556799999999999 99999999998753
No 157
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=94.51 E-value=2.1 Score=47.82 Aligned_cols=257 Identities=12% Similarity=0.112 Sum_probs=141.7
Q ss_pred cCccHHHHHHHHHhHHHHHHh-hChH-----hHhhc-hhhhhhhhcCChH-HHHHHHHHHHcccccCcCc--ccchhccc
Q psy14015 23 KNEDVQLRLNSIKKLSTIALA-LGQE-----RTRGE-LIPFLTETIYDED-EVLLALAEQLGTFTPNVGG--PEYVHCLL 92 (318)
Q Consensus 23 ~~~~~~~R~~~~~~L~~ia~~-lg~~-----~~~~~-llp~l~~l~~D~~-~VR~~aa~~L~~l~~~~~~--~~~~~~ll 92 (318)
-+.+..++.-++..|..++.. +..+ .++++ |.||..-+..... +||.-+.+-+.++...-+. ..=|..++
T Consensus 1147 ~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF 1226 (1780)
T PLN03076 1147 CSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMF 1226 (1780)
T ss_pred CCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHH
Confidence 355677888999998888765 2222 23444 4555543433333 4888888888877543222 11367788
Q ss_pred hHHhhhccCchhHHHHHHHHHHHHHHhh-CC---h--hHHhhhHHHHHHHhhcCC-CchhhhhhhhhhhhhccccCcchH
Q psy14015 93 PPLESLATVEETVVRDKAVESLRLISAQ-HS---P--HDLEAHFVPLVQRLASGD-WFTSRTSACGLFSVCYPRVTAGVK 165 (318)
Q Consensus 93 p~l~~l~~d~~~~VR~~a~~~l~~l~~~-~~---~--~~~~~~ilp~~~~l~~d~-~~~vR~~a~~~l~~~~~~~~~~~~ 165 (318)
.++..-..++++.+-..|.+++..+... ++ . ......++.-+.++++.. ...+=..|+..|..+...+.+..
T Consensus 1227 ~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~- 1305 (1780)
T PLN03076 1227 MVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGD- 1305 (1780)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcc-
Confidence 8888877888887778888888776543 21 1 122233444444555433 23333455555544332221100
Q ss_pred HHHHHHHHhhccCCC-------cccc----cchhhc--Cc---cchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhc
Q psy14015 166 AELRSHFRNLCQDDT-------PMQQ----GHVWEC--GS---GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE 229 (318)
Q Consensus 166 ~~l~~~~~~l~~~~~-------~~vR----~~v~~~--~~---~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~ 229 (318)
+........ +... .....+ .+ ..+-.++..|.+++.|+..+||..|...|-.+....|
T Consensus 1306 ------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG 1379 (1780)
T PLN03076 1306 ------LGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHG 1379 (1780)
T ss_pred ------ccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhh
Confidence 000000000 0000 000000 00 1223344555666889999999999999988887776
Q ss_pred hh--------hhHhhHHHHHHHhhc----------------------CCcHHHHHHHHHHHHHHHhhCChhh-hhHhhHH
Q psy14015 230 VD--------YLKTDIIPMFVNLAQ----------------------DEQDSVRLLAVEACVSIASLLSQSD-VEQLVMP 278 (318)
Q Consensus 230 ~~--------~~~~~llp~l~~ll~----------------------D~~~~VR~aa~~~l~~l~~~l~~~~-~~~~l~p 278 (318)
.. .+...+.|+|..+-. |-..|...++..++..+...|.+-. ....++|
T Consensus 1380 ~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~ 1459 (1780)
T PLN03076 1380 HLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLK 1459 (1780)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 133468888876531 1123567888888888887776532 2334666
Q ss_pred HHHHhccc
Q psy14015 279 TLRQCSVQ 286 (318)
Q Consensus 279 ~l~~ll~D 286 (318)
-++.+|..
T Consensus 1460 ~~l~ll~~ 1467 (1780)
T PLN03076 1460 KVLMLLVS 1467 (1780)
T ss_pred HHHHHHHH
Confidence 66666654
No 158
>KOG1822|consensus
Probab=94.45 E-value=0.96 Score=49.58 Aligned_cols=108 Identities=22% Similarity=0.234 Sum_probs=80.1
Q ss_pred HHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhh-hhcCChHH-HHHHHHHHHcccccCcCcccchhccc-
Q psy14015 16 AVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLT-ETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLL- 92 (318)
Q Consensus 16 ~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~-~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~ll- 92 (318)
.-....+-..++..|..+...++.++...|+..+...+..+.. ++.+-.++ -|....-.++.+-+.+|+-...+.+.
T Consensus 879 ~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t 958 (2067)
T KOG1822|consen 879 TLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNT 958 (2067)
T ss_pred HHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhccc
Confidence 3445677889999999999999999988887765555555544 44444556 77777788887777666543344444
Q ss_pred --hHHhhhccCchh-HHHHHHHHHHHHHHhhCCh
Q psy14015 93 --PPLESLATVEET-VVRDKAVESLRLISAQHSP 123 (318)
Q Consensus 93 --p~l~~l~~d~~~-~VR~~a~~~l~~l~~~~~~ 123 (318)
.++..+..|..+ .|+..++.++..+....++
T Consensus 959 ~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p 992 (2067)
T KOG1822|consen 959 SVSILLALATDSTSPVVQTWSLHALALILDSSGP 992 (2067)
T ss_pred HHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCc
Confidence 478888888865 9999999999999988766
No 159
>KOG1525|consensus
Probab=94.35 E-value=0.68 Score=49.59 Aligned_cols=157 Identities=13% Similarity=0.071 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCc----chHHHHHHHHHhhccCC
Q psy14015 104 TVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA----GVKAELRSHFRNLCQDD 179 (318)
Q Consensus 104 ~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~----~~~~~l~~~~~~l~~~~ 179 (318)
..++...-+.+.++-...+. ....++|.+..=+..++..+|..|..++|.++..... ...... ..|-.=+.|.
T Consensus 236 ~~~~~~~he~i~~L~~~~p~--ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~-~~fl~r~~D~ 312 (1266)
T KOG1525|consen 236 SSLKIKYHELILELWRIAPQ--LLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLW-SAFLGRFNDI 312 (1266)
T ss_pred cchhhHHHHHHHHHHHhhHH--HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHH-HHHHHHhccC
Confidence 33444444555555443322 2334888887666666788999999999998766432 222232 3343445566
Q ss_pred CcccccchhhcCc-------cchH--HHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcH
Q psy14015 180 TPMQQGHVWECGS-------GVKA--ELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQD 250 (318)
Q Consensus 180 ~~~vR~~v~~~~~-------~~~~--~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~ 250 (318)
.+.||.+++..++ ...+ ...-.+.....|++.++|..++.....+..+. -..+.. ++..+...+.|-.|
T Consensus 313 ~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~-l~~~~~-ll~~~~eR~rDKk~ 390 (1266)
T KOG1525|consen 313 SVEVRMECVESIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFK-LVYIPL-LLKLVAERLRDKKI 390 (1266)
T ss_pred ChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhh-hhhhHH-HHHHHHHHHhhhhH
Confidence 7788886554332 1111 12222333445666667665444443333321 111223 78888899999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy14015 251 SVRLLAVEACVSIAS 265 (318)
Q Consensus 251 ~VR~aa~~~l~~l~~ 265 (318)
.||.-|+..+.++.+
T Consensus 391 ~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 391 KVRKQAMNGLAQLYK 405 (1266)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999887
No 160
>KOG2213|consensus
Probab=94.31 E-value=3.3 Score=38.52 Aligned_cols=87 Identities=16% Similarity=0.163 Sum_probs=56.0
Q ss_pred hchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccC------------chhHHHHHHHHHHHHH
Q psy14015 51 GELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATV------------EETVVRDKAVESLRLI 117 (318)
Q Consensus 51 ~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d------------~~~~VR~~a~~~l~~l 117 (318)
.+-+..-..+++|++- ||+.|.+.|+.||+- +....+.|.+.+|++. -++.+|++++.-+..=
T Consensus 60 ~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~----d~~~rv~d~l~qLLnk~sl~~Lf~~~~~~D~~irek~l~fi~tK 135 (460)
T KOG2213|consen 60 DEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG----DALSRVNDVLVQLLNKASLTGLFGQIEVGDEQIREKVLKFIRTK 135 (460)
T ss_pred hHHHHhhhccccccchhhHHHHHhccchhccC----chhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 3445666678888877 999999999999872 4556666666665531 2567777766555442
Q ss_pred HhhCCh----hHHhhhHHHHHHHhhcCC
Q psy14015 118 SAQHSP----HDLEAHFVPLVQRLASGD 141 (318)
Q Consensus 118 ~~~~~~----~~~~~~ilp~~~~l~~d~ 141 (318)
.-.+.. +.+..+++..+++.+.|.
T Consensus 136 l~~l~~e~L~kevE~~iv~eikkal~dV 163 (460)
T KOG2213|consen 136 LITLKGEVLTKEVERHIVDEIKKALEDV 163 (460)
T ss_pred hhcccHHHhhhHHHHHHHHHHHHHHHhc
Confidence 222222 345666777777666653
No 161
>KOG0392|consensus
Probab=94.30 E-value=0.29 Score=51.42 Aligned_cols=139 Identities=14% Similarity=0.132 Sum_probs=87.3
Q ss_pred HHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHH--HhhccCCCcccccchhhcCccchHHHHHHHHHhhc
Q psy14015 130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHF--RNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ 207 (318)
Q Consensus 130 ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~--~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~ 207 (318)
++..+....-++.|.+|..++-.+..+...-........++.+ +.+| -..+..|-++..
T Consensus 78 ~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~-------------------v~~Ldrf~dfis 138 (1549)
T KOG0392|consen 78 FLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLC-------------------VLALDRFGDFIS 138 (1549)
T ss_pred HHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHH-------------------HHHHHHhccccc
Confidence 4444555556688999988877666554433333222222111 1111 122444555555
Q ss_pred CCC-HHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCCh--hhhhHhhHHHHHHhc
Q psy14015 208 DDT-PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ--SDVEQLVMPTLRQCS 284 (318)
Q Consensus 208 D~~-~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~--~~~~~~l~p~l~~ll 284 (318)
|.. ..||.++++.|+.+...+.... ..+.+.++.+++.-|.|.+|..=+.++......... ......+++.+..-|
T Consensus 139 d~vvapVre~caq~L~~~l~~~~~s~-~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L 217 (1549)
T KOG0392|consen 139 DNVVAPVREACAQALGAYLKHMDESL-IKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGL 217 (1549)
T ss_pred ccchhhhHHHHHHHHHHHHHhhhhHh-hHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 554 6899999999999998776543 366778888999999999998766665554432111 133456788889999
Q ss_pred cccc
Q psy14015 285 VQIV 288 (318)
Q Consensus 285 ~D~~ 288 (318)
.|++
T Consensus 218 ~ds~ 221 (1549)
T KOG0392|consen 218 EDSD 221 (1549)
T ss_pred hhcc
Confidence 9944
No 162
>KOG1020|consensus
Probab=94.30 E-value=0.49 Score=50.64 Aligned_cols=144 Identities=17% Similarity=0.170 Sum_probs=97.7
Q ss_pred CCch-HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccch
Q psy14015 11 SLYP-IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYV 88 (318)
Q Consensus 11 ~l~~-i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~ 88 (318)
++++ +..++..+..+.+.+|-.|++-|+.|..+=..--+.+.+.-.+..-+.|+.. ||.+|.+-+|.+.- ..++..
T Consensus 813 sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl--~~~e~~ 890 (1692)
T KOG1020|consen 813 SFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVL--SIPELI 890 (1692)
T ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhh--ccHHHH
Confidence 4455 3445567777778899999999999975522222345566677777777776 99999999998853 345555
Q ss_pred hccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhh
Q psy14015 89 HCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVC 156 (318)
Q Consensus 89 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~ 156 (318)
...+..+.+-..|+.-.||..++..+..++...+.=.....+..-+..-.+|+.-.+..-+.+.|-++
T Consensus 891 ~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 891 FQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 55667777778899999999999999999987665221112333333345666555666666655543
No 163
>KOG1991|consensus
Probab=94.22 E-value=1.4 Score=45.31 Aligned_cols=173 Identities=16% Similarity=0.093 Sum_probs=100.5
Q ss_pred ccchhccchHHhhhcc------CchhHHHH--HHHHHHHHHHhhCCh-----hHHhhhHHHHHHHhhcCCCchhhhhhhh
Q psy14015 85 PEYVHCLLPPLESLAT------VEETVVRD--KAVESLRLISAQHSP-----HDLEAHFVPLVQRLASGDWFTSRTSACG 151 (318)
Q Consensus 85 ~~~~~~llp~l~~l~~------d~~~~VR~--~a~~~l~~l~~~~~~-----~~~~~~ilp~~~~l~~d~~~~vR~~a~~ 151 (318)
++..+.+++.+.+.+. .+++..|. .|+..++.++..+.+ ......+++++.-.++++.=..|.-||+
T Consensus 405 ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~ 484 (1010)
T KOG1991|consen 405 KETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACW 484 (1010)
T ss_pred hhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHH
Confidence 3445556666655554 55555554 588888888877654 3344457777777778888788888988
Q ss_pred hhhhhc-cccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhc-CCCHHHHHHHHHhhHHHHHHhc
Q psy14015 152 LFSVCY-PRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ-DDTPMVRRAAAGKLGELAKVVE 229 (318)
Q Consensus 152 ~l~~~~-~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~-D~~~~VR~~aa~~L~~l~~~~~ 229 (318)
.++.+. -.++.. ....+.+....+.+. |.+--||-.||-+|-.+.....
T Consensus 485 vl~~~~~~df~d~-----------------------------~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~ 535 (1010)
T KOG1991|consen 485 VLSQFSSIDFKDP-----------------------------NNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQE 535 (1010)
T ss_pred HHHHHHhccCCCh-----------------------------HHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcch
Confidence 887654 222211 112344555555554 8888999999999998886543
Q ss_pred h--hhhHhhHHHHHH---HhhcCCcHHHHHHHHH-HHHHHHhhCChh--hhhHhhHHHHHHhccc
Q psy14015 230 V--DYLKTDIIPMFV---NLAQDEQDSVRLLAVE-ACVSIASLLSQS--DVEQLVMPTLRQCSVQ 286 (318)
Q Consensus 230 ~--~~~~~~llp~l~---~ll~D~~~~VR~aa~~-~l~~l~~~l~~~--~~~~~l~p~l~~ll~D 286 (318)
. +.+...+-|.+. ++.++.+-..=..+++ -+..+++-+.+- .-.++|...+.+++.+
T Consensus 536 ~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~ 600 (1010)
T KOG1991|consen 536 QADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQT 600 (1010)
T ss_pred hhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhc
Confidence 2 223344444444 4445444333222222 222333333332 2346677778888874
No 164
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=94.06 E-value=5.5 Score=40.47 Aligned_cols=135 Identities=15% Similarity=0.117 Sum_probs=82.6
Q ss_pred HHHHhcCccHHHHHHHHHhHHHHHHhhCh--HhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCc--ccchhccc
Q psy14015 18 LIDELKNEDVQLRLNSIKKLSTIALALGQ--ERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG--PEYVHCLL 92 (318)
Q Consensus 18 l~~~l~~~~~~~R~~~~~~L~~ia~~lg~--~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~--~~~~~~ll 92 (318)
+...++.++...|. +..-|..++....- .-....+++.|.++++.++. +...+..-|.++.-.-.. .-....++
T Consensus 255 ~~~l~~kQeqLlrv-~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV 333 (708)
T PF05804_consen 255 LQTLIRKQEQLLRV-AFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIV 333 (708)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCH
Confidence 33444555555553 33445555533221 22355788888888876554 878788888877532111 12234578
Q ss_pred hHHhhhccCchhHHHHHHHHHHHHHHhhCCh--hHHhhhHHHHHHHhhcCCCchhhhhhhhhhhh
Q psy14015 93 PPLESLATVEETVVRDKAVESLRLISAQHSP--HDLEAHFVPLVQRLASGDWFTSRTSACGLFSV 155 (318)
Q Consensus 93 p~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~ 155 (318)
|-+..++..++...+..++..|..++-.-.- .-+..-++|.+..+++++. .|..+..+|..
T Consensus 334 ~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~ 396 (708)
T PF05804_consen 334 EKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYN 396 (708)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHH
Confidence 8888888888888899999988888743221 2233347888889998874 34455555443
No 165
>KOG1293|consensus
Probab=93.96 E-value=4.3 Score=40.13 Aligned_cols=133 Identities=16% Similarity=0.130 Sum_probs=84.1
Q ss_pred HHHHHHHHHcccccCcC----cccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh---hHHhhhHHHHHHHhhc
Q psy14015 67 VLLALAEQLGTFTPNVG----GPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP---HDLEAHFVPLVQRLAS 139 (318)
Q Consensus 67 VR~~aa~~L~~l~~~~~----~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~ilp~~~~l~~ 139 (318)
++.+++.-+..+...+. +... ..+..-+.+++.|++..|...++.++..++=.++. ..+..-.+..+.++..
T Consensus 393 ~~aaa~l~~~s~srsV~aL~tg~~~-~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~ 471 (678)
T KOG1293|consen 393 FVAAALLCLKSFSRSVSALRTGLKR-NDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLT 471 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcc-chhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhc
Confidence 66777776666654321 1111 22333344555999999999999999998866544 3344558889999999
Q ss_pred CCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHH
Q psy14015 140 GDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAG 219 (318)
Q Consensus 140 d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~ 219 (318)
++.+.+|..+.+.|.-..-...+..+..+ .++--...+..+++|++|.|...|.+
T Consensus 472 ~~~~n~r~~~~~~Lr~l~f~~de~~k~~~-------------------------~~ki~a~~i~~l~nd~d~~Vqeq~fq 526 (678)
T KOG1293|consen 472 DPDFNSRANSLWVLRHLMFNCDEEEKFQL-------------------------LAKIPANLILDLINDPDWAVQEQCFQ 526 (678)
T ss_pred CCCchHHHHHHHHHHHHHhcchHHHHHHH-------------------------HHHhhHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999888877644333222222221 11112344567778888888877776
Q ss_pred hhHHHH
Q psy14015 220 KLGELA 225 (318)
Q Consensus 220 ~L~~l~ 225 (318)
-|-.+.
T Consensus 527 llRNl~ 532 (678)
T KOG1293|consen 527 LLRNLT 532 (678)
T ss_pred HHHHhh
Confidence 666554
No 166
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=93.78 E-value=0.33 Score=38.55 Aligned_cols=123 Identities=12% Similarity=0.066 Sum_probs=78.0
Q ss_pred HHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHHHHHHHHHHHcccccCcCc------------------ccch
Q psy14015 27 VQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGG------------------PEYV 88 (318)
Q Consensus 27 ~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~VR~~aa~~L~~l~~~~~~------------------~~~~ 88 (318)
+.+|...+..+..++...-|+ .++++++.+.++++.+..-.....+.|..+.+.+.. ....
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~-~Wp~~l~~l~~~~~~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~ 80 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQ-QWPDFLEDLLQLLQSSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNS 80 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT-TSTTHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHChh-hCchHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHH
Confidence 467888888899988776555 467788888777766433333333333333221110 1123
Q ss_pred hccchHHhhhccCch----hHHHHHHHHHHHHHHhhCChhHHhh-hHHHHHHHhhcCCCchhhhhhhhh
Q psy14015 89 HCLLPPLESLATVEE----TVVRDKAVESLRLISAQHSPHDLEA-HFVPLVQRLASGDWFTSRTSACGL 152 (318)
Q Consensus 89 ~~llp~l~~l~~d~~----~~VR~~a~~~l~~l~~~~~~~~~~~-~ilp~~~~l~~d~~~~vR~~a~~~ 152 (318)
+.++.++.+.+.... ..+...+++++.....-.+.+.+.+ .+++.+.++++++.. |..|++.
T Consensus 81 ~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~--~~~A~~c 147 (148)
T PF08389_consen 81 PDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPEL--REAAAEC 147 (148)
T ss_dssp HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCC--HHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHH--HHHHHHh
Confidence 446666666554433 7888899999999998888777665 488999888877654 5566543
No 167
>KOG1993|consensus
Probab=93.77 E-value=1.2 Score=44.87 Aligned_cols=209 Identities=19% Similarity=0.197 Sum_probs=121.0
Q ss_pred HhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccCc-hhHHHHHHHHHHHHHHhhC--Chh
Q psy14015 49 TRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVE-ETVVRDKAVESLRLISAQH--SPH 124 (318)
Q Consensus 49 ~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~-~~~VR~~a~~~l~~l~~~~--~~~ 124 (318)
..+.++|-+. .-.+..- .|+-++--+++....--..+....++-.+-+++.|. |..||-+++.++..+..-. +++
T Consensus 485 l~~~llpEl~-~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~d 563 (978)
T KOG1993|consen 485 LQEALLPELA-NDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSED 563 (978)
T ss_pred HHHhhCHHhh-hcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChh
Confidence 4566777665 2222333 999999999988763333455566777788999998 6788999999998887653 232
Q ss_pred HHhh---hHHHHHHHhhcC-CCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHH
Q psy14015 125 DLEA---HFVPLVQRLASG-DWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRS 200 (318)
Q Consensus 125 ~~~~---~ilp~~~~l~~d-~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~ 200 (318)
.... .+.-.+.++++. .....|.....+++.++.+.++.+.... ..++.
T Consensus 564 sFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~---------------------------~~ivq 616 (978)
T KOG1993|consen 564 SFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYA---------------------------STIVQ 616 (978)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHH---------------------------HHHHH
Confidence 2111 122222333433 2355677777777776666554332111 23334
Q ss_pred HHHHhhc--CCCHHHHHHHHHhhHHHHHHhchh--hhHhhHHHHHHHhhcCC-cHHHHHHHHHHHHHHHhhCChhh----
Q psy14015 201 HFRNLCQ--DDTPMVRRAAAGKLGELAKVVEVD--YLKTDIIPMFVNLAQDE-QDSVRLLAVEACVSIASLLSQSD---- 271 (318)
Q Consensus 201 ~l~~l~~--D~~~~VR~~aa~~L~~l~~~~~~~--~~~~~llp~l~~ll~D~-~~~VR~aa~~~l~~l~~~l~~~~---- 271 (318)
.+-.+.. .+.+..|.+....|..+...+|.+ .....++|++. +..|| ++..-.-...++.-....++-..
T Consensus 617 ~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIe-l~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p 695 (978)
T KOG1993|consen 617 YLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIE-LSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTP 695 (978)
T ss_pred HHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHH-HhcCCCCCceeehhhhHHHHHHHHHhcccccCH
Confidence 4433432 267889999999999999999965 34455666654 55555 33333333333333332222111
Q ss_pred hhHhhHHHHHHhccc
Q psy14015 272 VEQLVMPTLRQCSVQ 286 (318)
Q Consensus 272 ~~~~l~p~l~~ll~D 286 (318)
..-.++|.+...+.-
T Consensus 696 ~ll~L~p~l~~~iE~ 710 (978)
T KOG1993|consen 696 ELLLLFPHLLYIIEQ 710 (978)
T ss_pred HHHHHHHHHHHHHHh
Confidence 112366666666554
No 168
>KOG1991|consensus
Probab=93.75 E-value=2 Score=44.34 Aligned_cols=159 Identities=15% Similarity=0.095 Sum_probs=101.7
Q ss_pred cCchhHHHH-------------HHHHHHHHHHhhCChhHHhhhHHHHHHHhhc----C----CCchhhhhhhhhhhhhcc
Q psy14015 100 TVEETVVRD-------------KAVESLRLISAQHSPHDLEAHFVPLVQRLAS----G----DWFTSRTSACGLFSVCYP 158 (318)
Q Consensus 100 ~d~~~~VR~-------------~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~----d----~~~~vR~~a~~~l~~~~~ 158 (318)
.|+.+-+|. +|...+..++.+-+++.... +++.+.+.++ + ++++-..+|..++|.++.
T Consensus 369 ~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k-~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~ 447 (1010)
T KOG1991|consen 369 EDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETLPK-ILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLAS 447 (1010)
T ss_pred cCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhhhh-HHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHH
Confidence 456666665 57777777777766654333 4444433333 2 234555677777776554
Q ss_pred ccCcc--hHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHH-HHhchhhhHh
Q psy14015 159 RVTAG--VKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELA-KVVEVDYLKT 235 (318)
Q Consensus 159 ~~~~~--~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~-~~~~~~~~~~ 235 (318)
.+... .+.. ....+.+.+.-.++++.-..|.-|+.-++.++ ..+..+....
T Consensus 448 ~L~K~s~~~~~--------------------------mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~ 501 (1010)
T KOG1991|consen 448 ILLKKSPYKSQ--------------------------MEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLS 501 (1010)
T ss_pred HHccCCchHHH--------------------------HHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHH
Confidence 33321 1111 12345667777888999999999999999999 4455555566
Q ss_pred hHHHHHHHhhc-CCcHHHHHHHHHHHHHHHhhCCh--hhhhHhhHHHHHHhcc
Q psy14015 236 DIIPMFVNLAQ-DEQDSVRLLAVEACVSIASLLSQ--SDVEQLVMPTLRQCSV 285 (318)
Q Consensus 236 ~llp~l~~ll~-D~~~~VR~aa~~~l~~l~~~l~~--~~~~~~l~p~l~~ll~ 285 (318)
.++....+.+. |.+--||--++-|+..+...... +....++-|.+..+|+
T Consensus 502 ~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~ 554 (1010)
T KOG1991|consen 502 EALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLK 554 (1010)
T ss_pred HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHH
Confidence 67776666555 99999999999999998866543 3345555555555543
No 169
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=93.45 E-value=0.76 Score=37.60 Aligned_cols=151 Identities=13% Similarity=0.113 Sum_probs=77.9
Q ss_pred ChHhHhhchhhhhhhhcCCh-HH-HHHHHHHHHcccccCcCcccchhccchHHhhhc-cCchhHHHHHHHHHHHHHHhh-
Q psy14015 45 GQERTRGELIPFLTETIYDE-DE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLA-TVEETVVRDKAVESLRLISAQ- 120 (318)
Q Consensus 45 g~~~~~~~llp~l~~l~~D~-~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~-~d~~~~VR~~a~~~l~~l~~~- 120 (318)
.|.....+|++.+.+++..+ ++ +|+++.+.||.++-. ++..-+.+..-...-. .+.++..... .+......
T Consensus 3 ~PY~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGAL--DP~~~k~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~ 77 (160)
T PF11865_consen 3 DPYLDYPELLDILLNILKTEQSQSIRREALRVLGILGAL--DPYKHKSIQKSLDSKSSENSNDESTDI---SLPMMGISP 77 (160)
T ss_pred chHHHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcccc--CcHHHhcccccCCccccccccccchhh---HHhhccCCC
Confidence 34445678889988888654 35 999999999977421 1111010111010000 1111111111 11111111
Q ss_pred CChhHHhhhHHHHHHHhhcCCCch-hhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHH
Q psy14015 121 HSPHDLEAHFVPLVQRLASGDWFT-SRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELR 199 (318)
Q Consensus 121 ~~~~~~~~~ilp~~~~l~~d~~~~-vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll 199 (318)
..++.+....+..+.+.++|++.. ....++..+-.++..++.. .- ..-..++
T Consensus 78 ~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~---------------cv------------~~L~~vi 130 (160)
T PF11865_consen 78 SSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLK---------------CV------------PYLPQVI 130 (160)
T ss_pred chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcC---------------ch------------hHHHHHh
Confidence 233444455666677777887532 2334444433333222211 10 1336788
Q ss_pred HHHHHhhcCCCHHHHHHHHHhhHHHHHH
Q psy14015 200 SHFRNLCQDDTPMVRRAAAGKLGELAKV 227 (318)
Q Consensus 200 ~~l~~l~~D~~~~VR~~aa~~L~~l~~~ 227 (318)
|.++..+.......|+...+.|+.+...
T Consensus 131 P~~l~~i~~~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 131 PIFLRVIRTCPDSLREFYFQQLADLVSI 158 (160)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 8888888877778888888888877654
No 170
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=93.44 E-value=0.8 Score=41.16 Aligned_cols=40 Identities=10% Similarity=0.174 Sum_probs=35.1
Q ss_pred cchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhH
Q psy14015 86 EYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHD 125 (318)
Q Consensus 86 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~ 125 (318)
..+..++|.+..++.|.+..+|..++..+..+.+..+...
T Consensus 115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~ 154 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAE 154 (282)
T ss_pred HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhh
Confidence 3456689999999999999999999999999999887655
No 171
>KOG0413|consensus
Probab=93.43 E-value=5.3 Score=41.44 Aligned_cols=182 Identities=18% Similarity=0.133 Sum_probs=99.8
Q ss_pred hhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh--------
Q psy14015 53 LIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP-------- 123 (318)
Q Consensus 53 llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~-------- 123 (318)
+..++..-|-|..+ ||..++..+.++.+..++.. ...|+-.+.+-..|+--.+++++...+..-...++.
T Consensus 473 ~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~~-~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~l 551 (1529)
T KOG0413|consen 473 LYNIVYMRCLDKAAAVRLHALNSLTKILQLQSHRE-AFSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDLL 551 (1529)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccc-hHHHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhhc
Confidence 34444444555555 77777777776666554432 233444444445555555555554444432222211
Q ss_pred -------------------hHHhhhHHHHHHHhhc-CCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCccc
Q psy14015 124 -------------------HDLEAHFVPLVQRLAS-GDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQ 183 (318)
Q Consensus 124 -------------------~~~~~~ilp~~~~l~~-d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~v 183 (318)
..+...++..+.+-.+ |+-..+|..|+.++.....+... .
T Consensus 552 ~~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~----------------~---- 611 (1529)
T KOG0413|consen 552 LDEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDE----------------A---- 611 (1529)
T ss_pred CcchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccch----------------h----
Confidence 1122233444433333 55455666666655432221111 0
Q ss_pred ccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh-hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHH
Q psy14015 184 QGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD-YLKTDIIPMFVNLAQDEQDSVRLLAVEACVS 262 (318)
Q Consensus 184 R~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~-~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~ 262 (318)
...+..+-++-.+|.|+...||+.++.+|+++...-..= .+...-+-.+...++|.+..|...+..-|++
T Consensus 612 ---------~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k 682 (1529)
T KOG0413|consen 612 ---------SKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMK 682 (1529)
T ss_pred ---------hcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 122445788889999999999999999999987521100 1112233456667788888888888886766
Q ss_pred HH
Q psy14015 263 IA 264 (318)
Q Consensus 263 l~ 264 (318)
+.
T Consensus 683 ~l 684 (1529)
T KOG0413|consen 683 VL 684 (1529)
T ss_pred HH
Confidence 55
No 172
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=93.30 E-value=1.1 Score=42.03 Aligned_cols=139 Identities=15% Similarity=0.153 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhh----cCC--CchhhhhhhhhhhhhccccCcc-hHHHHHHHHHhhc
Q psy14015 104 TVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLA----SGD--WFTSRTSACGLFSVCYPRVTAG-VKAELRSHFRNLC 176 (318)
Q Consensus 104 ~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~----~d~--~~~vR~~a~~~l~~~~~~~~~~-~~~~l~~~~~~l~ 176 (318)
+..|.+|.+-+..++++.++ .+...+..++.+++ +++ +|+.+-+|+.+++.+..+.... .+-.
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~-~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt--------- 294 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEK-QVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVT--------- 294 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S---------
T ss_pred CCcHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcc---------
Confidence 46677899999999887543 33333334444433 343 5888888888888765443211 0000
Q ss_pred cCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHH
Q psy14015 177 QDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLA 256 (318)
Q Consensus 177 ~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa 256 (318)
+..+ .....+....+++|-+. --.+..+-+|..|++.+..+-..+.++. ...++|.+.+.+++++..|+.=|
T Consensus 295 -~~~~-----~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~-l~~~~~~l~~~L~~~~~vv~tyA 366 (370)
T PF08506_consen 295 -QTNE-----LVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQ-LLQIFPLLVNHLQSSSYVVHTYA 366 (370)
T ss_dssp --B-T-----TS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHH-HHHHHHHHHHHTTSS-HHHHHHH
T ss_pred -cccc-----cccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHH-HHHHHHHHHHHhCCCCcchhhhh
Confidence 0000 00001123455556555 2335668899999999999988887654 46799999999999999999888
Q ss_pred HHHH
Q psy14015 257 VEAC 260 (318)
Q Consensus 257 ~~~l 260 (318)
+.++
T Consensus 367 A~~i 370 (370)
T PF08506_consen 367 AIAI 370 (370)
T ss_dssp HHHH
T ss_pred hhhC
Confidence 7664
No 173
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=93.05 E-value=0.48 Score=38.63 Aligned_cols=141 Identities=18% Similarity=0.207 Sum_probs=85.5
Q ss_pred HHhhhcc-CchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHH
Q psy14015 94 PLESLAT-VEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHF 172 (318)
Q Consensus 94 ~l~~l~~-d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~ 172 (318)
++..+.. ...+++|..+.-++..+.+ ..++...+.+..++..+..+........+...+..+++...+ +...+
T Consensus 8 lL~~L~~~~~~~~~r~~a~v~l~k~l~-~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~d-v~~~l---- 81 (157)
T PF11701_consen 8 LLTSLDMLRQPEEVRSHALVILSKLLD-AAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPD-VGSEL---- 81 (157)
T ss_dssp HHHHHHCTTTSCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHH-HHHHH----
T ss_pred HHHHhcccCCCHhHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHH-HHHHH----
Confidence 3444443 5568899998888888852 233445566777777777665455556666666666554432 22222
Q ss_pred HhhccCCCcccccchhhcCccchHHHHHHHHHhhc--CCCHHHHHHHHHhhHHHHHHh-chhhhHhhHHHHHHHhhc-CC
Q psy14015 173 RNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ--DDTPMVRRAAAGKLGELAKVV-EVDYLKTDIIPMFVNLAQ-DE 248 (318)
Q Consensus 173 ~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~--D~~~~VR~~aa~~L~~l~~~~-~~~~~~~~llp~l~~ll~-D~ 248 (318)
...+.+++.+..++. .++..+-.++++.|..=+..- ..+.+....++.++.+.+ ++
T Consensus 82 --------------------~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~ 141 (157)
T PF11701_consen 82 --------------------FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSK 141 (157)
T ss_dssp --------------------CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC
T ss_pred --------------------HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccc
Confidence 234566777777777 667778888887776554211 123455678899999995 55
Q ss_pred cHH-HHHHHHHHH
Q psy14015 249 QDS-VRLLAVEAC 260 (318)
Q Consensus 249 ~~~-VR~aa~~~l 260 (318)
+.. +|..++-++
T Consensus 142 ~~~~ir~~A~v~L 154 (157)
T PF11701_consen 142 DDSEIRVLAAVGL 154 (157)
T ss_dssp -HH-CHHHHHHHH
T ss_pred chHHHHHHHHHHH
Confidence 455 666665444
No 174
>KOG4413|consensus
Probab=92.93 E-value=4.2 Score=37.11 Aligned_cols=182 Identities=18% Similarity=0.185 Sum_probs=110.9
Q ss_pred hHHHHH---HHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCC
Q psy14015 104 TVVRDK---AVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180 (318)
Q Consensus 104 ~~VR~~---a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~ 180 (318)
++-|++ ++.++-.+.+...+..+...+.|-+..-+.-++-.|+.-+++.++.+..........++..
T Consensus 54 enhrekttlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseill---------- 123 (524)
T KOG4413|consen 54 ENHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILL---------- 123 (524)
T ss_pred ccccchhhhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHH----------
Confidence 445565 7777777777665555566677777766666667888888888887765544322222200
Q ss_pred cccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch-hhh-HhhHHH--HHHHhhcCCcHHHHHHH
Q psy14015 181 PMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV-DYL-KTDIIP--MFVNLAQDEQDSVRLLA 256 (318)
Q Consensus 181 ~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~-~~~-~~~llp--~l~~ll~D~~~~VR~aa 256 (318)
.....+++.++...-.++.+|-++|.+.+..++.+-.. +.+ ..+++. .+.++..-.+..+|-..
T Consensus 124 ------------vvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRV 191 (524)
T KOG4413|consen 124 ------------VVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRV 191 (524)
T ss_pred ------------HhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHH
Confidence 23567888888888899999999999999999874211 000 001110 23344444455667777
Q ss_pred HHHHHHHHhhCChh--hh-hHhhHHHHHHhccccccccccCCCCCCchhhHHhhhh-hhhhhhc
Q psy14015 257 VEACVSIASLLSQS--DV-EQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISAT-TLRLMRH 316 (318)
Q Consensus 257 ~~~l~~l~~~l~~~--~~-~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~-~~~~~~~ 316 (318)
.+-|..+..+-... .+ ++-++..+..=++- .++.-|+.+.|+.- .|-|..|
T Consensus 192 leLIieifSiSpesaneckkSGLldlLeaElkG---------teDtLVianciElvteLaeteH 246 (524)
T KOG4413|consen 192 LELIIEIFSISPESANECKKSGLLDLLEAELKG---------TEDTLVIANCIELVTELAETEH 246 (524)
T ss_pred HHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcC---------CcceeehhhHHHHHHHHHHHhh
Confidence 77666666433221 12 23366666655553 37788888888753 3444444
No 175
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=92.75 E-value=0.12 Score=29.33 Aligned_cols=30 Identities=37% Similarity=0.677 Sum_probs=21.9
Q ss_pred HHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCC
Q psy14015 211 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDE 248 (318)
Q Consensus 211 ~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~ 248 (318)
|.||..++.+||.++. +..+|.+..+++|+
T Consensus 1 ~~vR~~aa~aLg~~~~--------~~a~~~L~~~l~d~ 30 (30)
T smart00567 1 PLVRHEAAFALGQLGD--------EEAVPALIKALEDE 30 (30)
T ss_pred CHHHHHHHHHHHHcCC--------HhHHHHHHHHhcCC
Confidence 5689999999998743 34667777777764
No 176
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=92.70 E-value=0.26 Score=30.07 Aligned_cols=30 Identities=33% Similarity=0.310 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhhHHHH
Q psy14015 196 AELRSHFRNLCQDDTPMVRRAAAGKLGELA 225 (318)
Q Consensus 196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~ 225 (318)
...+|.+.+++.+++..||+.|+.+|+.++
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 457899999999999999999999999876
No 177
>KOG4535|consensus
Probab=92.63 E-value=0.3 Score=46.36 Aligned_cols=187 Identities=16% Similarity=0.116 Sum_probs=106.0
Q ss_pred HHHHHhc-CccHHHHHHHHHhHHHHHHhhCh---HhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCc--Cccc---
Q psy14015 17 VLIDELK-NEDVQLRLNSIKKLSTIALALGQ---ERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNV--GGPE--- 86 (318)
Q Consensus 17 ~l~~~l~-~~~~~~R~~~~~~L~~ia~~lg~---~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~--~~~~--- 86 (318)
.++...+ +++-.+|.++++.+.-.-.+-|. -.+....-..+...+.|..- +|..++..++.+...+ |-+.
T Consensus 394 ~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s 473 (728)
T KOG4535|consen 394 TFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDS 473 (728)
T ss_pred HHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchH
Confidence 3444443 44455677777766543211111 11333444455566677665 8888888888775432 2111
Q ss_pred chhccch-----HH--hhhccCchhHHHHHHHHHHHHHHhhCCh-------hHHhhhHHHHHHHhhcCCCchhhhhhhhh
Q psy14015 87 YVHCLLP-----PL--ESLATVEETVVRDKAVESLRLISAQHSP-------HDLEAHFVPLVQRLASGDWFTSRTSACGL 152 (318)
Q Consensus 87 ~~~~llp-----~l--~~l~~d~~~~VR~~a~~~l~~l~~~~~~-------~~~~~~ilp~~~~l~~d~~~~vR~~a~~~ 152 (318)
..+.+.. .+ ...+.-+.+.||..|+++|..+.+.+.+ +.....+...+-.-.......||++||..
T Consensus 474 ~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya 553 (728)
T KOG4535|consen 474 FQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYA 553 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHH
Confidence 1122221 12 1223344689999999999999887753 11111222222111222357799999999
Q ss_pred hhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcC-CCHHHHHHHHHhhHHHHHHh
Q psy14015 153 FSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQD-DTPMVRRAAAGKLGELAKVV 228 (318)
Q Consensus 153 l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D-~~~~VR~~aa~~L~~l~~~~ 228 (318)
+|.++..-.-. +. +. .+-..+++.+..+..| .|..||-.||.+|...+.-.
T Consensus 554 ~gNLfkn~a~~-----------lq-~~-------------~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re 605 (728)
T KOG4535|consen 554 MGNLFKNPALP-----------LQ-TA-------------PWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKRE 605 (728)
T ss_pred HHHhhcCcccc-----------cc-CC-------------CchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCcc
Confidence 98775442210 00 00 2456788999988876 67999999999998777543
No 178
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=92.56 E-value=1.2 Score=37.17 Aligned_cols=88 Identities=10% Similarity=0.071 Sum_probs=68.0
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh---hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHH---HhhCC
Q psy14015 195 KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY---LKTDIIPMFVNLAQDEQDSVRLLAVEACVSI---ASLLS 268 (318)
Q Consensus 195 ~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~---~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l---~~~l~ 268 (318)
...++|.|.+-+.....--|..|.+.+.++...-|.+. +...+++-+++.++..+..|..+++.++..+ ++.+|
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 46789999999998888899999999999988744443 3456777888899999999999999999999 67776
Q ss_pred hh--hhhHhhHHHHHH
Q psy14015 269 QS--DVEQLVMPTLRQ 282 (318)
Q Consensus 269 ~~--~~~~~l~p~l~~ 282 (318)
+. -+...++|.+--
T Consensus 116 ~aLvPyyrqLLp~ln~ 131 (183)
T PF10274_consen 116 EALVPYYRQLLPVLNL 131 (183)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 54 223445555443
No 179
>KOG0168|consensus
Probab=92.43 E-value=2.8 Score=42.75 Aligned_cols=192 Identities=11% Similarity=0.048 Sum_probs=118.7
Q ss_pred HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHH----hhhHHHHHHHhhcCC-
Q psy14015 67 VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDL----EAHFVPLVQRLASGD- 141 (318)
Q Consensus 67 VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~----~~~ilp~~~~l~~d~- 141 (318)
+++...+.+.-+-...|.. ....+-.+|+.+-...++.....|+.-++++....+++.+ .+.++|.+..+++++
T Consensus 146 ~g~lgprv~~ll~rt~~~s-asSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~ 224 (1051)
T KOG0168|consen 146 FGRLGPRVLQLLHRTIGSS-ASSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEH 224 (1051)
T ss_pred ccccchhHHHHhhhccccc-chHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccc
Confidence 4444444444443333332 2234556677775555666666666666666655555432 345899999999886
Q ss_pred CchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHh-hcCCCHHHHHHHHHh
Q psy14015 142 WFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNL-CQDDTPMVRRAAAGK 220 (318)
Q Consensus 142 ~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l-~~D~~~~VR~~aa~~ 220 (318)
++.+-..||..+..++.-++... +-.+..+.+|+|... ..=+--.|-+.+.++
T Consensus 225 n~DIMl~AcRaltyl~evlP~S~--------------------------a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqA 278 (1051)
T KOG0168|consen 225 NFDIMLLACRALTYLCEVLPRSS--------------------------AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQA 278 (1051)
T ss_pred cHHHHHHHHHHHHHHHhhccchh--------------------------heeecccchHHHHHhhhhhhhhHHHHHHHHH
Confidence 57777788777765544433210 002345568888644 445667888888888
Q ss_pred hHHHHHHhchhhh----HhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhh--hHhhHHHHHHhcccccc
Q psy14015 221 LGELAKVVEVDYL----KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV--EQLVMPTLRQCSVQIVD 289 (318)
Q Consensus 221 L~~l~~~~~~~~~----~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~--~~~l~p~l~~ll~D~~~ 289 (318)
|-.|.+.-+.... ...++.+|..+ +-.+++.|.....++|+.+.++.+ .-..+|.|.++|....+
T Consensus 279 LE~iSR~H~~AiL~AG~l~a~LsylDFF----Si~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~ 349 (1051)
T KOG0168|consen 279 LEKISRRHPKAILQAGALSAVLSYLDFF----SIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDK 349 (1051)
T ss_pred HHHHHhhccHHHHhcccHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccc
Confidence 8888875544322 22344444444 335677777788889998877753 34589999999998554
No 180
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=92.28 E-value=0.23 Score=30.76 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=19.9
Q ss_pred hhHHHHHHHhhcCCcHHHHHHHHHH
Q psy14015 235 TDIIPMFVNLAQDEQDSVRLLAVEA 259 (318)
Q Consensus 235 ~~llp~l~~ll~D~~~~VR~aa~~~ 259 (318)
..+...+..-+.|+++.||.++++.
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 4677888888888888888888754
No 181
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=91.85 E-value=2.3 Score=34.81 Aligned_cols=72 Identities=14% Similarity=0.247 Sum_probs=56.2
Q ss_pred HHHHHHHHHhhcCCC-HHHHHHHHHhhHHHHHHhchhh--hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhC
Q psy14015 196 AELRSHFRNLCQDDT-PMVRRAAAGKLGELAKVVEVDY--LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLL 267 (318)
Q Consensus 196 ~~ll~~l~~l~~D~~-~~VR~~aa~~L~~l~~~~~~~~--~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l 267 (318)
.-.+..+.+.++|+. ..-..++++++..+.+.+|... ....++|.|.+.++......|......++.+..++
T Consensus 85 ~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~iv 159 (160)
T PF11865_consen 85 TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSIV 159 (160)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 446677888888887 5566678888888888777653 46789999999999888899999888887776543
No 182
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=91.67 E-value=3.5 Score=34.58 Aligned_cols=70 Identities=16% Similarity=0.124 Sum_probs=42.1
Q ss_pred hhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhc
Q psy14015 128 AHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ 207 (318)
Q Consensus 128 ~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~ 207 (318)
+.+++.+.+++-+++..+|..|...+..+... +-..| .+-+|.++.+..
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~q-----------------GLvnP--------------~~cvp~lIAL~t 55 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQ-----------------GLVNP--------------KQCVPTLIALET 55 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-----------------CCCCh--------------HHHHhHhhhhhC
Confidence 34666666666666667777776665533210 00011 345677777777
Q ss_pred CCCHHHHHHHHHhhHHHHHHh
Q psy14015 208 DDTPMVRRAAAGKLGELAKVV 228 (318)
Q Consensus 208 D~~~~VR~~aa~~L~~l~~~~ 228 (318)
|+++.+|..|...+..+.+..
T Consensus 56 s~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 56 SPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred CCChHHHHHHHHHHHHHHHHh
Confidence 777777777777777766543
No 183
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=91.43 E-value=11 Score=36.31 Aligned_cols=245 Identities=14% Similarity=0.141 Sum_probs=117.4
Q ss_pred HHHHHHHHHhHHHHHHhhChHhHhhchh-hhhhhhcCChHH-HHHHHHHHHcccccCcCcccc---hhccchHHhhhccC
Q psy14015 27 VQLRLNSIKKLSTIALALGQERTRGELI-PFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEY---VHCLLPPLESLATV 101 (318)
Q Consensus 27 ~~~R~~~~~~L~~ia~~lg~~~~~~~ll-p~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~---~~~llp~l~~l~~d 101 (318)
...|..+++.|+.++..+... ....+. |.|...++.... =|..++-.+.+++........ .+.+.+.|...+.+
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~-~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~ 179 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPES-SLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILEN 179 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcC
Confidence 457999999999999887554 333333 356677777776 777788888888765432211 13455555555553
Q ss_pred chh-----------HHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcc-hHHHHH
Q psy14015 102 EET-----------VVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG-VKAELR 169 (318)
Q Consensus 102 ~~~-----------~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~-~~~~l~ 169 (318)
+.. .+|..+..-+..+.+.-- +...-+|.+........ . .-.+ .++-+ ..+-..
T Consensus 180 ~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~---~~~~klp~l~~~v~~~~-~---~~p~-------~fsi~~A~~v~~ 245 (441)
T PF12054_consen 180 PEPPYYDELVPSLKRLRTECQQLLATFRDVGK---VPPSKLPSLPVVVQGEP-E---AGPE-------AFSIEQAEKVVG 245 (441)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC---CChhhcccccccccccc-c---cCCc-------cCCHHHHHHHHH
Confidence 332 122222222222211100 00001111110001000 0 0000 00000 011111
Q ss_pred HHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcC---CCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhc
Q psy14015 170 SHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQD---DTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQ 246 (318)
Q Consensus 170 ~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D---~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~ 246 (318)
..|..+....++.-|......-++.+..+....-.+-.. -+-.|..++|.++-.+... +++...-|-|.....=+
T Consensus 246 ~~~~~l~~~l~~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~l--P~KLnPiIrpLMdSIK~ 323 (441)
T PF12054_consen 246 EDFEKLKKSLSPSQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGL--PKKLNPIIRPLMDSIKR 323 (441)
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCCccHHHHHHHHHhhc
Confidence 233444444433211100000011223333333222222 2334555555555555432 34444556677777778
Q ss_pred CCcHHHHHHHHHHHHHHHhhCCh--hhhhHhhHHHHHHhccccc
Q psy14015 247 DEQDSVRLLAVEACVSIASLLSQ--SDVEQLVMPTLRQCSVQIV 288 (318)
Q Consensus 247 D~~~~VR~aa~~~l~~l~~~l~~--~~~~~~l~p~l~~ll~D~~ 288 (318)
.++...+..++.++..+.+.+.. ..-.+.|+..|+.+|+.+.
T Consensus 324 Een~~LQ~rsA~slA~Li~~~~~rkp~PndKIvkNLc~flC~D~ 367 (441)
T PF12054_consen 324 EENELLQQRSAESLARLIQLCVDRKPCPNDKIVKNLCTFLCVDT 367 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhhhhccCc
Confidence 88999999999999999987742 2334678888888886533
No 184
>KOG2011|consensus
Probab=91.41 E-value=5.3 Score=41.93 Aligned_cols=81 Identities=15% Similarity=0.149 Sum_probs=61.1
Q ss_pred HhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhh---CCh-hhhhHhhHHH
Q psy14015 204 NLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASL---LSQ-SDVEQLVMPT 279 (318)
Q Consensus 204 ~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~---l~~-~~~~~~l~p~ 279 (318)
.--.|-.+.+|..|+..||..+.....-.+....+-++-=.+.|-+..||..++.+|..+.+. .++ +.+.+..-.-
T Consensus 294 HRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~R 373 (1048)
T KOG2011|consen 294 HRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDR 373 (1048)
T ss_pred eecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 334789999999999999999998876666666788888889999999999999999998865 222 2233333344
Q ss_pred HHHhc
Q psy14015 280 LRQCS 284 (318)
Q Consensus 280 l~~ll 284 (318)
++.+.
T Consensus 374 IVeMa 378 (1048)
T KOG2011|consen 374 IVEMA 378 (1048)
T ss_pred HHHHH
Confidence 55555
No 185
>KOG2274|consensus
Probab=91.25 E-value=3.2 Score=42.55 Aligned_cols=73 Identities=22% Similarity=0.290 Sum_probs=58.9
Q ss_pred chHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhC
Q psy14015 194 VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLL 267 (318)
Q Consensus 194 ~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l 267 (318)
.+..+...+.+++-|++..+|.+++++...++...=++. +.+++|.+.+++.+.+..-=..+..++..+..-+
T Consensus 87 ~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~-WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev 159 (1005)
T KOG2274|consen 87 VKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDE-WPELVPFILKLLSSGNENSIHGAMRVLAELSDEV 159 (1005)
T ss_pred HHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchh-hHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHH
Confidence 456677788888889999999999999999998765543 5889999999999887776677778888777544
No 186
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=91.15 E-value=7.1 Score=35.04 Aligned_cols=153 Identities=19% Similarity=0.149 Sum_probs=91.5
Q ss_pred HHHHHHh-hCChhHHh---hhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchh
Q psy14015 113 SLRLISA-QHSPHDLE---AHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVW 188 (318)
Q Consensus 113 ~l~~l~~-~~~~~~~~---~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~ 188 (318)
++.-+.. ..+...+. ..++|.+..++.|.+..+|.-++.++..++..+.......+ . + .+
T Consensus 99 ~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L----~---~-tG-------- 162 (282)
T PF10521_consen 99 VLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDIL----R---R-TG-------- 162 (282)
T ss_pred HHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHH----H---H-cC--------
Confidence 3444444 55443333 45899999999999999999999999888776654320000 0 0 00
Q ss_pred hcCccchHHHHHHHHHhhc--------CCCHHHHHHHHHhhHHHHHHhch---h--------hhHhhHHHHHHHhhcCCc
Q psy14015 189 ECGSGVKAELRSHFRNLCQ--------DDTPMVRRAAAGKLGELAKVVEV---D--------YLKTDIIPMFVNLAQDEQ 249 (318)
Q Consensus 189 ~~~~~~~~~ll~~l~~l~~--------D~~~~VR~~aa~~L~~l~~~~~~---~--------~~~~~llp~l~~ll~D~~ 249 (318)
..+-+.+.+...+. |+...+=..+..++-.++..... + .+.+.++..+....+-+.
T Consensus 163 -----l~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~ 237 (282)
T PF10521_consen 163 -----LFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSY 237 (282)
T ss_pred -----hHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCc
Confidence 01111222222222 45555555666666666543210 0 111223333333334445
Q ss_pred HHHHHHHHHHHHHHHhhCChhhh--hHhhHHHHHHhccc
Q psy14015 250 DSVRLLAVEACVSIASLLSQSDV--EQLVMPTLRQCSVQ 286 (318)
Q Consensus 250 ~~VR~aa~~~l~~l~~~l~~~~~--~~~l~p~l~~ll~D 286 (318)
..+|...+..+..+...+|...+ .+.++|.+.+.+.|
T Consensus 238 ~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~n 276 (282)
T PF10521_consen 238 PRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILEN 276 (282)
T ss_pred hhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcC
Confidence 88999999999999999988754 46799999999988
No 187
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=91.06 E-value=0.61 Score=28.41 Aligned_cols=30 Identities=27% Similarity=0.195 Sum_probs=27.7
Q ss_pred hhHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy14015 235 TDIIPMFVNLAQDEQDSVRLLAVEACVSIA 264 (318)
Q Consensus 235 ~~llp~l~~ll~D~~~~VR~aa~~~l~~l~ 264 (318)
.-.+|.+.+++++++..||..++.++.+++
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 458999999999999999999999999886
No 188
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.52 E-value=13 Score=33.73 Aligned_cols=66 Identities=15% Similarity=0.060 Sum_probs=36.9
Q ss_pred cchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHh--hhHHHHHHHhhcC----CCchhhhhhhhhhhhhc
Q psy14015 91 LLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLE--AHFVPLVQRLASG----DWFTSRTSACGLFSVCY 157 (318)
Q Consensus 91 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~--~~ilp~~~~l~~d----~~~~vR~~a~~~l~~~~ 157 (318)
.-|++. ++..+|..+...|...+..+....+..... ..+++.+.+.+++ +.......++..++.++
T Consensus 107 ~~~fl~-ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL 178 (312)
T PF03224_consen 107 YSPFLK-LLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL 178 (312)
T ss_dssp HHHHHH-H-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH
T ss_pred HHHHHH-HhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh
Confidence 344454 777779999999999999999887653322 2344444443332 33334466666666554
No 189
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=90.47 E-value=6.2 Score=31.53 Aligned_cols=84 Identities=14% Similarity=0.084 Sum_probs=65.1
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh----hhHhhHHHHHHHhhc-CCcHHHHHHHHHHHHHHHhhCChh
Q psy14015 196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD----YLKTDIIPMFVNLAQ-DEQDSVRLLAVEACVSIASLLSQS 270 (318)
Q Consensus 196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~----~~~~~llp~l~~ll~-D~~~~VR~aa~~~l~~l~~~l~~~ 270 (318)
++.+..+.+-++..+++|-..|..-|-.+..++|.. .....++..+.++++ .+...||..++..+...+..|+.+
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 677888888889999999999999999999888753 334457777777776 578899999999999999988765
Q ss_pred hhhHhhHHH
Q psy14015 271 DVEQLVMPT 279 (318)
Q Consensus 271 ~~~~~l~p~ 279 (318)
.....+...
T Consensus 120 ~~l~~i~~~ 128 (142)
T cd03569 120 PQLKYVVDT 128 (142)
T ss_pred cccHHHHHH
Confidence 433333333
No 190
>KOG2160|consensus
Probab=90.44 E-value=5.2 Score=36.68 Aligned_cols=138 Identities=14% Similarity=0.092 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHHHHHHhhCChh-HHhh-hHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCC
Q psy14015 103 ETVVRDKAVESLRLISAQHSPH-DLEA-HFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180 (318)
Q Consensus 103 ~~~VR~~a~~~l~~l~~~~~~~-~~~~-~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~ 180 (318)
+..=|+.|+.-|.++++...-. ++.. -.++.+..++++....+|..|+..+|.+...-+.. +..+
T Consensus 96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~-Qe~v------------ 162 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKS-QEQV------------ 162 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHH-HHHH------------
Confidence 3556788899999988877542 2222 23334444889999999999999999876543321 1111
Q ss_pred cccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch--hhh-HhhHHHHHHHhhcC--CcHHHHHH
Q psy14015 181 PMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV--DYL-KTDIIPMFVNLAQD--EQDSVRLL 255 (318)
Q Consensus 181 ~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~--~~~-~~~llp~l~~ll~D--~~~~VR~a 255 (318)
.+. ..+-..+..+..|..-.+|..|..+++.+.....+ ..+ .-.=+..+...+++ .+...++.
T Consensus 163 -------~E~-----~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK 230 (342)
T KOG2160|consen 163 -------IEL-----GALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRK 230 (342)
T ss_pred -------HHc-----ccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHH
Confidence 110 11223333444678889999999999999976532 211 11123455566666 45556666
Q ss_pred HHHHHHHHHh
Q psy14015 256 AVEACVSIAS 265 (318)
Q Consensus 256 a~~~l~~l~~ 265 (318)
++.-++.+.+
T Consensus 231 ~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 231 ALFLLSLLLQ 240 (342)
T ss_pred HHHHHHHHHH
Confidence 6666776664
No 191
>KOG2160|consensus
Probab=90.30 E-value=3.5 Score=37.78 Aligned_cols=99 Identities=15% Similarity=0.117 Sum_probs=66.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHhhHHHHHHhc--hhhhHh--hHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhh-
Q psy14015 199 RSHFRNLCQDDTPMVRRAAAGKLGELAKVVE--VDYLKT--DIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE- 273 (318)
Q Consensus 199 l~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~--~~~~~~--~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~- 273 (318)
++.++.++++.+..+|..|+.-+|.++++=. ++.+.+ .+-..+..+.+|....+|..+..++..+...+.+-...
T Consensus 126 l~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~f 205 (342)
T KOG2160|consen 126 LVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEF 205 (342)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHH
Confidence 4555559999999999999999999997532 222222 23345566668888999999999999988766443211
Q ss_pred -H-hhHHHHHHhccccccccccCCCCCCchhhHHhh
Q psy14015 274 -Q-LVMPTLRQCSVQIVDHKFCPNNEFHPLELHVIS 307 (318)
Q Consensus 274 -~-~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~ 307 (318)
. +=...|..++.+ ...+||+..-.
T Consensus 206 l~~~G~~~L~~vl~~----------~~~~~~lkrK~ 231 (342)
T KOG2160|consen 206 LKLNGYQVLRDVLQS----------NNTSVKLKRKA 231 (342)
T ss_pred HhcCCHHHHHHHHHc----------CCcchHHHHHH
Confidence 1 123456677777 55666665543
No 192
>KOG1992|consensus
Probab=90.28 E-value=12 Score=38.11 Aligned_cols=143 Identities=16% Similarity=0.149 Sum_probs=84.1
Q ss_pred hHHHHHHHhcCccHHH-HHHHHHhHHHHHHhhChHh---HhhchhhhhhhhcCChH--HHHHHHHHHH-cccccC-----
Q psy14015 14 PIAVLIDELKNEDVQL-RLNSIKKLSTIALALGQER---TRGELIPFLTETIYDED--EVLLALAEQL-GTFTPN----- 81 (318)
Q Consensus 14 ~i~~l~~~l~~~~~~~-R~~~~~~L~~ia~~lg~~~---~~~~llp~l~~l~~D~~--~VR~~aa~~L-~~l~~~----- 81 (318)
|+.-....++..|... |+.++.-+..+++.+...- +..++-..+.+...+++ |..+-.+-.| ..++..
T Consensus 362 pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~ 441 (960)
T KOG1992|consen 362 PLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAK 441 (960)
T ss_pred HHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhh
Confidence 6777778888888876 5577777788877653211 22344444555555533 3222222221 112210
Q ss_pred ---------cCc-ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhh
Q psy14015 82 ---------VGG-PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACG 151 (318)
Q Consensus 82 ---------~~~-~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~ 151 (318)
++- ..+...++|-|.+--..+.+.+|..+++-+..+=++++++.... ++|.+.+.++.++..+-..||.
T Consensus 442 ~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~-~~p~li~~L~a~s~vvhsYAA~ 520 (960)
T KOG1992|consen 442 HGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMA-LLPRLIRFLEAESRVVHSYAAI 520 (960)
T ss_pred cceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHHH-HHHHHHHhccCcchHHHHHHHH
Confidence 111 23345566665554345567788888887777778888877666 7888888888777666666666
Q ss_pred hhhhhc
Q psy14015 152 LFSVCY 157 (318)
Q Consensus 152 ~l~~~~ 157 (318)
.+.++.
T Consensus 521 aiEkil 526 (960)
T KOG1992|consen 521 AIEKLL 526 (960)
T ss_pred HHHhcc
Confidence 555543
No 193
>KOG2274|consensus
Probab=90.18 E-value=25 Score=36.38 Aligned_cols=133 Identities=16% Similarity=0.161 Sum_probs=76.5
Q ss_pred CCCCCchHHHHHHHh-c-CccHHHHHHHHHhHHHHHHh--hChHhHhhchhhhhh-hhcCChHH-HHHHHHHHHcccccC
Q psy14015 8 PDDSLYPIAVLIDEL-K-NEDVQLRLNSIKKLSTIALA--LGQERTRGELIPFLT-ETIYDEDE-VLLALAEQLGTFTPN 81 (318)
Q Consensus 8 ~~~~l~~i~~l~~~l-~-~~~~~~R~~~~~~L~~ia~~--lg~~~~~~~llp~l~-~l~~D~~~-VR~~aa~~L~~l~~~ 81 (318)
-++.+.++..+++.. . ++-|..-..+...++.-+.. ..+. .....+.... .+..|..+ +|..+++.+..+++.
T Consensus 443 ~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~-~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~ 521 (1005)
T KOG2274|consen 443 NDDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQ-LLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKV 521 (1005)
T ss_pred hHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchh-HHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCc
Confidence 456677766555443 3 44455433444444433322 2233 2233333333 34455555 999999998877631
Q ss_pred cCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhH--HhhhHHH----HHHHhhcCC
Q psy14015 82 VGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHD--LEAHFVP----LVQRLASGD 141 (318)
Q Consensus 82 ~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~ilp----~~~~l~~d~ 141 (318)
---....+.++..+.++..+.+++|-..-+++|...+..=++.. ....+.| ++.++.+|+
T Consensus 522 ~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP 587 (1005)
T KOG2274|consen 522 KVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDP 587 (1005)
T ss_pred eeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCc
Confidence 11122335566778888888899999999999998887654421 2233445 445556666
No 194
>KOG1848|consensus
Probab=89.76 E-value=8.1 Score=41.61 Aligned_cols=107 Identities=20% Similarity=0.185 Sum_probs=75.2
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhc----hh----hhHhhHHHHHHHhhc--CCc-------HHHHHHHH
Q psy14015 195 KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE----VD----YLKTDIIPMFVNLAQ--DEQ-------DSVRLLAV 257 (318)
Q Consensus 195 ~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~----~~----~~~~~llp~l~~ll~--D~~-------~~VR~aa~ 257 (318)
+=.++-.+.+++.|+.++||..|++.|-.+...-| +. .++..++|.+..--. -.+ ..--..++
T Consensus 995 wi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ 1074 (1610)
T KOG1848|consen 995 WIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSC 1074 (1610)
T ss_pred HHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhh
Confidence 44577788899999999999999999999987654 22 235556666651110 011 12235677
Q ss_pred HHHHHHHhhCChh-----------hhhHhhHHHHHHhccccccccccCCCCCCchhhHHhhhhhh
Q psy14015 258 EACVSIASLLSQS-----------DVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISATTL 311 (318)
Q Consensus 258 ~~l~~l~~~l~~~-----------~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~~~ 311 (318)
-.|+.+++.|+.. +.-+.++..+..+..| ..+++.+.+|++-.=
T Consensus 1075 ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~----------~s~e~slsai~~~qe 1129 (1610)
T KOG1848|consen 1075 LTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSD----------ISPEISLSAIKALQE 1129 (1610)
T ss_pred hhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhc----------CChHhHHHHHHHHHH
Confidence 7888888877553 1235688899999999 999999999987543
No 195
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=89.74 E-value=2.1 Score=39.69 Aligned_cols=133 Identities=19% Similarity=0.198 Sum_probs=74.3
Q ss_pred HHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH--HH--HHHHHHHcccccC------cCccc
Q psy14015 17 VLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE--VL--LALAEQLGTFTPN------VGGPE 86 (318)
Q Consensus 17 ~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~--VR--~~aa~~L~~l~~~------~~~~~ 86 (318)
.+.+.+-+++...|..+...|.. +.-...|+|++..++.+.-- +. -.....+..++.. +.-+.
T Consensus 182 ~It~a~~~~~~~~r~~aL~sL~t-------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~ 254 (343)
T cd08050 182 EITEALVGSNEEKRREALQSLRT-------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEP 254 (343)
T ss_pred HHHHHHhCCCHHHHHHHHHHhcc-------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHH
Confidence 33455556666667776666554 22346788998887755321 22 2222333333221 11122
Q ss_pred chhccchHHhhhc----------cCchhHHHHHHHHHHHHHHhhCChh--HHhhhHHHHHHHhhcCC--Cchhhhhhhhh
Q psy14015 87 YVHCLLPPLESLA----------TVEETVVRDKAVESLRLISAQHSPH--DLEAHFVPLVQRLASGD--WFTSRTSACGL 152 (318)
Q Consensus 87 ~~~~llp~l~~l~----------~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~ilp~~~~l~~d~--~~~vR~~a~~~ 152 (318)
+...++|.+..++ .++.+..|..|+..+..++..++.. .+...+.-.+.+.+.|+ .....++|+..
T Consensus 255 Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~G 334 (343)
T cd08050 255 YLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVG 334 (343)
T ss_pred hHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHH
Confidence 3444666655443 3456899999999999999988764 23333444444444544 34457777665
Q ss_pred hhhh
Q psy14015 153 FSVC 156 (318)
Q Consensus 153 l~~~ 156 (318)
|..+
T Consensus 335 L~~l 338 (343)
T cd08050 335 LSAL 338 (343)
T ss_pred HHHh
Confidence 5543
No 196
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=89.73 E-value=0.2 Score=27.72 Aligned_cols=27 Identities=41% Similarity=0.674 Sum_probs=16.9
Q ss_pred HHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcC
Q psy14015 213 VRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQD 247 (318)
Q Consensus 213 VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D 247 (318)
||..++.+||.++. +..+|.+.+.++|
T Consensus 1 VR~~Aa~aLg~igd--------~~ai~~L~~~L~d 27 (27)
T PF03130_consen 1 VRRAAARALGQIGD--------PRAIPALIEALED 27 (27)
T ss_dssp HHHHHHHHHGGG-S--------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC--------HHHHHHHHHHhcC
Confidence 67888888887764 3455666555543
No 197
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=89.57 E-value=2.8 Score=33.03 Aligned_cols=63 Identities=13% Similarity=0.200 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhcCCC----HHHHHHHHHhhHHHHHHhchhhhHh-hHHHHHHHhhcCCcHHHHHHHHHHH
Q psy14015 196 AELRSHFRNLCQDDT----PMVRRAAAGKLGELAKVVEVDYLKT-DIIPMFVNLAQDEQDSVRLLAVEAC 260 (318)
Q Consensus 196 ~~ll~~l~~l~~D~~----~~VR~~aa~~L~~l~~~~~~~~~~~-~llp~l~~ll~D~~~~VR~aa~~~l 260 (318)
..++..+.+.++... .++...+.+++..+...+..+.+.+ .+++.+.+++.+++- |.+|+++|
T Consensus 81 ~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~--~~~A~~cl 148 (148)
T PF08389_consen 81 PDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPEL--REAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHH--HHHHHHhC
Confidence 345555555554322 7888888888888887666555444 488888888877664 67776653
No 198
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=89.34 E-value=3.9 Score=39.99 Aligned_cols=68 Identities=21% Similarity=0.167 Sum_probs=45.4
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh------hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy14015 197 ELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY------LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIA 264 (318)
Q Consensus 197 ~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~------~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~ 264 (318)
.++.-+...+.++.+++|-++-.+|+.++..+.... ....+.-.+.....+....+|-++++-...+.
T Consensus 414 ~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~~f 487 (501)
T PF13001_consen 414 SLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANACF 487 (501)
T ss_pred HHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhC
Confidence 455555555689999999999999999998775311 11122223444556777888888887655544
No 199
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=89.33 E-value=8.3 Score=32.20 Aligned_cols=77 Identities=13% Similarity=0.127 Sum_probs=51.9
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhhHHH---HHHhchhh--hHhhHHHHHHHhhc-----------CCcHHHHHHHHHH
Q psy14015 196 AELRSHFRNLCQDDTPMVRRAAAGKLGEL---AKVVEVDY--LKTDIIPMFVNLAQ-----------DEQDSVRLLAVEA 259 (318)
Q Consensus 196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l---~~~~~~~~--~~~~llp~l~~ll~-----------D~~~~VR~aa~~~ 259 (318)
.++++.+...++-.+++|..++..+|-.+ ...+|+.. ....++|.+.-+.+ .....++....++
T Consensus 79 PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~et 158 (183)
T PF10274_consen 79 PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQET 158 (183)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHH
Confidence 56788888999999999999999999999 55556432 13345555542221 1234566777777
Q ss_pred HHHHHhhCChhhh
Q psy14015 260 CVSIASLLSQSDV 272 (318)
Q Consensus 260 l~~l~~~l~~~~~ 272 (318)
+..+-..-|++.+
T Consensus 159 L~~lE~~GG~dA~ 171 (183)
T PF10274_consen 159 LELLERNGGPDAF 171 (183)
T ss_pred HHHHHHhcChhHH
Confidence 7777777777654
No 200
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=89.24 E-value=1.7 Score=36.89 Aligned_cols=66 Identities=14% Similarity=0.056 Sum_probs=45.5
Q ss_pred hccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhcc
Q psy14015 89 HCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYP 158 (318)
Q Consensus 89 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~ 158 (318)
+...+.+...+.+++..+|.++...+...... ...+.++..+..+.+|+.+.+|++....|..+..
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~ 184 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGK 184 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 44667788888888888888887666555544 2223466777777788888888888777765543
No 201
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=89.16 E-value=7.6 Score=31.13 Aligned_cols=77 Identities=14% Similarity=0.061 Sum_probs=65.3
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh----hhHhhHHHHHHHhhcC-CcHHHHHHHHHHHHHHHhhCCh
Q psy14015 195 KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD----YLKTDIIPMFVNLAQD-EQDSVRLLAVEACVSIASLLSQ 269 (318)
Q Consensus 195 ~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~----~~~~~llp~l~~ll~D-~~~~VR~aa~~~l~~l~~~l~~ 269 (318)
-++.+..+.+-+++.+++|-..|..-|..++.++|.. .....++..+.+++.+ ....||..+...+...+..|..
T Consensus 35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 3677888888889999999999999999999999863 3345688888889988 7889999999999999998875
Q ss_pred hh
Q psy14015 270 SD 271 (318)
Q Consensus 270 ~~ 271 (318)
+.
T Consensus 115 ~~ 116 (144)
T cd03568 115 DP 116 (144)
T ss_pred Cc
Confidence 43
No 202
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=89.03 E-value=2.1 Score=35.94 Aligned_cols=68 Identities=18% Similarity=0.207 Sum_probs=54.5
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHh
Q psy14015 196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIAS 265 (318)
Q Consensus 196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~ 265 (318)
...++.+++++.+++..||..|..-+..+.+. |=- --...+|.+..|..||+..+|..|...+..+.+
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~q-GLv-nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQ-GLV-NPKQCVPTLIALETSPNPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-CCC-ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHH
Confidence 34567778899999999999999999877752 200 014699999999999999999999888888764
No 203
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=88.81 E-value=13 Score=31.42 Aligned_cols=67 Identities=21% Similarity=0.118 Sum_probs=52.4
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhh
Q psy14015 196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASL 266 (318)
Q Consensus 196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~ 266 (318)
+.+.+.+.+.+++++.-+|++++..+...... ...+.++..+..++.|+++.||.+...+|..++..
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~ 185 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK 185 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence 34678888999999988888887776555443 23467888999999999999999999998888854
No 204
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=88.60 E-value=1.2 Score=32.69 Aligned_cols=71 Identities=13% Similarity=0.171 Sum_probs=47.0
Q ss_pred CCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCC--HHHHHHH
Q psy14015 140 GDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDT--PMVRRAA 217 (318)
Q Consensus 140 d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~--~~VR~~a 217 (318)
++.|..|..|+.+++.++.+.+... +..+..+...+.+.+.|+. ...+.-|
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~---------------------------~~L~~Ri~~tl~k~l~d~~~~~~t~YGA 69 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSY---------------------------PTLQPRITRTLLKALLDPKKPLGTHYGA 69 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhcccc---------------------------chHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3468888888888776665544321 0234567788888888765 6688888
Q ss_pred HHhhHHHHHHhchhhhHhhHHHHH
Q psy14015 218 AGKLGELAKVVEVDYLKTDIIPMF 241 (318)
Q Consensus 218 a~~L~~l~~~~~~~~~~~~llp~l 241 (318)
+..|.+++ ++.+..-++|-+
T Consensus 70 i~gL~~lG----~~~vr~~ilP~l 89 (92)
T PF07571_consen 70 IVGLSALG----PEAVRALILPNL 89 (92)
T ss_pred HHHHHHHH----HHHHHHhhccCc
Confidence 88888874 455555566644
No 205
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=88.52 E-value=4 Score=37.77 Aligned_cols=132 Identities=13% Similarity=0.090 Sum_probs=75.2
Q ss_pred hcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccCch-hHHH--HHHHHHHHHHHhh------CChhHHhhh
Q psy14015 60 TIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEE-TVVR--DKAVESLRLISAQ------HSPHDLEAH 129 (318)
Q Consensus 60 l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~-~~VR--~~a~~~l~~l~~~------~~~~~~~~~ 129 (318)
.+.++++ -|..+...|.. ..-.+.++|.|..++.+.- ..+. ...+..+..++.. +.-+.+...
T Consensus 186 a~~~~~~~~r~~aL~sL~t-------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~ 258 (343)
T cd08050 186 ALVGSNEEKRREALQSLRT-------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQ 258 (343)
T ss_pred HHhCCCHHHHHHHHHHhcc-------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHH
Confidence 3333344 67776666552 2234668888888766541 2222 2223333333332 223556666
Q ss_pred HHHHHHHh------hc----CCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHH
Q psy14015 130 FVPLVQRL------AS----GDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELR 199 (318)
Q Consensus 130 ilp~~~~l------~~----d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll 199 (318)
++|.+... +. ++.|..|..|+.+++.++.+++.... .....+.
T Consensus 259 Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~---------------------------~l~~ri~ 311 (343)
T cd08050 259 LIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYN---------------------------TLQPRIT 311 (343)
T ss_pred HHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCC---------------------------cHHHHHH
Confidence 88877653 22 34588999998888877666554211 1345566
Q ss_pred HHHHHhhcCCC--HHHHHHHHHhhHHHH
Q psy14015 200 SHFRNLCQDDT--PMVRRAAAGKLGELA 225 (318)
Q Consensus 200 ~~l~~l~~D~~--~~VR~~aa~~L~~l~ 225 (318)
..+.+.+.|+. ......|+..|+.++
T Consensus 312 ~tl~k~l~d~~~~~~~~YGAi~GL~~lG 339 (343)
T cd08050 312 RTLLKALLDPKKPLTTHYGAIVGLSALG 339 (343)
T ss_pred HHHHHHHcCCCCCcchhhHHHHHHHHhC
Confidence 67777777665 334777777777665
No 206
>KOG2149|consensus
Probab=88.41 E-value=5.4 Score=37.22 Aligned_cols=112 Identities=20% Similarity=0.240 Sum_probs=81.3
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhH---hhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCccc---c
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERT---RGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPE---Y 87 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~---~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~---~ 87 (318)
+..++..+++-+..+|..+...|-.+-+.- +... ...+++.+..+..|++. ||.+....+..+....+.+. .
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~-p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSH-PAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhC-hHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcch
Confidence 567788999999999999999999986552 2222 34566666677777766 99999988887665443322 2
Q ss_pred hhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHh
Q psy14015 88 VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLE 127 (318)
Q Consensus 88 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~ 127 (318)
...++|.+......--+.||.-++.-+.-++..+++....
T Consensus 139 ~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~ 178 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSR 178 (393)
T ss_pred HHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHH
Confidence 2335555555556667899999999999999999885433
No 207
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=87.64 E-value=5.9 Score=36.06 Aligned_cols=131 Identities=9% Similarity=0.089 Sum_probs=58.5
Q ss_pred HHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcC-
Q psy14015 130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQD- 208 (318)
Q Consensus 130 ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D- 208 (318)
+-|++. +++.+++.+...|+.++..++..-+..... ..+..++.+.+.+.+
T Consensus 107 ~~~fl~-ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~---------------------------~~~~~l~~ll~~L~~~ 158 (312)
T PF03224_consen 107 YSPFLK-LLDRNDSFIQLKAAFILTSLLSQGPKRSEK---------------------------LVKEALPKLLQWLSSQ 158 (312)
T ss_dssp HHHHHH-H-S-SSHHHHHHHHHHHHHHHTSTTT--HH---------------------------HHHHHHHHHHHHHH-T
T ss_pred HHHHHH-HhcCCCHHHHHHHHHHHHHHHHcCCccccc---------------------------hHHHHHHHHHHHHHHh
Confidence 455554 666678888888888888765544332111 002334444444332
Q ss_pred ---CCHHHHHHHHHhhHHHHHHhc--hhhhHhhHHHHHHHhh-----cCCcHHHHHHHHHHHHHHHhhCChhhh----hH
Q psy14015 209 ---DTPMVRRAAAGKLGELAKVVE--VDYLKTDIIPMFVNLA-----QDEQDSVRLLAVEACVSIASLLSQSDV----EQ 274 (318)
Q Consensus 209 ---~~~~VR~~aa~~L~~l~~~~~--~~~~~~~llp~l~~ll-----~D~~~~VR~aa~~~l~~l~~~l~~~~~----~~ 274 (318)
++.++...++.+|+.+...-. .-......++.+..++ .+..-.++-..-..+--..-.|.++.. ..
T Consensus 159 l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~ 238 (312)
T PF03224_consen 159 LSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKK 238 (312)
T ss_dssp T-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTT
T ss_pred hcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhcc
Confidence 445566777777777764211 1111234555555555 233333333222222223333444321 23
Q ss_pred hhHHHHHHhccccc
Q psy14015 275 LVMPTLRQCSVQIV 288 (318)
Q Consensus 275 ~l~p~l~~ll~D~~ 288 (318)
.++|.+...+++..
T Consensus 239 ~~i~~L~~i~~~~~ 252 (312)
T PF03224_consen 239 YLIPLLADILKDSI 252 (312)
T ss_dssp SHHHHHHHHHHH--
T ss_pred chHHHHHHHHHhcc
Confidence 47777777777644
No 208
>KOG2973|consensus
Probab=87.30 E-value=4.3 Score=36.67 Aligned_cols=20 Identities=35% Similarity=0.247 Sum_probs=8.7
Q ss_pred hhhccCchhHHHHHHHHHHH
Q psy14015 96 ESLATVEETVVRDKAVESLR 115 (318)
Q Consensus 96 ~~l~~d~~~~VR~~a~~~l~ 115 (318)
..|+.+.++.||.+|+.++.
T Consensus 9 v~ll~~~sP~v~~~AV~~l~ 28 (353)
T KOG2973|consen 9 VELLHSLSPPVRKAAVEHLL 28 (353)
T ss_pred HHHhccCChHHHHHHHHHHh
Confidence 33444444444444444433
No 209
>KOG2081|consensus
Probab=87.17 E-value=16 Score=35.59 Aligned_cols=87 Identities=17% Similarity=0.174 Sum_probs=64.2
Q ss_pred HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcC--CCch
Q psy14015 67 VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASG--DWFT 144 (318)
Q Consensus 67 VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d--~~~~ 144 (318)
-|..+...+...+-.+|+....+.++-.+.. ..+.+..-++++..+-.+++...++. +.++|-+.++..+ ....
T Consensus 368 fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e--~~i~pevl~~i~nlp~Q~~ 443 (559)
T KOG2081|consen 368 FRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEE--NTIMPEVLKLICNLPEQAP 443 (559)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccc--cchHHHHHHHHhCCccchh
Confidence 7999999999999999987665544444444 45568888999999999999887642 4567777665443 2355
Q ss_pred hhhhhhhhhhhhc
Q psy14015 145 SRTSACGLFSVCY 157 (318)
Q Consensus 145 vR~~a~~~l~~~~ 157 (318)
+|+.++.++|.+.
T Consensus 444 ~~~ts~ll~g~~~ 456 (559)
T KOG2081|consen 444 LRYTSILLLGEYS 456 (559)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998888653
No 210
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=86.71 E-value=4.3 Score=31.38 Aligned_cols=69 Identities=20% Similarity=0.255 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhc-CCCHHHHHHHHHhhHHHHHHhch--hhhHh-hHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy14015 196 AELRSHFRNLCQ-DDTPMVRRAAAGKLGELAKVVEV--DYLKT-DIIPMFVNLAQDEQDSVRLLAVEACVSIA 264 (318)
Q Consensus 196 ~~ll~~l~~l~~-D~~~~VR~~aa~~L~~l~~~~~~--~~~~~-~llp~l~~ll~D~~~~VR~aa~~~l~~l~ 264 (318)
-+++..+.+++. ..++.+-..|+.-+|+++..... ..+.. ..-..+..|++++++.||.-|+.++..+.
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 467888888884 44677888899999999987632 22211 25567789999999999999998887764
No 211
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=86.42 E-value=0.8 Score=25.73 Aligned_cols=29 Identities=21% Similarity=0.123 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccc
Q psy14015 250 DSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQ 286 (318)
Q Consensus 250 ~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D 286 (318)
|.||..++.+|+++. . +..+|.|.++++|
T Consensus 1 ~~vR~~aa~aLg~~~----~----~~a~~~L~~~l~d 29 (30)
T smart00567 1 PLVRHEAAFALGQLG----D----EEAVPALIKALED 29 (30)
T ss_pred CHHHHHHHHHHHHcC----C----HhHHHHHHHHhcC
Confidence 579999999999874 2 3456788888887
No 212
>KOG3036|consensus
Probab=86.29 E-value=3.2 Score=36.22 Aligned_cols=126 Identities=17% Similarity=0.144 Sum_probs=79.5
Q ss_pred cchhccchHHhhhccCc-hhHHHHHHHHHHHHHHhhCChhH----HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccc-
Q psy14015 86 EYVHCLLPPLESLATVE-ETVVRDKAVESLRLISAQHSPHD----LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPR- 159 (318)
Q Consensus 86 ~~~~~llp~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~~~----~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~- 159 (318)
...-+++|.+..-.++. .+..|..++..++.+.+.-..+. ....++|...+.....+...+..|+.++++|+..
T Consensus 120 ~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlldD 199 (293)
T KOG3036|consen 120 HIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLDD 199 (293)
T ss_pred cChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhcc
Confidence 34566888887765544 68889999999999998776653 2234899998888888888888999999887532
Q ss_pred cCcchH-------HHHHHHHH----hhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHH
Q psy14015 160 VTAGVK-------AELRSHFR----NLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGEL 224 (318)
Q Consensus 160 ~~~~~~-------~~l~~~~~----~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l 224 (318)
.+-..- +.....++ ++.+..++ ..-++.+.++..++ ++++.|.+...+++.-
T Consensus 200 ~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~-----------RllKhviRcYlrLs--dnprar~aL~~clPd~ 262 (293)
T KOG3036|consen 200 VGLYYICQTAERFSAVALVLGKMVFQLVSMPSP-----------RLLKHVIRCYLRLS--DNPRARAALRSCLPDQ 262 (293)
T ss_pred ccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCH-----------HHHHHHHHHHHHhc--CCHHHHHHHHhhCcch
Confidence 111100 01111121 22222222 24466777777775 4567777766666644
No 213
>KOG1851|consensus
Probab=86.28 E-value=19 Score=39.41 Aligned_cols=162 Identities=12% Similarity=0.018 Sum_probs=87.0
Q ss_pred HhhChHhHhhchhhhhhhhcCC-hHH-HHHHHHHHHcccc--cCcC-cccchhccchHHhhhccCchhHHHHHHHHHHHH
Q psy14015 42 LALGQERTRGELIPFLTETIYD-EDE-VLLALAEQLGTFT--PNVG-GPEYVHCLLPPLESLATVEETVVRDKAVESLRL 116 (318)
Q Consensus 42 ~~lg~~~~~~~llp~l~~l~~D-~~~-VR~~aa~~L~~l~--~~~~-~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~ 116 (318)
...|+. ...+++-.+..+..| ..| ||.++.+-+-.+. ..++ .+...+.|--++..++.|.+-.||+.|+++|..
T Consensus 1517 ~~~~~~-l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsg 1595 (1710)
T KOG1851|consen 1517 SWIGHH-LQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSG 1595 (1710)
T ss_pred hccchh-hHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Confidence 345555 445556666544444 567 9988666554432 1222 233445677788999999988999999999988
Q ss_pred HHhhCChhHHhhhHHHHHHHh-hcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccch
Q psy14015 117 ISAQHSPHDLEAHFVPLVQRL-ASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVK 195 (318)
Q Consensus 117 l~~~~~~~~~~~~ilp~~~~l-~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~ 195 (318)
+..-.-........-+..... .+.....-+..|+..+|.++..++-.+..++
T Consensus 1596 l~~~s~~~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wi--------------------------- 1648 (1710)
T KOG1851|consen 1596 LLQGSKFQFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWI--------------------------- 1648 (1710)
T ss_pred HHhccccccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhh---------------------------
Confidence 875322111111111111111 1222233344555555554433332211111
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh
Q psy14015 196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY 232 (318)
Q Consensus 196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~ 232 (318)
.+.+..+.....|+ ..+++++-+.+.++-.....+|
T Consensus 1649 p~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth~D~W 1684 (1710)
T KOG1851|consen 1649 PKPLMNLSSFARES-AAIKQTVKKTVSEFRRTHADTW 1684 (1710)
T ss_pred HHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHhhhhh
Confidence 22233333444444 7888888888888877655444
No 214
>KOG1837|consensus
Probab=86.10 E-value=1.6 Score=47.16 Aligned_cols=79 Identities=23% Similarity=0.325 Sum_probs=58.3
Q ss_pred CCCCCCCch-HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHh--HhhchhhhhhhhcCChHH-HHHHHHHHHcccccC
Q psy14015 6 SAPDDSLYP-IAVLIDELKNEDVQLRLNSIKKLSTIALALGQER--TRGELIPFLTETIYDEDE-VLLALAEQLGTFTPN 81 (318)
Q Consensus 6 ~~~~~~l~~-i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~--~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~ 81 (318)
.++++.+.| +.+.+....++.+..|..++..+..+...+|... ...+++||+.++++|+++ |-+.+.+....+-..
T Consensus 1533 ~a~~~d~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~ 1612 (1621)
T KOG1837|consen 1533 VADKDDLKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEV 1612 (1621)
T ss_pred cCChhhhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 344444777 5667778889999999999999999988888764 356789999999998776 876666655555444
Q ss_pred cCc
Q psy14015 82 VGG 84 (318)
Q Consensus 82 ~~~ 84 (318)
+|.
T Consensus 1613 lGE 1615 (1621)
T KOG1837|consen 1613 LGE 1615 (1621)
T ss_pred hch
Confidence 443
No 215
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=85.06 E-value=20 Score=30.53 Aligned_cols=123 Identities=15% Similarity=0.072 Sum_probs=76.4
Q ss_pred hcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCC-hHH-HHHHHH-HHHcccccCcCcccchhccchHHhhh
Q psy14015 22 LKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYD-EDE-VLLALA-EQLGTFTPNVGGPEYVHCLLPPLESL 98 (318)
Q Consensus 22 l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D-~~~-VR~~aa-~~L~~l~~~~~~~~~~~~llp~l~~l 98 (318)
.++...+.|..++..|..--..+.++ -++.+..++.+ +.| +=...+ ..++.+.. . .+...+.+..+
T Consensus 55 w~~~~~E~r~~al~~l~~~~~~~~~~-----~~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~--~----~~~~~~~l~~W 123 (208)
T cd07064 55 WQQPEREYQYVAIDLLRKYKKFLTPE-----DLPLLEELITTKSWWDTVDSLAKVVGGILLA--D----YPEFEPVMDEW 123 (208)
T ss_pred HcchHHHHHHHHHHHHHHHHhcCCHH-----HHHHHHHHHcCCchHHHHHHHHHHHhHHHHh--C----ChhHHHHHHHH
Confidence 34554567777777666643333333 25666666665 445 333333 33344321 1 12236788999
Q ss_pred ccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccc
Q psy14015 99 ATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPR 159 (318)
Q Consensus 99 ~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~ 159 (318)
..|++--.|.+|+-+...+.+.... +.+..++..+++|+.+.++++....|..+...
T Consensus 124 ~~s~~~W~rR~ai~~~l~~~~~~~~----~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~ 180 (208)
T cd07064 124 STDENFWLRRTAILHQLKYKEKTDT----DLLFEIILANLGSKEFFIRKAIGWALREYSKT 180 (208)
T ss_pred HcCCcHHHHHHHHHHHHHHHHccCH----HHHHHHHHHhCCChHHHHHHHHHHHHHHHhcc
Confidence 9999988888888776666655333 34666677888999999999987777655443
No 216
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=84.50 E-value=14 Score=30.31 Aligned_cols=106 Identities=15% Similarity=0.128 Sum_probs=63.3
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhch---hhhhhhhcCCh-HH-HHHHHHHHHcccccCcCc-ccc-
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGEL---IPFLTETIYDE-DE-VLLALAEQLGTFTPNVGG-PEY- 87 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~l---lp~l~~l~~D~-~~-VR~~aa~~L~~l~~~~~~-~~~- 87 (318)
...+-..++|.++..|-..+.-+..+....|.+.+...- +..+...++.+ .. ++..+...|..+....++ +..
T Consensus 27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~ 106 (165)
T PF08167_consen 27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLT 106 (165)
T ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchH
Confidence 455667889999999999888888888777666543333 33334444443 33 888888888877654432 111
Q ss_pred -------hhccchHHhhhccCchhHHHHHHHHHHHHHHhhCC
Q psy14015 88 -------VHCLLPPLESLATVEETVVRDKAVESLRLISAQHS 122 (318)
Q Consensus 88 -------~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~ 122 (318)
...+++.+.+++++ ..+...+++++..+....+
T Consensus 107 Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 107 REIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHP 146 (165)
T ss_pred HHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence 12233333333333 4555566666666665543
No 217
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=83.83 E-value=1.9 Score=26.67 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.8
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHh
Q psy14015 195 KAELRSHFRNLCQDDTPMVRRAAAGK 220 (318)
Q Consensus 195 ~~~ll~~l~~l~~D~~~~VR~~aa~~ 220 (318)
.+.++..+.+.+.|+++.||+++...
T Consensus 16 ~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 16 SSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred hHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 36788999999999999999998764
No 218
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=83.80 E-value=15 Score=29.41 Aligned_cols=76 Identities=12% Similarity=0.159 Sum_probs=54.8
Q ss_pred HHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcC-
Q psy14015 130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQD- 208 (318)
Q Consensus 130 ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D- 208 (318)
.+..+.+-++..+..+-..|..++..+....+..+..++ ..+.++..+.+++++
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~ev-------------------------ask~Fl~eL~kl~~~~ 92 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEV-------------------------ASRDFTQELKKLINDR 92 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHH-------------------------hhHHHHHHHHHHhccc
Confidence 444455555666777777788887777766666555443 346677888888888
Q ss_pred CCHHHHHHHHHhhHHHHHHhch
Q psy14015 209 DTPMVRRAAAGKLGELAKVVEV 230 (318)
Q Consensus 209 ~~~~VR~~aa~~L~~l~~~~~~ 230 (318)
....||.-+..-+...+..+..
T Consensus 93 ~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 93 VHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred CCHHHHHHHHHHHHHHHHHhCC
Confidence 6789999999999999887764
No 219
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=83.55 E-value=36 Score=31.25 Aligned_cols=198 Identities=11% Similarity=0.038 Sum_probs=106.3
Q ss_pred chhccchHHhhhcc-CchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhcc----ccC
Q psy14015 87 YVHCLLPPLESLAT-VEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYP----RVT 161 (318)
Q Consensus 87 ~~~~llp~l~~l~~-d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~----~~~ 161 (318)
....++..+..++. +.++......+.++..=+..+ ...+...++..+.+-++|+...+|..-...++.++. ...
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~-~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~ 97 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL-SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDS 97 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh-CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchH
Confidence 34445555555544 457777888888888877766 233445577888888899877799888888777664 111
Q ss_pred ----cchHHHHHHHHHhhccCCCccccc-----c-hhhc------Cc-------------cchHH-H-HHHHH-HhhcCC
Q psy14015 162 ----AGVKAELRSHFRNLCQDDTPMQQG-----H-VWEC------GS-------------GVKAE-L-RSHFR-NLCQDD 209 (318)
Q Consensus 162 ----~~~~~~l~~~~~~l~~~~~~~vR~-----~-v~~~------~~-------------~~~~~-l-l~~l~-~l~~D~ 209 (318)
..+-..+.+.+.+......+.... . +... .. .-+.. + -+-+. +++.++
T Consensus 98 ~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~~~ 177 (339)
T PF12074_consen 98 LKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLASEE 177 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCCHh
Confidence 112223333344433433332110 0 0000 00 00011 1 12222 223322
Q ss_pred C--HHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCC--cHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhcc
Q psy14015 210 T--PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDE--QDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSV 285 (318)
Q Consensus 210 ~--~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~--~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~ 285 (318)
+ |-+|... .-+.........+. ...+-.++..++..+ .|.||+.+...+..+...-+.. ....++..+...+.
T Consensus 178 d~~w~~~al~-~~~~~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~-l~~~li~~l~~~l~ 254 (339)
T PF12074_consen 178 DLCWLLRALE-ALLSDHPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL-LSKSLISGLWKWLS 254 (339)
T ss_pred HHHHHHHHHH-HHHhcchhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHH
Confidence 2 4444322 11122222112222 244566777888888 9999999999998887665544 45567777777776
Q ss_pred ccc
Q psy14015 286 QIV 288 (318)
Q Consensus 286 D~~ 288 (318)
+..
T Consensus 255 ~~~ 257 (339)
T PF12074_consen 255 SSE 257 (339)
T ss_pred hcc
Confidence 533
No 220
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=83.22 E-value=21 Score=28.30 Aligned_cols=77 Identities=17% Similarity=0.182 Sum_probs=60.1
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh----hHhhHHHHHHHhhcCCcH--H--HHHHHHHHHHHHHhhC
Q psy14015 196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY----LKTDIIPMFVNLAQDEQD--S--VRLLAVEACVSIASLL 267 (318)
Q Consensus 196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~----~~~~llp~l~~ll~D~~~--~--VR~aa~~~l~~l~~~l 267 (318)
++.+..+.+-++..++.|...|..-|..+..++|... ....++..+..++.++.. . ||..+...+...+..|
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 6778889999999999999999999999999888643 223467777776665433 2 9999999999999999
Q ss_pred Chhhh
Q psy14015 268 SQSDV 272 (318)
Q Consensus 268 ~~~~~ 272 (318)
+....
T Consensus 121 ~~~~~ 125 (140)
T PF00790_consen 121 KSDPE 125 (140)
T ss_dssp TTSTT
T ss_pred CCCCC
Confidence 55433
No 221
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=83.07 E-value=2.3 Score=25.26 Aligned_cols=28 Identities=21% Similarity=0.163 Sum_probs=24.2
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHhhHHHH
Q psy14015 198 LRSHFRNLCQDDTPMVRRAAAGKLGELA 225 (318)
Q Consensus 198 ll~~l~~l~~D~~~~VR~~aa~~L~~l~ 225 (318)
.++.+.++++.+++.+++.++.+|..++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5788888888889999999999998775
No 222
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=82.81 E-value=6.1 Score=37.96 Aligned_cols=79 Identities=23% Similarity=0.171 Sum_probs=63.6
Q ss_pred CCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhh---HhhHHHHHHhc
Q psy14015 208 DDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE---QLVMPTLRQCS 284 (318)
Q Consensus 208 D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~---~~l~p~l~~ll 284 (318)
|...+.|-.++++||.++..+..+......-|.+...++.++..-|..++-.+..++......... +.+.+.|..+|
T Consensus 98 d~v~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L 177 (441)
T PF12054_consen 98 DVVIRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL 177 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH
Confidence 455788999999999999998665443334457899999999999999999999999877654333 47888899999
Q ss_pred cc
Q psy14015 285 VQ 286 (318)
Q Consensus 285 ~D 286 (318)
.+
T Consensus 178 ~~ 179 (441)
T PF12054_consen 178 EN 179 (441)
T ss_pred cC
Confidence 87
No 223
>KOG2549|consensus
Probab=82.76 E-value=16 Score=35.56 Aligned_cols=163 Identities=18% Similarity=0.181 Sum_probs=90.8
Q ss_pred ChHHHHHHHHHHHcccccCcCcccchhccchHHhhhccCc-hhHHHHHHHHHHHHHHh---hC--C----hhHHhhhHHH
Q psy14015 63 DEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVE-ETVVRDKAVESLRLISA---QH--S----PHDLEAHFVP 132 (318)
Q Consensus 63 D~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~-~~~VR~~a~~~l~~l~~---~~--~----~~~~~~~ilp 132 (318)
+++.-|.+|...|..=. =.+.++|.|..++.+. .-.|-..-++-|.++.. .+ + -+-+...++|
T Consensus 219 ~~~~~r~eAL~sL~TDs-------GL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~P 291 (576)
T KOG2549|consen 219 SDEPLRQEALQSLETDS-------GLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVP 291 (576)
T ss_pred CCHHHHHHHHHhhccCc-------cHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhh
Confidence 34447887777765321 1355777777765543 12211122222222222 11 1 1445566777
Q ss_pred HHHH------hhc----CCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHH
Q psy14015 133 LVQR------LAS----GDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHF 202 (318)
Q Consensus 133 ~~~~------l~~----d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l 202 (318)
.+.. |+. |..|..|-.|+.++..++..++..+.. ....+...+
T Consensus 292 SvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~---------------------------L~~Rit~tl 344 (576)
T KOG2549|consen 292 SVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN---------------------------LQPRITRTL 344 (576)
T ss_pred HHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH---------------------------HHHHHHHHH
Confidence 6654 332 345888888888887776665543221 235677788
Q ss_pred HHhhcCC--CHHHHHHHHHhhHHHHHHhchhhhHhhHHHH----------------HHH-hhcCCcHHHHHHHHHHHHHH
Q psy14015 203 RNLCQDD--TPMVRRAAAGKLGELAKVVEVDYLKTDIIPM----------------FVN-LAQDEQDSVRLLAVEACVSI 263 (318)
Q Consensus 203 ~~l~~D~--~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~----------------l~~-ll~D~~~~VR~aa~~~l~~l 263 (318)
.+.+.|+ .+...+-++..|.+++... +..-++|- ..+ +-....+.++.+...++..+
T Consensus 345 ~k~l~D~~~~~st~YGai~gL~~lg~~~----I~~~ilp~L~~~~~~l~~~l~~~~~~n~~~i~ea~~v~~~llk~~~~i 420 (576)
T KOG2549|consen 345 SKALLDNKKPLSTHYGAIAGLSELGHEV----IRTVILPNLKEYNERLQSVLDVESLSNQLDIYEANKVYGALLKAENPI 420 (576)
T ss_pred HHHhcCCCCCchhhhhHHHHHHHhhhhh----hhheeccchHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHhhHH
Confidence 8888886 4788999999998888621 11112221 111 22455667777777777764
No 224
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=82.67 E-value=9.2 Score=31.89 Aligned_cols=64 Identities=20% Similarity=0.093 Sum_probs=52.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhh
Q psy14015 200 SHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASL 266 (318)
Q Consensus 200 ~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~ 266 (318)
+.+.....|++.-+|+++...+...... +...+.++.....+..|++..||.+...+|..++..
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~ 171 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK 171 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 6778888899977777777776665553 223577999999999999999999999999999976
No 225
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=82.22 E-value=26 Score=28.64 Aligned_cols=113 Identities=18% Similarity=0.154 Sum_probs=69.1
Q ss_pred hhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhh
Q psy14015 127 EAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLC 206 (318)
Q Consensus 127 ~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~ 206 (318)
.+.+...+.+++++++...|..++.+++..+...+++. |. + .....+..+.+.+
T Consensus 23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~-------l~---~----------------~~~~W~~~Ll~~L 76 (165)
T PF08167_consen 23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEI-------LL---S----------------HGSQWLRALLSIL 76 (165)
T ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHH-------HH---H----------------HHHHHHHHHHHHH
Confidence 34467778889999999999999888887665543321 10 0 0123344455555
Q ss_pred cC-CCHHHHHHHHHhhHHHHHHhch------hh---hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhC
Q psy14015 207 QD-DTPMVRRAAAGKLGELAKVVEV------DY---LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLL 267 (318)
Q Consensus 207 ~D-~~~~VR~~aa~~L~~l~~~~~~------~~---~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l 267 (318)
+. +...+++.++..+..+....+. |. ....+++.+.+++++ ..+...++.++..+....
T Consensus 77 ~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ 145 (165)
T PF08167_consen 77 EKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH 145 (165)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC
Confidence 44 4467788888888888876542 11 123355555666665 445667777777776544
No 226
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=82.18 E-value=1.9 Score=36.03 Aligned_cols=55 Identities=24% Similarity=0.235 Sum_probs=41.3
Q ss_pred HHHHHHHHhhHHHHHHhchhh---hHhhHH------------HHHHHhhcCCcHHHHHHHHHHHHHHHhh
Q psy14015 212 MVRRAAAGKLGELAKVVEVDY---LKTDII------------PMFVNLAQDEQDSVRLLAVEACVSIASL 266 (318)
Q Consensus 212 ~VR~~aa~~L~~l~~~~~~~~---~~~~ll------------p~l~~ll~D~~~~VR~aa~~~l~~l~~~ 266 (318)
.||.+|..+|..+++..++.. .+..++ +.+.-++.||+..||.+++.++..+.+.
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~g 70 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEG 70 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHc
Confidence 489999999999999854321 122333 3456778999999999999999988753
No 227
>KOG1848|consensus
Probab=82.08 E-value=50 Score=36.01 Aligned_cols=222 Identities=12% Similarity=0.113 Sum_probs=110.2
Q ss_pred cCccHHHHHHHHHhHHHHHHhhChHh--HhhchhhhhhhhcCChHH----HHHHHHHHHcccccC-cC--cccchhccch
Q psy14015 23 KNEDVQLRLNSIKKLSTIALALGQER--TRGELIPFLTETIYDEDE----VLLALAEQLGTFTPN-VG--GPEYVHCLLP 93 (318)
Q Consensus 23 ~~~~~~~R~~~~~~L~~ia~~lg~~~--~~~~llp~l~~l~~D~~~----VR~~aa~~L~~l~~~-~~--~~~~~~~llp 93 (318)
.++-.++|+..++.+-.+....|.-- .+..++..+..+.+-..+ +-+..-..|.-+..- +. +......++.
T Consensus 852 s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lid 931 (1610)
T KOG1848|consen 852 SSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLID 931 (1610)
T ss_pred cCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHH
Confidence 36667899999999999877766421 255566555544433322 212222222222111 10 1122233344
Q ss_pred HHhhhcc-CchhHHHHHHHHHHHHHHhhCCh------hH-----------------------HhhhHHHHHHHhhcCCCc
Q psy14015 94 PLESLAT-VEETVVRDKAVESLRLISAQHSP------HD-----------------------LEAHFVPLVQRLASGDWF 143 (318)
Q Consensus 94 ~l~~l~~-d~~~~VR~~a~~~l~~l~~~~~~------~~-----------------------~~~~ilp~~~~l~~d~~~ 143 (318)
.+..+.. .+|-+|--.|+..+-.+..++.. ++ .--.++..+.++++|+..
T Consensus 932 tl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr~ 1011 (1610)
T KOG1848|consen 932 TLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSRA 1011 (1610)
T ss_pred HHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccchH
Confidence 4444432 33445555555555544443321 11 111234455667788888
Q ss_pred hhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhh---cCC--CHHH----H
Q psy14015 144 TSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLC---QDD--TPMV----R 214 (318)
Q Consensus 144 ~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~---~D~--~~~V----R 214 (318)
.||.+|+..|-.++..=+. ..++. .|. ...+..++|.+-+.- .++ ..++ -
T Consensus 1012 eVRngAvqtlfri~~Shg~---------------~l~~~----aW~--s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwt 1070 (1610)
T KOG1848|consen 1012 EVRNGAVQTLFRIFNSHGS---------------KLGTN----AWA--SCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWT 1070 (1610)
T ss_pred HHhhhHHHHHHHHHhhhcc---------------cCChh----HHH--HHHHHHHHHHhccccccchhhhcchhHhhhhh
Confidence 8888888876544332221 11110 000 001122223322000 000 0111 1
Q ss_pred HHHHHhhHHHHHHhch-----------hhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHh
Q psy14015 215 RAAAGKLGELAKVVEV-----------DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIAS 265 (318)
Q Consensus 215 ~~aa~~L~~l~~~~~~-----------~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~ 265 (318)
..+.-.++.++..+.. -.+++.++.+++++..|.++.+-.++..++..+..
T Consensus 1071 et~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1071 ETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence 2344444444444321 13578999999999999999999999998888763
No 228
>KOG2149|consensus
Probab=81.98 E-value=19 Score=33.68 Aligned_cols=89 Identities=12% Similarity=0.115 Sum_probs=68.7
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh---hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhh
Q psy14015 196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY---LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV 272 (318)
Q Consensus 196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~---~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~ 272 (318)
..+++....+..|++..||....+.+-.++...+++. ...-++|++...+..-.+.+|.-+..-+.-+...+++.-+
T Consensus 98 ~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~ 177 (393)
T KOG2149|consen 98 YALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFS 177 (393)
T ss_pred HHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHH
Confidence 3466777888899999999999998888887766554 2445888999999999999999999999999999888654
Q ss_pred hH--hhHHHHHHhc
Q psy14015 273 EQ--LVMPTLRQCS 284 (318)
Q Consensus 273 ~~--~l~p~l~~ll 284 (318)
.. .+++.+...+
T Consensus 178 ~~~~~il~n~~d~i 191 (393)
T KOG2149|consen 178 RYASKILENFKDVI 191 (393)
T ss_pred HHHHHHHHHHHHHH
Confidence 32 2455444443
No 229
>KOG2213|consensus
Probab=80.55 E-value=6.9 Score=36.47 Aligned_cols=47 Identities=26% Similarity=0.269 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhc
Q psy14015 196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQ 246 (318)
Q Consensus 196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~ 246 (318)
.+.+.+-+.+|.|++-.||..|++.|+.+|.- +....+.|.+.++++
T Consensus 60 ~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~----d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 60 DEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG----DALSRVNDVLVQLLN 106 (460)
T ss_pred hHHHHhhhccccccchhhHHHHHhccchhccC----chhhhhHHHHHHHHH
Confidence 45578889999999999999999999999973 334556666666665
No 230
>KOG2005|consensus
Probab=80.29 E-value=69 Score=32.33 Aligned_cols=58 Identities=16% Similarity=0.079 Sum_probs=40.8
Q ss_pred hhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCCCCchhhHHh
Q psy14015 235 TDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVI 306 (318)
Q Consensus 235 ~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i 306 (318)
+..+-.|.+++.--++.+|++.--+++-++..=+ +-.++..+.++.+| .+++|-.+.|
T Consensus 639 eM~lR~f~h~l~yge~~iRravPLal~llsvSNP----q~~vlDtLsk~shd----------~D~eva~naI 696 (878)
T KOG2005|consen 639 EMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNP----QVNVLDTLSKFSHD----------GDLEVAMNAI 696 (878)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCC----cchHHHHHHHhccC----------cchHHHHHHH
Confidence 4566678888888888888888777776663322 23567778888888 6777766665
No 231
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=79.73 E-value=4.9 Score=28.15 Aligned_cols=53 Identities=23% Similarity=0.242 Sum_probs=40.2
Q ss_pred HHHHHHhhHHHHHH-hchhhhH-hhHHHHHHHhh-cCCcHHHHHHHHHHHHHHHhh
Q psy14015 214 RRAAAGKLGELAKV-VEVDYLK-TDIIPMFVNLA-QDEQDSVRLLAVEACVSIASL 266 (318)
Q Consensus 214 R~~aa~~L~~l~~~-~~~~~~~-~~llp~l~~ll-~D~~~~VR~aa~~~l~~l~~~ 266 (318)
.|++..++|.++.. .|-+.+. ..+++.+.++. +.|.+.+|..+.-+++-++..
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 57888999998854 4555443 35888776665 588999999999999998853
No 232
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=79.49 E-value=15 Score=26.55 Aligned_cols=66 Identities=14% Similarity=0.130 Sum_probs=48.2
Q ss_pred chHHHHHHHHHhh-cCCCHHHHHHHHHhhHHHHHHhchhh--hHhhHHHHHHHhhcCCcHHHHHHHHHH
Q psy14015 194 VKAELRSHFRNLC-QDDTPMVRRAAAGKLGELAKVVEVDY--LKTDIIPMFVNLAQDEQDSVRLLAVEA 259 (318)
Q Consensus 194 ~~~~ll~~l~~l~-~D~~~~VR~~aa~~L~~l~~~~~~~~--~~~~llp~l~~ll~D~~~~VR~aa~~~ 259 (318)
+.+.++.+|..+. +..+.+||.....++..+....|..- =+..++.++....+|.+..+=..+...
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~ 82 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQI 82 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 4567777887774 45679999999999999998766431 146788889988888766554444444
No 233
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=79.41 E-value=38 Score=28.83 Aligned_cols=131 Identities=16% Similarity=0.137 Sum_probs=79.1
Q ss_pred cchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcC-CCchh-hhhhhhhhhhhccccCcchHHHH
Q psy14015 91 LLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASG-DWFTS-RTSACGLFSVCYPRVTAGVKAEL 168 (318)
Q Consensus 91 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d-~~~~v-R~~a~~~l~~~~~~~~~~~~~~l 168 (318)
+..++..|..++..+.|..|+..+...-...+.++ ++.+.+++.+ ++|.. -..+..++|.
T Consensus 47 ~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~~-----~~~~~~~l~~~~~Wd~vD~~~~~i~g~------------- 108 (208)
T cd07064 47 LWELVLELWQQPEREYQYVAIDLLRKYKKFLTPED-----LPLLEELITTKSWWDTVDSLAKVVGGI------------- 108 (208)
T ss_pred HHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCHHH-----HHHHHHHHcCCchHHHHHHHHHHHhHH-------------
Confidence 44556667777788888888887777665555543 3334444444 33431 2222111111
Q ss_pred HHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCC-HHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcC
Q psy14015 169 RSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDT-PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQD 247 (318)
Q Consensus 169 ~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~-~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D 247 (318)
+.. ....+.+.+.+...|++ |..|-++...+. +.+.. -.+.+..+...++.|
T Consensus 109 ------~~~----------------~~~~~~~~l~~W~~s~~~W~rR~ai~~~l~-~~~~~----~~~~l~~~~~~~~~d 161 (208)
T cd07064 109 ------LLA----------------DYPEFEPVMDEWSTDENFWLRRTAILHQLK-YKEKT----DTDLLFEIILANLGS 161 (208)
T ss_pred ------HHh----------------CChhHHHHHHHHHcCCcHHHHHHHHHHHHH-HHHcc----CHHHHHHHHHHhCCC
Confidence 100 11334677888888888 555555544333 33321 135677788899999
Q ss_pred CcHHHHHHHHHHHHHHHhh
Q psy14015 248 EQDSVRLLAVEACVSIASL 266 (318)
Q Consensus 248 ~~~~VR~aa~~~l~~l~~~ 266 (318)
++.-||+++..+|-.+++.
T Consensus 162 ~e~fI~KAiGW~LRe~~k~ 180 (208)
T cd07064 162 KEFFIRKAIGWALREYSKT 180 (208)
T ss_pred hHHHHHHHHHHHHHHHhcc
Confidence 9999999999999888854
No 234
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=78.82 E-value=25 Score=26.45 Aligned_cols=76 Identities=16% Similarity=0.198 Sum_probs=55.5
Q ss_pred HHHHHhhcC----CCHHHHHHHHHhhHHHHHHhchhh---hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhh
Q psy14015 200 SHFRNLCQD----DTPMVRRAAAGKLGELAKVVEVDY---LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV 272 (318)
Q Consensus 200 ~~l~~l~~D----~~~~VR~~aa~~L~~l~~~~~~~~---~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~ 272 (318)
..|.+.++| ....-|+.+..+++.+.+ ++.+. ...+++-.+...++.+ ..|..++++-..+...++.+..
T Consensus 14 ~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l 90 (107)
T PF08064_consen 14 TRFSDVLNDLRGKKPIPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDL 90 (107)
T ss_pred HHHHHHHhccccCCCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHH
Confidence 344455566 456789999999999999 44432 3445677777777777 7999999999999999988765
Q ss_pred hHhhHH
Q psy14015 273 EQLVMP 278 (318)
Q Consensus 273 ~~~l~p 278 (318)
...+-.
T Consensus 91 ~~ll~~ 96 (107)
T PF08064_consen 91 GPLLDQ 96 (107)
T ss_pred HHHHHH
Confidence 544333
No 235
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=78.50 E-value=7.2 Score=32.14 Aligned_cols=77 Identities=17% Similarity=0.138 Sum_probs=57.9
Q ss_pred CCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhh--hHhhHHHHHHhcc
Q psy14015 208 DDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV--EQLVMPTLRQCSV 285 (318)
Q Consensus 208 D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~--~~~l~p~l~~ll~ 285 (318)
|+--++|++|..++..+...+........++..+...++| +..+|..+...+..++...+.... .+.+.+.+...|+
T Consensus 38 DDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence 6677899999999999998766555556788999999999 999999999999999876544432 2346666666664
No 236
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=78.34 E-value=27 Score=34.53 Aligned_cols=125 Identities=14% Similarity=0.047 Sum_probs=76.0
Q ss_pred HhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCccc----chhccchHH
Q psy14015 21 ELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPE----YVHCLLPPL 95 (318)
Q Consensus 21 ~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~----~~~~llp~l 95 (318)
...|-++..|..+...|......++.....-..+-+..-.+.|..+ ||..+.+.+..+.......+ +.+....-+
T Consensus 283 Ry~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rI 362 (740)
T COG5537 283 RYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRI 362 (740)
T ss_pred hccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 3456677788888888887665554443333445555556788877 99999999999987544322 233333333
Q ss_pred hh-hccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhh
Q psy14015 96 ES-LATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSA 149 (318)
Q Consensus 96 ~~-l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a 149 (318)
.. +..|-+. ||..++.++.++-...--+. .-+-++..+.=|..++.|.+.
T Consensus 363 LE~~r~D~d~-VRi~sik~l~~lr~lg~L~~---SeIlIvsscmlDi~pd~r~~~ 413 (740)
T COG5537 363 LEFLRTDSDC-VRICSIKSLCYLRILGVLSS---SEILIVSSCMLDIIPDSRENI 413 (740)
T ss_pred HHHHhhccch-hhHHHHHHHHHHHHhcccch---hHHHHHHHHHhcCCCcchHHH
Confidence 33 3445555 99999999988765432211 122334555556556655543
No 237
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=78.21 E-value=13 Score=32.85 Aligned_cols=73 Identities=15% Similarity=0.151 Sum_probs=49.4
Q ss_pred cchhccchHHhhhccCc-hhHHHHHHHHHHHHHHhhCChhHH----hhhHHHHHHHhhcCCCchhhhhhhhhhhhhcc
Q psy14015 86 EYVHCLLPPLESLATVE-ETVVRDKAVESLRLISAQHSPHDL----EAHFVPLVQRLASGDWFTSRTSACGLFSVCYP 158 (318)
Q Consensus 86 ~~~~~llp~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~~~~----~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~ 158 (318)
+..-+++|++..-.+.. -+..|-+++..++.+++.-+++.+ ...++|+..+-.+..+.-.+..|..++.+++.
T Consensus 91 ~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~ 168 (262)
T PF04078_consen 91 HIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILL 168 (262)
T ss_dssp TGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHH
T ss_pred CchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHc
Confidence 34567888887776655 488999999999999975555432 22488998887776777888888888887653
No 238
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=78.17 E-value=4.3 Score=24.01 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=25.2
Q ss_pred hHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy14015 236 DIIPMFVNLAQDEQDSVRLLAVEACVSIA 264 (318)
Q Consensus 236 ~llp~l~~ll~D~~~~VR~aa~~~l~~l~ 264 (318)
..+|.+..+++.+++.+++.++.++.+++
T Consensus 12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 12 GGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 37788888888999999999999998876
No 239
>KOG2973|consensus
Probab=77.63 E-value=7.3 Score=35.23 Aligned_cols=65 Identities=20% Similarity=0.186 Sum_probs=46.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh-hh--HhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhh
Q psy14015 199 RSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD-YL--KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASL 266 (318)
Q Consensus 199 l~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~-~~--~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~ 266 (318)
+--+..++.+.+|.||++|..++..+... |.. +. ....++.+.++++|+.. . +-++.++.++++.
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~-~-~~a~~alVnlsq~ 72 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP-A-EPAATALVNLSQK 72 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc-c-cHHHHHHHHHHhh
Confidence 34567888999999999999888777654 222 11 24588899999999988 3 3345777777753
No 240
>KOG1837|consensus
Probab=77.59 E-value=27 Score=38.35 Aligned_cols=75 Identities=17% Similarity=0.226 Sum_probs=63.5
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhh--HhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChh
Q psy14015 196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYL--KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 270 (318)
Q Consensus 196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~--~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~ 270 (318)
..+..-.+....|.+...|..|+..+..+...+|.+|. ....+|++..+++|.+..|-..+...+.++=+.+|+.
T Consensus 1540 ~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE~ 1616 (1621)
T KOG1837|consen 1540 KPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGEP 1616 (1621)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchh
Confidence 34444455666799999999999999999999998864 5689999999999999999999999888888888873
No 241
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=77.51 E-value=34 Score=27.21 Aligned_cols=76 Identities=13% Similarity=0.029 Sum_probs=56.9
Q ss_pred HHHHHHHHHhhc-CCCHHHHHHHHHhhHHHHHHhchh----hhHhhHHHH-HHHhhcC---CcHHHHHHHHHHHHHHHhh
Q psy14015 196 AELRSHFRNLCQ-DDTPMVRRAAAGKLGELAKVVEVD----YLKTDIIPM-FVNLAQD---EQDSVRLLAVEACVSIASL 266 (318)
Q Consensus 196 ~~ll~~l~~l~~-D~~~~VR~~aa~~L~~l~~~~~~~----~~~~~llp~-l~~ll~D---~~~~VR~aa~~~l~~l~~~ 266 (318)
++.+..+.+-++ ..++.|-..|..-|-.+.+++|.. ....+++.- +.+++.+ +...|+..++..+.+.+..
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 567777777666 578988888888888899988854 223456654 6666653 5568999999999999998
Q ss_pred CChhh
Q psy14015 267 LSQSD 271 (318)
Q Consensus 267 l~~~~ 271 (318)
|..+.
T Consensus 117 f~~~~ 121 (141)
T cd03565 117 FRGSP 121 (141)
T ss_pred hCCCc
Confidence 86553
No 242
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=77.30 E-value=7.2 Score=30.15 Aligned_cols=65 Identities=8% Similarity=0.072 Sum_probs=42.3
Q ss_pred HHHHHHHhh-cCCcHHHHHHHHHHHHHHHhhCCh--hhhhH-hhHHHHHHhccccccccccCCCCCCchhhHHhhhhhh
Q psy14015 237 IIPMFVNLA-QDEQDSVRLLAVEACVSIASLLSQ--SDVEQ-LVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISATTL 311 (318)
Q Consensus 237 llp~l~~ll-~D~~~~VR~aa~~~l~~l~~~l~~--~~~~~-~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~~~ 311 (318)
++-.+.+++ +..++.+-..|+.-|+.+....+. ....+ -.-..++.++++ ++++||.++..++..
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h----------~d~eVr~eAL~avQk 112 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNH----------EDPEVRYEALLAVQK 112 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-----------SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcC----------CCHHHHHHHHHHHHH
Confidence 444455555 233556667777788888876633 22222 366789999999 999999999987653
No 243
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=76.99 E-value=35 Score=27.10 Aligned_cols=75 Identities=13% Similarity=-0.000 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh----hhHhhHHHHHHHhhcC------CcHHHHHHHHHHHHHHHh
Q psy14015 196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD----YLKTDIIPMFVNLAQD------EQDSVRLLAVEACVSIAS 265 (318)
Q Consensus 196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~----~~~~~llp~l~~ll~D------~~~~VR~aa~~~l~~l~~ 265 (318)
.+.+..+.+-+++++++|-..|..-|-.+.+++|.. ....+++.-+.++..+ +...||..++..+...+.
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 566788888899999999999999999999998864 2234566666666653 678999999999999998
Q ss_pred hCChh
Q psy14015 266 LLSQS 270 (318)
Q Consensus 266 ~l~~~ 270 (318)
.|++.
T Consensus 117 ~f~~~ 121 (139)
T cd03567 117 ELPHE 121 (139)
T ss_pred Hhccc
Confidence 88653
No 244
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=76.72 E-value=67 Score=30.14 Aligned_cols=70 Identities=13% Similarity=0.101 Sum_probs=45.9
Q ss_pred chHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHH
Q psy14015 194 VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSI 263 (318)
Q Consensus 194 ~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l 263 (318)
....++..+....++++...|..|...+.+++-.-..=.+...-+..+.+.+.|+...+-.+++.++-.+
T Consensus 105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~l 174 (371)
T PF14664_consen 105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYL 174 (371)
T ss_pred CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHH
Confidence 4467888999999999999999999999999864322112223445555666666555444444443333
No 245
>KOG0803|consensus
Probab=76.56 E-value=97 Score=34.05 Aligned_cols=264 Identities=16% Similarity=0.163 Sum_probs=137.3
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHh---hchhhhhhhhcCChHH-HHHHHHHHHcccccCcCc--ccch
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTR---GELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG--PEYV 88 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~---~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~--~~~~ 88 (318)
....++.|...|+..+..+..-|.++......+... .+..-.+.+++.|.+. ||...-..+..+...++. ..+.
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~L 122 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFL 122 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 455567788899999999999999987654333222 2223344567777776 999988888877654443 2345
Q ss_pred hccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhH----HhhhHHHHHHHhh--cCCC--chhhhhhhhhhhhhcccc
Q psy14015 89 HCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHD----LEAHFVPLVQRLA--SGDW--FTSRTSACGLFSVCYPRV 160 (318)
Q Consensus 89 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~----~~~~ilp~~~~l~--~d~~--~~vR~~a~~~l~~~~~~~ 160 (318)
+.++|.......|.+..|-.+|-.++......-.... ....+.+++.+.+ +++. ...|..+-+-+..-+.++
T Consensus 123 K~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rv 202 (1312)
T KOG0803|consen 123 KSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRV 202 (1312)
T ss_pred HhhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHH
Confidence 5577777777788888888887777766654111111 2223444444331 1111 111222211111111110
Q ss_pred CcchHHHHHHHHHhhccCCCcccccchhhcCccch-HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh---hhHhh
Q psy14015 161 TAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVK-AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD---YLKTD 236 (318)
Q Consensus 161 ~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~-~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~---~~~~~ 236 (318)
-...-..+...+...+... ++..+.+..+ --....|-++++++++.+|.+....+..+.+.+..- .....
T Consensus 203 i~ssLl~l~~l~~~~~~~~------el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~ 276 (1312)
T KOG0803|consen 203 ISSSLLLLLKLFKITGDEE------ELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNY 276 (1312)
T ss_pred HHHHHHHHHHHHHHhCchH------hhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhH
Confidence 0000001111111111100 0000000000 112356778899999999999988888888754321 12345
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhh------hhHhhHHHHHHhcc
Q psy14015 237 IIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD------VEQLVMPTLRQCSV 285 (318)
Q Consensus 237 llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~------~~~~l~p~l~~ll~ 285 (318)
+.|++.....+.+ .|=...-+++-.+...+..+- ...-+.|.+..++.
T Consensus 277 l~~~~~~~~~~~d-~~c~~~we~Vl~~~~~~p~~~~~~~~~~~k~il~~l~~~ir 330 (1312)
T KOG0803|consen 277 LKPVLLGSIDSLD-HVCSSMWEKVLLNLSSLPDEWLHLNSLLKKGILPLLSNLIR 330 (1312)
T ss_pred hhHHHHccccccc-cccHHHHHHHHHHhhhhhHHHhcccchhccchhHHHHHHHh
Confidence 7777777766665 333333333332233333331 23347777777776
No 246
>KOG2549|consensus
Probab=76.47 E-value=15 Score=35.81 Aligned_cols=134 Identities=19% Similarity=0.214 Sum_probs=79.0
Q ss_pred HHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH---HH--HHHHHHHcccccC-cCc-----c
Q psy14015 17 VLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE---VL--LALAEQLGTFTPN-VGG-----P 85 (318)
Q Consensus 17 ~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~---VR--~~aa~~L~~l~~~-~~~-----~ 85 (318)
+..+.+-+.+...|.+++..|..= -| ...|+|++..++.+.-. +. ......|.+++.. +.. +
T Consensus 211 ~It~a~~g~~~~~r~eAL~sL~TD---sG----L~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~le 283 (576)
T KOG2549|consen 211 EITEACTGSDEPLRQEALQSLETD---SG----LQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLE 283 (576)
T ss_pred HHHHHHhcCCHHHHHHHHHhhccC---cc----HHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchh
Confidence 345666678888888888877652 23 35688888877765322 11 1112222222221 111 2
Q ss_pred cchhccchHHhhhc----------cCchhHHHHHHHHHHHHHHhhCChhH--HhhhHHHHHHHhhcCC--Cchhhhhhhh
Q psy14015 86 EYVHCLLPPLESLA----------TVEETVVRDKAVESLRLISAQHSPHD--LEAHFVPLVQRLASGD--WFTSRTSACG 151 (318)
Q Consensus 86 ~~~~~llp~l~~l~----------~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~ilp~~~~l~~d~--~~~vR~~a~~ 151 (318)
.+...++|-+..++ .|+.+.+|..|+..+..++..++... ....+...+.+.+-|. .|...|.++.
T Consensus 284 pYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~ 363 (576)
T KOG2549|consen 284 PYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIA 363 (576)
T ss_pred hHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHH
Confidence 23445666544332 45568899999999999998886632 2333555555555553 5888898877
Q ss_pred hhhhhc
Q psy14015 152 LFSVCY 157 (318)
Q Consensus 152 ~l~~~~ 157 (318)
.|..+.
T Consensus 364 gL~~lg 369 (576)
T KOG2549|consen 364 GLSELG 369 (576)
T ss_pred HHHHhh
Confidence 766543
No 247
>KOG2153|consensus
Probab=76.23 E-value=89 Score=31.32 Aligned_cols=67 Identities=15% Similarity=0.216 Sum_probs=50.7
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHh
Q psy14015 198 LRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIAS 265 (318)
Q Consensus 198 ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~ 265 (318)
++-++...++++--.+=.++...++.++..+-.+. ..+++-++.+++.|.+-.+|.+..+.-+.|+-
T Consensus 461 VFtiYFrILkn~~~tll~~vlEGlakf~h~invef-~~dll~vlk~ll~d~~~~~re~l~cvqtaf~I 527 (704)
T KOG2153|consen 461 VFTIYFRILKNDRYTLLGAVLEGLAKFAHLINVEF-LGDLLKVLKELLEDIELSYREALLCVQTAFCI 527 (704)
T ss_pred HHHHHHHHHhcchhhHHHHHHhhHHHHhhhccHHH-hhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 44555666776665567788888888888776664 47889999999999988899888776665553
No 248
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=75.80 E-value=37 Score=27.04 Aligned_cols=77 Identities=12% Similarity=0.104 Sum_probs=51.3
Q ss_pred HHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhc-C
Q psy14015 130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ-D 208 (318)
Q Consensus 130 ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~-D 208 (318)
.+-.+.+-++..+..+-..|..++..+....+..+..++ ..+.++..+.+++. .
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~ev-------------------------as~~fl~~l~~l~~~~ 96 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEV-------------------------ASREFMDELKDLIKTT 96 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHH-------------------------hhHHHHHHHHHHHccc
Confidence 333444444556677777777777766665554443333 23566677777776 4
Q ss_pred CCHHHHHHHHHhhHHHHHHhchh
Q psy14015 209 DTPMVRRAAAGKLGELAKVVEVD 231 (318)
Q Consensus 209 ~~~~VR~~aa~~L~~l~~~~~~~ 231 (318)
..+.||.-+...+...+..++.+
T Consensus 97 ~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 97 KNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCC
Confidence 66899999999999999887654
No 249
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=75.57 E-value=37 Score=26.63 Aligned_cols=76 Identities=13% Similarity=0.128 Sum_probs=61.3
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh----hHhhHHHHHHHhhcCCcH--HHHHHHHHHHHHHHhhCC
Q psy14015 195 KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY----LKTDIIPMFVNLAQDEQD--SVRLLAVEACVSIASLLS 268 (318)
Q Consensus 195 ~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~----~~~~llp~l~~ll~D~~~--~VR~aa~~~l~~l~~~l~ 268 (318)
-++.+..+.+-++++++.|-..|..-|..+..++|... ....++..+.++++++.. .||..+...+...+..|.
T Consensus 35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 36778889999999999999999999999999988642 234577778888877643 499999999999998885
Q ss_pred hh
Q psy14015 269 QS 270 (318)
Q Consensus 269 ~~ 270 (318)
.+
T Consensus 115 ~~ 116 (133)
T smart00288 115 ND 116 (133)
T ss_pred CC
Confidence 43
No 250
>KOG2011|consensus
Probab=75.34 E-value=32 Score=36.48 Aligned_cols=61 Identities=11% Similarity=0.041 Sum_probs=52.7
Q ss_pred ccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccc
Q psy14015 99 ATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPR 159 (318)
Q Consensus 99 ~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~ 159 (318)
-.|-++.||..+++.|+.-...++.-.....++-++-=.++|.+-.||..+...|..++..
T Consensus 296 YRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~ 356 (1048)
T KOG2011|consen 296 YRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEK 356 (1048)
T ss_pred cccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhc
Confidence 3788899999999999999999988777777777777678999999999999998887765
No 251
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=75.27 E-value=38 Score=26.55 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=60.7
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh---h-HhhHHHHHHHhhcC---CcHHHHHHHHHHHHHHHhhC
Q psy14015 195 KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY---L-KTDIIPMFVNLAQD---EQDSVRLLAVEACVSIASLL 267 (318)
Q Consensus 195 ~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~---~-~~~llp~l~~ll~D---~~~~VR~aa~~~l~~l~~~l 267 (318)
-++.+..+.+-++.+++.|...|..-|-.+..++|... + ..+.+.-+.+++.. .+..||..+.+.+...+..|
T Consensus 35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 36778899999999999999999999999999988632 1 22444456677765 47799999999999999988
Q ss_pred Chh
Q psy14015 268 SQS 270 (318)
Q Consensus 268 ~~~ 270 (318)
+..
T Consensus 115 ~~~ 117 (133)
T cd03561 115 GGH 117 (133)
T ss_pred cCC
Confidence 764
No 252
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=74.87 E-value=34 Score=26.83 Aligned_cols=76 Identities=16% Similarity=0.196 Sum_probs=51.4
Q ss_pred HHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCC
Q psy14015 130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDD 209 (318)
Q Consensus 130 ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~ 209 (318)
.+..+.+-++.++..+-..|..++..+....+..+..++ ..+.++..+.++..+.
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev-------------------------~s~~fl~~L~~l~~~~ 92 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEV-------------------------ASKEFLNELVKLIKPK 92 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHH-------------------------HhHHHHHHHHHHHcCC
Confidence 444555555667777777777777766666555444443 2355667777777764
Q ss_pred C--HHHHHHHHHhhHHHHHHhch
Q psy14015 210 T--PMVRRAAAGKLGELAKVVEV 230 (318)
Q Consensus 210 ~--~~VR~~aa~~L~~l~~~~~~ 230 (318)
. +.||.-+...+...+..+..
T Consensus 93 ~~~~~Vk~kil~li~~W~~~f~~ 115 (133)
T smart00288 93 YPLPLVKKRILELIQEWADAFKN 115 (133)
T ss_pred CCcHHHHHHHHHHHHHHHHHHcC
Confidence 3 44999999999999988754
No 253
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=74.61 E-value=39 Score=26.44 Aligned_cols=77 Identities=9% Similarity=0.026 Sum_probs=53.4
Q ss_pred HHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcC-
Q psy14015 130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQD- 208 (318)
Q Consensus 130 ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D- 208 (318)
.+..+.+-++.++..+...|..++..+....+..+..++ ..++.+.-+.+++..
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i-------------------------~s~~fl~~l~~l~~~~ 92 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQV-------------------------ADKEFLLELVKIAKNS 92 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHH-------------------------hhHHHHHHHHHHhCCC
Confidence 455566666777888888888888877777665554443 112333336666654
Q ss_pred --CCHHHHHHHHHhhHHHHHHhchh
Q psy14015 209 --DTPMVRRAAAGKLGELAKVVEVD 231 (318)
Q Consensus 209 --~~~~VR~~aa~~L~~l~~~~~~~ 231 (318)
.+..||.-+..-+...+..++.+
T Consensus 93 ~~~~~~Vk~kil~ll~~W~~~f~~~ 117 (133)
T cd03561 93 PKYDPKVREKALELILAWSESFGGH 117 (133)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 46899999999999999888753
No 254
>KOG1048|consensus
Probab=74.46 E-value=81 Score=32.13 Aligned_cols=95 Identities=17% Similarity=0.158 Sum_probs=71.6
Q ss_pred chHHHHHHHHHhhcC-CCHHHHHHHHHhhHHHHHHhch-------hh-hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy14015 194 VKAELRSHFRNLCQD-DTPMVRRAAAGKLGELAKVVEV-------DY-LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIA 264 (318)
Q Consensus 194 ~~~~ll~~l~~l~~D-~~~~VR~~aa~~L~~l~~~~~~-------~~-~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~ 264 (318)
+...++..+..+++. .++.+=++++.+|..+...-+. .. ..+..+|.+..|+.-++..|=++++.++.+++
T Consensus 515 w~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls 594 (717)
T KOG1048|consen 515 WHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLS 594 (717)
T ss_pred ecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhc
Confidence 567888887777764 4588888888888887754321 11 24567899999999888888888999999999
Q ss_pred hhCC-hhhhhHhhHHHHHHhccccc
Q psy14015 265 SLLS-QSDVEQLVMPTLRQCSVQIV 288 (318)
Q Consensus 265 ~~l~-~~~~~~~l~p~l~~ll~D~~ 288 (318)
.... ++-...+.+|-|..+|.+.+
T Consensus 595 ~d~rnk~ligk~a~~~lv~~Lp~~~ 619 (717)
T KOG1048|consen 595 RDIRNKELIGKYAIPDLVRCLPGSG 619 (717)
T ss_pred cCchhhhhhhcchHHHHHHhCcCCC
Confidence 6553 34445678999999999844
No 255
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=74.19 E-value=15 Score=29.32 Aligned_cols=83 Identities=18% Similarity=0.125 Sum_probs=53.9
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCCh----h
Q psy14015 195 KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ----S 270 (318)
Q Consensus 195 ~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~----~ 270 (318)
.+++...+..++.+++++|.+.|.+|+...-. +. ....-.-+.+++.|.. .|.. +..+...-+. +
T Consensus 15 ~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~----~~-l~pY~d~L~~Lldd~~--frde----L~~f~~~~~~~~I~~ 83 (141)
T PF07539_consen 15 SDELYDALLRLLSSRDPEVQKLALDCLLTWKD----PY-LTPYKDNLENLLDDKT--FRDE----LTTFNLSDESSVIEE 83 (141)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----HH-HHhHHHHHHHHcCcch--HHHH----HHhhcccCCcCCCCH
Confidence 36788899999999999999999999988754 11 1223345667777763 3333 3333322211 2
Q ss_pred hhhHhhHHHHHHhccccc
Q psy14015 271 DVEQLVMPTLRQCSVQIV 288 (318)
Q Consensus 271 ~~~~~l~p~l~~ll~D~~ 288 (318)
.....++|.++++|--..
T Consensus 84 ehR~~l~pvvlRILygk~ 101 (141)
T PF07539_consen 84 EHRPELMPVVLRILYGKM 101 (141)
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 334569999998876543
No 256
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=72.36 E-value=78 Score=28.87 Aligned_cols=171 Identities=14% Similarity=0.065 Sum_probs=101.9
Q ss_pred HHHHHHHhHHHHHHhhChHhHhhch---hhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhh---ccC
Q psy14015 29 LRLNSIKKLSTIALALGQERTRGEL---IPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESL---ATV 101 (318)
Q Consensus 29 ~R~~~~~~L~~ia~~lg~~~~~~~l---lp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l---~~d 101 (318)
|=+.+.+....|-..+|++....++ .|.+-.+.....- ||-.....+.+.---+|. .....+-+++..+ +.|
T Consensus 71 VH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~p~l~~li~slLpGLed 149 (307)
T PF04118_consen 71 VHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALRPCLKGLILSLLPGLED 149 (307)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhcccccc
Confidence 4445555555555667877655543 4455555555555 888888777766544554 3333344444444 467
Q ss_pred chhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcc----hHHHHHHHHHhhcc
Q psy14015 102 EETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG----VKAELRSHFRNLCQ 177 (318)
Q Consensus 102 ~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~----~~~~l~~~~~~l~~ 177 (318)
+..++-+.+...+..+...++.+.+.+.+.-. +.+ ++..|..|...+.+-.+..... ...+. ..+
T Consensus 150 e~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~---ii~--sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~----~~~-- 218 (307)
T PF04118_consen 150 EGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLC---IIT--SPSRRLGALNYLLRRLPKFQNDELSLSSEEQ----EYC-- 218 (307)
T ss_pred CCchHHHHHHHHHHHHHHhcChhHHHHHHHHH---Hhc--CcchhHHHHHHHHHhCCcccccccccchHHH----HHh--
Confidence 78889999999999999888887544443333 334 3468888766655433332210 00000 000
Q ss_pred CCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHH
Q psy14015 178 DDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGEL 224 (318)
Q Consensus 178 ~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l 224 (318)
.+ ....-++..+...++|++-.|++.+..-|-.-
T Consensus 219 -~~------------~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~ 252 (307)
T PF04118_consen 219 -LG------------PDPGLLVRALCACLEDENILVQRGFLDLLLSH 252 (307)
T ss_pred -cC------------CCccHHHHHHHHHhCCchHHHHHHHHHHHHHh
Confidence 00 12245788999999999999999887765543
No 257
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=72.25 E-value=95 Score=29.83 Aligned_cols=78 Identities=15% Similarity=0.207 Sum_probs=52.7
Q ss_pred hHH-HHHHHHHHHcccccCcCc--ccchhccchHHhhhccCc-hhHHHHHHHHHHHHHHhhCCh---h---HHhhhHHHH
Q psy14015 64 EDE-VLLALAEQLGTFTPNVGG--PEYVHCLLPPLESLATVE-ETVVRDKAVESLRLISAQHSP---H---DLEAHFVPL 133 (318)
Q Consensus 64 ~~~-VR~~aa~~L~~l~~~~~~--~~~~~~llp~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~---~---~~~~~ilp~ 133 (318)
++| +.+++.+.+..+.+.+.. ....+.+..++...++++ ++.--....++++.+...... + .+.+.++|.
T Consensus 42 ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~ 121 (435)
T PF03378_consen 42 ENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPP 121 (435)
T ss_dssp C-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHH
Confidence 556 889999998876554432 234455666777777776 577778888888888887553 2 466779999
Q ss_pred HHHhhcCC
Q psy14015 134 VQRLASGD 141 (318)
Q Consensus 134 ~~~l~~d~ 141 (318)
+...++.+
T Consensus 122 f~~ILq~d 129 (435)
T PF03378_consen 122 FQEILQQD 129 (435)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 98876654
No 258
>KOG0889|consensus
Probab=72.09 E-value=50 Score=39.46 Aligned_cols=73 Identities=12% Similarity=0.168 Sum_probs=55.3
Q ss_pred hccchHHhhhccCchhHHHHHHHHHHHHHHhhC----C-hh-----HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhcc
Q psy14015 89 HCLLPPLESLATVEETVVRDKAVESLRLISAQH----S-PH-----DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYP 158 (318)
Q Consensus 89 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~----~-~~-----~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~ 158 (318)
..+++.+..-++.++..++..+..++..+.... + ++ -+...+++.+.++|.|+-|..|.+.+-.++.++.
T Consensus 983 ~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen 983 STFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred HHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence 446777877788888999999988888876643 2 11 2445688888899999999999988777776666
Q ss_pred ccC
Q psy14015 159 RVT 161 (318)
Q Consensus 159 ~~~ 161 (318)
.++
T Consensus 1063 ~~~ 1065 (3550)
T KOG0889|consen 1063 SMP 1065 (3550)
T ss_pred hch
Confidence 655
No 259
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=72.06 E-value=11 Score=37.38 Aligned_cols=70 Identities=20% Similarity=0.164 Sum_probs=52.7
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHhhHHHHHHhchhh----hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCC
Q psy14015 199 RSHFRNLC-QDDTPMVRRAAAGKLGELAKVVEVDY----LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLS 268 (318)
Q Consensus 199 l~~l~~l~-~D~~~~VR~~aa~~L~~l~~~~~~~~----~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~ 268 (318)
+-.+.+++ ..+...||-+++.=++.+++.+-++. +...+.-.|..++.|.+|.++..|.++++.+++.-+
T Consensus 481 ~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T~ 555 (559)
T PF14868_consen 481 LTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERTS 555 (559)
T ss_pred HHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccCC
Confidence 33334444 35556699999999999998765543 344556677788999999999999999999997643
No 260
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=69.02 E-value=2.2e+02 Score=32.69 Aligned_cols=106 Identities=15% Similarity=0.205 Sum_probs=56.4
Q ss_pred CCCchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHh--HhhchhhhhhhhcCChHH-HHHHHHHHHccccc-CcC--
Q psy14015 10 DSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQER--TRGELIPFLTETIYDEDE-VLLALAEQLGTFTP-NVG-- 83 (318)
Q Consensus 10 ~~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~--~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~-~~~-- 83 (318)
+-|.|+..++. ++.+..+|-..++-+..+-...+..- -|+.++..+.....++.+ +-..+-+.+..+.. .++
T Consensus 1182 efLkPfe~im~--~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l 1259 (1780)
T PLN03076 1182 EFMKPFVIVMR--KSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYI 1259 (1780)
T ss_pred HHHHHHHHHHH--hcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhc
Confidence 46778888777 45666888888888887754433221 266777777766666554 32333444444332 111
Q ss_pred -c--ccchhccchHHhhhccCc-hhHHHHHHHHHHHHH
Q psy14015 84 -G--PEYVHCLLPPLESLATVE-ETVVRDKAVESLRLI 117 (318)
Q Consensus 84 -~--~~~~~~llp~l~~l~~d~-~~~VR~~a~~~l~~l 117 (318)
. ......++..+..+.+.. +.++-..|++.+-.+
T Consensus 1260 ~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~ 1297 (1780)
T PLN03076 1260 TETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFC 1297 (1780)
T ss_pred cccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHH
Confidence 0 122333444555554322 244444555554443
No 261
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=68.85 E-value=48 Score=25.06 Aligned_cols=74 Identities=16% Similarity=0.209 Sum_probs=53.3
Q ss_pred HHHHHHhhcCCC----HHHHHHHHHhhHHHHHHhchh--hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhh
Q psy14015 199 RSHFRNLCQDDT----PMVRRAAAGKLGELAKVVEVD--YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV 272 (318)
Q Consensus 199 l~~l~~l~~D~~----~~VR~~aa~~L~~l~~~~~~~--~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~ 272 (318)
+..|.+.++|.+ ..-|+.+..+++.+....|+. .....++-.+...++.| +.|..+.++-..+...++.+..
T Consensus 13 l~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~--eL~~~al~~W~~~i~~L~~~~l 90 (107)
T smart00802 13 LAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIP--ELRSLALRCWHVLIKTLKEEEL 90 (107)
T ss_pred HHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHHHhCCHHHH
Confidence 344455566655 245899999999999977743 22345666777777755 4999999999999999988664
Q ss_pred hH
Q psy14015 273 EQ 274 (318)
Q Consensus 273 ~~ 274 (318)
..
T Consensus 91 ~~ 92 (107)
T smart00802 91 GP 92 (107)
T ss_pred HH
Confidence 43
No 262
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=68.39 E-value=57 Score=25.74 Aligned_cols=77 Identities=13% Similarity=0.078 Sum_probs=51.4
Q ss_pred HHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCC
Q psy14015 130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDD 209 (318)
Q Consensus 130 ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~ 209 (318)
.+..+.+-++..++.+...|..++..+....+..+..++ ....++..+.+++.+.
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev-------------------------~~~~fl~~l~~l~~~~ 97 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREV-------------------------ASKEFLDELVKLIKSK 97 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHH-------------------------TSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHH-------------------------hHHHHHHHHHHHHccC
Confidence 455565555667777777787777766655554444333 3355677777766643
Q ss_pred C-HH---HHHHHHHhhHHHHHHhchh
Q psy14015 210 T-PM---VRRAAAGKLGELAKVVEVD 231 (318)
Q Consensus 210 ~-~~---VR~~aa~~L~~l~~~~~~~ 231 (318)
. .. ||.-+...+..++..++.+
T Consensus 98 ~~~~~~~Vk~k~l~ll~~W~~~f~~~ 123 (140)
T PF00790_consen 98 KTDPETPVKEKILELLQEWAEAFKSD 123 (140)
T ss_dssp TTHHHSHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCchhHHHHHHHHHHHHHHHHHCCC
Confidence 3 33 9999999999999988543
No 263
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=66.22 E-value=12 Score=30.44 Aligned_cols=128 Identities=18% Similarity=0.068 Sum_probs=69.1
Q ss_pred HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh---hH-HhhhHHHHHHHhhc--C
Q psy14015 67 VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP---HD-LEAHFVPLVQRLAS--G 140 (318)
Q Consensus 67 VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~-~~~~ilp~~~~l~~--d 140 (318)
+|..+.-.+.++.+. .+..+.+.+-..+..++.+.+.+-...++.++..+....+. +- ..+-+++.+..++. .
T Consensus 21 ~r~~a~v~l~k~l~~-~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~ 99 (157)
T PF11701_consen 21 VRSHALVILSKLLDA-AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKS 99 (157)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CT
T ss_pred HHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhccc
Confidence 666666666555321 12345555667777777666655555666666666554332 10 11225555555555 4
Q ss_pred CCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhc-CCCHH-HHHHHH
Q psy14015 141 DWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ-DDTPM-VRRAAA 218 (318)
Q Consensus 141 ~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~-D~~~~-VR~~aa 218 (318)
++..+...+++++...+ ....+.. ...++-.+.+.++.+ +++.. +|--|+
T Consensus 100 ~~~~~~~~~lell~aAc---~d~~~r~-------------------------~I~~~~~~~L~~~~~~~~~~~~ir~~A~ 151 (157)
T PF11701_consen 100 KDRKVQKAALELLSAAC---IDKSCRT-------------------------FISKNYVSWLKELYKNSKDDSEIRVLAA 151 (157)
T ss_dssp S-HHHHHHHHHHHHHHT---TSHHHHH-------------------------CCHHHCHHHHHHHTTTCC-HH-CHHHHH
T ss_pred CCHHHHHHHHHHHHHHH---ccHHHHH-------------------------HHHHHHHHHHHHHHccccchHHHHHHHH
Confidence 44555556666554322 1111111 245677888888884 55565 777777
Q ss_pred HhhHH
Q psy14015 219 GKLGE 223 (318)
Q Consensus 219 ~~L~~ 223 (318)
-.|.+
T Consensus 152 v~L~K 156 (157)
T PF11701_consen 152 VGLCK 156 (157)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66654
No 264
>KOG2199|consensus
Probab=65.86 E-value=96 Score=29.17 Aligned_cols=88 Identities=9% Similarity=0.013 Sum_probs=67.7
Q ss_pred chHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhh----HhhHHHHHHHhhc-CCcHHHHHHHHHHHHHHHhhCC
Q psy14015 194 VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYL----KTDIIPMFVNLAQ-DEQDSVRLLAVEACVSIASLLS 268 (318)
Q Consensus 194 ~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~----~~~llp~l~~ll~-D~~~~VR~aa~~~l~~l~~~l~ 268 (318)
..++-+..+.+-++..+++|-..|+.-++.+..++|.... ...+..-|..+++ .....|+......+.++++.|.
T Consensus 42 ~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K 121 (462)
T KOG2199|consen 42 GGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFK 121 (462)
T ss_pred ccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhc
Confidence 4467788899999999999999999999999999986432 3346667778888 6678899998888999998776
Q ss_pred hhhhhHhhHHHHHH
Q psy14015 269 QSDVEQLVMPTLRQ 282 (318)
Q Consensus 269 ~~~~~~~l~p~l~~ 282 (318)
++.... +++.+..
T Consensus 122 ~Dp~ls-Li~~l~~ 134 (462)
T KOG2199|consen 122 KDPSLS-LISALYK 134 (462)
T ss_pred cCcchh-HHHHHHH
Confidence 665444 4444443
No 265
>KOG1851|consensus
Probab=65.12 E-value=35 Score=37.56 Aligned_cols=71 Identities=23% Similarity=0.244 Sum_probs=53.6
Q ss_pred hHHHHHHHHHhhcC-CCHHHHHHHHHhhHHHH--HHhc-hhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHh
Q psy14015 195 KAELRSHFRNLCQD-DTPMVRRAAAGKLGELA--KVVE-VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIAS 265 (318)
Q Consensus 195 ~~~ll~~l~~l~~D-~~~~VR~~aa~~L~~l~--~~~~-~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~ 265 (318)
..+++..|.++..| ..|+||.++..-+..+. +.++ .+...+++--.+..+++|.+-+||..++.++..+..
T Consensus 1524 ~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~ 1598 (1710)
T KOG1851|consen 1524 QPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQ 1598 (1710)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHh
Confidence 34566666655555 56999999888777665 3444 444567888999999999999999999999888764
No 266
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=62.98 E-value=1.2e+02 Score=27.97 Aligned_cols=106 Identities=11% Similarity=0.091 Sum_probs=65.9
Q ss_pred ccCchhHHHHHHHHHHHHHHhhCCh---hHH---hhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCc-chHHHHHHH
Q psy14015 99 ATVEETVVRDKAVESLRLISAQHSP---HDL---EAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA-GVKAELRSH 171 (318)
Q Consensus 99 ~~d~~~~VR~~a~~~l~~l~~~~~~---~~~---~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~-~~~~~l~~~ 171 (318)
...++=+|-.-|..++..+...... +.. .+.+...+.+|+.++++-.|.-+..+||.++..-+. .+.
T Consensus 173 ~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm------ 246 (335)
T PF08569_consen 173 VQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVM------ 246 (335)
T ss_dssp TTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHH------
T ss_pred hcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHH------
Confidence 3444456666677777776654322 111 122555777888999999999999999987532221 111
Q ss_pred HHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHh
Q psy14015 172 FRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVV 228 (318)
Q Consensus 172 ~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~ 228 (318)
... ....+-+..+..++.|++..+|.-|..-|-.+..+-
T Consensus 247 -~~y-----------------i~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 247 -TRY-----------------ISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp -HHH-----------------TT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred -HHH-----------------HCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 111 133567888999999999999999988888887753
No 267
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=60.88 E-value=23 Score=27.53 Aligned_cols=37 Identities=14% Similarity=0.110 Sum_probs=29.5
Q ss_pred hhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh
Q psy14015 88 VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH 124 (318)
Q Consensus 88 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~ 124 (318)
...++..|..-+++.+..|+.+++..|..++...+++
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~ 72 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD 72 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH
Confidence 4457777777778888999999999999999887754
No 268
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=60.75 E-value=1.2e+02 Score=26.76 Aligned_cols=29 Identities=28% Similarity=0.277 Sum_probs=23.2
Q ss_pred HHHHHHhhcCCC--HHHHHHHHHhhHHHHHH
Q psy14015 199 RSHFRNLCQDDT--PMVRRAAAGKLGELAKV 227 (318)
Q Consensus 199 l~~l~~l~~D~~--~~VR~~aa~~L~~l~~~ 227 (318)
++.+.++++|+. .-||.+|..+|..++..
T Consensus 113 ~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~ 143 (249)
T PF06685_consen 113 IEPLKELIEDPDADEYVRMAAISALAFLVHE 143 (249)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHc
Confidence 466777788876 56999999999988863
No 269
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=60.28 E-value=37 Score=24.64 Aligned_cols=51 Identities=14% Similarity=0.206 Sum_probs=24.2
Q ss_pred chHHhhhccCch--hHHHHHHHHHHHHHHhhC-ChhHHhhhHHHHHHHhhcCCC
Q psy14015 92 LPPLESLATVEE--TVVRDKAVESLRLISAQH-SPHDLEAHFVPLVQRLASGDW 142 (318)
Q Consensus 92 lp~l~~l~~d~~--~~VR~~a~~~l~~l~~~~-~~~~~~~~ilp~~~~l~~d~~ 142 (318)
+.+|.++..|+. ..||.+|-++.-.+.+.- ++.......+.++.+..+||+
T Consensus 19 ~~lL~~Ii~DttVPRNIRraA~~a~e~L~~e~e~p~vRaAtaIsiLeeisnDPN 72 (93)
T COG1698 19 MQLLDEIIQDTTVPRNIRRAAEEAKEALNNEGESPAVRAATAISILEEISNDPN 72 (93)
T ss_pred HHHHHHHHccccccHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCC
Confidence 334444444442 455555555555554421 222222335555566667765
No 270
>KOG4524|consensus
Probab=59.96 E-value=43 Score=35.02 Aligned_cols=98 Identities=15% Similarity=0.169 Sum_probs=62.9
Q ss_pred hhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhc
Q psy14015 128 AHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ 207 (318)
Q Consensus 128 ~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~ 207 (318)
..|+....+++.+++-++|..|...|..+..-+... . +.+-.+. ....|.++.-+.
T Consensus 802 ~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~-~----n~LlPlv-------------------hq~W~~vie~~~ 857 (1014)
T KOG4524|consen 802 LKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATY-H----NLLLPLV-------------------HQTWPSVIECLL 857 (1014)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhcc-c----hhHhHHH-------------------HhhhhHHHHHHh
Confidence 346666777889999999988888776544333211 0 0011111 223456666677
Q ss_pred CCCHHHHHHHHHhhHHHHHHhc---hhhhHhhHHHHHHHhhcCCc
Q psy14015 208 DDTPMVRRAAAGKLGELAKVVE---VDYLKTDIIPMFVNLAQDEQ 249 (318)
Q Consensus 208 D~~~~VR~~aa~~L~~l~~~~~---~~~~~~~llp~l~~ll~D~~ 249 (318)
+.++.+=..|..++..++...| ...+.++++|.++++++|..
T Consensus 858 ~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~dvlP~l~~~~~~~~ 902 (1014)
T KOG4524|consen 858 CKDPLIVQRAFSCIEQMGKYSGDFVASRFLEDVLPWLKHLCQDSF 902 (1014)
T ss_pred cCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766666666666665544 45677899999999998876
No 271
>KOG2005|consensus
Probab=59.95 E-value=1.3e+02 Score=30.55 Aligned_cols=245 Identities=18% Similarity=0.184 Sum_probs=125.1
Q ss_pred CCCch-HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChH-HHHHHHHHHHcccccCcCc--c
Q psy14015 10 DSLYP-IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAEQLGTFTPNVGG--P 85 (318)
Q Consensus 10 ~~l~~-i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~-~VR~~aa~~L~~l~~~~~~--~ 85 (318)
+.-+| ++-+-+++++++...|..+|-.|+..=+--..+.....|.|.+.. .+.+ +|-.-++-.|+.+ ++|. .
T Consensus 448 ne~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e~V~~lL~Pi~~d--~~~~~ev~~~aslsLG~I--fvGscn~ 523 (878)
T KOG2005|consen 448 NECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQREEVLELLSPIMFD--TKSPMEVVAFASLSLGMI--FVGSCNE 523 (878)
T ss_pred cccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchHHHHHHHhHHhcC--CCCchhHHHHHHhhccee--EEecCCh
Confidence 34455 455668999999999999999988752212233344455554421 1122 2777777777765 2332 3
Q ss_pred cchhccchHHhhhcc--CchhHHHHHHHHH-------------------------------HHHHHhhCChhHHhhhHHH
Q psy14015 86 EYVHCLLPPLESLAT--VEETVVRDKAVES-------------------------------LRLISAQHSPHDLEAHFVP 132 (318)
Q Consensus 86 ~~~~~llp~l~~l~~--d~~~~VR~~a~~~-------------------------------l~~l~~~~~~~~~~~~ilp 132 (318)
+..+.++..+..-.. -.+...|--++.. +...+.+.+...+...=-.
T Consensus 524 dvts~ilqtlmekse~El~d~~~RFL~LGL~llflgkqe~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~q 603 (878)
T KOG2005|consen 524 DVTSSILQTLMEKSETELEDQWFRFLALGLALLFLGKQESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQSQ 603 (878)
T ss_pred HHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhcccchHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEechh
Confidence 444555555544322 1233444433321 1111111111110000001
Q ss_pred HHHHhhcCCCchhhh-hhhhhhhhhccccCcchHHHH-HHHHHhhccCCCcccccchhh-cC----ccchHHHHHHHHHh
Q psy14015 133 LVQRLASGDWFTSRT-SACGLFSVCYPRVTAGVKAEL-RSHFRNLCQDDTPMQQGHVWE-CG----SGVKAELRSHFRNL 205 (318)
Q Consensus 133 ~~~~l~~d~~~~vR~-~a~~~l~~~~~~~~~~~~~~l-~~~~~~l~~~~~~~vR~~v~~-~~----~~~~~~ll~~l~~l 205 (318)
.+.+.+.+....--. .-...||...-..+++...++ ...|..+.....|.+|+.|.- ++ ..=+=+++..+.++
T Consensus 604 ~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM~lR~f~h~l~yge~~iRravPLal~llsvSNPq~~vlDtLsk~ 683 (878)
T KOG2005|consen 604 LLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQVNVLDTLSKF 683 (878)
T ss_pred hhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcchHHHHHHHh
Confidence 112222221100000 001223322223445554433 478888888888888886431 11 12234688999999
Q ss_pred hcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHh----hcCCcH--HHHHHHHHHHHHHH
Q psy14015 206 CQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNL----AQDEQD--SVRLLAVEACVSIA 264 (318)
Q Consensus 206 ~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l----l~D~~~--~VR~aa~~~l~~l~ 264 (318)
.+|.+.+|-.+++.++|-++.--.. ..+-..+.++ .+|++. .|| .+..+..++
T Consensus 684 shd~D~eva~naIfamGLiGAGTnN----ARla~mLrqlaSYyyKd~~~Lf~vr--iAQGL~hlG 742 (878)
T KOG2005|consen 684 SHDGDLEVAMNAIFAMGLIGAGTNN----ARLAQMLRQLASYYYKDSKALFVVR--IAQGLVHLG 742 (878)
T ss_pred ccCcchHHHHHHHHHhccccCCcch----HHHHHHHHHHHHHHhccchhHHHHH--HHHHHHHhc
Confidence 9999999999999999988753222 2233334443 466654 444 344555444
No 272
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=59.81 E-value=10 Score=31.32 Aligned_cols=57 Identities=12% Similarity=-0.042 Sum_probs=36.9
Q ss_pred CchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhcc
Q psy14015 101 VEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYP 158 (318)
Q Consensus 101 d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~ 158 (318)
|+--++|.+|.+++..+.+.+...--...++..+..-++| ...+|.-+..++.+++.
T Consensus 38 DDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~ 94 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQ 94 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHH
Confidence 4456788888888888877654432223356666666677 67788877777776643
No 273
>PF05536 Neurochondrin: Neurochondrin
Probab=59.80 E-value=1.3e+02 Score=29.93 Aligned_cols=160 Identities=18% Similarity=0.205 Sum_probs=82.3
Q ss_pred chhhhhhhhcCC-hH-HHHHHHHHHHcccccCcCc-ccch-hccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHh
Q psy14015 52 ELIPFLTETIYD-ED-EVLLALAEQLGTFTPNVGG-PEYV-HCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLE 127 (318)
Q Consensus 52 ~llp~l~~l~~D-~~-~VR~~aa~~L~~l~~~~~~-~~~~-~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~ 127 (318)
.-+|.+.+.+.. ++ ++-..+..-|..++..-.| .... ..-+|.+-+...+ .....+.|+..+..+....+.+.+.
T Consensus 98 ~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~ 176 (543)
T PF05536_consen 98 SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWA 176 (543)
T ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhh
Confidence 446666665533 33 3445555555555532211 1111 1122333332222 4556677777777766655532211
Q ss_pred ------hhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHH
Q psy14015 128 ------AHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSH 201 (318)
Q Consensus 128 ------~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~ 201 (318)
..+++.+.+.+....-..+..++..++.++...+.. |. .....+.+..++..-
T Consensus 177 ~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~-----------------~~----~~~~~~~W~~~l~~g 235 (543)
T PF05536_consen 177 EDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPIL-----------------PL----ESPPSPKWLSDLRKG 235 (543)
T ss_pred hhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCcc-----------------cc----ccCChhhhHHHHHHH
Confidence 124444444443333334455555555544433100 00 000112456777777
Q ss_pred HHHhhcCC-CHHHHHHHHHhhHHHHHHhchhhh
Q psy14015 202 FRNLCQDD-TPMVRRAAAGKLGELAKVVEVDYL 233 (318)
Q Consensus 202 l~~l~~D~-~~~VR~~aa~~L~~l~~~~~~~~~ 233 (318)
+..+++.. .+.-|..+....+.+.+.+|.+|.
T Consensus 236 l~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~wl 268 (543)
T PF05536_consen 236 LRDILQSRLTPSQRDPALNLAASLLDLLGPEWL 268 (543)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhChHhh
Confidence 77777764 478899999999999999998764
No 274
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=59.61 E-value=1.7e+02 Score=28.14 Aligned_cols=125 Identities=16% Similarity=0.172 Sum_probs=71.0
Q ss_pred ccHHHHHHHHHhHHHHHHhhChH--hHhhchhhhhhhhcCCh-HH-HHHHHHHHHcccccCcCc------ccchhccchH
Q psy14015 25 EDVQLRLNSIKKLSTIALALGQE--RTRGELIPFLTETIYDE-DE-VLLALAEQLGTFTPNVGG------PEYVHCLLPP 94 (318)
Q Consensus 25 ~~~~~R~~~~~~L~~ia~~lg~~--~~~~~llp~l~~l~~D~-~~-VR~~aa~~L~~l~~~~~~------~~~~~~llp~ 94 (318)
+|..+=...++.+..+...+.|. ...+.|...+...++++ ++ .-.-+-+.++.+.+.... ..+.+.++|.
T Consensus 42 ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~ 121 (435)
T PF03378_consen 42 ENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPP 121 (435)
T ss_dssp C-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHH
Confidence 34444334444444332223322 13455666666677764 35 556666666666554332 1356779999
Q ss_pred HhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhh
Q psy14015 95 LESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSA 149 (318)
Q Consensus 95 l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a 149 (318)
+...+..+-.+.-..+...+..+.+..+.....+.+..++..+++...|..|.+.
T Consensus 122 f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni 176 (435)
T PF03378_consen 122 FQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI 176 (435)
T ss_dssp HHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc
Confidence 9998877755555777888888888876444445555555566677778766544
No 275
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=59.01 E-value=1.7e+02 Score=27.87 Aligned_cols=208 Identities=11% Similarity=0.094 Sum_probs=104.2
Q ss_pred hccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh--hHHhhhHHHHHHHhhcCC-CchhhhhhhhhhhhhccccCcchH
Q psy14015 89 HCLLPPLESLATVEETVVRDKAVESLRLISAQHSP--HDLEAHFVPLVQRLASGD-WFTSRTSACGLFSVCYPRVTAGVK 165 (318)
Q Consensus 89 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~~~~~~ilp~~~~l~~d~-~~~vR~~a~~~l~~~~~~~~~~~~ 165 (318)
..++--+..++..+|+.-|...-..+..+...+.. ..+...+...+.++..+. ....=....+++|.++.+++...+
T Consensus 132 ~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk 211 (409)
T PF01603_consen 132 QKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLK 211 (409)
T ss_dssp HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCc
Confidence 34555567777888899999999999998877644 333344555555554433 222223445666777776664444
Q ss_pred HHH----HHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhc-CCC-----------------HHHHHHHHHhhHH
Q psy14015 166 AEL----RSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ-DDT-----------------PMVRRAAAGKLGE 223 (318)
Q Consensus 166 ~~l----~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~-D~~-----------------~~VR~~aa~~L~~ 223 (318)
.+. ...+-.|.+...-. ...+.+..++..+++ |+. ..=--....-+..
T Consensus 212 ~eh~~fl~~vllPLh~~~~~~----------~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~ 281 (409)
T PF01603_consen 212 EEHKQFLRKVLLPLHKSPHLS----------SYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEE 281 (409)
T ss_dssp HHHHHHHHHTTGGGGGSTGGG----------GTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcHH----------HHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHH
Confidence 433 23333333322111 233455555554443 332 1111234444555
Q ss_pred HHHHhchhhhHh---hHHHHHHHhhcCCcHHHHHHHHHHHHH--HHhhCChhhhhHhhHHHHHHhccccccccccCCCCC
Q psy14015 224 LAKVVEVDYLKT---DIIPMFVNLAQDEQDSVRLLAVEACVS--IASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEF 298 (318)
Q Consensus 224 l~~~~~~~~~~~---~llp~l~~ll~D~~~~VR~aa~~~l~~--l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~ 298 (318)
+...++++.+.. .+...+...++.++..|=..|+.-+.+ +...+ ....+.++|.+...+..... ..
T Consensus 282 il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li--~~~~~~i~p~i~~~L~~~~~-------~H 352 (409)
T PF01603_consen 282 ILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLI--SQNSRVILPIIFPALYRNSK-------NH 352 (409)
T ss_dssp HHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHH--HCTHHHHHHHHHHHHSSTTS-------S-
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHH--HhChHHHHHHHHHHHHHHHH-------HH
Confidence 555555554433 345555566788888887776643322 12222 12335678888887765221 34
Q ss_pred CchhhHHhhhhhhhhhh
Q psy14015 299 HPLELHVISATTLRLMR 315 (318)
Q Consensus 299 ~~Vr~~~i~~~~~~~~~ 315 (318)
|+-...-...+.|..+.
T Consensus 353 Wn~~Vr~~a~~vl~~l~ 369 (409)
T PF01603_consen 353 WNQTVRNLAQNVLKILM 369 (409)
T ss_dssp SSTTHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 44444444445555543
No 276
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=59.01 E-value=25 Score=35.46 Aligned_cols=144 Identities=17% Similarity=0.095 Sum_probs=71.8
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChH---hHh-------hc-hhhhhhhhcC--ChHH-HHHHHHHHHccccc
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQE---RTR-------GE-LIPFLTETIY--DEDE-VLLALAEQLGTFTP 80 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~---~~~-------~~-llp~l~~l~~--D~~~-VR~~aa~~L~~l~~ 80 (318)
+..+.+.+.|.+..+|-+++..++++++.+|-. .+. +. .+..+.+-++ +.+| +...+..-++ +++
T Consensus 248 V~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a-la~ 326 (993)
T COG5234 248 VDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFIDIIELMTENMFLSPLENTCDIIITNELVWHGAILFFA-LAG 326 (993)
T ss_pred HHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHHHHHhcccccchhhhhCccceeecchHHHHHHHHHHH-Hhh
Confidence 344456666777899999999999999887632 111 11 2222333232 2445 6666665555 544
Q ss_pred CcCcccchhccchHHhhhcc--------CchhHHHHHHHHHHHHHHhhCCh---hHHhhhHHHH-HHHhhcCCCchhhhh
Q psy14015 81 NVGGPEYVHCLLPPLESLAT--------VEETVVRDKAVESLRLISAQHSP---HDLEAHFVPL-VQRLASGDWFTSRTS 148 (318)
Q Consensus 81 ~~~~~~~~~~llp~l~~l~~--------d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~ilp~-~~~l~~d~~~~vR~~ 148 (318)
..+-.-....+.|++..-+. -+-..||.++...+-.+..-.+. +.....+.-. +.+.+-|++..+|++
T Consensus 327 ~~~id~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpel~vRr~ 406 (993)
T COG5234 327 AGLIDYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPELNVRRA 406 (993)
T ss_pred ccccchhhhhhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhhhcCchhhhhhH
Confidence 33211111124444322221 11235666654444333322111 1111112222 233567888888887
Q ss_pred hhhhhhhhccc
Q psy14015 149 ACGLFSVCYPR 159 (318)
Q Consensus 149 a~~~l~~~~~~ 159 (318)
|...+-+.+++
T Consensus 407 a~Aal~E~iGR 417 (993)
T COG5234 407 ATAALFEVIGR 417 (993)
T ss_pred HHHHHHHHhcc
Confidence 77766665554
No 277
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=58.58 E-value=85 Score=24.37 Aligned_cols=36 Identities=0% Similarity=-0.053 Sum_probs=21.6
Q ss_pred hHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcch
Q psy14015 129 HFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGV 164 (318)
Q Consensus 129 ~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~ 164 (318)
.+..++.+-+++++.+|+.-+..++--++..-+..+
T Consensus 38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f 73 (122)
T cd03572 38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDF 73 (122)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHH
Confidence 366667666777777777666665554444433333
No 278
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=58.23 E-value=60 Score=32.22 Aligned_cols=59 Identities=22% Similarity=0.240 Sum_probs=40.1
Q ss_pred hHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHh
Q psy14015 164 VKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVV 228 (318)
Q Consensus 164 ~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~ 228 (318)
.+-.+++.+..+++...|.-.+ ......+...|..++.|.+|-++.-|..+|+.||+..
T Consensus 496 ~kl~~~~FLs~lg~~~i~~~~q------~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T 554 (559)
T PF14868_consen 496 VKLALLDFLSSLGKLFIPESDQ------NPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERT 554 (559)
T ss_pred chHHHHHHHHHhccccCCcccc------chhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccC
Confidence 4445555555565555443000 0233556777888999999999999999999999753
No 279
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=57.67 E-value=1.2e+02 Score=25.72 Aligned_cols=14 Identities=36% Similarity=0.631 Sum_probs=8.2
Q ss_pred hHHhhhHHHHHHHh
Q psy14015 124 HDLEAHFVPLVQRL 137 (318)
Q Consensus 124 ~~~~~~ilp~~~~l 137 (318)
..+.++++|+...+
T Consensus 112 ~fF~~~~lPla~~~ 125 (198)
T PF08161_consen 112 SFFVEEFLPLARRL 125 (198)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455577776554
No 280
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=57.24 E-value=2.1e+02 Score=28.46 Aligned_cols=66 Identities=15% Similarity=0.092 Sum_probs=46.7
Q ss_pred HhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCCCCchhhHHh
Q psy14015 227 VVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVI 306 (318)
Q Consensus 227 ~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i 306 (318)
.+|.+.-.+.++-.|.+++.-.+.++|....-+.+-++. .+-+-.++..+.+..+| .+-+|-++.|
T Consensus 632 amGedig~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~----SnPQm~vfDtL~r~shd----------~dl~v~~ntI 697 (881)
T COG5110 632 AMGEDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSP----SNPQMNVFDTLERSSHD----------GDLNVIINTI 697 (881)
T ss_pred hhcchhhHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccC----CCcchHHHHHHHHhccc----------cchhHHHHHH
Confidence 345554445677788888888899999988777665553 33344678888899998 6666666655
No 281
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=57.02 E-value=1.1e+02 Score=25.22 Aligned_cols=55 Identities=18% Similarity=0.164 Sum_probs=39.4
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcC-CcHHHHH
Q psy14015 195 KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQD-EQDSVRL 254 (318)
Q Consensus 195 ~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D-~~~~VR~ 254 (318)
...+++.+..+..|+...||++++.+|..++... .+.+++++.+...+ +....|.
T Consensus 139 ~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~-----~~~v~~~l~~~~~~~~~~t~r~ 194 (197)
T cd06561 139 FDLLLEIIERLLHDEEYFVQKAVGWALREYGKKD-----PERVIAFLEKNGLSMPRLTLRY 194 (197)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhC-----HHHHHHHHHHHHHhCChHHHHH
Confidence 3667888888999999999999999999999862 23456655544333 3444443
No 282
>KOG1992|consensus
Probab=56.76 E-value=2.5e+02 Score=29.25 Aligned_cols=124 Identities=19% Similarity=0.252 Sum_probs=70.1
Q ss_pred CccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCCh-HH-HHHHHHHHHccccc--CcCc--------ccchhcc
Q psy14015 24 NEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDE-DE-VLLALAEQLGTFTP--NVGG--------PEYVHCL 91 (318)
Q Consensus 24 ~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~-~~-VR~~aa~~L~~l~~--~~~~--------~~~~~~l 91 (318)
+.++.+|..+-+.|.... |.. ..-+-++.-+.++. ++ +|.+++-.++++++ +... +...+.+
T Consensus 16 ~pdps~rk~aEr~L~~~e---~q~---~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~i 89 (960)
T KOG1992|consen 16 SPDPSVRKPAERALRSLE---GQQ---NYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQI 89 (960)
T ss_pred CCCCccCchHHHHHHHhc---cCC---CchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHH
Confidence 666889999988888863 222 22333333333443 45 99999999999886 1111 1122334
Q ss_pred chHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHH-hhcCCC---chhhhhhhhhhh
Q psy14015 92 LPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQR-LASGDW---FTSRTSACGLFS 154 (318)
Q Consensus 92 lp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~-l~~d~~---~~vR~~a~~~l~ 154 (318)
-..+..+.-..-..+...-.+++..++++==++.+.. ++|-+.+ +.+++. ..|+..|..+|.
T Consensus 90 kslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWpt-Ll~dL~~~ls~~D~~~~~gVL~tahsiFk 155 (960)
T KOG1992|consen 90 KSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPT-LLPDLVARLSSGDFNVINGVLVTAHSIFK 155 (960)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHH-HHHHHHhhccccchHHHHHHHHHHHHHHH
Confidence 4555555445556777777788888886533334444 6665554 443332 234444444443
No 283
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=56.03 E-value=32 Score=25.92 Aligned_cols=59 Identities=14% Similarity=0.182 Sum_probs=41.2
Q ss_pred HHHHHHHHHcccccCcCcccc---hhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhh
Q psy14015 67 VLLALAEQLGTFTPNVGGPEY---VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEA 128 (318)
Q Consensus 67 VR~~aa~~L~~l~~~~~~~~~---~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~ 128 (318)
-|+.+.+.++.+.+ ++++.. ...++-.|+..+.. ++.|..|.++-..+...++.+++..
T Consensus 31 ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~--~~l~~~al~~W~~fi~~L~~~~l~~ 92 (107)
T PF08064_consen 31 EKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEI--PELREEALSCWNCFIKTLDEEDLGP 92 (107)
T ss_pred HHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCC--hhhHHHHHHHHHHHHHHCCHHHHHH
Confidence 77888888888887 444322 23344445554444 3899999999999999998876554
No 284
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=55.75 E-value=1e+02 Score=24.46 Aligned_cols=73 Identities=11% Similarity=0.067 Sum_probs=45.5
Q ss_pred HHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcC----
Q psy14015 133 LVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQD---- 208 (318)
Q Consensus 133 ~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D---- 208 (318)
.+.+-+++++..+-.-|..++..+....+..+..++ .++.++.-+.++..+
T Consensus 42 ai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~ev-------------------------as~~Fl~el~kl~~~k~~~ 96 (139)
T cd03567 42 LLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEV-------------------------GKFRFLNELIKLVSPKYLG 96 (139)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHH-------------------------HhHHHHHHHHHHhccccCC
Confidence 344444566666666666666666655555444443 224445556666542
Q ss_pred --CCHHHHHHHHHhhHHHHHHhch
Q psy14015 209 --DTPMVRRAAAGKLGELAKVVEV 230 (318)
Q Consensus 209 --~~~~VR~~aa~~L~~l~~~~~~ 230 (318)
....||.-+..-+...+..++.
T Consensus 97 ~~~~~~Vk~kil~li~~W~~~f~~ 120 (139)
T cd03567 97 SRTSEKVKTKIIELLYSWTLELPH 120 (139)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcc
Confidence 5689999999888888877653
No 285
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=55.19 E-value=2.4e+02 Score=28.58 Aligned_cols=166 Identities=13% Similarity=0.126 Sum_probs=96.2
Q ss_pred hhCChhHHhhhHHHHHHHhhcCCCch--hhhhhhhhhhhhccccCcchHHH-HHHHHHhhccCCCccccc----chhh--
Q psy14015 119 AQHSPHDLEAHFVPLVQRLASGDWFT--SRTSACGLFSVCYPRVTAGVKAE-LRSHFRNLCQDDTPMQQG----HVWE-- 189 (318)
Q Consensus 119 ~~~~~~~~~~~ilp~~~~l~~d~~~~--vR~~a~~~l~~~~~~~~~~~~~~-l~~~~~~l~~~~~~~vR~----~v~~-- 189 (318)
.++...+....++..+.....|..|. .-...|+.+|.+.+..++...+. +...+..|..- +.+-|+ .|..
T Consensus 471 thL~v~Dte~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~L-cemKrgKdnKAVvASn 549 (1053)
T COG5101 471 THLIVDDTEKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLAL-CEMKRGKDNKAVVASN 549 (1053)
T ss_pred hhhhhhhHHHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHH-HHHhhcCCcchhhecc
Confidence 34445556666777776666776554 44577888888877777654433 33444332211 111111 1221
Q ss_pred ----cCc---------cchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh----------hhHhhHHHHHHHhhc
Q psy14015 190 ----CGS---------GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD----------YLKTDIIPMFVNLAQ 246 (318)
Q Consensus 190 ----~~~---------~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~----------~~~~~llp~l~~ll~ 246 (318)
.|+ .+-+.++.-+.+++......|...|+.++-++++.+..+ .+...++--+-+-..
T Consensus 550 IMyvvGQYpRFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~ 629 (1053)
T COG5101 550 IMYVVGQYPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTG 629 (1053)
T ss_pred eeeeeccchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcc
Confidence 121 122345555667777778899999999999999987432 222233333333345
Q ss_pred CCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhcc
Q psy14015 247 DEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSV 285 (318)
Q Consensus 247 D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~ 285 (318)
|=.+.-...+-++++-+..-.++..-.+.++-.+.++.+
T Consensus 630 dL~pqQ~htfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn 668 (1053)
T COG5101 630 DLEPQQKHTFYEACGMVISEVPKTRDYKRLVLDLMDLPN 668 (1053)
T ss_pred cCChHHHhHHHHHHhHHHhccchhhHHHHHHHHHHHhhH
Confidence 667777777888888887777666555555555555444
No 286
>KOG2081|consensus
Probab=54.72 E-value=2.2e+02 Score=28.05 Aligned_cols=128 Identities=14% Similarity=0.062 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccc
Q psy14015 105 VVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQ 184 (318)
Q Consensus 105 ~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR 184 (318)
.-|.+..+.+..++-..+.........-.+++ +..+|..-.++.-.+..+...++ |
T Consensus 367 ~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~-------------------~--- 422 (559)
T KOG2081|consen 367 EFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVS-------------------P--- 422 (559)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCC-------------------c---
Confidence 45666666666666666554433332222222 34456655555444443333222 1
Q ss_pred cchhhcCccchHHHHHHHHHhhc--CCCHHHHHHHHHhhHHHHHHhchhhhH-hhHHHHHHHhhcCCcHHHHHHHHHHHH
Q psy14015 185 GHVWECGSGVKAELRSHFRNLCQ--DDTPMVRRAAAGKLGELAKVVEVDYLK-TDIIPMFVNLAQDEQDSVRLLAVEACV 261 (318)
Q Consensus 185 ~~v~~~~~~~~~~ll~~l~~l~~--D~~~~VR~~aa~~L~~l~~~~~~~~~~-~~llp~l~~ll~D~~~~VR~aa~~~l~ 261 (318)
....++|-.+++.. ++...+|+.++.-+|++.+.+...... +-++.+....+.+.. .-.+++.++.
T Consensus 423 ---------~e~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~~~ 491 (559)
T KOG2081|consen 423 ---------EENTIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALAFH 491 (559)
T ss_pred ---------cccchHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHHHH
Confidence 23456777766654 466779999999999999988754322 334445556666655 4455555666
Q ss_pred HHHhhC
Q psy14015 262 SIASLL 267 (318)
Q Consensus 262 ~l~~~l 267 (318)
.++..+
T Consensus 492 ~i~~~c 497 (559)
T KOG2081|consen 492 RICSAC 497 (559)
T ss_pred HHHHHH
Confidence 666544
No 287
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.66 E-value=77 Score=29.51 Aligned_cols=63 Identities=16% Similarity=0.026 Sum_probs=30.8
Q ss_pred HHHHHhhcCCCHHHHHHHHHhhHHHHHHhc-hhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHH
Q psy14015 200 SHFRNLCQDDTPMVRRAAAGKLGELAKVVE-VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVS 262 (318)
Q Consensus 200 ~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~-~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~ 262 (318)
.-++.+.++++..=|.-++..++.....-+ .....+.+.+++..|+.|++..||+.++.+|.+
T Consensus 10 ~~~i~~~~~a~~~eR~~~A~~l~~~~~~~~~sr~d~~~~~~l~~~Ll~d~s~~vrr~lA~aL~~ 73 (364)
T COG5330 10 QDLIRLLEEASSGERALAARVLAFASLQRPLSREDMRQFEDLARPLLDDSSEEVRRELAAALAQ 73 (364)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHh
Confidence 344455555555555444444443332222 111233455555566666666666666655554
No 288
>KOG4500|consensus
Probab=53.99 E-value=2.1e+02 Score=27.54 Aligned_cols=106 Identities=11% Similarity=0.148 Sum_probs=67.4
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHhhHHHHHHh------chhhhHhhHHHHHHH-hhcCCcHHHHHHHHHHHHHHHhhC-Ch
Q psy14015 198 LRSHFRNLCQDDTPMVRRAAAGKLGELAKVV------EVDYLKTDIIPMFVN-LAQDEQDSVRLLAVEACVSIASLL-SQ 269 (318)
Q Consensus 198 ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~------~~~~~~~~llp~l~~-ll~D~~~~VR~aa~~~l~~l~~~l-~~ 269 (318)
++..+.+-+...+...--+.+-++|.++..- -++.+.++++..+.+ --.|.+..+.-+++.++.++.--. ++
T Consensus 316 ~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nk 395 (604)
T KOG4500|consen 316 FLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNK 395 (604)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCch
Confidence 5555556666667777777888888888642 123445566665554 445667777788888888876433 33
Q ss_pred hhhhHh-hHHHHHHhccccccccccCCCCCCchhhHHhhhhhhhhhh
Q psy14015 270 SDVEQL-VMPTLRQCSVQIVDHKFCPNNEFHPLELHVISATTLRLMR 315 (318)
Q Consensus 270 ~~~~~~-l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~~~~~~~ 315 (318)
..+.+. +...++..++= +.|.|.+... +|||..+
T Consensus 396 a~~~~aGvteaIL~~lk~----------~~ppv~fkll--gTlrM~~ 430 (604)
T KOG4500|consen 396 AHFAPAGVTEAILLQLKL----------ASPPVTFKLL--GTLRMIR 430 (604)
T ss_pred hhccccchHHHHHHHHHh----------cCCcchHHHH--HHHHHHH
Confidence 333332 55567778887 7888888777 6666543
No 289
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=53.58 E-value=74 Score=27.39 Aligned_cols=69 Identities=19% Similarity=0.032 Sum_probs=47.3
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhh
Q psy14015 195 KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASL 266 (318)
Q Consensus 195 ~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~ 266 (318)
...+++.+....++.+.-.|++++-..-.... .+....+++++...+++|...-||++...+|.++++.
T Consensus 116 ~~~li~~~~a~~~~~~~w~rraaiv~~l~~~k---~~~~~~~if~i~E~~l~d~e~fV~KAigWaLrq~~k~ 184 (222)
T COG4912 116 WPDLIEEWAADAEEDNRWERRAAIVHQLVYKK---KTLDLLEIFEIIELLLGDKEFFVQKAIGWALRQIGKH 184 (222)
T ss_pred CHHHHHHHHhccccchHHHHHHHHHHHHHHhc---CccchhHHHHHHHHHccChHHHHHHHHHHHHHHHHhh
Confidence 45677887555555554455444433332322 2223346999999999999999999999999999973
No 290
>KOG2021|consensus
Probab=53.52 E-value=2.8e+02 Score=28.74 Aligned_cols=86 Identities=13% Similarity=0.039 Sum_probs=46.7
Q ss_pred chhhhhh--hhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhc-----cCchhHHHHHHHHHHHHHHhhCCh
Q psy14015 52 ELIPFLT--ETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLA-----TVEETVVRDKAVESLRLISAQHSP 123 (318)
Q Consensus 52 ~llp~l~--~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~-----~d~~~~VR~~a~~~l~~l~~~~~~ 123 (318)
.+++.+. +++..+.+ |...-.+.+.+..+++.. ..+++.-++..++ ...+..||..|-.-+..+...+.+
T Consensus 491 ~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~--esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkk 568 (980)
T KOG2021|consen 491 LNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFST--ESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKK 568 (980)
T ss_pred HHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhc--chhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHH
Confidence 4455553 34444545 665555555555444432 1233434444444 345689999999988888887654
Q ss_pred hH--HhhhHHHHHHHhhc
Q psy14015 124 HD--LEAHFVPLVQRLAS 139 (318)
Q Consensus 124 ~~--~~~~ilp~~~~l~~ 139 (318)
.- +.+.++..+..+++
T Consensus 569 qlvpfie~iln~iqdlL~ 586 (980)
T KOG2021|consen 569 QLVPFIEEILNKIQDLLH 586 (980)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 22 22334444555554
No 291
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=53.42 E-value=39 Score=25.54 Aligned_cols=73 Identities=11% Similarity=0.145 Sum_probs=47.6
Q ss_pred hhhhhhhcCChH---H--HHHHHHHHHcccccCcCcc--cchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHH
Q psy14015 54 IPFLTETIYDED---E--VLLALAEQLGTFTPNVGGP--EYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDL 126 (318)
Q Consensus 54 lp~l~~l~~D~~---~--VR~~aa~~L~~l~~~~~~~--~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~ 126 (318)
+..+...+.|.+ + -|+.+.+.++.+.+..|+. .....+.-.|+.-+. .++.|..|.++-..+...++++++
T Consensus 13 l~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~l 90 (107)
T smart00802 13 LAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEEL 90 (107)
T ss_pred HHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHHH
Confidence 344444555544 3 5888888999888855531 112224444555454 456999999999999999998765
Q ss_pred hh
Q psy14015 127 EA 128 (318)
Q Consensus 127 ~~ 128 (318)
..
T Consensus 91 ~~ 92 (107)
T smart00802 91 GP 92 (107)
T ss_pred HH
Confidence 44
No 292
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=52.34 E-value=89 Score=22.74 Aligned_cols=66 Identities=18% Similarity=0.185 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhcCCC--HHHHHHHHHhhHHHHHH-hchhhhHhhHHHHHHHhhcCCcH--HHHHHHHHHHH
Q psy14015 196 AELRSHFRNLCQDDT--PMVRRAAAGKLGELAKV-VEVDYLKTDIIPMFVNLAQDEQD--SVRLLAVEACV 261 (318)
Q Consensus 196 ~~ll~~l~~l~~D~~--~~VR~~aa~~L~~l~~~-~~~~~~~~~llp~l~~ll~D~~~--~VR~aa~~~l~ 261 (318)
++.+..+.+..+|.. -+||++|-++.-.+..- -.+.......+.++....+||+. +.|-..-..++
T Consensus 16 ~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~e~e~p~vRaAtaIsiLeeisnDPNmP~h~RT~iw~vis 86 (93)
T COG1698 16 NQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNNEGESPAVRAATAISILEEISNDPNMPLHARTLIWNVIS 86 (93)
T ss_pred HHHHHHHHHHHccccccHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 456777778888875 47999999888877652 11222234688888899999965 55554444333
No 293
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=52.00 E-value=30 Score=33.88 Aligned_cols=111 Identities=10% Similarity=-0.016 Sum_probs=56.5
Q ss_pred cchHHhhhccCchhHHHHHHHHHHHHHHhhC---ChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHH
Q psy14015 91 LLPPLESLATVEETVVRDKAVESLRLISAQH---SPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAE 167 (318)
Q Consensus 91 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~---~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~ 167 (318)
+...+..++++|+-.|...+..+++.+.-.+ +.......++..+.++...+.-..|....+.+.-+.-......+
T Consensus 432 I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ek-- 509 (743)
T COG5369 432 IVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEK-- 509 (743)
T ss_pred hHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhh--
Confidence 4445556666666666555555555544333 23345555777777766544334444443333221111111111
Q ss_pred HHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHH
Q psy14015 168 LRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAK 226 (318)
Q Consensus 168 l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~ 226 (318)
|.-| .+--+..++.+++||.|.|...+.+-|-.+.-
T Consensus 510 ----f~~L-------------------akig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 510 ----FKFL-------------------AKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred ----hhhH-------------------HhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 1111 11124556777888888888777777766653
No 294
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=50.80 E-value=1.1e+02 Score=23.28 Aligned_cols=33 Identities=12% Similarity=0.124 Sum_probs=20.9
Q ss_pred HhhhHHHHHHHhhc-CCCchhhhhhhhhhhhhcc
Q psy14015 126 LEAHFVPLVQRLAS-GDWFTSRTSACGLFSVCYP 158 (318)
Q Consensus 126 ~~~~ilp~~~~l~~-d~~~~vR~~a~~~l~~~~~ 158 (318)
....++|.+.+.++ ......|.++..+++.+..
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~ 36 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLAS 36 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh
Confidence 34457788877666 5556777777666654443
No 295
>KOG0889|consensus
Probab=50.24 E-value=5.8e+02 Score=31.48 Aligned_cols=269 Identities=17% Similarity=0.153 Sum_probs=138.9
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHh----hChH------hHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcC
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALA----LGQE------RTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVG 83 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~----lg~~------~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~ 83 (318)
+..+.+-+..++...|..-...+..+-.. +|.. ..-+++.+-+.++|.|+.| -|.+..-.++-+...+.
T Consensus 986 ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~~ 1065 (3550)
T KOG0889|consen 986 LDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESMP 1065 (3550)
T ss_pred HHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhch
Confidence 77888889999999998888888877432 4521 1345677777788999999 88877777776655433
Q ss_pred ccc---chhccchHHhhhccCchhHHHH----HHHHHHHHHHhh----CCh-----hHHhhhHHHHHHHhhcCCCchhhh
Q psy14015 84 GPE---YVHCLLPPLESLATVEETVVRD----KAVESLRLISAQ----HSP-----HDLEAHFVPLVQRLASGDWFTSRT 147 (318)
Q Consensus 84 ~~~---~~~~llp~l~~l~~d~~~~VR~----~a~~~l~~l~~~----~~~-----~~~~~~ilp~~~~l~~d~~~~vR~ 147 (318)
... +...++..+...+.|...++-. .+-.++..+... ... ......+.|++.++.+ ++..||.
T Consensus 1066 ~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~n-pN~~VR~ 1144 (3550)
T KOG0889|consen 1066 SLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFN-PNSDVRE 1144 (3550)
T ss_pred HHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcC-CchHHHH
Confidence 111 1112333333334444333322 222222222211 111 1233446667777765 5569999
Q ss_pred hhhhhhhhhccccCcchHHHHHHHHHhhc--cCCCcccccc--------------hhhcCc---cchHHHHH---HHHHh
Q psy14015 148 SACGLFSVCYPRVTAGVKAELRSHFRNLC--QDDTPMQQGH--------------VWECGS---GVKAELRS---HFRNL 205 (318)
Q Consensus 148 ~a~~~l~~~~~~~~~~~~~~l~~~~~~l~--~~~~~~vR~~--------------v~~~~~---~~~~~ll~---~l~~l 205 (318)
.+...|..+...-+.++. .+..-+.++. .-.....|.. |..+++ +..+++.. .+..+
T Consensus 1145 ~~~~~L~~i~~~s~~~v~-~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~~~~L 1223 (3550)
T KOG0889|consen 1145 FSQKLLRLISELSGKSVV-KLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRFLIAL 1223 (3550)
T ss_pred HHHHHHHHHHHHcCCcHH-HHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHHHHHh
Confidence 998888776555433332 2223233322 1111123320 112222 12222222 12222
Q ss_pred hcCCCH------------------HHHHHHHHhhHHHHHHhchh-----hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHH
Q psy14015 206 CQDDTP------------------MVRRAAAGKLGELAKVVEVD-----YLKTDIIPMFVNLAQDEQDSVRLLAVEACVS 262 (318)
Q Consensus 206 ~~D~~~------------------~VR~~aa~~L~~l~~~~~~~-----~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~ 262 (318)
+.++.+ ..|-+|...++.......-. ....+++..|.+.+..+....-.++..++..
T Consensus 1224 a~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~l~~ 1303 (3550)
T KOG0889|consen 1224 ADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEGLRK 1303 (3550)
T ss_pred hhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 222211 22667777777666543221 1345566655555555555555666666555
Q ss_pred HHh---hCChhhhhHhhHHHHHHhcc
Q psy14015 263 IAS---LLSQSDVEQLVMPTLRQCSV 285 (318)
Q Consensus 263 l~~---~l~~~~~~~~l~p~l~~ll~ 285 (318)
+.. .++++.-+..+-|.+..+-+
T Consensus 1304 v~~~~~~~~ke~lq~~lrplL~~l~d 1329 (3550)
T KOG0889|consen 1304 VLAQDVKLPKELLQSHLRPLLMNLSD 1329 (3550)
T ss_pred hhhccccccHHHHHhhHHHHHHhhhH
Confidence 553 45666666666666655443
No 296
>KOG2759|consensus
Probab=49.32 E-value=29 Score=32.80 Aligned_cols=64 Identities=11% Similarity=0.128 Sum_probs=0.0
Q ss_pred hHHHHHHHhhcCCc-HHHHHHHHHHHHHHHhhC--ChhhhhHh-hHHHHHHhccccccccccCCCCCCchhhHHhhhh
Q psy14015 236 DIIPMFVNLAQDEQ-DSVRLLAVEACVSIASLL--SQSDVEQL-VMPTLRQCSVQIVDHKFCPNNEFHPLELHVISAT 309 (318)
Q Consensus 236 ~llp~l~~ll~D~~-~~VR~aa~~~l~~l~~~l--~~~~~~~~-l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~ 309 (318)
+++-.+.++++-.+ +.+=..|+.-|+++.... |+....++ --..++.+++- ++|+||.+++.+.
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh----------~d~~Vry~ALlav 433 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNH----------EDPEVRYHALLAV 433 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcC----------CCchHHHHHHHHH
No 297
>KOG0891|consensus
Probab=48.09 E-value=1.6e+02 Score=34.60 Aligned_cols=90 Identities=13% Similarity=0.078 Sum_probs=41.1
Q ss_pred CChHHHHHHHHHHHcccccCcCc--------ccchhccchHHhhh-ccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHH
Q psy14015 62 YDEDEVLLALAEQLGTFTPNVGG--------PEYVHCLLPPLESL-ATVEETVVRDKAVESLRLISAQHSPHDLEAHFVP 132 (318)
Q Consensus 62 ~D~~~VR~~aa~~L~~l~~~~~~--------~~~~~~llp~l~~l-~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp 132 (318)
.|++++|..++.....+....-. -+..+.++..+..+ ..|+++.+|.+...++. ..+.+.......+-
T Consensus 492 ~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~~~~laQ~~~lr 568 (2341)
T KOG0891|consen 492 ADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERFDAQLAQPDLLR 568 (2341)
T ss_pred cccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cchhhhhcCchhHH
Confidence 44566888886665554331111 01123334444444 45677777776555544 11111111111222
Q ss_pred HHHHhhcCCCchhhhhhhhhhh
Q psy14015 133 LVQRLASGDWFTSRTSACGLFS 154 (318)
Q Consensus 133 ~~~~l~~d~~~~vR~~a~~~l~ 154 (318)
......+|....+|..+...+|
T Consensus 569 ~~~~al~~~~l~~~~~~~~~ig 590 (2341)
T KOG0891|consen 569 LLFIALHDENFAIQELATVIIG 590 (2341)
T ss_pred HHHHHhhhhhhhhHHhHHhhcc
Confidence 2333345555556655555544
No 298
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=47.47 E-value=71 Score=27.50 Aligned_cols=103 Identities=10% Similarity=-0.074 Sum_probs=59.7
Q ss_pred hhhhhhcCC-hHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHH
Q psy14015 55 PFLTETIYD-EDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVP 132 (318)
Q Consensus 55 p~l~~l~~D-~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp 132 (318)
..+.++++. +.| |-..++..+.. ....+.+.+.+.....+++.-.|.++.-...... ..+.....+++
T Consensus 88 ~~~~~~i~~~nnW~vvD~la~~~V~-------~~~~~~li~~~~a~~~~~~~w~rraaiv~~l~~~---k~~~~~~~if~ 157 (222)
T COG4912 88 EEYDQWINTVNNWAVVDTLANHFVG-------IPLWPDLIEEWAADAEEDNRWERRAAIVHQLVYK---KKTLDLLEIFE 157 (222)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhhc-------cccCHHHHHHHHhccccchHHHHHHHHHHHHHHh---cCccchhHHHH
Confidence 344455555 445 66666655443 1234445566644444444455555443333333 22222235888
Q ss_pred HHHHhhcCCCchhhhhhhhhhhhhccccCcchHHH
Q psy14015 133 LVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAE 167 (318)
Q Consensus 133 ~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~ 167 (318)
++..+++|..+.||.+....|..+..+..+.....
T Consensus 158 i~E~~l~d~e~fV~KAigWaLrq~~k~~~e~~~~a 192 (222)
T COG4912 158 IIELLLGDKEFFVQKAIGWALRQIGKHSNELWVRA 192 (222)
T ss_pred HHHHHccChHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 88888888888899988888888877655554433
No 299
>KOG0891|consensus
Probab=45.90 E-value=2.8e+02 Score=32.81 Aligned_cols=70 Identities=21% Similarity=0.247 Sum_probs=53.8
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch--hhhHhhHHHHHHHhhcCCcH-HHHHHHHHHHHHHHh
Q psy14015 196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV--DYLKTDIIPMFVNLAQDEQD-SVRLLAVEACVSIAS 265 (318)
Q Consensus 196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~--~~~~~~llp~l~~ll~D~~~-~VR~aa~~~l~~l~~ 265 (318)
..++..+...++|+...|-+++..+.++++..-|. ......+++.+.+.+.|.+- .-|.++..+++++..
T Consensus 647 ~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s 719 (2341)
T KOG0891|consen 647 GPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLES 719 (2341)
T ss_pred CchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhc
Confidence 34556677778899999999999999999999883 23334788888888887755 556777778888774
No 300
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=43.70 E-value=3.9e+02 Score=27.68 Aligned_cols=90 Identities=9% Similarity=-0.031 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCCh-hhhhH
Q psy14015 196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ-SDVEQ 274 (318)
Q Consensus 196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~-~~~~~ 274 (318)
..+++.+.-.++++.--.|.-++..+..+..-+........+.....+.+++.+--||-.|+-|+.-+...-.. +.+..
T Consensus 459 ~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sa 538 (970)
T COG5656 459 YFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSA 538 (970)
T ss_pred HHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHh
Confidence 34556666667777777777777777777555544444555666666777777777888888777766543311 22334
Q ss_pred hhHHHHHHhcc
Q psy14015 275 LVMPTLRQCSV 285 (318)
Q Consensus 275 ~l~p~l~~ll~ 285 (318)
++-+.+..+|+
T Consensus 539 hVp~tmekLLs 549 (970)
T COG5656 539 HVPETMEKLLS 549 (970)
T ss_pred hhhHHHHHHHH
Confidence 44444444443
No 301
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=43.30 E-value=54 Score=28.52 Aligned_cols=72 Identities=19% Similarity=0.140 Sum_probs=52.9
Q ss_pred chhccchHHhhhcc-CchhHHHHHHHHHHHHHHhhCChhH----HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhcc
Q psy14015 87 YVHCLLPPLESLAT-VEETVVRDKAVESLRLISAQHSPHD----LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYP 158 (318)
Q Consensus 87 ~~~~llp~l~~l~~-d~~~~VR~~a~~~l~~l~~~~~~~~----~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~ 158 (318)
+.-.++|.+....+ .+-+..|..++..++.+.+.-+++. ....++|+..+.....+...+..|+-++++++.
T Consensus 142 iplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaifI~qkil~ 218 (315)
T COG5209 142 IPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIFQKILG 218 (315)
T ss_pred cceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 34457777776644 3357889999999999988766543 233489999998888888888888888888753
No 302
>KOG1993|consensus
Probab=42.15 E-value=4.2e+02 Score=27.62 Aligned_cols=173 Identities=13% Similarity=0.120 Sum_probs=91.0
Q ss_pred cchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCC-CchhhhhhhhhhhhhccccCcchHHHHH
Q psy14015 91 LLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGD-WFTSRTSACGLFSVCYPRVTAGVKAELR 169 (318)
Q Consensus 91 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~-~~~vR~~a~~~l~~~~~~~~~~~~~~l~ 169 (318)
++|-+. -..++...+|+..+-.++.-.+.--+++....+.-.+.+++.|. +--||.+++..+...+.... +..+
T Consensus 489 llpEl~-~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~n--F~~d-- 563 (978)
T KOG1993|consen 489 LLPELA-NDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWN--FSED-- 563 (978)
T ss_pred hCHHhh-hcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhcc--CChh--
Confidence 444444 22233345566655455554443222333333445556677775 56677777776655443221 1100
Q ss_pred HHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcC-CCHHHHHHHHHhhHHHHHHhchhh--hHhhHHHHHHHhhc
Q psy14015 170 SHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQD-DTPMVRRAAAGKLGELAKVVEVDY--LKTDIIPMFVNLAQ 246 (318)
Q Consensus 170 ~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D-~~~~VR~~aa~~L~~l~~~~~~~~--~~~~llp~l~~ll~ 246 (318)
.|. ...+.+.-.+.++++- +.-+-|-.+...++.+.+..+.-. ....++.++-.+-+
T Consensus 564 -sFl-------------------p~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe 623 (978)
T KOG1993|consen 564 -SFL-------------------PYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWE 623 (978)
T ss_pred -hhh-------------------hhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 000 1123444444555442 234456666666666665544311 12234444443332
Q ss_pred --CCcHHHHHHHHHHHHHHHhhCChhh--hhHhhHHHHHHhcccccc
Q psy14015 247 --DEQDSVRLLAVEACVSIASLLSQSD--VEQLVMPTLRQCSVQIVD 289 (318)
Q Consensus 247 --D~~~~VR~aa~~~l~~l~~~l~~~~--~~~~l~p~l~~ll~D~~~ 289 (318)
..++-.|.+...++.++...+|... +...+.|. +++..|+++
T Consensus 624 ~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pV-Iel~~D~~s 669 (978)
T KOG1993|consen 624 ESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPV-IELSTDPSS 669 (978)
T ss_pred hhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHH-HHHhcCCCC
Confidence 3566899999999999999998864 44566665 456677665
No 303
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=41.72 E-value=64 Score=30.89 Aligned_cols=68 Identities=21% Similarity=0.233 Sum_probs=48.6
Q ss_pred HHHHHHHHhhc-CCCHHHHHHHHHhhHHHHHHh--chhhhHh-hHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy14015 197 ELRSHFRNLCQ-DDTPMVRRAAAGKLGELAKVV--EVDYLKT-DIIPMFVNLAQDEQDSVRLLAVEACVSIA 264 (318)
Q Consensus 197 ~ll~~l~~l~~-D~~~~VR~~aa~~L~~l~~~~--~~~~~~~-~llp~l~~ll~D~~~~VR~aa~~~l~~l~ 264 (318)
+++..+.+++. ..++.+=..|+.-+|+++... |...+.. ..-..+..+++++++.||..|..++..+.
T Consensus 353 ~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 353 ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 56777777773 345666678889999999875 3332211 14456779999999999999999887763
No 304
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=39.36 E-value=3.3e+02 Score=25.54 Aligned_cols=218 Identities=12% Similarity=0.072 Sum_probs=110.9
Q ss_pred CccHHHHHHHHHhHHHHHHhhC-hHhHhhchhhhhh--hhcCCh-HH-HHHHHHHHHcccccCcC-cccchhccchHHhh
Q psy14015 24 NEDVQLRLNSIKKLSTIALALG-QERTRGELIPFLT--ETIYDE-DE-VLLALAEQLGTFTPNVG-GPEYVHCLLPPLES 97 (318)
Q Consensus 24 ~~~~~~R~~~~~~L~~ia~~lg-~~~~~~~llp~l~--~l~~D~-~~-VR~~aa~~L~~l~~~~~-~~~~~~~llp~l~~ 97 (318)
+++..+|..+.+.+.-...... -+...+.=++++. .+..|. .+ =|.+|.+-...+...-+ .......++-.+..
T Consensus 36 ~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvralva 115 (371)
T PF14664_consen 36 SDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVA 115 (371)
T ss_pred CCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHH
Confidence 4458888888888866532210 1111111134443 344443 23 67777777766665433 33455557777888
Q ss_pred hccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhcc
Q psy14015 98 LATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQ 177 (318)
Q Consensus 98 l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~ 177 (318)
...++++..|..|++++++++-.-++=.....-+..+.+.+.|+....-.+.+..+-.++.. +..|+.+
T Consensus 116 iae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~--p~tR~yl--------- 184 (371)
T PF14664_consen 116 IAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDS--PRTRKYL--------- 184 (371)
T ss_pred HHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCC--cchhhhh---------
Confidence 88889999999999999998865433111112233333333433332222222221111110 1111111
Q ss_pred CCCcccccchhhcCccchHHHHHHHHHh----hcCCCH-HHHHHHHHhhHHHHHHhc------hhhhHhhHHHHHHHhhc
Q psy14015 178 DDTPMQQGHVWECGSGVKAELRSHFRNL----CQDDTP-MVRRAAAGKLGELAKVVE------VDYLKTDIIPMFVNLAQ 246 (318)
Q Consensus 178 ~~~~~vR~~v~~~~~~~~~~ll~~l~~l----~~D~~~-~VR~~aa~~L~~l~~~~~------~~~~~~~llp~l~~ll~ 246 (318)
|. ...-+.++.+|... .++... +.-+++..++..+...+. .+.. .-+..+...+.
T Consensus 185 ------~~------~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~--~~lksLv~~L~ 250 (371)
T PF14664_consen 185 ------RP------GFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF--RGLKSLVDSLR 250 (371)
T ss_pred ------cC------CccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc--hHHHHHHHHHc
Confidence 00 01123455555554 222221 344556666666665432 2211 34445556667
Q ss_pred CCcHHHHHHHHHHHHHHHhh
Q psy14015 247 DEQDSVRLLAVEACVSIASL 266 (318)
Q Consensus 247 D~~~~VR~aa~~~l~~l~~~ 266 (318)
-|+..+|......+-.+..+
T Consensus 251 ~p~~~ir~~Ildll~dllri 270 (371)
T PF14664_consen 251 LPNPEIRKAILDLLFDLLRI 270 (371)
T ss_pred CCCHHHHHHHHHHHHHHHCC
Confidence 78888898888777776643
No 305
>KOG2199|consensus
Probab=39.35 E-value=3.4e+02 Score=25.71 Aligned_cols=77 Identities=13% Similarity=0.163 Sum_probs=46.4
Q ss_pred HHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcC-
Q psy14015 130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQD- 208 (318)
Q Consensus 130 ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D- 208 (318)
.+..+.+-++..+.+|-.-|+.+++.+...++..++.++ ....+..-|..++.|
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EV-------------------------sSr~F~~el~al~~~~ 100 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEV-------------------------SSRDFTTELRALIESK 100 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHH-------------------------hhhhHHHHHHHHHhhc
Confidence 444455555666667777777777777777666665554 223344455555553
Q ss_pred CCHHHHHHHHHhhHHHHHHhchh
Q psy14015 209 DTPMVRRAAAGKLGELAKVVEVD 231 (318)
Q Consensus 209 ~~~~VR~~aa~~L~~l~~~~~~~ 231 (318)
..+.|++....-+-+++..|..+
T Consensus 101 ~h~kV~~k~~~lv~eWsee~K~D 123 (462)
T KOG2199|consen 101 AHPKVCEKMRDLVKEWSEEFKKD 123 (462)
T ss_pred ccHHHHHHHHHHHHHHHHHhccC
Confidence 34677777666666666655443
No 306
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=39.07 E-value=67 Score=24.27 Aligned_cols=27 Identities=26% Similarity=0.118 Sum_probs=20.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHhhHHHH
Q psy14015 199 RSHFRNLCQDDTPMVRRAAAGKLGELA 225 (318)
Q Consensus 199 l~~l~~l~~D~~~~VR~~aa~~L~~l~ 225 (318)
...++.|++||+..||..||..+-.+.
T Consensus 49 r~aLl~LL~hpn~~VRl~AA~~~L~~~ 75 (106)
T PF09450_consen 49 RDALLPLLKHPNMQVRLWAAAHTLRYA 75 (106)
T ss_dssp GGGGGGGGGSS-HHHHHHHHHTTTTT-
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHhC
Confidence 366788999999999998888776654
No 307
>COG2733 Predicted membrane protein [Function unknown]
Probab=38.77 E-value=3.4e+02 Score=25.61 Aligned_cols=35 Identities=17% Similarity=0.106 Sum_probs=25.0
Q ss_pred hhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCCh
Q psy14015 235 TDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ 269 (318)
Q Consensus 235 ~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~ 269 (318)
..+-..+..-.++++..+|...+.+...+++-+-.
T Consensus 300 ~~~~~~l~~D~e~~~s~l~~~l~~~~~~~Ge~l~~ 334 (415)
T COG2733 300 TSLSEWLKEDYESEDSMLRKRLARAVQSVGEELIA 334 (415)
T ss_pred HHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHhc
Confidence 34444556667888888888888888888876633
No 308
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=38.62 E-value=2.8e+02 Score=24.58 Aligned_cols=52 Identities=8% Similarity=0.080 Sum_probs=37.2
Q ss_pred hhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhh-hhHhhHHHHHHhccc
Q psy14015 235 TDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD-VEQLVMPTLRQCSVQ 286 (318)
Q Consensus 235 ~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~-~~~~l~p~l~~ll~D 286 (318)
..++-.+..++.....++|..++..+..+.+.+.-+. ....++..+.+++..
T Consensus 187 ~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t 239 (262)
T PF14225_consen 187 FQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQT 239 (262)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCC
Confidence 4566677788888888889888888888887664332 334477777888877
No 309
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=38.50 E-value=2e+02 Score=24.02 Aligned_cols=26 Identities=19% Similarity=0.116 Sum_probs=14.5
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHhhH
Q psy14015 195 KAELRSHFRNLCQDDTPMVRRAAAGKLG 222 (318)
Q Consensus 195 ~~~ll~~l~~l~~D~~~~VR~~aa~~L~ 222 (318)
.....|.+.+++.= +..|......+.
T Consensus 68 ~~~~F~~l~~LL~~--~~y~~~ll~Glv 93 (193)
T PF12612_consen 68 SSEYFPRLVKLLDL--PEYRYSLLSGLV 93 (193)
T ss_pred HHHHHHHHHHHhcc--HHHHHHHHhHHH
Confidence 34566777777643 355555554444
No 310
>PF05536 Neurochondrin: Neurochondrin
Probab=38.20 E-value=4.1e+02 Score=26.35 Aligned_cols=145 Identities=17% Similarity=0.180 Sum_probs=80.3
Q ss_pred hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhCh-----HhHhhch-hhhhhhhcCC-------hHH-HHHHHHHHHcccc
Q psy14015 14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQ-----ERTRGEL-IPFLTETIYD-------EDE-VLLALAEQLGTFT 79 (318)
Q Consensus 14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~-----~~~~~~l-lp~l~~l~~D-------~~~-VR~~aa~~L~~l~ 79 (318)
++.+-+..|++.+-..|....--+.++.+.-+. ....+.+ .+|+.+++.. +.. .+.-+...|..|+
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 466777778877766777766666666432110 0011112 3455666543 233 6677777777777
Q ss_pred cC--cCcccchhccchHHhhhccCchh-HHHHHHHHHHHHHHhhCCh-hH-HhhhHHHHHHHhhcCCCchhhhhhhhhhh
Q psy14015 80 PN--VGGPEYVHCLLPPLESLATVEET-VVRDKAVESLRLISAQHSP-HD-LEAHFVPLVQRLASGDWFTSRTSACGLFS 154 (318)
Q Consensus 80 ~~--~~~~~~~~~llp~l~~l~~d~~~-~VR~~a~~~l~~l~~~~~~-~~-~~~~ilp~~~~l~~d~~~~vR~~a~~~l~ 154 (318)
.. +......-.-+|.+.+.+....+ .+-.-|+++|..++..-.. +. +..-.+|.+.+...+ .......|..++.
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~ 164 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLL 164 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHH
Confidence 52 11111223366888777666555 8888899999999955433 22 222345555544443 3344555655555
Q ss_pred hhccc
Q psy14015 155 VCYPR 159 (318)
Q Consensus 155 ~~~~~ 159 (318)
.++..
T Consensus 165 ~Lls~ 169 (543)
T PF05536_consen 165 NLLSR 169 (543)
T ss_pred HHHHh
Confidence 54443
No 311
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=37.96 E-value=3.2e+02 Score=24.93 Aligned_cols=13 Identities=8% Similarity=0.130 Sum_probs=7.6
Q ss_pred HHHHHHHHhHHHH
Q psy14015 28 QLRLNSIKKLSTI 40 (318)
Q Consensus 28 ~~R~~~~~~L~~i 40 (318)
..|-..++.++.+
T Consensus 37 ~~r~~~~~~~~~~ 49 (367)
T PF04286_consen 37 KNRERIAESIGEM 49 (367)
T ss_pred ccHHHHHHHHHHH
Confidence 3455666666665
No 312
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.77 E-value=1.1e+02 Score=28.52 Aligned_cols=65 Identities=18% Similarity=0.105 Sum_probs=48.2
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHhhC-hHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccc
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALG-QERTRGELIPFLTETIYDEDE-VLLALAEQLGTFT 79 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg-~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~ 79 (318)
+..++..+++.....|..++..++-....-+ ...-...+-+.+..|+.|.++ ||+.++..|.+.-
T Consensus 9 ~~~~i~~~~~a~~~eR~~~A~~l~~~~~~~~~sr~d~~~~~~l~~~Ll~d~s~~vrr~lA~aL~~~~ 75 (364)
T COG5330 9 DQDLIRLLEEASSGERALAARVLAFASLQRPLSREDMRQFEDLARPLLDDSSEEVRRELAAALAQCE 75 (364)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHhCC
Confidence 4456788889999999888888776543322 122355677888889999887 9999999999753
No 313
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=37.15 E-value=1.8e+02 Score=21.81 Aligned_cols=69 Identities=19% Similarity=0.144 Sum_probs=47.1
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhh---Hh-hHHHHHHH------hhcCCcHHHHHHHHHHHHHH
Q psy14015 195 KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYL---KT-DIIPMFVN------LAQDEQDSVRLLAVEACVSI 263 (318)
Q Consensus 195 ~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~---~~-~llp~l~~------ll~D~~~~VR~aa~~~l~~l 263 (318)
..+++..+.+-+++.+|.+-.-+..-|-.+..+.|.... .. ..+-.+.+ .-.|....||..+...+...
T Consensus 35 ~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 35 PKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 356788888888999999999999999999999886532 11 11111111 12356778888887665544
No 314
>KOG0904|consensus
Probab=36.30 E-value=3.2e+02 Score=28.77 Aligned_cols=83 Identities=14% Similarity=0.045 Sum_probs=50.9
Q ss_pred Cchhhhhhhhh----hhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhh--cCCCHHHHH
Q psy14015 142 WFTSRTSACGL----FSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLC--QDDTPMVRR 215 (318)
Q Consensus 142 ~~~vR~~a~~~----l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~--~D~~~~VR~ 215 (318)
-|.-|.-...- ++++...+.|.-+.+.++.+.-|+.-..+. ....++|+ +=+++.||.
T Consensus 566 lW~~R~~~~~~~Pe~L~kLllsvkW~~redvAqmy~LL~~Wp~l~----------------v~~aleLLd~nypD~~VR~ 629 (1076)
T KOG0904|consen 566 LWHLRHEILKHFPEALPKLLLSVKWNKREDVAQMYYLLKDWPPLS----------------VELALELLDCNYPDPNVRA 629 (1076)
T ss_pred HHHHHHHHHHhChHHHHHHHheeeeccHHHHHHHHHHHhhCCCCC----------------HHHHHHHhcCCCCcHHHHH
Confidence 37777766444 445545556777888888777776544332 22234444 237789999
Q ss_pred HHHHhhHHHHHHhchhhhHhhHHHHHHHh
Q psy14015 216 AAAGKLGELAKVVEVDYLKTDIIPMFVNL 244 (318)
Q Consensus 216 ~aa~~L~~l~~~~~~~~~~~~llp~l~~l 244 (318)
.|+.+|.. +..+.+...+++.+..+
T Consensus 630 fAV~~L~~----Lsdd~l~~YLLqLVQal 654 (1076)
T KOG0904|consen 630 FAVRCLEQ----LSDDDLLQYLLQLVQAL 654 (1076)
T ss_pred HHHHHHHh----cChhHHHHHHHHHHHHH
Confidence 99999843 44455556666655544
No 315
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=34.73 E-value=2.3e+02 Score=22.42 Aligned_cols=67 Identities=7% Similarity=0.088 Sum_probs=41.2
Q ss_pred CCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHH-HHHhhcC---CCHHHHH
Q psy14015 140 GDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSH-FRNLCQD---DTPMVRR 215 (318)
Q Consensus 140 d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~-l~~l~~D---~~~~VR~ 215 (318)
+++..+-..|..++..+....+..+..++ .+++++.- +.+++.+ ....|+.
T Consensus 50 ~~n~~v~l~aL~LLe~~vkNCG~~fh~ei-------------------------ask~Fl~e~L~~~i~~~~~~~~~Vk~ 104 (141)
T cd03565 50 NKNHKEVMLTLTVLETCVKNCGHRFHVLV-------------------------AKKDFIKDVLVKLINPKNNPPTIVQE 104 (141)
T ss_pred CCCHHHHHHHHHHHHHHHHHccHHHHHHH-------------------------HHHHhhhHHHHHHHcccCCCcHHHHH
Confidence 44555555566666666555555444443 22344443 6666653 3468999
Q ss_pred HHHHhhHHHHHHhchh
Q psy14015 216 AAAGKLGELAKVVEVD 231 (318)
Q Consensus 216 ~aa~~L~~l~~~~~~~ 231 (318)
-+..-+..++..|+.+
T Consensus 105 kil~li~~W~~~f~~~ 120 (141)
T cd03565 105 KVLALIQAWADAFRGS 120 (141)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999998877644
No 316
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=32.31 E-value=5.4e+02 Score=25.96 Aligned_cols=163 Identities=17% Similarity=0.013 Sum_probs=85.6
Q ss_pred HhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHh
Q psy14015 95 LESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRN 174 (318)
Q Consensus 95 l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~ 174 (318)
+.+-..|-++.+|.-++.++..-.+.++.-.....++.+.-=++.|.+..+|....+++..++.+.+.. .
T Consensus 280 fvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~--d-------- 349 (740)
T COG5537 280 FVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHT--D-------- 349 (740)
T ss_pred HhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcc--h--------
Confidence 344457778899999998888887776653322222222223456666777777666665544433211 0
Q ss_pred hccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHH
Q psy14015 175 LCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRL 254 (318)
Q Consensus 175 l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~ 254 (318)
.+|+ +....-..++--+..|.+- ||-.+++.+..+... |. ....-+-.+..++=|-.+.-|.
T Consensus 350 -------~ir~-------f~eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~l-g~--L~~SeIlIvsscmlDi~pd~r~ 411 (740)
T COG5537 350 -------AIRR-------FVERFKDRILEFLRTDSDC-VRICSIKSLCYLRIL-GV--LSSSEILIVSSCMLDIIPDSRE 411 (740)
T ss_pred -------HHHH-------HHHHHHHHHHHHHhhccch-hhHHHHHHHHHHHHh-cc--cchhHHHHHHHHHhcCCCcchH
Confidence 0111 0111122333344567666 999988888776542 21 1122333455556666666555
Q ss_pred HHHHHHHHHHhhCChh--------hhhHhhHHHHHHhcc
Q psy14015 255 LAVEACVSIASLLSQS--------DVEQLVMPTLRQCSV 285 (318)
Q Consensus 255 aa~~~l~~l~~~l~~~--------~~~~~l~p~l~~ll~ 285 (318)
...+....+|++.... .-+..++|.+.+...
T Consensus 412 ~~~E~v~~icK~~aevikEKipl~~k~n~lL~a~~qgse 450 (740)
T COG5537 412 NIVESVESICKIDAEVIKEKIPLATKTNRLLEAMKQGSE 450 (740)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhhhHHHHHHhhhh
Confidence 5555555555432111 112456666666554
No 317
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=31.88 E-value=4.2e+02 Score=24.50 Aligned_cols=91 Identities=13% Similarity=0.249 Sum_probs=59.9
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhc-----hhhh-HhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCCh
Q psy14015 196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE-----VDYL-KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ 269 (318)
Q Consensus 196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~-----~~~~-~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~ 269 (318)
+.....+.++++.++.-.|+.+.+-||++...-. ..++ ..+-+-.+..+++|++..+|--|...+--+...=.+
T Consensus 208 d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K 287 (335)
T PF08569_consen 208 DRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNK 287 (335)
T ss_dssp HHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-
T ss_pred HHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCC
Confidence 4566788999999999999999999999984211 0111 235777888999999999999988877766543222
Q ss_pred h-h-------hhHhhHHHHHHhccc
Q psy14015 270 S-D-------VEQLVMPTLRQCSVQ 286 (318)
Q Consensus 270 ~-~-------~~~~l~p~l~~ll~D 286 (318)
. . ..+.++-.+..+..|
T Consensus 288 ~~~I~~iL~~Nr~kLl~fl~~f~~~ 312 (335)
T PF08569_consen 288 PPPIVDILIKNREKLLRFLKDFHTD 312 (335)
T ss_dssp BHHHHHHHHHTHHHHHHHHHTTTTT
T ss_pred ChHHHHHHHHHHHHHHHHHHhCCCC
Confidence 1 1 124466666666666
No 318
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=31.64 E-value=5.4e+02 Score=25.74 Aligned_cols=30 Identities=10% Similarity=0.046 Sum_probs=26.2
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHhhHHHHH
Q psy14015 197 ELRSHFRNLCQDDTPMVRRAAAGKLGELAK 226 (318)
Q Consensus 197 ~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~ 226 (318)
.++..+.+..+|.+-+|-.+++.++|-++.
T Consensus 676 ~vfDtL~r~shd~dl~v~~ntIfamGLiGA 705 (881)
T COG5110 676 NVFDTLERSSHDGDLNVIINTIFAMGLIGA 705 (881)
T ss_pred HHHHHHHHhccccchhHHHHHHHHhhcccc
Confidence 467888899999999999999999997765
No 319
>KOG1789|consensus
Probab=31.38 E-value=4e+02 Score=29.07 Aligned_cols=149 Identities=14% Similarity=0.143 Sum_probs=80.8
Q ss_pred HHcccccCcCcccchhccchHHhhhcc-CchhHHHHHHHHHHHHHHhhCCh-hH-HhhhHHHHHHHhhcCCCchhhhhhh
Q psy14015 74 QLGTFTPNVGGPEYVHCLLPPLESLAT-VEETVVRDKAVESLRLISAQHSP-HD-LEAHFVPLVQRLASGDWFTSRTSAC 150 (318)
Q Consensus 74 ~L~~l~~~~~~~~~~~~llp~l~~l~~-d~~~~VR~~a~~~l~~l~~~~~~-~~-~~~~ilp~~~~l~~d~~~~vR~~a~ 150 (318)
.-+.+++.+|.+...-..++++..++. ..+..+..-|++.+..+..+-+= +. ...-.+..+..|+++. +..|..+.
T Consensus 1755 ~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS~-PS~R~~vL 1833 (2235)
T KOG1789|consen 1755 ANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHSQ-PSMRARVL 1833 (2235)
T ss_pred hCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhcC-hHHHHHHH
Confidence 334566667765444445555555443 44567777777766555433211 11 2222556667777753 45666555
Q ss_pred hhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHH--Hh
Q psy14015 151 GLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAK--VV 228 (318)
Q Consensus 151 ~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~--~~ 228 (318)
..|-.+.. +.....+. ..+..++.++-.+|....+.+|.++|.-|+++.. -.
T Consensus 1834 ~vLYAL~S--~~~i~keA------------------------~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~ 1887 (2235)
T KOG1789|consen 1834 DVLYALSS--NGQIGKEA------------------------LEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLT 1887 (2235)
T ss_pred HHHHHHhc--CcHHHHHH------------------------HhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhcccc
Confidence 54432210 11111111 0122355666677888899999999999999874 23
Q ss_pred chhh--hHhhHHH-HHHHhhcCCc
Q psy14015 229 EVDY--LKTDIIP-MFVNLAQDEQ 249 (318)
Q Consensus 229 ~~~~--~~~~llp-~l~~ll~D~~ 249 (318)
|+.. ..-+.+| .|...++|.-
T Consensus 1888 GPrV~ITL~kFLP~~f~d~~RD~P 1911 (2235)
T KOG1789|consen 1888 GPRVTITLIKFLPEIFADSLRDSP 1911 (2235)
T ss_pred CCceeeehHHhchHHHHHHHhcCH
Confidence 5432 2234555 5556666653
No 320
>KOG0803|consensus
Probab=31.32 E-value=7.8e+02 Score=27.48 Aligned_cols=224 Identities=12% Similarity=0.057 Sum_probs=106.9
Q ss_pred hchhhhhhhhcCChHHHHHHHHHHHcccccCcCcccchh---ccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh--H
Q psy14015 51 GELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVH---CLLPPLESLATVEETVVRDKAVESLRLISAQHSPH--D 125 (318)
Q Consensus 51 ~~llp~l~~l~~D~~~VR~~aa~~L~~l~~~~~~~~~~~---~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~ 125 (318)
.++.-.+..+.+-+.-.+.-+..-|+++......+.... ...-++..+..|.+..||......+..+...+.+. .
T Consensus 41 sel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp 120 (1312)
T KOG0803|consen 41 SELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSP 120 (1312)
T ss_pred HHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 345555556665444455666666777765443332222 22335678889999999999999999998877553 1
Q ss_pred HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHH----HhhccCCCcccccchhhcCccchHHHHHH
Q psy14015 126 LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHF----RNLCQDDTPMQQGHVWECGSGVKAELRSH 201 (318)
Q Consensus 126 ~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~----~~l~~~~~~~vR~~v~~~~~~~~~~ll~~ 201 (318)
....++|...-...|....+-.+|-..+..... ++-+.++...+ ..++.+.. .. ..+.-++.
T Consensus 121 ~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~---~ek~~~v~~~c~~~i~~~~~~~~-------~~----~~~~slSd 186 (1312)
T KOG0803|consen 121 FLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFA---EEKDRHVWFKCDPEIFYLVTEIL-------VK----ETPDSLSD 186 (1312)
T ss_pred HHHhhhhhhhheecccchHHHHHHHHHHHhhcC---hhhhHHHHHHhhHHHHHHHHHHH-------hc----cCccccch
Confidence 112233333222334433333333222222211 11111111000 00100000 00 00000011
Q ss_pred HHHhh----cCCCHHHHHHHHHhhHHHHHHhchhhhHhh---------HHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCC
Q psy14015 202 FRNLC----QDDTPMVRRAAAGKLGELAKVVEVDYLKTD---------IIPMFVNLAQDEQDSVRLLAVEACVSIASLLS 268 (318)
Q Consensus 202 l~~l~----~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~---------llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~ 268 (318)
...+. +-...+|-..+...+..+....|.+.-... --..|-++++++++.+|.+..+.+-.+.+.+.
T Consensus 187 ~~~~s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~ 266 (1312)
T KOG0803|consen 187 LRTLSSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDIL 266 (1312)
T ss_pred hhhcchHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhH
Confidence 01111 111233444555555555554454311110 12255677899999999999998887776554
Q ss_pred hh---hhhHhhHHHHHHhccccc
Q psy14015 269 QS---DVEQLVMPTLRQCSVQIV 288 (318)
Q Consensus 269 ~~---~~~~~l~p~l~~ll~D~~ 288 (318)
.- ....++-|.+.....+-+
T Consensus 267 ~~~~~~~~~~l~~~~~~~~~~~d 289 (1312)
T KOG0803|consen 267 NRVMESEKNYLKPVLLGSIDSLD 289 (1312)
T ss_pred HhcchhhhhHhhHHHHccccccc
Confidence 43 123456666666665533
No 321
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=30.66 E-value=4.7e+02 Score=24.78 Aligned_cols=66 Identities=21% Similarity=0.177 Sum_probs=40.0
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHh-hChH-hHhhchhhhhhhhcCC-hHH-HHHHHHHHHccccc
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALA-LGQE-RTRGELIPFLTETIYD-EDE-VLLALAEQLGTFTP 80 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~-lg~~-~~~~~llp~l~~l~~D-~~~-VR~~aa~~L~~l~~ 80 (318)
+..+++.+.|+|+.+|..+..-|..+-.. .+.. ..+..+...+.+...+ ... --..+.+.++.+..
T Consensus 135 i~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~ 204 (409)
T PF01603_consen 135 IKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIIN 204 (409)
T ss_dssp HHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHh
Confidence 77888999999999999988888887433 3322 1344444444444443 222 33555555555544
No 322
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=29.72 E-value=4.3e+02 Score=24.05 Aligned_cols=92 Identities=9% Similarity=0.008 Sum_probs=63.0
Q ss_pred HHHHHHHHHhhc-C--CCHHHHHHHHHhhHHHHHHh-------chhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHh
Q psy14015 196 AELRSHFRNLCQ-D--DTPMVRRAAAGKLGELAKVV-------EVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIAS 265 (318)
Q Consensus 196 ~~ll~~l~~l~~-D--~~~~VR~~aa~~L~~l~~~~-------~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~ 265 (318)
+.+..+.+.+.+ | +-|+.|....+-+..+.... +++ ....++..+.-..++++..|-..++.++..+..
T Consensus 116 ~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~-~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~ 194 (319)
T PF08767_consen 116 EAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPE-QFKLVIDSIVWGFKHTNREISETGLNILLELLN 194 (319)
T ss_dssp HHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HH-HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 444555555544 3 34899988888777777653 233 346678888889999999999999999999888
Q ss_pred hCCh---hh----hhHh---hHHHHHHhccccc
Q psy14015 266 LLSQ---SD----VEQL---VMPTLRQCSVQIV 288 (318)
Q Consensus 266 ~l~~---~~----~~~~---l~p~l~~ll~D~~ 288 (318)
.+.+ +. .+++ ++..+...+.|+.
T Consensus 195 ~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~ 227 (319)
T PF08767_consen 195 NVSKTNPEFANQFYQQYYLDILQDIFSVLTDSD 227 (319)
T ss_dssp HHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 7765 21 2222 5566667788844
No 323
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=29.28 E-value=1.7e+02 Score=20.42 Aligned_cols=39 Identities=21% Similarity=0.276 Sum_probs=31.4
Q ss_pred CCCCCCchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhC
Q psy14015 7 APDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALG 45 (318)
Q Consensus 7 ~~~~~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg 45 (318)
+|+..=+-|.++....+|..+..|..+++.|+.|....+
T Consensus 33 ~p~~aGYTi~El~~L~RSsv~~QR~~al~~L~~Il~~~~ 71 (73)
T PF08620_consen 33 DPEAAGYTIQELFHLSRSSVPSQRCIALQTLGRILYRAG 71 (73)
T ss_pred CCCcCCcCHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh
Confidence 344444568899999999999999999999999875543
No 324
>PRK04330 hypothetical protein; Provisional
Probab=29.21 E-value=2.3e+02 Score=20.64 Aligned_cols=67 Identities=16% Similarity=0.144 Sum_probs=44.6
Q ss_pred hHHHHHHHHHhhcCCC--HHHHHHHHHhhHHHHHHhc-hhhhHhhHHHHHHHhhcCCcH--HHHHHHHHHHH
Q psy14015 195 KAELRSHFRNLCQDDT--PMVRRAAAGKLGELAKVVE-VDYLKTDIIPMFVNLAQDEQD--SVRLLAVEACV 261 (318)
Q Consensus 195 ~~~ll~~l~~l~~D~~--~~VR~~aa~~L~~l~~~~~-~~~~~~~llp~l~~ll~D~~~--~VR~aa~~~l~ 261 (318)
-++.+..+-+..+|.. -++|++|..+...+...=. ........+..+....+||+. +.|-..-..++
T Consensus 11 ik~~~~~L~~I~~D~sVPRNIRraa~ea~~~L~~e~~~~~vRaA~AIs~LdeIs~DPNmP~h~RT~IW~ivS 82 (88)
T PRK04330 11 IKQAIQMLEEIINDTSVPRNIRRAATEAKEILLNEEESPGVRAATAISILDEISNDPNMPLHTRTLIWNIVS 82 (88)
T ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhCcCcchhHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Confidence 3566777888888876 4699999988887764211 111234578888888999975 55655444433
No 325
>KOG1048|consensus
Probab=28.55 E-value=3.4e+02 Score=27.87 Aligned_cols=103 Identities=19% Similarity=0.245 Sum_probs=68.6
Q ss_pred hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhh-----chhhhhhhhcCChH-HHHHHHHHHHcccccCcCcccc
Q psy14015 14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRG-----ELIPFLTETIYDED-EVLLALAEQLGTFTPNVGGPEY 87 (318)
Q Consensus 14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~-----~llp~l~~l~~D~~-~VR~~aa~~L~~l~~~~~~~~~ 87 (318)
.+++.+..|.+.++.+-..+.-.+-.++ +|....+. .=+|.+..++.... +|++.++-+|.++. +|....
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlc--fgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLv--f~~~~~ 309 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLC--FGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLV--FGKSTD 309 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHH--hhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhh--cccCCc
Confidence 4778888888888888777777777775 34333222 23677888887655 59999999999885 232221
Q ss_pred h-------hccchHHhhhccC-chhHHHHHHHHHHHHHHhh
Q psy14015 88 V-------HCLLPPLESLATV-EETVVRDKAVESLRLISAQ 120 (318)
Q Consensus 88 ~-------~~llp~l~~l~~d-~~~~VR~~a~~~l~~l~~~ 120 (318)
. ..=+|.+.+++.. .|++||+...-.+-.+.+.
T Consensus 310 ~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~ 350 (717)
T KOG1048|consen 310 SNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN 350 (717)
T ss_pred ccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch
Confidence 1 1123556666654 4788998888777777665
No 326
>KOG2021|consensus
Probab=28.46 E-value=7e+02 Score=26.02 Aligned_cols=54 Identities=9% Similarity=0.297 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHhhHHHHHHhchhhh-HhhHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy14015 209 DTPMVRRAAAGKLGELAKVVEVDYL-KTDIIPMFVNLAQDEQDSVRLLAVEACVSIA 264 (318)
Q Consensus 209 ~~~~VR~~aa~~L~~l~~~~~~~~~-~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~ 264 (318)
.++.+-..+..+.|.+...+.-.-+ .+..+|.+..+++ ...+|.+|+.++-.+.
T Consensus 205 ~npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~--ieelR~aac~cilaiV 259 (980)
T KOG2021|consen 205 VNPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFLN--IEELRIAACNCILAIV 259 (980)
T ss_pred CCchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 3778888888888888876654433 2347777777776 6778988888766654
No 327
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=28.16 E-value=3.7e+02 Score=22.71 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=12.0
Q ss_pred CCCHHHHHHHHHhhHHHHHHhchhh
Q psy14015 208 DDTPMVRRAAAGKLGELAKVVEVDY 232 (318)
Q Consensus 208 D~~~~VR~~aa~~L~~l~~~~~~~~ 232 (318)
+++...|+.+=.++|.....+|++.
T Consensus 52 ~~~f~~~~~~e~~lgaAi~amGpe~ 76 (198)
T PF08161_consen 52 SEDFSFRKELEQVLGAAIRAMGPEQ 76 (198)
T ss_pred CCCcchHHHHHHHHHHHHHHCCHHH
Confidence 3444445555555555555555443
No 328
>COG2733 Predicted membrane protein [Function unknown]
Probab=27.75 E-value=5.3e+02 Score=24.42 Aligned_cols=95 Identities=12% Similarity=0.184 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHhhCCh----hHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCc
Q psy14015 106 VRDKAVESLRLISAQHSP----HDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTP 181 (318)
Q Consensus 106 VR~~a~~~l~~l~~~~~~----~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 181 (318)
|+.++.+-+-.+.. .+. .++...+..++.+|-+||...-|..+...-- . ..+ .+..++.
T Consensus 234 I~~a~~~~~D~v~~-~p~h~~rk~~~R~~~~~i~~L~~Dp~~~~r~e~iK~~~--~---~~~-------~i~~~~~---- 296 (415)
T COG2733 234 ISDAVNSFLDEVRR-DPDHKMRKDFDRFLFDLIDDLYHDPGMAARAEAIKSYL--K---EDE-------AIATAAG---- 296 (415)
T ss_pred HHHHHHHHHHHHHh-CcCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--h---cCh-------HHHHHHH----
Confidence 66666655555554 222 3445556777778888876555544422110 0 000 0111000
Q ss_pred ccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHh
Q psy14015 182 MQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVV 228 (318)
Q Consensus 182 ~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~ 228 (318)
+.+..+-..+..=.++++..+|+-.+..+..+++.+
T Consensus 297 -----------~~w~~~~~~l~~D~e~~~s~l~~~l~~~~~~~Ge~l 332 (415)
T COG2733 297 -----------DMWTSLSEWLKEDYESEDSMLRKRLARAVQSVGEEL 332 (415)
T ss_pred -----------HHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHH
Confidence 123334455556667888999998888888887654
No 329
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=27.39 E-value=5.6e+02 Score=24.60 Aligned_cols=113 Identities=9% Similarity=0.085 Sum_probs=59.9
Q ss_pred HHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHH
Q psy14015 34 IKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVE 112 (318)
Q Consensus 34 ~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~ 112 (318)
++.+-.+....+.+++.++++-.+..++.++.. ++.-.-..+. .++. .-|.+. ++..++..|...|..
T Consensus 55 ~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~-------~~~~---~~~fl~-lL~~~d~~i~~~a~~ 123 (429)
T cd00256 55 VKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALL-------KKKT---WEPFFN-LLNRQDQFIVHMSFS 123 (429)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhc-------cccc---hHHHHH-HHcCCchhHHHHHHH
Confidence 333333444455566777777777777766544 4332211110 1111 223333 556678899999999
Q ss_pred HHHHHHhhCCh---hHHhhhHHHHHHHhhcCC-Cchhhhhhhhhhhhhc
Q psy14015 113 SLRLISAQHSP---HDLEAHFVPLVQRLASGD-WFTSRTSACGLFSVCY 157 (318)
Q Consensus 113 ~l~~l~~~~~~---~~~~~~ilp~~~~l~~d~-~~~vR~~a~~~l~~~~ 157 (318)
.+..+...-.. ......+.+.+.+.+... +......++..+..++
T Consensus 124 iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL 172 (429)
T cd00256 124 ILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLL 172 (429)
T ss_pred HHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHh
Confidence 99998765322 222333555565555432 3444555556665443
No 330
>KOG2229|consensus
Probab=27.38 E-value=6.1e+02 Score=25.02 Aligned_cols=97 Identities=13% Similarity=0.131 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhcccc
Q psy14015 208 DDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQI 287 (318)
Q Consensus 208 D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~ 287 (318)
-+..++|.....-++.+...- +-+.=.+.|+|.+.+......|-+..+.+....-..++++..+..+-.+.-.+++|.
T Consensus 249 ~er~E~klm~~~lisRliG~H--kL~l~~fY~fl~~yl~phqrDvTqIl~~aaQa~Hd~VP~d~iEpl~k~Ian~FVtD~ 326 (616)
T KOG2229|consen 249 KERFEVKLMLMKLISRLIGIH--KLFLFGFYPFLQRYLQPHQRDVTQILAAAAQASHDLVPPDIIEPLLKTIANNFVTDE 326 (616)
T ss_pred hhhHHHHHHHHHHHHHHhhhh--HHHHhhhHHHHHHHcCcchhhHHHHHHHHHHhccCCCChHHhhHHHHHHHHHhcccC
Confidence 345677777766666655421 112335889999999999998888766655544455566655555555555566763
Q ss_pred ccccccCCCCCCchhhHHhhhhhhh
Q psy14015 288 VDHKFCPNNEFHPLELHVISATTLR 312 (318)
Q Consensus 288 ~~~~~~~~~~~~~Vr~~~i~~~~~~ 312 (318)
+. +|.--|.+++|+-+..|
T Consensus 327 ~s------pEv~~vgiN~iREic~R 345 (616)
T KOG2229|consen 327 NS------PEVMAVGINAIREICER 345 (616)
T ss_pred CC------cceeehhhhHHHHHHhh
Confidence 32 35566778888776655
No 331
>KOG0904|consensus
Probab=27.37 E-value=1e+02 Score=32.14 Aligned_cols=34 Identities=38% Similarity=0.361 Sum_probs=27.5
Q ss_pred CchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhh
Q psy14015 101 VEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLA 138 (318)
Q Consensus 101 d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~ 138 (318)
=+|+.||..|+.+| ++++++++..++++++..+-
T Consensus 622 ypD~~VR~fAV~~L----~~Lsdd~l~~YLLqLVQalK 655 (1076)
T KOG0904|consen 622 YPDPNVRAFAVRCL----EQLSDDDLLQYLLQLVQALK 655 (1076)
T ss_pred CCcHHHHHHHHHHH----HhcChhHHHHHHHHHHHHHh
Confidence 35789999999998 56778888888888887653
No 332
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=27.28 E-value=6.9e+02 Score=25.57 Aligned_cols=150 Identities=16% Similarity=0.129 Sum_probs=86.4
Q ss_pred hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHHHHHHHHHHHcccccCcCcccchhccch
Q psy14015 14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLP 93 (318)
Q Consensus 14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~VR~~aa~~L~~l~~~~~~~~~~~~llp 93 (318)
.|..++..|.+.+..+...+-..+.+....--.......|+.++.+--. ..++..|..+ +.+. ...++.
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~t~s------~~~~~il~~~----~~P~-~K~~~~ 73 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDYYLSTNS------QRALEILVGV----QEPH-DKHLFD 73 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHHHhhcCc------HHHHHHHHhc----CCcc-HHHHHH
Confidence 3778888899988888766666666654331111234455555432221 1222333322 2232 244777
Q ss_pred HHhhhccCchhHHHHHHHHHHHHHHhhCChh--HHhh-hHHHHH-HHhhcCCCchhhhhhhhhhhhhccccCcchH---H
Q psy14015 94 PLESLATVEETVVRDKAVESLRLISAQHSPH--DLEA-HFVPLV-QRLASGDWFTSRTSACGLFSVCYPRVTAGVK---A 166 (318)
Q Consensus 94 ~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~-~ilp~~-~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~---~ 166 (318)
.+...+..+ .-|..++.-|+.++..-+.- .+.+ .+++-+ +-|..|.+..+=..|+..|-.+++.++.... .
T Consensus 74 ~l~~~~~~~--~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~ 151 (668)
T PF04388_consen 74 KLNDYFVKP--SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLP 151 (668)
T ss_pred HHHHHHcCc--hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHH
Confidence 777777764 56778888888888764442 2222 244444 4456677777777787777777777765433 4
Q ss_pred HHHHHHHhhc
Q psy14015 167 ELRSHFRNLC 176 (318)
Q Consensus 167 ~l~~~~~~l~ 176 (318)
++..+|..++
T Consensus 152 ~Lf~If~Rl~ 161 (668)
T PF04388_consen 152 DLFNIFGRLL 161 (668)
T ss_pred HHHHHHHHHH
Confidence 5555666555
No 333
>KOG4524|consensus
Probab=26.50 E-value=4.1e+02 Score=28.23 Aligned_cols=93 Identities=12% Similarity=0.044 Sum_probs=65.9
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh-----hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCCh-
Q psy14015 196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY-----LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ- 269 (318)
Q Consensus 196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~-----~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~- 269 (318)
..++..-..++.+++-.+|-.+...|.-....+.... ......|.+..-+.+.++-+=..|..++.+++..-|.
T Consensus 802 ~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDF 881 (1014)
T KOG4524|consen 802 LKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDF 881 (1014)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhH
Confidence 3456666888999999999999988876666554321 1233455555556667776666667788887776665
Q ss_pred --hhhhHhhHHHHHHhccccc
Q psy14015 270 --SDVEQLVMPTLRQCSVQIV 288 (318)
Q Consensus 270 --~~~~~~l~p~l~~ll~D~~ 288 (318)
..+.+.++|-+.+++.|..
T Consensus 882 v~sR~l~dvlP~l~~~~~~~~ 902 (1014)
T KOG4524|consen 882 VASRFLEDVLPWLKHLCQDSF 902 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999854
No 334
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=26.45 E-value=7.5e+02 Score=25.76 Aligned_cols=129 Identities=17% Similarity=0.113 Sum_probs=72.7
Q ss_pred hhccchHHhhhc-----cCch-hHHHH--HHHHHHHHHHhhCCh----hHH-hhhHHHHHHHhhcCCCchhhhhhhhhhh
Q psy14015 88 VHCLLPPLESLA-----TVEE-TVVRD--KAVESLRLISAQHSP----HDL-EAHFVPLVQRLASGDWFTSRTSACGLFS 154 (318)
Q Consensus 88 ~~~llp~l~~l~-----~d~~-~~VR~--~a~~~l~~l~~~~~~----~~~-~~~ilp~~~~l~~d~~~~vR~~a~~~l~ 154 (318)
.+.+++.+...+ ++.+ +..|. .|+..+..+....++ +.. ...+++++.-.++++.-..|.-||+.+.
T Consensus 406 fqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is 485 (970)
T COG5656 406 FQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIS 485 (970)
T ss_pred hhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHH
Confidence 455555554443 3333 44443 466666665553322 233 3357777777778887667777777766
Q ss_pred hhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch-hhh
Q psy14015 155 VCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV-DYL 233 (318)
Q Consensus 155 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~-~~~ 233 (318)
++-..+++. ....++.....+.++|.+-.||-.||-++.-+...-.. +.+
T Consensus 486 ~~eeDfkd~-----------------------------~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~ 536 (970)
T COG5656 486 TIEEDFKDN-----------------------------GILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKF 536 (970)
T ss_pred HHHHhcccc-----------------------------hHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHH
Confidence 542222211 12244556667778888888999999998887754322 223
Q ss_pred HhhHHHHHHHhh
Q psy14015 234 KTDIIPMFVNLA 245 (318)
Q Consensus 234 ~~~llp~l~~ll 245 (318)
.+++-+...+++
T Consensus 537 sahVp~tmekLL 548 (970)
T COG5656 537 SAHVPETMEKLL 548 (970)
T ss_pred HhhhhHHHHHHH
Confidence 333444555554
No 335
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=26.38 E-value=2.9e+02 Score=20.88 Aligned_cols=70 Identities=14% Similarity=0.106 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhc-CCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHH-HHHHHHHHHHHHHhhC
Q psy14015 196 AELRSHFRNLCQ-DDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDS-VRLLAVEACVSIASLL 267 (318)
Q Consensus 196 ~~ll~~l~~l~~-D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~-VR~aa~~~l~~l~~~l 267 (318)
..++|.+.+.++ ...++.|-++..-++.++....=+. +-+-...+..+++.... ..+.+..++..+++.-
T Consensus 5 ~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~--~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 5 PRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSD--EVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcH--HHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 568899999988 7789999999999999998654211 11223344444444332 2233445566666433
No 336
>KOG3036|consensus
Probab=25.07 E-value=4.9e+02 Score=23.13 Aligned_cols=38 Identities=8% Similarity=0.134 Sum_probs=24.7
Q ss_pred HhhhHHHHHHHhhcCC-CchhhhhhhhhhhhhccccCcc
Q psy14015 126 LEAHFVPLVQRLASGD-WFTSRTSACGLFSVCYPRVTAG 163 (318)
Q Consensus 126 ~~~~ilp~~~~l~~d~-~~~vR~~a~~~l~~~~~~~~~~ 163 (318)
+..++.|++..-.++. ....|.++.+.+|.+...-.++
T Consensus 121 iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~e 159 (293)
T KOG3036|consen 121 IPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQE 159 (293)
T ss_pred ChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHH
Confidence 4445777776655553 4678999888888766544433
No 337
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=23.31 E-value=5.8e+02 Score=23.38 Aligned_cols=207 Identities=14% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHhcCccHH-HHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHHHHHHHHHHHcccccCcCcccchhccch
Q psy14015 15 IAVLIDELKNEDVQ-LRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLP 93 (318)
Q Consensus 15 i~~l~~~l~~~~~~-~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~VR~~aa~~L~~l~~~~~~~~~~~~llp 93 (318)
..+.+..|-|+..+ .|.+++..|.. +.=..+|+|++..... ..+.+.|+.+ .....++.
T Consensus 199 F~kvisal~dEs~~~~r~aAl~sLr~-------dsGlhQLvPYFi~f~~------eqit~Nl~nl-------~~LtTv~~ 258 (450)
T COG5095 199 FDKVISALLDESDEQTRDAALESLRN-------DSGLHQLVPYFIHFFN------EQITKNLKNL-------EKLTTVVM 258 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-------CccHHHHHHHHHHHHH------HHHHHhhhhH-------HHHHHHHH
Q ss_pred HHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCC----chhhhhhhhhhhhhccccCcchHHHHH
Q psy14015 94 PLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDW----FTSRTSACGLFSVCYPRVTAGVKAELR 169 (318)
Q Consensus 94 ~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~----~~vR~~a~~~l~~~~~~~~~~~~~~l~ 169 (318)
.+..|++++.-.|--..-..+..+. -.=+-+++.+++. +..|-.|+.+++-.+.+++...+.--
T Consensus 259 m~~sLL~N~~iFvdPY~hqlmPSil-----------Tcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLk- 326 (450)
T COG5095 259 MYSSLLKNKYIFVDPYLHQLMPSIL-----------TCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLK- 326 (450)
T ss_pred HHHHHhcCCceeecHHHHHHHHHHH-----------HHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhc-
Q ss_pred HHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCC--HHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhc-
Q psy14015 170 SHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDT--PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQ- 246 (318)
Q Consensus 170 ~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~--~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~- 246 (318)
..+...+.+.+-|.+ ..-...|.+++.-+.. ..+..+..
T Consensus 327 --------------------------PRvtrTllKafLD~~k~~sT~YGalkgls~l~k------------e~ir~~i~p 368 (450)
T COG5095 327 --------------------------PRVTRTLLKAFLDREKTESTQYGALKGLSILSK------------EVIRTVIKP 368 (450)
T ss_pred --------------------------hHHHHHHHHHHHhcccccchhhhhhhhhhhhch------------hheeeeecc
Q ss_pred CCcHHHHHHHHHHHHHHHhhC--ChhhhhHhhHHHHHHhccccccccccCCCCCCchh
Q psy14015 247 DEQDSVRLLAVEACVSIASLL--SQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLE 302 (318)
Q Consensus 247 D~~~~VR~aa~~~l~~l~~~l--~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr 302 (318)
.-+.++|... +.+...-+-. ....+...+...++-+-+| .-|+-|
T Consensus 369 n~~~y~rlv~-ktle~~~e~~~~e~n~~vd~l~dalliL~~d----------~Lpnqr 415 (450)
T COG5095 369 NADYYVRLVN-KTLEKGNEEEIYENNRVVDLLKDALLILQSD----------GLPNQR 415 (450)
T ss_pred chHHHHHHHH-HHHhccchhhcccchHHHHHHHHHHHHHhcc----------CCCCcc
No 338
>KOG1926|consensus
Probab=23.03 E-value=5.7e+02 Score=27.64 Aligned_cols=69 Identities=17% Similarity=0.041 Sum_probs=50.0
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy14015 195 KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIA 264 (318)
Q Consensus 195 ~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~ 264 (318)
.+..+..|.++..+ ...+|.+++..|-.--..+.........+.-+.+-+.+....+|.++..++..+.
T Consensus 72 ~k~~ldlf~klas~-l~~~r~~aa~~Ll~~lq~~~~ae~~~YvL~RLIrg~ss~resaRlgfs~~Ltev~ 140 (1129)
T KOG1926|consen 72 IKEKLDLFTKLASS-LRPVRLAAAFQLLADLQELRDAEELSYVLNRLIRGLSSDRESARLGFSLILTEVL 140 (1129)
T ss_pred chHHHHHHHHHHhh-cHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhh
Confidence 35667788888776 8889998888887766655433334556666666667888889999888887777
No 339
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=22.98 E-value=2.6e+02 Score=22.84 Aligned_cols=71 Identities=11% Similarity=0.123 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHHHHhhCCh--hHHh-hhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHH
Q psy14015 103 ETVVRDKAVESLRLISAQHSP--HDLE-AHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFR 173 (318)
Q Consensus 103 ~~~VR~~a~~~l~~l~~~~~~--~~~~-~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~ 173 (318)
+..|-..|+..|-.++...+. ..+. +.-++.+...+++.+..++..|..++..++.+.++.-|+++++.+.
T Consensus 73 d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~~~l~ 146 (160)
T PF11841_consen 73 DASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIAETLS 146 (160)
T ss_pred cchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 567777777777777765433 1122 2234555555666778899999999988888877777777766654
No 340
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=22.43 E-value=1.2e+02 Score=24.24 Aligned_cols=48 Identities=17% Similarity=0.164 Sum_probs=32.8
Q ss_pred hccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCC
Q psy14015 89 HCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGD 141 (318)
Q Consensus 89 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~ 141 (318)
+.+..++..++.+++..|+..|++++...-.. .+ ..+-..+.+|+.|.
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~~----~l-~pY~d~L~~Lldd~ 63 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWKDP----YL-TPYKDNLENLLDDK 63 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH----HH-HhHHHHHHHHcCcc
Confidence 44667788999999999999999998886542 11 11233455566665
No 341
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=22.42 E-value=5.5e+02 Score=22.75 Aligned_cols=58 Identities=19% Similarity=0.219 Sum_probs=42.0
Q ss_pred chHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh-hhHhhHHHHHHHhhcCCcHH
Q psy14015 194 VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD-YLKTDIIPMFVNLAQDEQDS 251 (318)
Q Consensus 194 ~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~-~~~~~llp~l~~ll~D~~~~ 251 (318)
..-+++-.+..++...-.-+|..+...|..+......+ ....+++..+.++++.+.|.
T Consensus 185 ~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~~~ 243 (262)
T PF14225_consen 185 HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTDLWM 243 (262)
T ss_pred hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCccHH
Confidence 44567777888888888889998888888888765422 23456777777888887765
No 342
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=22.30 E-value=5.2e+02 Score=25.78 Aligned_cols=72 Identities=10% Similarity=0.081 Sum_probs=45.9
Q ss_pred chHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh----hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHh
Q psy14015 194 VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD----YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIAS 265 (318)
Q Consensus 194 ~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~----~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~ 265 (318)
....++..+.++....+...|+...+-+-.+.-.+..+ ....-=+..+..+.+||.|.|+..+...+.++.-
T Consensus 470 L~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 470 LEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred HHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 45677788877776555566666666555444333222 1111123346688999999999999888888764
No 343
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=22.27 E-value=3.2e+02 Score=22.10 Aligned_cols=31 Identities=19% Similarity=0.163 Sum_probs=22.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHhhHHHHHHhc
Q psy14015 199 RSHFRNLCQDDTPMVRRAAAGKLGELAKVVE 229 (318)
Q Consensus 199 l~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~ 229 (318)
+..++.++.+++..+...|+..|....-.++
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~TlLvyD 126 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNTLLVYD 126 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT--TTCC
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhHHHHh
Confidence 7889999988889999999999988776554
No 344
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=22.25 E-value=2.1e+02 Score=21.70 Aligned_cols=28 Identities=14% Similarity=0.251 Sum_probs=23.4
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHH
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIAL 42 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~ 42 (318)
|.-++.+|.|++..++..|++.|.+.+.
T Consensus 10 i~lLv~QL~D~~~~V~~~A~~iL~e~c~ 37 (115)
T PF14663_consen 10 IELLVTQLYDPSPEVVAAALEILEEACE 37 (115)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 6678889999999998888988888763
No 345
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=21.69 E-value=6.2e+02 Score=23.05 Aligned_cols=37 Identities=11% Similarity=-0.093 Sum_probs=32.1
Q ss_pred chHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch
Q psy14015 194 VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV 230 (318)
Q Consensus 194 ~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~ 230 (318)
..+.++..+...+++.+.+|-..+...+..+...+..
T Consensus 162 ~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 162 QFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 4467888899999999999999999999999987755
No 346
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=21.19 E-value=2.5e+02 Score=28.81 Aligned_cols=140 Identities=18% Similarity=0.076 Sum_probs=74.7
Q ss_pred cCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHH-HHHHHHHhhc--CCCHHHHH
Q psy14015 139 SGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAE-LRSHFRNLCQ--DDTPMVRR 215 (318)
Q Consensus 139 ~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~-ll~~l~~l~~--D~~~~VR~ 215 (318)
.+.+..+|..++..+.++..+++|.....+.+ +..... +. .+.++..-|+ +.++.+..
T Consensus 256 Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~----ii~~~~---------------en~~~s~l~~~cdii~tnel~w~ 316 (993)
T COG5234 256 SSIDSFVRFSAAKGLAKIISRLPWNLAESFID----IIELMT---------------ENMFLSPLENTCDIIITNELVWH 316 (993)
T ss_pred ccccHHHHHHHHhhHHHHHhhcccccHHHHHH----HHHhcc---------------cccchhhhhCccceeecchHHHH
Confidence 34457799999999999999999976554433 222211 22 2233333332 45667777
Q ss_pred HHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcH--------HHHHHHHHHHHHHHhhCCh---hhhhHhhHHHHHH-h
Q psy14015 216 AAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQD--------SVRLLAVEACVSIASLLSQ---SDVEQLVMPTLRQ-C 283 (318)
Q Consensus 216 ~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~--------~VR~aa~~~l~~l~~~l~~---~~~~~~l~p~l~~-l 283 (318)
.++.-++ ++...+-+....-+.|++.+-++-+.. .+|.+++.-+=.+...-++ +.-+..++-.+++ .
T Consensus 317 ~~i~~~a-la~~~~id~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~a 395 (993)
T COG5234 317 GAILFFA-LAGAGLIDYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTA 395 (993)
T ss_pred HHHHHHH-HhhccccchhhhhhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhh
Confidence 7777666 555433332222266666655544433 4555544322222221111 1123445555555 7
Q ss_pred ccccccccccCCCCCCchhhHHhhh
Q psy14015 284 SVQIVDHKFCPNNEFHPLELHVISA 308 (318)
Q Consensus 284 l~D~~~~~~~~~~~~~~Vr~~~i~~ 308 (318)
+-| +.=+||.....+
T Consensus 396 lFD----------pel~vRr~a~Aa 410 (993)
T COG5234 396 LFD----------PELNVRRAATAA 410 (993)
T ss_pred hcC----------chhhhhhHHHHH
Confidence 888 666777665543
No 347
>KOG3961|consensus
Probab=21.17 E-value=3.6e+02 Score=23.38 Aligned_cols=88 Identities=14% Similarity=0.061 Sum_probs=0.0
Q ss_pred hHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcC
Q psy14015 129 HFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQD 208 (318)
Q Consensus 129 ~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D 208 (318)
.++|.+..-+.+-....|..|-.-+..++-...+.+-.-+ .+|+..+...+..
T Consensus 114 ~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVL---------------------------PqLI~plK~al~t 166 (262)
T KOG3961|consen 114 PYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVL---------------------------PQLILPLKAALVT 166 (262)
T ss_pred HHHHHHhhhhhhcCCCcchhhhhcHHHHHHhccccccccc---------------------------HHHHHHHHHHHhh
Q ss_pred CCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhh
Q psy14015 209 DTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLA 245 (318)
Q Consensus 209 ~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll 245 (318)
.+.+|-..+.+.|..+...-|- +...++|++.+++
T Consensus 167 rd~ev~~~~Lkvlq~lv~~~~~--vG~aLVPfYRQlL 201 (262)
T KOG3961|consen 167 RDDEVICRTLKVLQQLVVSVGC--VGAALVPFYRQLL 201 (262)
T ss_pred ccHHHHHHHHHHHHHHHHhccc--cchhhhhHHHHhh
No 348
>KOG2122|consensus
Probab=21.11 E-value=2.8e+02 Score=31.19 Aligned_cols=72 Identities=18% Similarity=0.200 Sum_probs=45.8
Q ss_pred HHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCC
Q psy14015 130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDD 209 (318)
Q Consensus 130 ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~ 209 (318)
.+..+.+.+++.+..+=.++|+.|-.+..+-... ++.+ +....++.+..+....
T Consensus 531 CLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~D-Qq~L-------------------------wD~gAv~mLrnLIhSK 584 (2195)
T KOG2122|consen 531 CLQTLLQHLKSHSLTIVSNACGTLWNLSARSPED-QQML-------------------------WDDGAVPMLRNLIHSK 584 (2195)
T ss_pred HHHHHHHHhhhcceEEeecchhhhhhhhcCCHHH-HHHH-------------------------HhcccHHHHHHHHhhh
Confidence 5677777888888888888888876665443321 1111 1223457777777777
Q ss_pred CHHHHHHHHHhhHHHHHH
Q psy14015 210 TPMVRRAAAGKLGELAKV 227 (318)
Q Consensus 210 ~~~VR~~aa~~L~~l~~~ 227 (318)
+..+-...+.+|-.+..+
T Consensus 585 hkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 585 HKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred hhhhhhhHHHHHHHHhcC
Confidence 777766666666666553
No 349
>KOG1926|consensus
Probab=20.98 E-value=1.1e+03 Score=25.67 Aligned_cols=66 Identities=17% Similarity=-0.008 Sum_probs=42.6
Q ss_pred cchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhc
Q psy14015 91 LLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCY 157 (318)
Q Consensus 91 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~ 157 (318)
.+.++..+..+ +..||.+|+.+|..-.+.+.......+.+..+.+-+.+....+|.+.+.+++.+.
T Consensus 75 ~ldlf~klas~-l~~~r~~aa~~Ll~~lq~~~~ae~~~YvL~RLIrg~ss~resaRlgfs~~Ltev~ 140 (1129)
T KOG1926|consen 75 KLDLFTKLASS-LRPVRLAAAFQLLADLQELRDAEELSYVLNRLIRGLSSDRESARLGFSLILTEVL 140 (1129)
T ss_pred HHHHHHHHHhh-cHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhh
Confidence 45566666555 7888888888887777666544444444444444444555678887777777655
No 350
>PRK04330 hypothetical protein; Provisional
Probab=20.19 E-value=3.5e+02 Score=19.66 Aligned_cols=71 Identities=10% Similarity=0.111 Sum_probs=39.3
Q ss_pred hHHhhhHHHHHHHhhcCCC--chhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHH
Q psy14015 124 HDLEAHFVPLVQRLASGDW--FTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSH 201 (318)
Q Consensus 124 ~~~~~~ilp~~~~l~~d~~--~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~ 201 (318)
+......+..+.+..+|.+ ..+|.+|-+....+.. ....|.||. ...+..
T Consensus 8 e~~ik~~~~~L~~I~~D~sVPRNIRraa~ea~~~L~~------------------e~~~~~vRa----------A~AIs~ 59 (88)
T PRK04330 8 EEKIKQAIQMLEEIINDTSVPRNIRRAATEAKEILLN------------------EEESPGVRA----------ATAISI 59 (88)
T ss_pred HHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhC------------------cCcchhHHH----------HHHHHH
Confidence 3344446667777888864 3477766554332211 111233333 456777
Q ss_pred HHHhhcCCC--HHHHHHHHHhhH
Q psy14015 202 FRNLCQDDT--PMVRRAAAGKLG 222 (318)
Q Consensus 202 l~~l~~D~~--~~VR~~aa~~L~ 222 (318)
+-...+|++ .+.|-.+-..++
T Consensus 60 LdeIs~DPNmP~h~RT~IW~ivS 82 (88)
T PRK04330 60 LDEISNDPNMPLHTRTLIWNIVS 82 (88)
T ss_pred HHHhhcCCCCChHHHHHHHHHHH
Confidence 778888887 456654444443
Done!