Query psy14015
Match_columns 318
No_of_seqs 125 out of 1301
Neff 8.9
Searched_HMMs 29240
Date Fri Aug 16 17:22:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14015.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14015hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b3u_A Protein (protein phosph 100.0 1.8E-30 6.2E-35 252.9 26.3 292 7-308 4-304 (588)
2 1b3u_A Protein (protein phosph 99.9 3.1E-26 1.1E-30 222.9 22.1 281 18-308 169-464 (588)
3 4fdd_A Transportin-1; heat rep 99.8 3.6E-18 1.2E-22 174.1 18.3 280 17-308 94-423 (852)
4 4fdd_A Transportin-1; heat rep 99.8 6.6E-17 2.3E-21 164.7 23.6 291 9-309 124-466 (852)
5 1oyz_A Hypothetical protein YI 99.8 5E-17 1.7E-21 144.2 19.0 235 14-286 24-263 (280)
6 1ibr_B P95, importin beta-1 su 99.7 1.1E-16 3.9E-21 150.8 21.4 277 14-308 129-431 (462)
7 2bpt_A Importin beta-1 subunit 99.7 1.2E-16 4.1E-21 162.1 21.6 281 16-307 98-433 (861)
8 3ltm_A Alpha-REP4; protein eng 99.7 1.1E-16 3.9E-21 135.9 15.8 189 12-269 18-207 (211)
9 3ltj_A Alpharep-4; protein eng 99.7 2E-16 6.8E-21 133.4 16.5 184 13-265 14-198 (201)
10 1u6g_C TIP120 protein, CAND1; 99.7 6.2E-16 2.1E-20 163.3 19.0 283 15-308 50-397 (1230)
11 1qgr_A Protein (importin beta 99.7 3.7E-16 1.3E-20 158.8 16.6 278 18-307 95-430 (876)
12 3ltm_A Alpha-REP4; protein eng 99.7 6.9E-16 2.4E-20 131.0 14.9 179 51-308 18-197 (211)
13 2jdq_A Importin alpha-1 subuni 99.7 6.4E-15 2.2E-19 138.5 21.9 259 14-308 108-384 (450)
14 2bpt_A Importin beta-1 subunit 99.7 6.9E-15 2.4E-19 149.2 23.6 257 15-308 226-523 (861)
15 1qgr_A Protein (importin beta 99.7 6.3E-15 2.1E-19 149.7 22.7 283 14-307 129-472 (876)
16 2qk2_A LP04448P; mini spindles 99.7 1.7E-15 5.8E-20 131.8 15.6 192 49-273 12-213 (242)
17 3ltj_A Alpharep-4; protein eng 99.7 1.6E-15 5.5E-20 127.8 14.9 180 50-308 12-192 (201)
18 1ibr_B P95, importin beta-1 su 99.7 1.3E-15 4.6E-20 143.4 15.9 245 17-290 94-381 (462)
19 1oyz_A Hypothetical protein YI 99.7 1.9E-15 6.6E-20 133.9 15.1 219 14-260 55-277 (280)
20 1u6g_C TIP120 protein, CAND1; 99.6 4.2E-15 1.4E-19 157.0 20.1 258 15-309 257-593 (1230)
21 2jdq_A Importin alpha-1 subuni 99.6 3.4E-15 1.1E-19 140.4 16.6 282 15-306 22-339 (450)
22 2qk2_A LP04448P; mini spindles 99.6 5.4E-15 1.8E-19 128.6 14.7 184 17-231 19-210 (242)
23 1wa5_B Importin alpha subunit; 99.6 5.2E-15 1.8E-19 142.9 15.9 284 14-308 88-406 (530)
24 1wa5_B Importin alpha subunit; 99.6 2.3E-14 7.9E-19 138.4 20.2 258 15-308 175-451 (530)
25 4b8j_A Importin subunit alpha- 99.6 2E-13 6.8E-18 131.6 19.7 255 13-306 74-350 (528)
26 4b8j_A Importin subunit alpha- 99.5 7.1E-13 2.4E-17 127.7 21.5 258 14-308 161-437 (528)
27 4hxt_A De novo protein OR329; 99.5 5.7E-13 2E-17 115.1 18.9 231 13-269 2-245 (252)
28 1lrv_A LRV, leucine-rich repea 99.5 2.7E-15 9.2E-20 130.3 2.2 183 20-309 57-241 (244)
29 4db8_A Armadillo-repeat protei 99.5 4.2E-13 1.4E-17 116.5 15.8 227 11-264 10-250 (252)
30 2vgl_B AP-2 complex subunit be 99.5 8.9E-13 3E-17 129.2 19.0 108 9-122 82-192 (591)
31 1w63_A Adapter-related protein 99.5 2.5E-13 8.5E-18 133.8 14.2 251 5-264 99-378 (618)
32 4hxt_A De novo protein OR329; 99.4 6E-12 2.1E-16 108.7 16.9 218 54-308 4-235 (252)
33 2vgl_B AP-2 complex subunit be 99.4 3.4E-12 1.2E-16 125.0 16.4 245 14-309 14-263 (591)
34 2qk1_A Protein STU2; STU2P, XM 99.4 7.2E-12 2.5E-16 109.5 16.6 192 55-273 19-228 (249)
35 2qk1_A Protein STU2; STU2P, XM 99.4 1.8E-12 6.2E-17 113.3 12.6 200 17-244 20-234 (249)
36 3tpo_A Importin subunit alpha- 99.4 5E-11 1.7E-15 115.1 21.8 257 14-307 163-442 (529)
37 3ul1_B Importin subunit alpha- 99.4 2.5E-11 8.6E-16 116.8 18.3 258 14-308 144-424 (510)
38 4db8_A Armadillo-repeat protei 99.3 1E-11 3.4E-16 107.8 12.9 217 53-308 13-245 (252)
39 3ul1_B Importin subunit alpha- 99.3 3.2E-11 1.1E-15 116.0 15.5 282 14-307 58-380 (510)
40 4db6_A Armadillo repeat protei 99.3 5.4E-11 1.9E-15 100.2 14.8 190 50-265 10-209 (210)
41 2vgl_A Adaptor protein complex 99.3 1.1E-10 3.8E-15 114.9 19.0 286 5-310 103-429 (621)
42 1jdh_A Beta-catenin; beta-cate 99.3 1.8E-11 6.1E-16 117.4 12.9 253 15-308 229-524 (529)
43 1lrv_A LRV, leucine-rich repea 99.3 1.8E-12 6.1E-17 112.5 5.1 163 17-261 78-242 (244)
44 1jdh_A Beta-catenin; beta-cate 99.3 2E-10 6.7E-15 110.1 18.7 260 11-306 15-287 (529)
45 2z6h_A Catenin beta-1, beta-ca 99.3 3.6E-10 1.2E-14 111.6 20.5 258 13-306 14-284 (644)
46 4db6_A Armadillo repeat protei 99.2 1.8E-10 6E-15 97.1 15.0 187 87-309 9-204 (210)
47 3tpo_A Importin subunit alpha- 99.2 8.3E-10 2.8E-14 106.6 20.9 255 14-306 77-356 (529)
48 2z6g_A B-catenin; FULL-length, 99.2 5.2E-10 1.8E-14 113.0 19.3 246 15-286 152-410 (780)
49 3l9t_A Putative uncharacterize 99.2 1.6E-10 5.5E-15 98.1 10.5 139 88-266 69-208 (240)
50 2z6g_A B-catenin; FULL-length, 99.2 2.3E-09 7.9E-14 108.2 20.9 270 15-286 194-499 (780)
51 4ady_A RPN2, 26S proteasome re 99.1 8.7E-10 3E-14 111.0 16.5 137 14-162 430-575 (963)
52 3now_A UNC-45 protein, SD10334 99.1 7.4E-09 2.5E-13 103.8 23.1 266 15-286 292-591 (810)
53 3now_A UNC-45 protein, SD10334 99.1 3.3E-09 1.1E-13 106.3 20.2 245 15-286 497-761 (810)
54 1te4_A Conserved protein MTH18 99.1 6.8E-11 2.3E-15 92.7 6.3 117 129-309 12-128 (131)
55 2z6h_A Catenin beta-1, beta-ca 99.1 2.3E-09 7.9E-14 105.8 18.7 245 15-286 58-316 (644)
56 1w63_A Adapter-related protein 99.1 4.6E-09 1.6E-13 103.3 19.9 276 14-311 275-574 (618)
57 1te4_A Conserved protein MTH18 99.1 8.6E-12 2.9E-16 97.9 -0.2 120 89-262 11-130 (131)
58 3l9t_A Putative uncharacterize 99.0 2.5E-09 8.4E-14 90.8 12.4 129 128-306 70-199 (240)
59 2iw3_A Elongation factor 3A; a 99.0 1.3E-08 4.3E-13 103.7 17.4 260 11-308 12-318 (986)
60 3nmw_A APC variant protein; AR 99.0 2.7E-08 9.3E-13 91.1 17.7 218 26-271 97-340 (354)
61 4ady_A RPN2, 26S proteasome re 99.0 4E-08 1.4E-12 99.1 19.8 204 15-267 474-678 (963)
62 2vgl_A Adaptor protein complex 98.9 2.5E-08 8.4E-13 98.1 16.8 235 54-306 113-390 (621)
63 1xm9_A Plakophilin 1; armadill 98.9 5E-08 1.7E-12 92.4 17.9 254 14-306 3-352 (457)
64 4ffb_C Protein STU2; tubulin f 98.9 1.3E-08 4.3E-13 90.0 12.2 193 11-231 8-217 (278)
65 4ffb_C Protein STU2; tubulin f 98.8 1.3E-07 4.6E-12 83.4 16.5 184 54-270 12-217 (278)
66 1xqr_A HSPBP1 protein; armadil 98.8 1.3E-07 4.5E-12 84.4 16.4 168 104-308 54-232 (296)
67 3nmz_A APC variant protein; pr 98.8 2.7E-07 9.2E-12 87.2 18.0 214 26-267 213-452 (458)
68 3nmw_A APC variant protein; AR 98.8 3.2E-07 1.1E-11 83.9 17.9 240 29-306 48-326 (354)
69 1xqr_A HSPBP1 protein; armadil 98.7 1.4E-07 4.6E-12 84.3 13.9 173 67-266 56-239 (296)
70 3l6x_A Catenin delta-1; cateni 98.7 6.7E-07 2.3E-11 86.7 19.8 257 14-306 49-376 (584)
71 3tjz_B Coatomer subunit gamma; 98.7 4.5E-08 1.6E-12 89.2 9.1 241 8-291 99-340 (355)
72 2of3_A ZYG-9; multifunctional 98.7 8E-07 2.7E-11 77.5 16.6 74 196-271 166-242 (266)
73 1xm9_A Plakophilin 1; armadill 98.6 1.1E-06 3.8E-11 83.1 16.9 270 15-287 46-383 (457)
74 3oc3_A Helicase MOT1, MOT1; re 98.6 1.1E-06 3.8E-11 82.9 14.7 220 15-309 176-399 (800)
75 3nmz_A APC variant protein; pr 98.5 4.4E-06 1.5E-10 78.9 18.4 203 67-307 216-443 (458)
76 1wa5_C Importin alpha RE-expor 98.5 4.4E-06 1.5E-10 86.1 19.5 245 24-286 372-652 (960)
77 1wa5_C Importin alpha RE-expor 98.5 2.4E-06 8.4E-11 88.0 17.6 240 27-286 260-559 (960)
78 3tjz_B Coatomer subunit gamma; 98.5 1.4E-07 4.8E-12 85.9 6.7 236 20-309 75-311 (355)
79 2of3_A ZYG-9; multifunctional 98.4 1E-05 3.6E-10 70.4 16.2 176 95-310 51-232 (266)
80 3opb_A SWI5-dependent HO expre 98.4 7E-06 2.4E-10 81.3 16.4 210 52-286 457-708 (778)
81 2db0_A 253AA long hypothetical 98.4 6.1E-05 2.1E-09 61.3 18.8 211 15-265 34-246 (253)
82 3l6x_A Catenin delta-1; cateni 98.4 3.3E-05 1.1E-09 74.9 20.7 249 15-286 135-456 (584)
83 3b2a_A TON_1937, putative unch 98.3 4E-05 1.4E-09 64.7 17.1 211 15-258 35-254 (265)
84 3opb_A SWI5-dependent HO expre 98.3 3.4E-05 1.2E-09 76.5 18.9 252 14-286 458-758 (778)
85 3b2a_A TON_1937, putative unch 98.3 3.8E-05 1.3E-09 64.9 15.1 179 53-264 34-217 (265)
86 2x1g_F Cadmus; transport prote 98.2 2E-05 7E-10 81.1 16.6 151 105-286 436-595 (971)
87 2x1g_F Cadmus; transport prote 98.2 1.1E-05 3.8E-10 83.1 14.5 174 67-272 437-622 (971)
88 3oc3_A Helicase MOT1, MOT1; re 98.2 5.8E-06 2E-10 78.1 9.7 189 27-261 242-432 (800)
89 3m1i_C Exportin-1; heat repeat 98.2 9.1E-05 3.1E-09 77.0 19.9 155 105-286 428-600 (1049)
90 2x19_B Importin-13; nuclear tr 98.1 0.0001 3.6E-09 75.6 18.5 208 30-268 424-652 (963)
91 2db0_A 253AA long hypothetical 98.1 0.00015 5E-09 59.1 14.9 205 51-309 31-241 (253)
92 2x19_B Importin-13; nuclear tr 98.1 0.00036 1.2E-08 71.6 22.0 220 23-270 459-719 (963)
93 3m1i_C Exportin-1; heat repeat 98.0 0.00019 6.7E-09 74.5 18.7 174 67-269 429-622 (1049)
94 2iw3_A Elongation factor 3A; a 98.0 0.00016 5.4E-09 73.9 17.0 218 15-266 97-325 (986)
95 3u0r_A Apoptosis inhibitor 5; 97.9 7.1E-05 2.4E-09 69.6 11.0 258 17-286 33-319 (507)
96 4hat_C Exportin-1; heat repeat 97.8 0.00017 5.7E-09 74.7 12.9 153 91-271 452-624 (1023)
97 4hat_C Exportin-1; heat repeat 97.8 0.00032 1.1E-08 72.5 14.8 132 112-270 435-574 (1023)
98 3ibv_A Exportin-T; karyopherin 97.6 0.00036 1.2E-08 71.9 12.8 100 197-306 440-558 (980)
99 3tt9_A Plakophilin-2; cell adh 97.4 0.0011 3.8E-08 56.6 10.5 171 89-286 7-205 (233)
100 3ibv_A Exportin-T; karyopherin 97.2 0.015 5E-07 60.0 18.8 257 25-307 205-517 (980)
101 3tt9_A Plakophilin-2; cell adh 97.1 0.0029 9.8E-08 54.0 10.3 130 130-285 9-145 (233)
102 3grl_A General vesicular trans 96.6 0.02 6.7E-07 55.6 12.6 133 130-286 123-265 (651)
103 3o2t_A Symplekin; heat repeat, 96.6 0.39 1.3E-05 43.8 21.7 255 15-282 27-318 (386)
104 1vsy_5 Proteasome activator BL 96.6 0.0024 8.4E-08 65.6 6.6 170 90-286 760-949 (997)
105 4gmo_A Putative uncharacterize 96.6 0.0031 1.1E-07 62.5 6.7 69 51-122 34-108 (684)
106 3u0r_A Apoptosis inhibitor 5; 96.4 0.21 7.1E-06 46.6 17.2 142 59-210 36-190 (507)
107 3gjx_A Exportin-1; transport, 96.4 0.028 9.4E-07 58.3 12.6 161 84-272 471-651 (1073)
108 3a6p_A Exportin-5; exportin-5, 96.3 0.12 4E-06 54.5 17.1 218 25-266 108-381 (1204)
109 3gjx_A Exportin-1; transport, 96.3 0.029 9.9E-07 58.2 12.1 126 119-270 467-600 (1073)
110 4gmo_A Putative uncharacterize 96.1 0.0092 3.2E-07 59.1 7.1 90 196-286 34-130 (684)
111 3grl_A General vesicular trans 95.9 0.32 1.1E-05 47.2 16.4 91 196-286 121-219 (651)
112 3a6p_A Exportin-5; exportin-5, 95.7 0.084 2.9E-06 55.6 12.8 225 12-266 10-277 (1204)
113 3gs3_A Symplekin, LD45768P; he 95.6 0.61 2.1E-05 40.1 15.7 99 16-117 18-117 (257)
114 3gs3_A Symplekin, LD45768P; he 95.6 0.19 6.5E-06 43.3 12.3 70 194-265 50-119 (257)
115 1vsy_5 Proteasome activator BL 94.4 0.17 6E-06 52.0 10.1 191 53-265 761-966 (997)
116 2b6c_A Hypothetical protein EF 94.2 0.28 9.5E-06 41.1 9.5 126 20-159 62-189 (220)
117 2b6c_A Hypothetical protein EF 94.0 0.81 2.8E-05 38.2 12.0 67 196-266 123-189 (220)
118 3o2t_A Symplekin; heat repeat, 93.9 0.63 2.2E-05 42.4 11.8 69 194-264 60-128 (386)
119 1lsh_A Lipovitellin (LV-1N, LV 93.6 1.2 4E-05 46.3 14.7 68 196-269 511-580 (1056)
120 3jxy_A Alkylpurine DNA glycosy 93.0 0.88 3E-05 38.3 10.7 131 93-266 64-196 (232)
121 3jxy_A Alkylpurine DNA glycosy 92.3 0.48 1.6E-05 40.0 8.0 127 19-159 67-196 (232)
122 4atg_A TAF6; transcription, TF 91.8 4.6 0.00016 33.0 13.5 71 212-286 105-179 (196)
123 1lsh_A Lipovitellin (LV-1N, LV 91.1 1.8 6.1E-05 44.9 12.3 131 17-154 395-539 (1056)
124 1x5b_A Signal transducing adap 90.1 4.4 0.00015 32.0 11.3 76 196-271 51-131 (163)
125 3ldz_A STAM-1, signal transduc 89.3 3.9 0.00013 31.4 10.1 76 196-271 41-120 (140)
126 3ut4_A CTHE_2751, putative unc 88.7 2.5 8.5E-05 32.3 8.3 84 44-141 24-108 (134)
127 3zyq_A Hepatocyte growth facto 85.4 6.8 0.00023 32.7 10.2 78 195-272 43-125 (226)
128 2fv2_A RCD1 required for cell 83.1 6.6 0.00023 33.5 8.9 72 86-157 97-173 (268)
129 3ut4_A CTHE_2751, putative unc 83.0 2.7 9.3E-05 32.0 5.9 93 12-118 29-129 (134)
130 3g2s_A C-terminal fragment of 79.5 20 0.00067 27.8 11.0 75 196-270 47-131 (149)
131 3ldz_A STAM-1, signal transduc 78.3 19 0.00065 27.5 9.5 77 130-231 43-119 (140)
132 1elk_A Target of MYB1; superhe 74.3 29 0.00098 27.0 9.7 75 196-270 52-135 (157)
133 1x5b_A Signal transducing adap 74.2 20 0.00069 28.1 8.9 77 130-231 53-130 (163)
134 1dvp_A HRS, hepatocyte growth 72.0 35 0.0012 28.0 10.3 75 196-270 41-120 (220)
135 1mhq_A ADP-ribosylation factor 72.0 32 0.0011 26.5 11.0 75 196-270 37-121 (148)
136 1juq_A ADP-ribosylation factor 70.7 37 0.0013 26.8 10.8 76 196-271 49-134 (171)
137 3g2s_A C-terminal fragment of 70.6 34 0.0012 26.4 10.4 76 130-230 49-130 (149)
138 1juq_A ADP-ribosylation factor 62.4 55 0.0019 25.8 9.2 76 130-230 51-132 (171)
139 1upk_A MO25 protein; transfera 62.2 84 0.0029 27.8 12.2 125 101-248 175-313 (341)
140 4atg_A TAF6; transcription, TF 61.0 21 0.00072 29.0 6.5 94 124-248 82-180 (196)
141 1mhq_A ADP-ribosylation factor 60.3 55 0.0019 25.1 9.8 76 130-230 39-120 (148)
142 1t06_A Hypothetical protein; s 59.1 12 0.00042 31.2 5.0 75 91-165 109-187 (235)
143 1t06_A Hypothetical protein; s 56.0 36 0.0012 28.3 7.4 70 198-267 109-182 (235)
144 3dad_A FH1/FH2 domain-containi 55.7 1.1E+02 0.0037 27.0 12.3 156 15-170 120-299 (339)
145 3zyq_A Hepatocyte growth facto 53.5 52 0.0018 27.2 7.9 77 130-231 46-123 (226)
146 1elk_A Target of MYB1; superhe 52.3 79 0.0027 24.4 10.5 76 130-230 54-134 (157)
147 2qzg_A Conserved uncharacteriz 44.8 59 0.002 22.9 5.7 49 94-142 22-73 (94)
148 3gvo_A Pumilio 2, pumilio homo 42.5 96 0.0033 27.2 8.5 35 252-286 311-345 (351)
149 2npp_B PP2A, B subunit, serine 40.5 2.2E+02 0.0076 26.2 15.8 184 91-286 163-376 (449)
150 1ho8_A Vacuolar ATP synthase s 39.8 67 0.0023 29.9 7.0 69 196-264 394-475 (480)
151 3bwt_A Protein PUF4; pumilio, 37.1 2E+02 0.0069 24.7 10.1 12 91-102 120-131 (333)
152 2qzg_A Conserved uncharacteriz 31.2 1.4E+02 0.0047 21.0 8.1 34 120-153 9-44 (94)
153 1dvp_A HRS, hepatocyte growth 29.2 2E+02 0.0069 23.3 7.7 72 134-230 47-119 (220)
154 4f52_E Glomulin; cullin-ring E 27.2 2E+02 0.0069 27.5 8.3 85 92-176 319-413 (596)
155 1ho8_A Vacuolar ATP synthase s 26.8 76 0.0026 29.5 5.0 65 236-310 395-472 (480)
156 3rru_A TOM1L1 protein; structu 26.0 2.1E+02 0.0071 21.9 6.8 75 196-270 52-135 (152)
157 3k49_A MRNA-binding protein PU 24.5 1.1E+02 0.0037 27.1 5.6 15 50-64 62-76 (369)
158 1vdy_A Hypothetical protein (R 24.4 2.3E+02 0.0079 21.4 6.9 27 129-155 49-75 (140)
159 1vsy_4 Proteasome activator BL 22.8 4.2E+02 0.014 26.3 9.9 90 196-286 338-434 (799)
160 1vdy_A Hypothetical protein (R 22.5 78 0.0027 24.1 3.6 37 88-124 47-83 (140)
161 1upk_A MO25 protein; transfera 21.9 4.1E+02 0.014 23.4 18.5 91 196-286 208-312 (341)
162 2fv2_A RCD1 required for cell 21.8 3.7E+02 0.013 22.8 10.3 115 126-265 98-224 (268)
No 1
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.97 E-value=1.8e-30 Score=252.86 Aligned_cols=292 Identities=60% Similarity=0.869 Sum_probs=262.3
Q ss_pred CCCCCCchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHHHHHHHHHHHcccccCcCccc
Q psy14015 7 APDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPE 86 (318)
Q Consensus 7 ~~~~~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~VR~~aa~~L~~l~~~~~~~~ 86 (318)
++|+++.||..+++.++++++.+|..+++.|..++..+|++..+++++|++....+++.+||..+++.|+.+.+.+|++.
T Consensus 4 ~~~~~~~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~~~~~ 83 (588)
T 1b3u_A 4 DGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPE 83 (588)
T ss_dssp CTTTSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGG
T ss_pred ccCCCcCcHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCcHH
Confidence 56899999999999999999999999999999999989998888999999998885555599999999999998888877
Q ss_pred chhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHH
Q psy14015 87 YVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKA 166 (318)
Q Consensus 87 ~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~ 166 (318)
....++|.+..+..|++..||..|.+++..++..++++.....++|.+.++.+++++.+|..++.+++.++...+...+.
T Consensus 84 ~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~ 163 (588)
T 1b3u_A 84 YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKA 163 (588)
T ss_dssp GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHH
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence 78889999999999999999999999999999999988888889999999999999999999999999999888877778
Q ss_pred HHHHHHHhhccCCCcccccchh----hc----Cc-cchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhH
Q psy14015 167 ELRSHFRNLCQDDTPMQQGHVW----EC----GS-GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDI 237 (318)
Q Consensus 167 ~l~~~~~~l~~~~~~~vR~~v~----~~----~~-~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~l 237 (318)
.+...+..++.|..+.||.... .+ ++ .....++|.+..+++|+++.||..++.+|+.++..++.+...+.+
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 243 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALV 243 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 8888888999999999997422 11 11 234678999999999999999999999999999999887777889
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCCCCchhhHHhhh
Q psy14015 238 IPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISA 308 (318)
Q Consensus 238 lp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~ 308 (318)
+|.+..+++|++|.||.+++.+++.++..+|++.....++|.+..+++| ++++||..++++
T Consensus 244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d----------~~~~vr~~a~~~ 304 (588)
T 1b3u_A 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKD----------CEAEVRAAASHK 304 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTC----------SSHHHHHHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCC----------CcHHHHHHHHHH
Confidence 9999999999999999999999999999999887778899999999999 888888876653
No 2
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.95 E-value=3.1e-26 Score=222.89 Aligned_cols=281 Identities=18% Similarity=0.214 Sum_probs=185.9
Q ss_pred HHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHh
Q psy14015 18 LIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLE 96 (318)
Q Consensus 18 l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~ 96 (318)
+...++|+++.+|..+++.|+.++..+|++.....++|.+..+++|+++ ||..++..|+.++..++.....+.++|.+.
T Consensus 169 l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 248 (588)
T 1b3u_A 169 FRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLR 248 (588)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3345566777777777777777776666655556677777766666655 777777777766665554444555667776
Q ss_pred hhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcc-----hHHHHHHH
Q psy14015 97 SLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG-----VKAELRSH 171 (318)
Q Consensus 97 ~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~-----~~~~l~~~ 171 (318)
.++.|+++.||..|++++..++...+++.....++|.+.++++|+++.+|..|+..++.+...++.. ....+...
T Consensus 249 ~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~ 328 (588)
T 1b3u_A 249 QAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPC 328 (588)
T ss_dssp HHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHH
T ss_pred HHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHH
Confidence 7667767777777777777776666555555556677767777766777777777666666555432 12333444
Q ss_pred HHhhccCCCcccccchh-hc-------Cc-cchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHH
Q psy14015 172 FRNLCQDDTPMQQGHVW-EC-------GS-GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFV 242 (318)
Q Consensus 172 ~~~l~~~~~~~vR~~v~-~~-------~~-~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~ 242 (318)
+..+.++..+.||.... .+ ++ ....+++|.+..+++|+++.||..++.+++.++..+|.+...+.++|.+.
T Consensus 329 l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~ 408 (588)
T 1b3u_A 329 IKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIV 408 (588)
T ss_dssp HHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 55556666666665311 11 11 12345677777777777777888777777777777776655567778777
Q ss_pred HhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCCCCchhhHHhhh
Q psy14015 243 NLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISA 308 (318)
Q Consensus 243 ~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~ 308 (318)
.+++|++|.||.+++.+++.++..+|++.....++|.+..+++| ++++||..++.+
T Consensus 409 ~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d----------~~~~Vr~~a~~~ 464 (588)
T 1b3u_A 409 ELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVD----------HVYAIREAATSN 464 (588)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGC----------SSHHHHHHHHHH
T ss_pred HHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcC----------CcHHHHHHHHHH
Confidence 77888888888888888888887777766666777888888888 666666655543
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.78 E-value=3.6e-18 Score=174.07 Aligned_cols=280 Identities=15% Similarity=0.092 Sum_probs=216.9
Q ss_pred HHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcc-------cch
Q psy14015 17 VLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGP-------EYV 88 (318)
Q Consensus 17 ~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~-------~~~ 88 (318)
.++..+.++++.+|..++..++.++...++. .+.+++|.+.+.+++.++ +|..+...|+.+++..+.. ...
T Consensus 94 ~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~-~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~ 172 (852)
T 4fdd_A 94 ECLNNIGDSSPLIRATVGILITTIASKGELQ-NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPL 172 (852)
T ss_dssp HHHTTTTCSSHHHHHHHHHHHHHHHHHTTTT-TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchH
Confidence 4556678899999999999999999876554 688999999999988777 9999999999887654432 124
Q ss_pred hccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhH--HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcc---
Q psy14015 89 HCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHD--LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG--- 163 (318)
Q Consensus 89 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~--- 163 (318)
..++|.+.+++.|++..||..|+.++..+....+... ....++|.+.++.+|+++.+|..|+..|+.+....+..
T Consensus 173 ~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~ 252 (852)
T 4fdd_A 173 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLP 252 (852)
T ss_dssp HHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 5688888889999999999999999988876554321 22357888888889999999999999998876654332
Q ss_pred hHHHHHHHHHhhccCCCcccccchh----hcCc---------cchHHHHHHHHHhh-----------cC-----------
Q psy14015 164 VKAELRSHFRNLCQDDTPMQQGHVW----ECGS---------GVKAELRSHFRNLC-----------QD----------- 208 (318)
Q Consensus 164 ~~~~l~~~~~~l~~~~~~~vR~~v~----~~~~---------~~~~~ll~~l~~l~-----------~D----------- 208 (318)
.-..+...+..+.++..+.||.... .+.+ .....++|.+.+.+ +|
T Consensus 253 ~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~ 332 (852)
T 4fdd_A 253 HMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTI 332 (852)
T ss_dssp GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccccccc
Confidence 2234445555666777777776321 1211 23347788888776 45
Q ss_pred CCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChh--hhhHhhHHHHHHhccc
Q psy14015 209 DTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS--DVEQLVMPTLRQCSVQ 286 (318)
Q Consensus 209 ~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~--~~~~~l~p~l~~ll~D 286 (318)
.+|.||++++.+++.++..+|. .+...++|.+..+++|++|.+|.+++.+++.+++..++. .....++|.+..+++|
T Consensus 333 ~~~~vr~~a~~~L~~la~~~~~-~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d 411 (852)
T 4fdd_A 333 SDWNLRKCSAAALDVLANVYRD-ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSD 411 (852)
T ss_dssp CCCCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCC
Confidence 5789999999999999999984 466789999999999999999999999999999877653 2346699999999999
Q ss_pred cccccccCCCCCCchhhHHhhh
Q psy14015 287 IVDHKFCPNNEFHPLELHVISA 308 (318)
Q Consensus 287 ~~~~~~~~~~~~~~Vr~~~i~~ 308 (318)
+.+.||..+...
T Consensus 412 ----------~~~~Vr~~a~~~ 423 (852)
T 4fdd_A 412 ----------KKALVRSITCWT 423 (852)
T ss_dssp ----------SSHHHHHHHHHH
T ss_pred ----------CCHHHHHHHHHH
Confidence 888888866644
No 4
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.76 E-value=6.6e-17 Score=164.75 Aligned_cols=291 Identities=13% Similarity=0.070 Sum_probs=214.5
Q ss_pred CCCCchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhH-------hhchhhhhhhhcCChHH-HHHHHHHHHccccc
Q psy14015 9 DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERT-------RGELIPFLTETIYDEDE-VLLALAEQLGTFTP 80 (318)
Q Consensus 9 ~~~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~-------~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~ 80 (318)
+.--.-++.+...++++++.+|..++..|..++...++... .+.++|.+.+++.|+++ ||.++++.|..+..
T Consensus 124 ~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~ 203 (852)
T 4fdd_A 124 QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFII 203 (852)
T ss_dssp TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTT
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 33334577888999999999999999999999987765421 35688888888888777 99999999998875
Q ss_pred CcCcc--cchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh--HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhh
Q psy14015 81 NVGGP--EYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH--DLEAHFVPLVQRLASGDWFTSRTSACGLFSVC 156 (318)
Q Consensus 81 ~~~~~--~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~ 156 (318)
..+.. .....+++.+..++.|+++.||..|..++..+++..+.. .....+++.+.+..+|++..+|..|++.+..+
T Consensus 204 ~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l 283 (852)
T 4fdd_A 204 SRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTL 283 (852)
T ss_dssp TTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 43221 123457777888889999999999999999999876542 22345788888888999899999999888776
Q ss_pred ccccC-----cchHHHHHHHH-Hhhc----------cC-----------CCcccccc----hh----hcCccchHHHHHH
Q psy14015 157 YPRVT-----AGVKAELRSHF-RNLC----------QD-----------DTPMQQGH----VW----ECGSGVKAELRSH 201 (318)
Q Consensus 157 ~~~~~-----~~~~~~l~~~~-~~l~----------~~-----------~~~~vR~~----v~----~~~~~~~~~ll~~ 201 (318)
+.... ...-..+...+ ..++ .+ ....+|.. +. ..++.....++|.
T Consensus 284 ~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~ 363 (852)
T 4fdd_A 284 AEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPL 363 (852)
T ss_dssp TTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 54311 11111222222 1221 22 22334531 11 1233455678899
Q ss_pred HHHhhcCCCHHHHHHHHHhhHHHHHHhchh--hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChh---hhhHhh
Q psy14015 202 FRNLCQDDTPMVRRAAAGKLGELAKVVEVD--YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS---DVEQLV 276 (318)
Q Consensus 202 l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~--~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~---~~~~~l 276 (318)
+.++++|++|.+|.+++.+||.++...+.. .....++|.+..+++|+++.||.+++.+++.++..+++. .....+
T Consensus 364 l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l 443 (852)
T 4fdd_A 364 LKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPL 443 (852)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 999999999999999999999999766532 245779999999999999999999999999999887653 344568
Q ss_pred HHHHHHhccccccccccCCCCCCchhhHHhhhh
Q psy14015 277 MPTLRQCSVQIVDHKFCPNNEFHPLELHVISAT 309 (318)
Q Consensus 277 ~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~ 309 (318)
+|.+...+.| .++.||.++..+.
T Consensus 444 l~~L~~~L~d----------~~~~vr~~a~~aL 466 (852)
T 4fdd_A 444 MTELLKRILD----------SNKRVQEAACSAF 466 (852)
T ss_dssp HHHHHHHHTC----------SSHHHHHHHHHHH
T ss_pred HHHHHHHHhC----------CCHHHHHHHHHHH
Confidence 9999999999 7888888876543
No 5
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.75 E-value=5e-17 Score=144.17 Aligned_cols=235 Identities=17% Similarity=0.119 Sum_probs=168.3
Q ss_pred hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccc
Q psy14015 14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLL 92 (318)
Q Consensus 14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~ll 92 (318)
.++.+++.|+++++.+|..++..|+.++ + ...+|.+.++++|+++ ||..++..|+.+.. .......++
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~---~-----~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~---~~~~~~~l~ 92 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRG---G-----QDAVRLAIEFCSDKNYIRRDIGAFILGQIKI---CKKCEDNVF 92 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHC---C-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC---CTTTHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccC---C-----chHHHHHHHHHcCCCHHHHHHHHHHHHHhcc---ccccchHHH
Confidence 4778999999999999999999999874 2 2367888888888777 99999999998753 222334466
Q ss_pred hHHh-hhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHH
Q psy14015 93 PPLE-SLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSH 171 (318)
Q Consensus 93 p~l~-~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~ 171 (318)
+.+. .++.|+++.||..|+.+|..++...+. ....++|.+.++++|+++.+|..|+..++.+... . ....
T Consensus 93 ~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~--~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~---~----~~~~ 163 (280)
T 1oyz_A 93 NILNNMALNDKSACVRATAIESTAQRCKKNPI--YSPKIVEQSQITAFDKSTNVRRATAFAISVINDK---A----TIPL 163 (280)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------C----CHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc--ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCH---H----HHHH
Confidence 7776 457899999999999999999854321 1234788888899999999999999999865321 1 1223
Q ss_pred HHhhccCCCcccccc-hhhcCcc--chHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCC
Q psy14015 172 FRNLCQDDTPMQQGH-VWECGSG--VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDE 248 (318)
Q Consensus 172 ~~~l~~~~~~~vR~~-v~~~~~~--~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~ 248 (318)
+..+..+..+.||.. +..++.. .....++.+..+++|+++.||..++.+|+.++. ...+|.+..+++|+
T Consensus 164 L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~--------~~~~~~L~~~l~d~ 235 (280)
T 1oyz_A 164 LINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--------KRVLSVLCDELKKN 235 (280)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--------GGGHHHHHHHHTSS
T ss_pred HHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC--------HhhHHHHHHHhcCc
Confidence 344555666666653 2222211 245677888888888888888888888887752 34667777777776
Q ss_pred cHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccc
Q psy14015 249 QDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQ 286 (318)
Q Consensus 249 ~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D 286 (318)
+ ||..++.+++.+.. ...+|.+..+++|
T Consensus 236 ~--vr~~a~~aL~~i~~--------~~~~~~L~~~l~~ 263 (280)
T 1oyz_A 236 T--VYDDIIEAAGELGD--------KTLLPVLDTMLYK 263 (280)
T ss_dssp S--CCHHHHHHHHHHCC--------GGGHHHHHHHHTT
T ss_pred c--HHHHHHHHHHhcCc--------hhhhHHHHHHHhc
Confidence 5 78888877777642 2467888888765
No 6
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.75 E-value=1.1e-16 Score=150.77 Aligned_cols=277 Identities=16% Similarity=0.095 Sum_probs=201.0
Q ss_pred hHHHHHHHhcCc--cHHHHHHHHHhHHHHHHhhChH---hHhhchhhhhhhhcCCh--HH-HHHHHHHHHcccccCcCcc
Q psy14015 14 PIAVLIDELKNE--DVQLRLNSIKKLSTIALALGQE---RTRGELIPFLTETIYDE--DE-VLLALAEQLGTFTPNVGGP 85 (318)
Q Consensus 14 ~i~~l~~~l~~~--~~~~R~~~~~~L~~ia~~lg~~---~~~~~llp~l~~l~~D~--~~-VR~~aa~~L~~l~~~~~~~ 85 (318)
-++.++..++++ ++.+|..++..|..++....++ .....++|.+..++.|+ ++ ||..+++.+..+...++..
T Consensus 129 ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~ 208 (462)
T 1ibr_B 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN 208 (462)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 467888899888 9999999999999998765322 23456888888888886 56 9999999999877654421
Q ss_pred ----cchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh--HHhh-hHHHHHHHhhcCCCchhhhhhhhhhhhhcc
Q psy14015 86 ----EYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH--DLEA-HFVPLVQRLASGDWFTSRTSACGLFSVCYP 158 (318)
Q Consensus 86 ----~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~-~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~ 158 (318)
.....+++.+..++.+++..||..+.+++..++...+.. .... .+++.+....+|.+..+|..|++.+..+..
T Consensus 209 ~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~ 288 (462)
T 1ibr_B 209 FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD 288 (462)
T ss_dssp HTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 123456888888888999999999999999999877542 2334 688888888888888999999887765543
Q ss_pred ccCcchHHHHHHHHHhh-ccCCCcccccchhhcCccchHHHHHHHHHhhc-------CCCHHHHHHHHHhhHHHHHHhch
Q psy14015 159 RVTAGVKAELRSHFRNL-CQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ-------DDTPMVRRAAAGKLGELAKVVEV 230 (318)
Q Consensus 159 ~~~~~~~~~l~~~~~~l-~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~-------D~~~~VR~~aa~~L~~l~~~~~~ 230 (318)
... .. ..+..- ..+..+..+. .....+.....++|.+.+.+. |++|.+|.+++.+|+.++..+|
T Consensus 289 ~~~-----~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~- 360 (462)
T 1ibr_B 289 EEM-----DL-AIEASEAAEQGRPPEHT-SKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE- 360 (462)
T ss_dssp HHH-----HH-HHHHCCTTCSSSCSSCC-CCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-
T ss_pred HHH-----HH-HHhcccccccCCCccch-hHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-
Confidence 210 00 001100 0000000000 000000012567888877664 3468999999999999999999
Q ss_pred hhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChh---hhhHhhHHHHHHhccccccccccCCCCCCchhhHHhh
Q psy14015 231 DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS---DVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVIS 307 (318)
Q Consensus 231 ~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~---~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~ 307 (318)
+.+...++|.+...++|++|.+|.+++.+++.++...+++ .....++|.+.++++| +.+.||..++.
T Consensus 361 ~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d----------~~~~Vr~~a~~ 430 (462)
T 1ibr_B 361 DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD----------PSVVVRDTAAW 430 (462)
T ss_dssp TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGC----------SCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC----------CCHHHHHHHHH
Confidence 5667889999999999999999999999999999866533 2335699999999999 88999987765
Q ss_pred h
Q psy14015 308 A 308 (318)
Q Consensus 308 ~ 308 (318)
.
T Consensus 431 ~ 431 (462)
T 1ibr_B 431 T 431 (462)
T ss_dssp H
T ss_pred H
Confidence 4
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.74 E-value=1.2e-16 Score=162.13 Aligned_cols=281 Identities=13% Similarity=0.029 Sum_probs=214.8
Q ss_pred HHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCCh-HH-HHHHHHHHHcccccCcCcc-----cch
Q psy14015 16 AVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDE-DE-VLLALAEQLGTFTPNVGGP-----EYV 88 (318)
Q Consensus 16 ~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~-~~-VR~~aa~~L~~l~~~~~~~-----~~~ 88 (318)
..+++.+.+++..+|..++..++.++...++...+.+++|.+.+.+.++ ++ +|..+...|+.+++.++.. ...
T Consensus 98 ~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ 177 (861)
T 2bpt_A 98 TNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSS 177 (861)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGH
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHH
Confidence 4567888899999999999999999988766546789999999999886 66 9999999999888765532 345
Q ss_pred hccchHHhhhccCc--hhHHHHHHHHHHHHHHhhCChh----HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCc
Q psy14015 89 HCLLPPLESLATVE--ETVVRDKAVESLRLISAQHSPH----DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA 162 (318)
Q Consensus 89 ~~llp~l~~l~~d~--~~~VR~~a~~~l~~l~~~~~~~----~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~ 162 (318)
..+++.+...+.|+ +..||..|++++..+...+... .....+++.+.+++++++|.+|..++..++.+....+.
T Consensus 178 ~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~ 257 (861)
T 2bpt_A 178 NNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYT 257 (861)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 66888888888887 7899999999999987665432 11245888888888999999999999999888765544
Q ss_pred chHH----HHHHHHHhhccCCCcccccchhh----cCc------------------------cchHHHHHHHHHhhcC--
Q psy14015 163 GVKA----ELRSHFRNLCQDDTPMQQGHVWE----CGS------------------------GVKAELRSHFRNLCQD-- 208 (318)
Q Consensus 163 ~~~~----~l~~~~~~l~~~~~~~vR~~v~~----~~~------------------------~~~~~ll~~l~~l~~D-- 208 (318)
.... .+...+.....+..+.||..... +.+ .....++|.++..+.+
T Consensus 258 ~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~ 337 (861)
T 2bpt_A 258 FMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN 337 (861)
T ss_dssp GCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3332 33333444455666666653110 000 0125677888777763
Q ss_pred -----CCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhh---hHhhHHHH
Q psy14015 209 -----DTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV---EQLVMPTL 280 (318)
Q Consensus 209 -----~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~---~~~l~p~l 280 (318)
++|.+|++++..|+.++..+|. .+...++|.+...++|++|.+|.+++.+++.+++..+++.. ...++|.+
T Consensus 338 ~d~~d~~~~~r~~a~~~L~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l 416 (861)
T 2bpt_A 338 EDPEDDDWNVSMSAGACLQLFAQNCGN-HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSI 416 (861)
T ss_dssp CC-CCCCCHHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHH
T ss_pred cccccccCcHHHHHHHHHHHHHHHccH-hHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4689999999999999999984 45678999999999999999999999999999987764433 34589999
Q ss_pred HHhccccccccccCCCCCCchhhHHhh
Q psy14015 281 RQCSVQIVDHKFCPNNEFHPLELHVIS 307 (318)
Q Consensus 281 ~~ll~D~~~~~~~~~~~~~~Vr~~~i~ 307 (318)
...++| +.+.||..+..
T Consensus 417 ~~~l~d----------~~~~vr~~a~~ 433 (861)
T 2bpt_A 417 LNLMND----------QSLQVKETTAW 433 (861)
T ss_dssp HHGGGC----------SCHHHHHHHHH
T ss_pred HHHcCC----------CcHHHHHHHHH
Confidence 999999 78888876653
No 8
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.72 E-value=1.1e-16 Score=135.95 Aligned_cols=189 Identities=21% Similarity=0.216 Sum_probs=153.3
Q ss_pred CchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhc
Q psy14015 12 LYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHC 90 (318)
Q Consensus 12 l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~ 90 (318)
-..++.+++.|+++++.+|..++..|+.+ |. ...+|.+.+++.|+++ ||..++..|+.+.. ..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~----~~----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~ 81 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKI----GD----ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ER 81 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CC----GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GG
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHh----CC----ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HH
Confidence 34578899999999999999999999986 32 2467888888888777 99999999998742 23
Q ss_pred cchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHH
Q psy14015 91 LLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRS 170 (318)
Q Consensus 91 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~ 170 (318)
.+|.+..++.|+++.||..|+.+|..+... ..+|.+.++++|+++.+|..|+..|+.+..
T Consensus 82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------------ 141 (211)
T 3ltm_A 82 AVEPLIKALKDEDGWVRQSAAVALGQIGDE--------RAVEPLIKALKDEDWFVRIAAAFALGEIGD------------ 141 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCCG--------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCcH--------HHHHHHHHHHhCCCHHHHHHHHHHHHHcCC------------
Confidence 567888888999999999999999988642 367788888999999999999998875521
Q ss_pred HHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcH
Q psy14015 171 HFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQD 250 (318)
Q Consensus 171 ~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~ 250 (318)
...++.+..+++|+++.||..++.+|+.+.. ...+|.+..+++|+++
T Consensus 142 -------------------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~ 188 (211)
T 3ltm_A 142 -------------------------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTG 188 (211)
T ss_dssp -------------------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCH
T ss_pred -------------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCH
Confidence 2347889999999999999999999999853 4688899999999999
Q ss_pred HHHHHHHHHHHHHHhhCCh
Q psy14015 251 SVRLLAVEACVSIASLLSQ 269 (318)
Q Consensus 251 ~VR~aa~~~l~~l~~~l~~ 269 (318)
.||..+..+|..+...-+.
T Consensus 189 ~vr~~A~~aL~~~~~~~~~ 207 (211)
T 3ltm_A 189 FARKVAVNYLETHKSFNHH 207 (211)
T ss_dssp HHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHhcCCCCCC
Confidence 9999999999888765443
No 9
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.72 E-value=2e-16 Score=133.38 Aligned_cols=184 Identities=21% Similarity=0.215 Sum_probs=152.5
Q ss_pred chHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhcc
Q psy14015 13 YPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCL 91 (318)
Q Consensus 13 ~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~l 91 (318)
...+.+++.|+++++.+|..++..|+.+. . ...+|.+.+++.|+++ ||..++..|+.+.. ...
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~----~----~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------~~~ 77 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIG----D----ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ERA 77 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHC----C----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGG
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcC----C----hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HHH
Confidence 34788999999999999999999999863 2 2356777788888777 99999999998742 235
Q ss_pred chHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHH
Q psy14015 92 LPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSH 171 (318)
Q Consensus 92 lp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~ 171 (318)
+|.+..++.|+++.||..|+.+|..+... ..+|.+.++++|+++.+|..|+..++.+..
T Consensus 78 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------------- 136 (201)
T 3ltj_A 78 VEPLIKALKDEDGWVRQSAAVALGQIGDE--------RAVEPLIKALKDEDWFVRIAAAFALGEIGD------------- 136 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCCG--------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCcH--------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------------
Confidence 67888888999999999999999988642 367778888899999999999998875421
Q ss_pred HHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHH
Q psy14015 172 FRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDS 251 (318)
Q Consensus 172 ~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~ 251 (318)
...++.+..+++|+++.||..++.+|+.++. ...+|.+..+++|+++.
T Consensus 137 ------------------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~d~~~~ 184 (201)
T 3ltj_A 137 ------------------------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGF 184 (201)
T ss_dssp ------------------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHH
T ss_pred ------------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHH
Confidence 2357889999999999999999999999842 45888999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy14015 252 VRLLAVEACVSIAS 265 (318)
Q Consensus 252 VR~aa~~~l~~l~~ 265 (318)
||.++..++..+..
T Consensus 185 vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 185 ARKVAVNYLETHKS 198 (201)
T ss_dssp HHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887654
No 10
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.69 E-value=6.2e-16 Score=163.34 Aligned_cols=283 Identities=12% Similarity=0.114 Sum_probs=213.0
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcc--------
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGP-------- 85 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~-------- 85 (318)
+..+++.+.++++.+|..++..|+.++..+++. ....+++.+...+.|+++ ||.+++..|+.++..++..
T Consensus 50 l~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~-~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~ 128 (1230)
T 1u6g_C 50 VKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY-QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAA 128 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH-HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHH
Confidence 567888999999999999999999999888774 677889999888877666 9999999999998877654
Q ss_pred cchhccchHHhhhccC-chhHHHHHHHHHHHHHHhhCChh--HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCc
Q psy14015 86 EYVHCLLPPLESLATV-EETVVRDKAVESLRLISAQHSPH--DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA 162 (318)
Q Consensus 86 ~~~~~llp~l~~l~~d-~~~~VR~~a~~~l~~l~~~~~~~--~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~ 162 (318)
..++.++|.+...+.| ++..+|..|+.++..+++..+.. .+...+++.+...+.+++..+|..|+..++.+....++
T Consensus 129 ~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~ 208 (1230)
T 1u6g_C 129 NVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN 208 (1230)
T ss_dssp HHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH
Confidence 2577899999888884 78999999999999999765441 23455788888888898899999999999988776654
Q ss_pred chHHHHH-HHHHhhccCCCcccccchh--------hcCc---cchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch
Q psy14015 163 GVKAELR-SHFRNLCQDDTPMQQGHVW--------ECGS---GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV 230 (318)
Q Consensus 163 ~~~~~l~-~~~~~l~~~~~~~vR~~v~--------~~~~---~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~ 230 (318)
..-..+. ..+..+....++.+|.... ..++ ..-..++|.+.+.++|+++.||..++.+++.++..+|.
T Consensus 209 ~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~ 288 (1230)
T 1u6g_C 209 IVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK 288 (1230)
T ss_dssp --CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChH
Confidence 3222211 2223333333345665311 1122 23367999999999999999999999999999998876
Q ss_pred hh--hHhhHHHHHHHhhc-------------------------------------CCcHHHHHHHHHHHHHHHhhCCh--
Q psy14015 231 DY--LKTDIIPMFVNLAQ-------------------------------------DEQDSVRLLAVEACVSIASLLSQ-- 269 (318)
Q Consensus 231 ~~--~~~~llp~l~~ll~-------------------------------------D~~~~VR~aa~~~l~~l~~~l~~-- 269 (318)
+. ....++|.+.+.++ |..|.||.+++.++..++...+.
T Consensus 289 ~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~ 368 (1230)
T 1u6g_C 289 EVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEML 368 (1230)
T ss_dssp CCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHH
Confidence 42 45667776655442 23588999999999999987765
Q ss_pred hhhhHhhHHHHHHhccccccccccCCCCCCchhhHHhhh
Q psy14015 270 SDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISA 308 (318)
Q Consensus 270 ~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~ 308 (318)
......++|.+...+.| ..++||..+++.
T Consensus 369 ~~~~~~l~~~l~~~l~d----------~~~~Vr~~a~~~ 397 (1230)
T 1u6g_C 369 PEFYKTVSPALISRFKE----------REENVKADVFHA 397 (1230)
T ss_dssp HHHHTTTHHHHHSTTSC----------SSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC----------CchHHHHHHHHH
Confidence 34556789999999999 889999777754
No 11
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.68 E-value=3.7e-16 Score=158.79 Aligned_cols=278 Identities=15% Similarity=0.024 Sum_probs=205.8
Q ss_pred HHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCCh--HH-HHHHHHHHHcccccCcCc---ccchhcc
Q psy14015 18 LIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDE--DE-VLLALAEQLGTFTPNVGG---PEYVHCL 91 (318)
Q Consensus 18 l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~--~~-VR~~aa~~L~~l~~~~~~---~~~~~~l 91 (318)
+++.+.++++.+ ..++..++.++...++...+.+++|.+.+.++++ ++ +|..+.+.|+.+++.+++ ......+
T Consensus 95 ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~l 173 (876)
T 1qgr_A 95 VLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEI 173 (876)
T ss_dssp HHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHH
T ss_pred HHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHH
Confidence 677788888888 8999999999887666556889999999988776 66 999999999998875532 2344557
Q ss_pred chHHhhhccCc--hhHHHHHHHHHHHHHHhhCChh----HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchH
Q psy14015 92 LPPLESLATVE--ETVVRDKAVESLRLISAQHSPH----DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVK 165 (318)
Q Consensus 92 lp~l~~l~~d~--~~~VR~~a~~~l~~l~~~~~~~----~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~ 165 (318)
++.+...+.++ +..||..|++++..++..++.. .....+++.+.++.+++++.+|..+++.++.++........
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 253 (876)
T 1qgr_A 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME 253 (876)
T ss_dssp HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCH
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence 78788877776 6899999999999988765432 12235788888888888899999999998877654443322
Q ss_pred H----HHHHHHHhhccCCCcccccchh-------hc-------------------Cc---c---chHHHHHHHHHhhc--
Q psy14015 166 A----ELRSHFRNLCQDDTPMQQGHVW-------EC-------------------GS---G---VKAELRSHFRNLCQ-- 207 (318)
Q Consensus 166 ~----~l~~~~~~l~~~~~~~vR~~v~-------~~-------------------~~---~---~~~~ll~~l~~l~~-- 207 (318)
. .+...+.....+..+.||.... .. .. . ..+.++|.+.+.+.
T Consensus 254 ~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~ 333 (876)
T 1qgr_A 254 TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ 333 (876)
T ss_dssp HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcc
Confidence 2 2222222233444445554210 00 00 0 12567787777764
Q ss_pred -----CCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhh---hhHhhHHH
Q psy14015 208 -----DDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD---VEQLVMPT 279 (318)
Q Consensus 208 -----D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~---~~~~l~p~ 279 (318)
|++|.+|++++.+++.++..+|. .+...++|.+...++|++|.+|.+++.+++.++..++++. ....++|.
T Consensus 334 ~~d~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~ 412 (876)
T 1qgr_A 334 DENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPT 412 (876)
T ss_dssp CSSCCTTCCCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHHHHCcH-hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 46799999999999999999984 4567899999999999999999999999999998887442 34568999
Q ss_pred HHHhccccccccccCCCCCCchhhHHhh
Q psy14015 280 LRQCSVQIVDHKFCPNNEFHPLELHVIS 307 (318)
Q Consensus 280 l~~ll~D~~~~~~~~~~~~~~Vr~~~i~ 307 (318)
+..+++| +.+.||..++.
T Consensus 413 l~~~l~d----------~~~~vr~~a~~ 430 (876)
T 1qgr_A 413 LIELMKD----------PSVVVRDTAAW 430 (876)
T ss_dssp HHHHHTC----------SSHHHHHHHHH
T ss_pred HHHHhCC----------CCHHHHHHHHH
Confidence 9999999 77888866654
No 12
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.68 E-value=6.9e-16 Score=131.05 Aligned_cols=179 Identities=20% Similarity=0.144 Sum_probs=149.2
Q ss_pred hchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhh
Q psy14015 51 GELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAH 129 (318)
Q Consensus 51 ~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ 129 (318)
.+.+|.+.++++|+++ +|..++..|+.+.. ...+|.+..++.|+++.||..|+.+|..+... .
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~--------~ 81 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE--------R 81 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG--------G
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH--------H
Confidence 3467788888888777 99999999998743 24677888888999999999999999988642 3
Q ss_pred HHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCC
Q psy14015 130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDD 209 (318)
Q Consensus 130 ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~ 209 (318)
.+|.+.++++|+++.+|..|+..++.+.. ...++.+.++++|+
T Consensus 82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------------------------------------~~~~~~L~~~l~d~ 124 (211)
T 3ltm_A 82 AVEPLIKALKDEDGWVRQSAAVALGQIGD-------------------------------------ERAVEPLIKALKDE 124 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------------------------------------GGGHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------------------------------HHHHHHHHHHHhCC
Confidence 67778888999999999999998875421 23468888999999
Q ss_pred CHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhcccccc
Q psy14015 210 TPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVD 289 (318)
Q Consensus 210 ~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~ 289 (318)
++.||..++.+|+.++. ...+|.+..+++|+++.||..++.+++.+.. ...+|.+..+++|
T Consensus 125 ~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d--- 185 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGD--------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAET--- 185 (211)
T ss_dssp SHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHHcCC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhC---
Confidence 99999999999998843 3578889999999999999999999998852 4578899999999
Q ss_pred ccccCCCCCCchhhHHhhh
Q psy14015 290 HKFCPNNEFHPLELHVISA 308 (318)
Q Consensus 290 ~~~~~~~~~~~Vr~~~i~~ 308 (318)
+++.||..+++.
T Consensus 186 -------~~~~vr~~A~~a 197 (211)
T 3ltm_A 186 -------GTGFARKVAVNY 197 (211)
T ss_dssp -------CCHHHHHHHHHH
T ss_pred -------CCHHHHHHHHHH
Confidence 999999998854
No 13
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.67 E-value=6.4e-15 Score=138.49 Aligned_cols=259 Identities=13% Similarity=0.058 Sum_probs=196.0
Q ss_pred hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhC---hHhHhhchhhhhhhhcCC-hHH-HHHHHHHHHcccccCcCc---c
Q psy14015 14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALG---QERTRGELIPFLTETIYD-EDE-VLLALAEQLGTFTPNVGG---P 85 (318)
Q Consensus 14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg---~~~~~~~llp~l~~l~~D-~~~-VR~~aa~~L~~l~~~~~~---~ 85 (318)
-++.+...++++++.+|..++..|..++.... .......++|.+.+++.+ .++ +|..++..|+.++..-+. .
T Consensus 108 ~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 187 (450)
T 2jdq_A 108 AVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEF 187 (450)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCG
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCH
Confidence 47788899999999999999999999975321 111234678889888875 455 999999999999853311 2
Q ss_pred cchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh---hHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCc
Q psy14015 86 EYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP---HDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA 162 (318)
Q Consensus 86 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~ 162 (318)
.....++|.+..++.++++.+|..+..++..++...++ ......++|.+.+++.++++.+|..|+..++.+......
T Consensus 188 ~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 267 (450)
T 2jdq_A 188 AKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDI 267 (450)
T ss_dssp GGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChH
Confidence 23366889999999999999999999999999875432 112234788888999999999999999999877543221
Q ss_pred chHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch---hhhHhhHHH
Q psy14015 163 GVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV---DYLKTDIIP 239 (318)
Q Consensus 163 ~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~---~~~~~~llp 239 (318)
....+ ....++|.+.++++++++.+|+.++.+|+.++..... ......++|
T Consensus 268 -~~~~~-------------------------~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 321 (450)
T 2jdq_A 268 -QTQVI-------------------------LNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFP 321 (450)
T ss_dssp -HHHHH-------------------------HTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred -HHHHH-------------------------HHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 11111 1234789999999999999999999999999852111 112246899
Q ss_pred HHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhh----HhhHHHHHHhccccccccccCCCCCCchhhHHhhh
Q psy14015 240 MFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE----QLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISA 308 (318)
Q Consensus 240 ~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~----~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~ 308 (318)
.+..+++|+++.||..++.++++++...+++... ..++|.|..++++ +++.||..++..
T Consensus 322 ~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~----------~~~~v~~~a~~a 384 (450)
T 2jdq_A 322 ALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTV----------MDSKIVQVALNG 384 (450)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGS----------SCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcC----------CCHHHHHHHHHH
Confidence 9999999999999999999999999765554322 3599999999999 778888777644
No 14
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.67 E-value=6.9e-15 Score=149.16 Aligned_cols=257 Identities=16% Similarity=0.119 Sum_probs=192.9
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHh--Hhh-chhhhhhhhcCChHH-HHHHHHHHHcccccCcCc------
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQER--TRG-ELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG------ 84 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~--~~~-~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~------ 84 (318)
+..+.+.++++++.+|..+++.|..++...+... ... .+++++...+.|.++ ||..+.+.+..+++....
T Consensus 226 l~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 305 (861)
T 2bpt_A 226 MQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELA 305 (861)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3445567788999999999999999987654321 123 677777777888666 999999998887653210
Q ss_pred -------------ccchhccchHHhhhccC-------chhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCch
Q psy14015 85 -------------PEYVHCLLPPLESLATV-------EETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFT 144 (318)
Q Consensus 85 -------------~~~~~~llp~l~~l~~d-------~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~ 144 (318)
......++|.+...+.+ +++.+|..|..++..++..++. .+...++|.+.+.+++++|.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~ 384 (861)
T 2bpt_A 306 QFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN-HILEPVLEFVEQNITADNWR 384 (861)
T ss_dssp HCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHTTCSSHH
T ss_pred hccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH-hHHHHHHHHHHHHcCCCChh
Confidence 11224577777655543 3468999999999999988773 44556889999999999999
Q ss_pred hhhhhhhhhhhhccccC-cchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHH
Q psy14015 145 SRTSACGLFSVCYPRVT-AGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGE 223 (318)
Q Consensus 145 vR~~a~~~l~~~~~~~~-~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~ 223 (318)
+|..|+..++.+..... ..... ....++|.+...++|+++.||..++.+++.
T Consensus 385 ~r~~a~~~l~~i~~~~~~~~~~~---------------------------~l~~il~~l~~~l~d~~~~vr~~a~~~l~~ 437 (861)
T 2bpt_A 385 NREAAVMAFGSIMDGPDKVQRTY---------------------------YVHQALPSILNLMNDQSLQVKETTAWCIGR 437 (861)
T ss_dssp HHHHHHHHHHHTSSSSCHHHHHH---------------------------HHHHHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHH---------------------------HHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 99999999998875543 11111 125678999999999999999999999999
Q ss_pred HHHHhch----hhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCCh---h---hhhHhhHHHHHHhcccccccccc
Q psy14015 224 LAKVVEV----DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ---S---DVEQLVMPTLRQCSVQIVDHKFC 293 (318)
Q Consensus 224 l~~~~~~----~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~---~---~~~~~l~p~l~~ll~D~~~~~~~ 293 (318)
++..++. ......++|.+...++|+ +.||.+++.++..+++.+++ + .....++|.+.+++++.+
T Consensus 438 l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d----- 511 (861)
T 2bpt_A 438 IADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRID----- 511 (861)
T ss_dssp HHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSC-----
T ss_pred HHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcC-----
Confidence 9998865 345678999999999997 99999999999999998762 2 234567888899998400
Q ss_pred CCCCCCchhhHHhhh
Q psy14015 294 PNNEFHPLELHVISA 308 (318)
Q Consensus 294 ~~~~~~~Vr~~~i~~ 308 (318)
.+++||..+++.
T Consensus 512 ---~~~~vr~~a~~a 523 (861)
T 2bpt_A 512 ---NEFNARASAFSA 523 (861)
T ss_dssp ---CGGGHHHHHHHH
T ss_pred ---cchHHHHHHHHH
Confidence 346788766543
No 15
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.66 E-value=6.3e-15 Score=149.74 Aligned_cols=283 Identities=16% Similarity=0.117 Sum_probs=206.1
Q ss_pred hHHHHHHHhcCc--cHHHHHHHHHhHHHHHHhhChHh---HhhchhhhhhhhcCCh--HH-HHHHHHHHHcccccCcCcc
Q psy14015 14 PIAVLIDELKNE--DVQLRLNSIKKLSTIALALGQER---TRGELIPFLTETIYDE--DE-VLLALAEQLGTFTPNVGGP 85 (318)
Q Consensus 14 ~i~~l~~~l~~~--~~~~R~~~~~~L~~ia~~lg~~~---~~~~llp~l~~l~~D~--~~-VR~~aa~~L~~l~~~~~~~ 85 (318)
-++.++..++++ ++.+|..+++.|..++..++++. ....++|.+.+.+.++ ++ ||..+.+.|..++..++..
T Consensus 129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~ 208 (876)
T 1qgr_A 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN 208 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888888 89999999999999988766432 3456788888877775 45 9999999999887765432
Q ss_pred c----chhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh--HHhh-hHHHHHHHhhcCCCchhhhhhhhhhhhhcc
Q psy14015 86 E----YVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH--DLEA-HFVPLVQRLASGDWFTSRTSACGLFSVCYP 158 (318)
Q Consensus 86 ~----~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~-~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~ 158 (318)
. ....+++.+..++.|+++.||..+.+++..++...+.. .... .+++.+.+..++++..+|..|++.+..+..
T Consensus 209 ~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~ 288 (876)
T 1qgr_A 209 FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD 288 (876)
T ss_dssp HTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 1 11347888888888889999999999999999876542 2233 678888888888888999998877766543
Q ss_pred cc--------------------Ccc-hH---HHHHH-HHHhhcc------CCCcccccch----h----hcCccchHHHH
Q psy14015 159 RV--------------------TAG-VK---AELRS-HFRNLCQ------DDTPMQQGHV----W----ECGSGVKAELR 199 (318)
Q Consensus 159 ~~--------------------~~~-~~---~~l~~-~~~~l~~------~~~~~vR~~v----~----~~~~~~~~~ll 199 (318)
.. ... .+ ..+.. .+..++. +..+.+|... . ..++.....++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l 368 (876)
T 1qgr_A 289 EEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVL 368 (876)
T ss_dssp HHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHH
Confidence 21 001 11 12222 2222332 2234455421 0 12234456788
Q ss_pred HHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh---hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChh----hh
Q psy14015 200 SHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD---YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS----DV 272 (318)
Q Consensus 200 ~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~---~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~----~~ 272 (318)
|.+...++|++|.+|.+++.+++.++..++++ .....++|.+...++|+++.||.+++.+++.++..+++. ..
T Consensus 369 ~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 448 (876)
T 1qgr_A 369 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY 448 (876)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT
T ss_pred HHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH
Confidence 88888999999999999999999999766633 234678999999999999999999999999999988753 44
Q ss_pred hHhhHHHHHHhccccccccccCCCCCCchhhHHhh
Q psy14015 273 EQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVIS 307 (318)
Q Consensus 273 ~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~ 307 (318)
...++|.++..++| . +.||.++..
T Consensus 449 l~~~l~~l~~~l~~----------~-~~v~~~a~~ 472 (876)
T 1qgr_A 449 LAPLLQCLIEGLSA----------E-PRVASNVCW 472 (876)
T ss_dssp HHHHHHHHHHHTTS----------C-HHHHHHHHH
T ss_pred HHHHHHHHHHHHcC----------C-HHHHHHHHH
Confidence 56799999999998 4 677766554
No 16
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.66 E-value=1.7e-15 Score=131.75 Aligned_cols=192 Identities=12% Similarity=0.079 Sum_probs=145.4
Q ss_pred HhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCc--ccchhccchHHhhhc-cCchhHHHHHHHHHHHHHHhhCChh
Q psy14015 49 TRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG--PEYVHCLLPPLESLA-TVEETVVRDKAVESLRLISAQHSPH 124 (318)
Q Consensus 49 ~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~--~~~~~~llp~l~~l~-~d~~~~VR~~a~~~l~~l~~~~~~~ 124 (318)
....+-|.+.+.++|.+| +|++++..|..++...+. ......+++.+..++ +|.+..||..|+.++..++..+++.
T Consensus 12 i~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~ 91 (242)
T 2qk2_A 12 ILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKR 91 (242)
T ss_dssp CGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGG
T ss_pred ccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 344555556667777788 888888888877653111 112245677777777 4888899999999999999877653
Q ss_pred --HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHH
Q psy14015 125 --DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHF 202 (318)
Q Consensus 125 --~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l 202 (318)
.+...++|.+.+.++|+...+|..|+..+..++...+ -+.++|.+
T Consensus 92 ~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~---------------------------------~~~ll~~l 138 (242)
T 2qk2_A 92 FSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS---------------------------------LEAQQESI 138 (242)
T ss_dssp GHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC---------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC---------------------------------HHHHHHHH
Confidence 3445688888888899888899888887765543221 15678888
Q ss_pred HHhhcCCCHHHHHHHHHhhHHHHHHhchh----hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhh
Q psy14015 203 RNLCQDDTPMVRRAAAGKLGELAKVVEVD----YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE 273 (318)
Q Consensus 203 ~~l~~D~~~~VR~~aa~~L~~l~~~~~~~----~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~ 273 (318)
...++|.+|.||..++..++.+....+++ .....++|.+..+++|+++.||.++..+++.++..+|.+...
T Consensus 139 ~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~ 213 (242)
T 2qk2_A 139 VESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVT 213 (242)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHH
Confidence 99999999999999999999987666543 234679999999999999999999999999999999876543
No 17
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.66 E-value=1.6e-15 Score=127.78 Aligned_cols=180 Identities=20% Similarity=0.141 Sum_probs=148.8
Q ss_pred hhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhh
Q psy14015 50 RGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEA 128 (318)
Q Consensus 50 ~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~ 128 (318)
.....|.+.++++|+++ ||..++..|+.+.. ...++.+..++.|+++.||..|+.++..+...
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-------- 75 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE-------- 75 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG--------
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH--------
Confidence 34567788888998887 99999999998742 23567777888899999999999999888632
Q ss_pred hHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcC
Q psy14015 129 HFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQD 208 (318)
Q Consensus 129 ~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D 208 (318)
..+|.+.++++|+++.+|..|+..++.+.. ...++.+..+++|
T Consensus 76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------------------------------------~~~~~~L~~~l~d 118 (201)
T 3ltj_A 76 RAVEPLIKALKDEDGWVRQSAAVALGQIGD-------------------------------------ERAVEPLIKALKD 118 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------------------------------------GGGHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------------------------------HHHHHHHHHHHcC
Confidence 367778888999999999999998875421 2346888889999
Q ss_pred CCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccc
Q psy14015 209 DTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIV 288 (318)
Q Consensus 209 ~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~ 288 (318)
+++.||..++.+|+.+.. ...+|.+..+++|+++.||..++.+++.+. ....+|.+..+++|
T Consensus 119 ~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~--------~~~~~~~L~~~l~d-- 180 (201)
T 3ltj_A 119 EDWFVRIAAAFALGEIGD--------ERAVEPLIKALKDEDGWVRQSAADALGEIG--------GERVRAAMEKLAET-- 180 (201)
T ss_dssp SSHHHHHHHHHHHHHHTC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------SHHHHHHHHHHHHH--
T ss_pred CCHHHHHHHHHHHHHhCC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------chhHHHHHHHHHhC--
Confidence 999999999999998853 457888999999999999999999999884 24578899999999
Q ss_pred cccccCCCCCCchhhHHhhh
Q psy14015 289 DHKFCPNNEFHPLELHVISA 308 (318)
Q Consensus 289 ~~~~~~~~~~~~Vr~~~i~~ 308 (318)
++++||..+++.
T Consensus 181 --------~~~~vr~~A~~a 192 (201)
T 3ltj_A 181 --------GTGFARKVAVNY 192 (201)
T ss_dssp --------CCHHHHHHHHHH
T ss_pred --------CCHHHHHHHHHH
Confidence 999999998854
No 18
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.66 E-value=1.3e-15 Score=143.41 Aligned_cols=245 Identities=13% Similarity=0.048 Sum_probs=185.6
Q ss_pred HHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCCh--HH-HHHHHHHHHcccccCcCc---ccchhc
Q psy14015 17 VLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDE--DE-VLLALAEQLGTFTPNVGG---PEYVHC 90 (318)
Q Consensus 17 ~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~--~~-VR~~aa~~L~~l~~~~~~---~~~~~~ 90 (318)
.++..+.+++..+ ..++..++.++...+++..+.+++|.+.+.++++ ++ +|..++..|+.+++...+ ......
T Consensus 94 ~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ 172 (462)
T 1ibr_B 94 YVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNE 172 (462)
T ss_dssp HHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHH
T ss_pred HHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHH
Confidence 3567778888888 8899999999988777556789999999988776 66 999999999998864422 233456
Q ss_pred cchHHhhhccCc--hhHHHHHHHHHHHHHHhhCChh----HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcch
Q psy14015 91 LLPPLESLATVE--ETVVRDKAVESLRLISAQHSPH----DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGV 164 (318)
Q Consensus 91 llp~l~~l~~d~--~~~VR~~a~~~l~~l~~~~~~~----~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~ 164 (318)
+++.+..++.|+ +..||..|+.++..+...+... .....+++.+.++..++++.+|..++..|+.+........
T Consensus 173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~ 252 (462)
T 1ibr_B 173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM 252 (462)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGC
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888 6899999999999987655321 1234568888888888889999999988876654332210
Q ss_pred HHHHHHHHHhhccCCCcccccchhhcCccchH-HHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHh---------------
Q psy14015 165 KAELRSHFRNLCQDDTPMQQGHVWECGSGVKA-ELRSHFRNLCQDDTPMVRRAAAGKLGELAKVV--------------- 228 (318)
Q Consensus 165 ~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~-~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~--------------- 228 (318)
+ .... .+++.+...++|.++.||..++..++.++...
T Consensus 253 ~---------------------------~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 305 (462)
T 1ibr_B 253 E---------------------------TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGR 305 (462)
T ss_dssp T---------------------------TTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSS
T ss_pred H---------------------------HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence 0 0113 67888888889999999999999999988753
Q ss_pred ---c--hhh---hHhhHHHHHHHhhc-------CCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccc
Q psy14015 229 ---E--VDY---LKTDIIPMFVNLAQ-------DEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDH 290 (318)
Q Consensus 229 ---~--~~~---~~~~llp~l~~ll~-------D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~ 290 (318)
. ... ....++|.+...+. |.+|.+|.+++.+++.++..+| +.....++|.+...++|++|.
T Consensus 306 ~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~ 381 (462)
T 1ibr_B 306 PPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWR 381 (462)
T ss_dssp CSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCSSHH
T ss_pred CccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCChH
Confidence 0 001 12568887776664 4578999999999999999999 456678999999999994443
No 19
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.65 E-value=1.9e-15 Score=133.92 Aligned_cols=219 Identities=15% Similarity=0.159 Sum_probs=159.7
Q ss_pred hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhh-hcCChHH-HHHHHHHHHcccccCcCcccchhcc
Q psy14015 14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTE-TIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCL 91 (318)
Q Consensus 14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~-l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~l 91 (318)
.++.+++.++++++.+|..++..|+.++. .......+++.+.. +.+|+++ ||..++..|+.+.... +.....+
T Consensus 55 ~~~~L~~~l~d~~~~vR~~A~~aL~~l~~---~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~--~~~~~~~ 129 (280)
T 1oyz_A 55 AVRLAIEFCSDKNYIRRDIGAFILGQIKI---CKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKN--PIYSPKI 129 (280)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHSCC---CTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC--GGGHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcc---ccccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC--CcccHHH
Confidence 36778889999999999999999988631 22233456777763 5677766 9999999999886311 2234557
Q ss_pred chHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHH
Q psy14015 92 LPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSH 171 (318)
Q Consensus 92 lp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~ 171 (318)
+|.+..++.|+++.||..|+.++..+... ..+|.+.++++|+++.+|..|+..++.+... .......
T Consensus 130 ~~~L~~~l~d~~~~vR~~a~~aL~~~~~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----~~~~~~~ 196 (280)
T 1oyz_A 130 VEQSQITAFDKSTNVRRATAFAISVINDK--------ATIPLLINLLKDPNGDVRNWAAFAININKYD-----NSDIRDC 196 (280)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC-----CHHHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccC-----cHHHHHH
Confidence 88888899999999999999998877542 2677888889999999999999999876311 1223344
Q ss_pred HHhhccCCCcccccc-hhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcC-Cc
Q psy14015 172 FRNLCQDDTPMQQGH-VWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQD-EQ 249 (318)
Q Consensus 172 ~~~l~~~~~~~vR~~-v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D-~~ 249 (318)
+..+..+..+.||.. +..++.......+|.+..+++|++ ||..++.+|+.++. ...+|.+..++++ ++
T Consensus 197 L~~~l~d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~ 266 (280)
T 1oyz_A 197 FVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNT--VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDD 266 (280)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhCCHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc--------hhhhHHHHHHHhcCCC
Confidence 556667777888874 333333335677899999999865 99999999998753 3578888888865 45
Q ss_pred HHHHHHHHHHH
Q psy14015 250 DSVRLLAVEAC 260 (318)
Q Consensus 250 ~~VR~aa~~~l 260 (318)
..++..++.++
T Consensus 267 ~~~~~~~~~~l 277 (280)
T 1oyz_A 267 NEIITSAIDKL 277 (280)
T ss_dssp CHHHHHHHHHH
T ss_pred cHHHHHHHHHh
Confidence 66777666654
No 20
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.65 E-value=4.2e-15 Score=156.97 Aligned_cols=258 Identities=13% Similarity=0.083 Sum_probs=201.2
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHh--HhhchhhhhhhhcC------------------------------
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQER--TRGELIPFLTETIY------------------------------ 62 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~--~~~~llp~l~~l~~------------------------------ 62 (318)
++.++..++++++.+|..++..+..++..+|.+. ....++|.+.+.+.
T Consensus 257 ~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 336 (1230)
T 1u6g_C 257 IPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSD 336 (1230)
T ss_dssp HHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC----------------------------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcc
Confidence 5677788889999999999999999998877541 34566777655442
Q ss_pred -------ChHH-HHHHHHHHHcccccCcCc--ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh---------
Q psy14015 63 -------DEDE-VLLALAEQLGTFTPNVGG--PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP--------- 123 (318)
Q Consensus 63 -------D~~~-VR~~aa~~L~~l~~~~~~--~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--------- 123 (318)
|..| ||.+++..|..++...+. ..+.+.++|.+...+.|.++.||..++.++..++...+.
T Consensus 337 ~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ 416 (1230)
T 1u6g_C 337 DEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPD 416 (1230)
T ss_dssp --------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC--------
T ss_pred cccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCcc
Confidence 1125 899999999999875553 345566888888888999999999999999988875432
Q ss_pred ------------hHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcC
Q psy14015 124 ------------HDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECG 191 (318)
Q Consensus 124 ------------~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~ 191 (318)
+.....++|.+.+.++|++|.+|..++..++.++........
T Consensus 417 ~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~-------------------------- 470 (1230)
T 1u6g_C 417 AMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALT-------------------------- 470 (1230)
T ss_dssp ----CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTG--------------------------
T ss_pred ccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhH--------------------------
Confidence 234445788888889999999999999888876544322110
Q ss_pred ccchHHHHHHHHHhhcCCCH--HHHHHHHHhhHHHHHHhchhh---hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhh
Q psy14015 192 SGVKAELRSHFRNLCQDDTP--MVRRAAAGKLGELAKVVEVDY---LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASL 266 (318)
Q Consensus 192 ~~~~~~ll~~l~~l~~D~~~--~VR~~aa~~L~~l~~~~~~~~---~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~ 266 (318)
.....++|.+.+.++|+++ .+|..++..++.+....|++. ....++|.+...++|+++.||..++.+++.+++.
T Consensus 471 -~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~ 549 (1230)
T 1u6g_C 471 -QHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKV 549 (1230)
T ss_dssp -GGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHH
Confidence 1336789999999999875 999999999999998877764 4567999999999999999999999999999998
Q ss_pred CCh---------hhhhHhhHHHHHHhc--cccccccccCCCCCCchhhHHhhhh
Q psy14015 267 LSQ---------SDVEQLVMPTLRQCS--VQIVDHKFCPNNEFHPLELHVISAT 309 (318)
Q Consensus 267 l~~---------~~~~~~l~p~l~~ll--~D~~~~~~~~~~~~~~Vr~~~i~~~ 309 (318)
+|+ ....+.++|.++..+ .| ++++||.+++.+.
T Consensus 550 ~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d----------~~~~vr~~a~~~l 593 (1230)
T 1u6g_C 550 IRPLDQPSSFDATPYIKDLFTCTIKRLKAAD----------IDQEVKERAISCM 593 (1230)
T ss_dssp HCCSSSCCCCCCHHHHHHHHHHHHHHHSCSS----------SCHHHHHHHHHHH
T ss_pred hcCcccccccchHHHHHHHHHHHHHHHhccC----------CCHHHHHHHHHHH
Confidence 876 134567999999999 77 7888888777543
No 21
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.64 E-value=3.4e-15 Score=140.43 Aligned_cols=282 Identities=12% Similarity=0.092 Sum_probs=202.7
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHh-hCh--Hh-Hhh-chhhhhhhhcCCh-HH-HHHHHHHHHcccccCcCc---
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALA-LGQ--ER-TRG-ELIPFLTETIYDE-DE-VLLALAEQLGTFTPNVGG--- 84 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~-lg~--~~-~~~-~llp~l~~l~~D~-~~-VR~~aa~~L~~l~~~~~~--- 84 (318)
++.+++.++++++.+|..++..|..+... -.+ .. ... .++|.+.+++.++ ++ +|..++..|..++..-..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 66788899999999999999999998652 121 11 223 6899998888776 56 999999999998752110
Q ss_pred ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh--h-HHhhhHHHHHHHhhcC-CCchhhhhhhhhhhhhcccc
Q psy14015 85 PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP--H-DLEAHFVPLVQRLASG-DWFTSRTSACGLFSVCYPRV 160 (318)
Q Consensus 85 ~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~-~~~~~ilp~~~~l~~d-~~~~vR~~a~~~l~~~~~~~ 160 (318)
......++|.+..++.++++.||..|+.+|..++...+. + .....++|.+.+++++ +++.+|..|+..++.+....
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 011245889999999999999999999999999975432 1 1223478888888885 68999999999999887543
Q ss_pred -C---cchHHHHHHHHHhhccCCCcccccc-hhh---cCc--------cchHHHHHHHHHhhcCCCHHHHHHHHHhhHHH
Q psy14015 161 -T---AGVKAELRSHFRNLCQDDTPMQQGH-VWE---CGS--------GVKAELRSHFRNLCQDDTPMVRRAAAGKLGEL 224 (318)
Q Consensus 161 -~---~~~~~~l~~~~~~l~~~~~~~vR~~-v~~---~~~--------~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l 224 (318)
. ......+...+..+..+.++.+|.. ++. +.. .....++|.+.+++.++++.||..++.+|+.+
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 1 1111233344555566666666642 111 111 11235789999999999999999999999999
Q ss_pred HHHhch--h-hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChh---hhhHhhHHHHHHhccccccccccCCCCC
Q psy14015 225 AKVVEV--D-YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS---DVEQLVMPTLRQCSVQIVDHKFCPNNEF 298 (318)
Q Consensus 225 ~~~~~~--~-~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~---~~~~~l~p~l~~ll~D~~~~~~~~~~~~ 298 (318)
+...+. + .....++|.+..+++++++.+|..++.++++++..-... .....++|.+..+++| ++
T Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~----------~~ 331 (450)
T 2jdq_A 262 VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQT----------AE 331 (450)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHH----------SC
T ss_pred hhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc----------CC
Confidence 863221 1 112358999999999999999999999999998532111 1124689999999999 78
Q ss_pred CchhhHHh
Q psy14015 299 HPLELHVI 306 (318)
Q Consensus 299 ~~Vr~~~i 306 (318)
+.||..++
T Consensus 332 ~~v~~~a~ 339 (450)
T 2jdq_A 332 FRTRKEAA 339 (450)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887754
No 22
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.62 E-value=5.4e-15 Score=128.55 Aligned_cols=184 Identities=17% Similarity=0.194 Sum_probs=150.4
Q ss_pred HHHHHhcCccHHHHHHHHHhHHHHHHhhCh--HhHhhchhhhhhhhcC-ChHH-HHHHHHHHHcccccCcCcc--cchhc
Q psy14015 17 VLIDELKNEDVQLRLNSIKKLSTIALALGQ--ERTRGELIPFLTETIY-DEDE-VLLALAEQLGTFTPNVGGP--EYVHC 90 (318)
Q Consensus 17 ~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~--~~~~~~llp~l~~l~~-D~~~-VR~~aa~~L~~l~~~~~~~--~~~~~ 90 (318)
.+.+.++|.+|..|.+++..|..+....+. .....++++.+..++. |.+. ||.+++..++.++..+|.. .+...
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ 98 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASA 98 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 477888999999999999999999765321 1123578889988884 8777 9999999999999877653 24455
Q ss_pred cchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcc--hHHHH
Q psy14015 91 LLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG--VKAEL 168 (318)
Q Consensus 91 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~--~~~~l 168 (318)
++|.+...+.|....||.+|..++..++...+- ..++|.+...+++++|.+|..++..++.++...+.. ...
T Consensus 99 ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~-- 172 (242)
T 2qk2_A 99 CVPSLLEKFKEKKPNVVTALREAIDAIYASTSL----EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKK-- 172 (242)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHH--
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHH--
Confidence 889999999999999999999999999987753 347888888889999999999999998866554321 111
Q ss_pred HHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh
Q psy14015 169 RSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD 231 (318)
Q Consensus 169 ~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~ 231 (318)
....++|.+..+++|++++||.+|..+++.++..+|.+
T Consensus 173 -------------------------~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~ 210 (242)
T 2qk2_A 173 -------------------------LLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDK 210 (242)
T ss_dssp -------------------------HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHH
T ss_pred -------------------------HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHH
Confidence 22578999999999999999999999999999999964
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.62 E-value=5.2e-15 Score=142.93 Aligned_cols=284 Identities=13% Similarity=0.127 Sum_probs=206.6
Q ss_pred hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhC-h---HhHhhchhhhhhhhcCCh-HH-HHHHHHHHHcccccCcCc---
Q psy14015 14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALG-Q---ERTRGELIPFLTETIYDE-DE-VLLALAEQLGTFTPNVGG--- 84 (318)
Q Consensus 14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg-~---~~~~~~llp~l~~l~~D~-~~-VR~~aa~~L~~l~~~~~~--- 84 (318)
.++.+++.|+++++.+|..++..|..++...+ + .-....++|.+.+++.++ ++ +|..++..|..++..-..
T Consensus 88 ~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 167 (530)
T 1wa5_B 88 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 167 (530)
T ss_dssp CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 38899999999999999999999999864321 1 112456899999999875 56 999999999999762110
Q ss_pred ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh---hHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccC
Q psy14015 85 PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP---HDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVT 161 (318)
Q Consensus 85 ~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~ 161 (318)
.......+|.+..++.+++..||..|+.+|..++...+. ......++|.+.+++.+++..+|..|+..|+.++....
T Consensus 168 ~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 247 (530)
T 1wa5_B 168 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKK 247 (530)
T ss_dssp HHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSS
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCC
Confidence 011245788999999999999999999999999865322 11233578999999999889999999999998875431
Q ss_pred c----chHHHHHHHHHhhccCCCcccccc-hhhc---Cc--------cchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHH
Q psy14015 162 A----GVKAELRSHFRNLCQDDTPMQQGH-VWEC---GS--------GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELA 225 (318)
Q Consensus 162 ~----~~~~~l~~~~~~l~~~~~~~vR~~-v~~~---~~--------~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~ 225 (318)
. .....+...+..+..+.++.+|.. ++.+ .. .....++|.+..++.++++.||..++.+|+.++
T Consensus 248 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~ 327 (530)
T 1wa5_B 248 PQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 327 (530)
T ss_dssp SCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHH
Confidence 1 112233355556666666766653 1111 11 112357899999999999999999999999998
Q ss_pred HHhc---hhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhh----hhHhhHHHHHHhccccccccccCCCCC
Q psy14015 226 KVVE---VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD----VEQLVMPTLRQCSVQIVDHKFCPNNEF 298 (318)
Q Consensus 226 ~~~~---~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~----~~~~l~p~l~~ll~D~~~~~~~~~~~~ 298 (318)
..-+ .......++|.+..+++++++.||..++.+|+.++..- ++. ....++|.|..++.+ ++
T Consensus 328 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~----------~~ 396 (530)
T 1wa5_B 328 TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN-TEQIQAVIDANLIPPLVKLLEV----------AE 396 (530)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHH----------SC
T ss_pred cCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhc----------CC
Confidence 4221 11123468999999999999999999999999998632 222 124589999999999 67
Q ss_pred CchhhHHhhh
Q psy14015 299 HPLELHVISA 308 (318)
Q Consensus 299 ~~Vr~~~i~~ 308 (318)
+.||..++..
T Consensus 397 ~~v~~~a~~a 406 (530)
T 1wa5_B 397 YKTKKEACWA 406 (530)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777666543
No 24
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.62 E-value=2.3e-14 Score=138.37 Aligned_cols=258 Identities=13% Similarity=0.059 Sum_probs=195.2
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHhh---ChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCc---ccc
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALAL---GQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG---PEY 87 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~l---g~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~---~~~ 87 (318)
++.++..++++++.+|..++..|..++..- ........++|.+..++.+.++ ||..++..|..++..-+. ...
T Consensus 175 i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 254 (530)
T 1wa5_B 175 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSV 254 (530)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHH
Confidence 678888899999999999999999997431 1111234678889888887666 999999999999853211 123
Q ss_pred hhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh--hH-HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcch
Q psy14015 88 VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP--HD-LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGV 164 (318)
Q Consensus 88 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~~-~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~ 164 (318)
...++|.+..++.++++.||..|+.+|..++...+. +. +...++|.+.+++.++++.+|..|+..++.+...-.. .
T Consensus 255 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~-~ 333 (530)
T 1wa5_B 255 VSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDL-Q 333 (530)
T ss_dssp HGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH-H
T ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHH-H
Confidence 356889999999999999999999999999865332 11 2235789999999999999999999999877543211 1
Q ss_pred HHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch---hhhHhhHHHHH
Q psy14015 165 KAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV---DYLKTDIIPMF 241 (318)
Q Consensus 165 ~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~---~~~~~~llp~l 241 (318)
...+ ....++|.+..+++++++.+|+.|+.+|+.++..-.. ..+...++|.+
T Consensus 334 ~~~~-------------------------~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L 388 (530)
T 1wa5_B 334 TQVV-------------------------INAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL 388 (530)
T ss_dssp HHHH-------------------------HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHH
T ss_pred HHHH-------------------------HHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence 1111 1235789999999999999999999999999852111 11224588999
Q ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhCCh--hhh----hHhhHHHHHHhccccccccccCCCCCCchhhHHhhh
Q psy14015 242 VNLAQDEQDSVRLLAVEACVSIASLLSQ--SDV----EQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISA 308 (318)
Q Consensus 242 ~~ll~D~~~~VR~aa~~~l~~l~~~l~~--~~~----~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~ 308 (318)
..+++++++.||..++.+|++++...++ +.. ...++|.|..++.+ +++.||..+...
T Consensus 389 ~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~----------~~~~v~~~al~a 451 (530)
T 1wa5_B 389 VKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI----------ADNRIIEVTLDA 451 (530)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTT----------CCHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhC----------CCHHHHHHHHHH
Confidence 9999999999999999999999987554 322 23489999999999 788888776643
No 25
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.55 E-value=2e-13 Score=131.62 Aligned_cols=255 Identities=15% Similarity=0.115 Sum_probs=188.4
Q ss_pred chHHHHHHHhcCccHHHHHHHHHhHHHHHHhhC----hHhHhhchhhhhhhhcCChH-H-HHHHHHHHHcccccCcCccc
Q psy14015 13 YPIAVLIDELKNEDVQLRLNSIKKLSTIALALG----QERTRGELIPFLTETIYDED-E-VLLALAEQLGTFTPNVGGPE 86 (318)
Q Consensus 13 ~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg----~~~~~~~llp~l~~l~~D~~-~-VR~~aa~~L~~l~~~~~~~~ 86 (318)
..++.+++.|+++++.+|..++..|..++..-+ .......++|.|.+++.+++ + +|..++..|..++.. .+.
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~--~~~ 151 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASG--TSE 151 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS--CHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC--CHH
Confidence 348899999999999999999999999875432 11134578999999888765 5 999999999999862 111
Q ss_pred c-----hhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh--hH-HhhhHHHHHHHhh-cCCCchhhhhhhhhhhhhc
Q psy14015 87 Y-----VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP--HD-LEAHFVPLVQRLA-SGDWFTSRTSACGLFSVCY 157 (318)
Q Consensus 87 ~-----~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~~-~~~~ilp~~~~l~-~d~~~~vR~~a~~~l~~~~ 157 (318)
. ....+|.+..++.++++.||..|+.+|..++...+. .. .....+|.+.+++ +++++.+|..|+..|..++
T Consensus 152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 1 124788899999999999999999999999865332 11 2223677777877 6678899999988888665
Q ss_pred cccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch---hhhH
Q psy14015 158 PRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV---DYLK 234 (318)
Q Consensus 158 ~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~---~~~~ 234 (318)
........ .....++|.+..++.++++.||..++.+|+.++..-.. ..+.
T Consensus 232 ~~~~~~~~---------------------------~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~ 284 (528)
T 4b8j_A 232 RGKPQPSF---------------------------EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIE 284 (528)
T ss_dssp CSSSCCCH---------------------------HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred cCCCCCcH---------------------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44321100 12245789999999999999999999999999853211 1123
Q ss_pred hhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChh---hhhHhhHHHHHHhccccccccccCCCC-CCchhhHHh
Q psy14015 235 TDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS---DVEQLVMPTLRQCSVQIVDHKFCPNNE-FHPLELHVI 306 (318)
Q Consensus 235 ~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~---~~~~~l~p~l~~ll~D~~~~~~~~~~~-~~~Vr~~~i 306 (318)
..++|.+..+++++++.||..++.+|+.++..-... .....++|.+..++.+ + .+.||..++
T Consensus 285 ~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~----------~~~~~v~~~A~ 350 (528)
T 4b8j_A 285 AGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQ----------NLKKSIKKEAC 350 (528)
T ss_dssp TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHS----------CCCHHHHHHHH
T ss_pred cCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcC----------CCcHHHHHHHH
Confidence 357899999999999999999999999998632211 1123478999999998 5 666665554
No 26
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.53 E-value=7.1e-13 Score=127.72 Aligned_cols=258 Identities=14% Similarity=0.084 Sum_probs=193.8
Q ss_pred hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChH----hHhhchhhhhhhhc-CChHH-HHHHHHHHHcccccCcCc--c
Q psy14015 14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQE----RTRGELIPFLTETI-YDEDE-VLLALAEQLGTFTPNVGG--P 85 (318)
Q Consensus 14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~----~~~~~llp~l~~l~-~D~~~-VR~~aa~~L~~l~~~~~~--~ 85 (318)
-++.++..++++++.+|..++..|+.++.. ++. -.....+|.+..++ ++.++ ++..++..|..++..-.. .
T Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~ 239 (528)
T 4b8j_A 161 AVPIFVKLLGSSSDDVREQAVWALGNVAGD-SPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSF 239 (528)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHT-CHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-ChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcH
Confidence 467888999999999999999999999743 221 12235678888888 55555 999999999999864211 1
Q ss_pred cchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh--H-HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCc
Q psy14015 86 EYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH--D-LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA 162 (318)
Q Consensus 86 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~-~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~ 162 (318)
.....++|.+..++.++++.||..|+.+|..++...+.. . +...++|.+.+++.++++.+|..|+..++.+......
T Consensus 240 ~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~ 319 (528)
T 4b8j_A 240 EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDA 319 (528)
T ss_dssp HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHH
Confidence 233558899999999999999999999999998654321 1 2234789999999999999999999999877643211
Q ss_pred chHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCC-CHHHHHHHHHhhHHHHHHhch---hhhHhhHH
Q psy14015 163 GVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDD-TPMVRRAAAGKLGELAKVVEV---DYLKTDII 238 (318)
Q Consensus 163 ~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~-~~~VR~~aa~~L~~l~~~~~~---~~~~~~ll 238 (318)
....+ ....++|.+..+++++ ++.+|+.|+.+|+.++..-.. ..+...++
T Consensus 320 -~~~~~-------------------------~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i 373 (528)
T 4b8j_A 320 -QTQCI-------------------------IDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGII 373 (528)
T ss_dssp -HHHHH-------------------------HTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCH
T ss_pred -HHHHH-------------------------HHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCH
Confidence 11111 2245789999999998 999999999999999852111 11233678
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhh----HhhHHHHHHhccccccccccCCCCCCchhhHHhhh
Q psy14015 239 PMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE----QLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISA 308 (318)
Q Consensus 239 p~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~----~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~ 308 (318)
|.+..+++++++.+|..++.+|+.++..-+++... ..++|.|..++.+ ++++|+..++..
T Consensus 374 ~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~----------~d~~v~~~al~~ 437 (528)
T 4b8j_A 374 GPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLIC----------PDIRIVTVCLEG 437 (528)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC----------SCHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcC----------CCHHHHHHHHHH
Confidence 99999999999999999999999999774444322 3589999999999 788887766543
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.53 E-value=5.7e-13 Score=115.15 Aligned_cols=231 Identities=16% Similarity=0.089 Sum_probs=174.5
Q ss_pred chHHHHHHHhcCccHHHHHHHHHhHHHHHHhhCh---HhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCc---c
Q psy14015 13 YPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQ---ERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG---P 85 (318)
Q Consensus 13 ~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~---~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~---~ 85 (318)
..|+.+++.++++++.+|..++..|..++..-.. .......+|.+.++++++++ +|..++..|..++..-.. .
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 3578899999999999999999999999754221 11234678999999988766 999999999999752110 0
Q ss_pred cchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh--h-HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCc
Q psy14015 86 EYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP--H-DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA 162 (318)
Q Consensus 86 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~-~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~ 162 (318)
......+|.+..++.++++.+|..|+.+|..++...+. . ......+|.+.++++++++.+|..++..++.+...-.
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~- 160 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD- 160 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH-
Confidence 11234688899999999999999999999999964322 1 1223478999999999999999999999987754321
Q ss_pred chHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch---hhhHhhHHH
Q psy14015 163 GVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV---DYLKTDIIP 239 (318)
Q Consensus 163 ~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~---~~~~~~llp 239 (318)
..+..+ .....+|.+.++++++++.+|..++.+|+.++..-.. ......++|
T Consensus 161 ~~~~~~-------------------------~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~ 215 (252)
T 4hxt_A 161 EAIKAI-------------------------VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVE 215 (252)
T ss_dssp HHHHHH-------------------------HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHH
T ss_pred HHHHHH-------------------------HHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 111111 2245789999999999999999999999999852111 112345889
Q ss_pred HHHHhhcCCcHHHHHHHHHHHHHHHhhCCh
Q psy14015 240 MFVNLAQDEQDSVRLLAVEACVSIASLLSQ 269 (318)
Q Consensus 240 ~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~ 269 (318)
.+..+++++++.+|..++.++.+++..-+.
T Consensus 216 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 216 VLQKLLTSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence 999999999999999999999999975543
No 28
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=99.51 E-value=2.7e-15 Score=130.31 Aligned_cols=183 Identities=22% Similarity=0.212 Sum_probs=137.5
Q ss_pred HHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhh
Q psy14015 20 DELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESL 98 (318)
Q Consensus 20 ~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l 98 (318)
..++|+++.+|..+++.| ++ ..+..+++|+++ ||..++..|+ . +.+..+
T Consensus 57 ~ll~d~~~~VR~~AA~~l-------~~--------~~l~~L~~D~~~~VR~~aA~~L~-------~--------~~L~~l 106 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS-------PV--------EALTPLIRDSDEVVRRAVAYRLP-------R--------EQLSAL 106 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS-------CG--------GGGGGGTTCSSHHHHHHHHTTSC-------S--------GGGGGT
T ss_pred HHhcCCCHHHHHHHHHhC-------CH--------HHHHHHccCcCHHHHHHHHHHCC-------H--------HHHHHH
Confidence 345899999999999965 21 346788899888 9999997643 1 467888
Q ss_pred ccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccC
Q psy14015 99 ATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQD 178 (318)
Q Consensus 99 ~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~ 178 (318)
++|+++.||..++..+ +.+ .+..+++|+++.||..++..++ . ..+..+.+|
T Consensus 107 l~D~d~~VR~~aA~~l-------~~~--------~L~~L~~D~d~~VR~~aA~~l~-------~-------~~l~~l~~D 157 (244)
T 1lrv_A 107 MFDEDREVRITVADRL-------PLE--------QLEQMAADRDYLVRAYVVQRIP-------P-------GRLFRFMRD 157 (244)
T ss_dssp TTCSCHHHHHHHHHHS-------CTG--------GGGGGTTCSSHHHHHHHHHHSC-------G-------GGGGGTTTC
T ss_pred HcCCCHHHHHHHHHhC-------CHH--------HHHHHHcCCCHHHHHHHHHhcC-------H-------HHHHHHHcC
Confidence 9999999999988853 221 2456789999999999987532 1 235577888
Q ss_pred CCcccccchhh-cCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHH
Q psy14015 179 DTPMQQGHVWE-CGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAV 257 (318)
Q Consensus 179 ~~~~vR~~v~~-~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~ 257 (318)
..+.||..+.. ++ .+.+..+++|++|.||.+++.++ +. +.+..+++|++|.||.+++
T Consensus 158 ~d~~VR~~aa~~l~-------~~ll~~ll~D~d~~VR~aaa~~l-------~~--------~~L~~Ll~D~d~~VR~~aa 215 (244)
T 1lrv_A 158 EDRQVRKLVAKRLP-------EESLGLMTQDPEPEVRRIVASRL-------RG--------DDLLELLHDPDWTVRLAAV 215 (244)
T ss_dssp SCHHHHHHHHHHSC-------GGGGGGSTTCSSHHHHHHHHHHC-------CG--------GGGGGGGGCSSHHHHHHHH
T ss_pred CCHHHHHHHHHcCC-------HHHHHHHHcCCCHHHHHHHHHhC-------CH--------HHHHHHHcCCCHHHHHHHH
Confidence 88888874321 21 14566889999999999999874 21 3567889999999999999
Q ss_pred HHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCCCCchhhHHhhhh
Q psy14015 258 EACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISAT 309 (318)
Q Consensus 258 ~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~ 309 (318)
.+++ .+.+..| +| +++.||..++++.
T Consensus 216 ~~l~---------------~~~L~~L-~D----------~~~~VR~aa~~~L 241 (244)
T 1lrv_A 216 EHAS---------------LEALREL-DE----------PDPEVRLAIAGRL 241 (244)
T ss_dssp HHSC---------------HHHHHHC-CC----------CCHHHHHHHHCCC
T ss_pred HcCC---------------HHHHHHc-cC----------CCHHHHHHHHHHh
Confidence 8854 2566667 99 9999999988653
No 29
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.50 E-value=4.2e-13 Score=116.55 Aligned_cols=227 Identities=16% Similarity=0.137 Sum_probs=170.4
Q ss_pred CCchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChH----hHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCc-
Q psy14015 11 SLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQE----RTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG- 84 (318)
Q Consensus 11 ~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~----~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~- 84 (318)
.-.....+.+.|+++++.+|..++..|..+... .++ ......+|.+.++++++++ +|..++..|..++..-..
T Consensus 10 ~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (252)
T 4db8_A 10 HGSELPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (252)
T ss_dssp TTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 334477899999999999999999999776543 211 1234678999999988666 999999999999752110
Q ss_pred --ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh---HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccc
Q psy14015 85 --PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH---DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPR 159 (318)
Q Consensus 85 --~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~ 159 (318)
.......+|.+..++.++++.||..|+.+|..++...... ......+|.+.++++++++.+|..|+..++.+...
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 0112337888999999999999999999999998764332 12334899999999999999999999999877543
Q ss_pred cCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhc--h-hhhHhh
Q psy14015 160 VTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE--V-DYLKTD 236 (318)
Q Consensus 160 ~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~--~-~~~~~~ 236 (318)
-. .....+ .....+|.+.++++++++.+|..++.+|+.++..-. . ......
T Consensus 169 ~~-~~~~~~-------------------------~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 222 (252)
T 4db8_A 169 GN-EQIQAV-------------------------IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAG 222 (252)
T ss_dssp CH-HHHHHH-------------------------HHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred Ch-HHHHHH-------------------------HHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCC
Confidence 21 111111 123468999999999999999999999999984211 1 112335
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy14015 237 IIPMFVNLAQDEQDSVRLLAVEACVSIA 264 (318)
Q Consensus 237 llp~l~~ll~D~~~~VR~aa~~~l~~l~ 264 (318)
++|.+..+++++++.+|..++.+|.+++
T Consensus 223 ~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 223 ALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred cHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 8999999999999999999999988765
No 30
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.49 E-value=8.9e-13 Score=129.20 Aligned_cols=108 Identities=19% Similarity=0.253 Sum_probs=85.2
Q ss_pred CCCCchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccc
Q psy14015 9 DDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEY 87 (318)
Q Consensus 9 ~~~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~ 87 (318)
|..+.-+..+.+.++|+|+.+|..+++.|+.+. +++ ..+.+.|.+.+++.|.++ ||+.|+..+.++.+. .++.
T Consensus 82 e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~---~~~-~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~--~p~~ 155 (591)
T 2vgl_B 82 DMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR---VDK-ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDI--NAQM 155 (591)
T ss_dssp HHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC---SGG-GHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHS--SCCC
T ss_pred hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC---hHH-HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhh--Chhh
Confidence 333445667778899999999999988887753 333 667788889999999888 999999999998762 2233
Q ss_pred hh--ccchHHhhhccCchhHHHHHHHHHHHHHHhhCC
Q psy14015 88 VH--CLLPPLESLATVEETVVRDKAVESLRLISAQHS 122 (318)
Q Consensus 88 ~~--~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~ 122 (318)
.. .++|.+..++.|+++.||..|+.++..++..-+
T Consensus 156 ~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 156 VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHP 192 (591)
T ss_dssp HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCC
T ss_pred cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCC
Confidence 33 478899999999999999999999999987643
No 31
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.48 E-value=2.5e-13 Score=133.80 Aligned_cols=251 Identities=12% Similarity=0.082 Sum_probs=148.9
Q ss_pred CCCCCCCCchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcC
Q psy14015 5 DSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVG 83 (318)
Q Consensus 5 ~~~~~~~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~ 83 (318)
+..||..+.-+..+.+.++|+|+.+|..+++.|+.++ +++ ..+.++|.+.+++.|.++ ||++|+..+.++...
T Consensus 99 ~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~---~~~-~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~-- 172 (618)
T 1w63_A 99 DERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG---SSE-MCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRK-- 172 (618)
T ss_dssp CCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC---CHH-HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH--
T ss_pred CCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC---CHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH--
Confidence 3445545667888999999999999999999999974 333 667889999999999888 999999999998762
Q ss_pred cccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh-hHHhhhHHHHHHHhhcC---------------CCchhhh
Q psy14015 84 GPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP-HDLEAHFVPLVQRLASG---------------DWFTSRT 147 (318)
Q Consensus 84 ~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~-~~~~~~ilp~~~~l~~d---------------~~~~vR~ 147 (318)
.++..+.+++.+..++.|.+..|+..|+.++..++..-+. ......++|.+.+++++ .+.-.+.
T Consensus 173 ~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~ 252 (618)
T 1w63_A 173 VPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQV 252 (618)
T ss_dssp CGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHH
T ss_pred ChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHH
Confidence 3455567899999999999999999999999999865321 01122345544443321 1223344
Q ss_pred hhhhhhhhhccccCcchHHHHHHHHHhhccCC------Ccccccc----hhhcCc--cchHHHHHHHHHhhcCCCHHHHH
Q psy14015 148 SACGLFSVCYPRVTAGVKAELRSHFRNLCQDD------TPMQQGH----VWECGS--GVKAELRSHFRNLCQDDTPMVRR 215 (318)
Q Consensus 148 ~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~------~~~vR~~----v~~~~~--~~~~~ll~~l~~l~~D~~~~VR~ 215 (318)
.++.+++.+...- ......+.+.+..+++.. ++.|... +..+.. .......+.+..++.++++++|.
T Consensus 253 ~il~~L~~l~~~~-~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~ 331 (618)
T 1w63_A 253 RILRLLRILGRND-DDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRY 331 (618)
T ss_dssp HHHHHHHHHTTTC-HHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHH
T ss_pred HHHHHHHHhCCCC-HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHH
Confidence 4555555543321 111112222222222110 0011100 000110 11123455566666666667777
Q ss_pred HHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy14015 216 AAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIA 264 (318)
Q Consensus 216 ~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~ 264 (318)
.+..+|+.++..-+ .......+.+...++|++..||..+++.+..++
T Consensus 332 ~aL~~L~~i~~~~p--~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~ 378 (618)
T 1w63_A 332 VALTSLLKTVQTDH--NAVQRHRSTIVDCLKDLDVSIKRRAMELSFALV 378 (618)
T ss_dssp HHHHHHHHHHHHHH--HHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhCH--HHHHHHHHHHHHHccCCChhHHHHHHHHHHHHc
Confidence 77777777665421 112333444455555555555555555444443
No 32
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.42 E-value=6e-12 Score=108.65 Aligned_cols=218 Identities=16% Similarity=0.097 Sum_probs=162.8
Q ss_pred hhhhhhhcCChHH-HHHHHHHHHcccccCcCc---ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh--h-HH
Q psy14015 54 IPFLTETIYDEDE-VLLALAEQLGTFTPNVGG---PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP--H-DL 126 (318)
Q Consensus 54 lp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~---~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~-~~ 126 (318)
+|.+.++++++++ +|..++..|..++..-.. .......+|.+..++.+++..+|..|+.+|..++...+. . ..
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 5777777776556 999999999999753210 011234788899999999999999999999999865322 1 12
Q ss_pred hhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhh
Q psy14015 127 EAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLC 206 (318)
Q Consensus 127 ~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~ 206 (318)
....+|.+.+++++++..+|..|+..++.+...-. ..+..+ .....+|.+.+++
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~-------------------------~~~~~i~~L~~~l 137 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD-EAIKAI-------------------------VDAGGVEVLVKLL 137 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCH-HHHHHH-------------------------HHTTHHHHHHHHT
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH-HHHHHH-------------------------HHCCCHHHHHHHH
Confidence 23478999999999999999999999987754221 122221 2245789999999
Q ss_pred cCCCHHHHHHHHHhhHHHHHHhch---hhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhh----hhHhhHHH
Q psy14015 207 QDDTPMVRRAAAGKLGELAKVVEV---DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD----VEQLVMPT 279 (318)
Q Consensus 207 ~D~~~~VR~~aa~~L~~l~~~~~~---~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~----~~~~l~p~ 279 (318)
+++++.+|..++.+|+.++..-+. .......+|.+..+++++++.+|..++.++..++.. .++. ....++|.
T Consensus 138 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~ 216 (252)
T 4hxt_A 138 TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PTSAIKAIVDAGGVEV 216 (252)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-BHHHHHHHHHTTHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHH
Confidence 999999999999999999863211 112345899999999999999999999999999862 2221 12347899
Q ss_pred HHHhccccccccccCCCCCCchhhHHhhh
Q psy14015 280 LRQCSVQIVDHKFCPNNEFHPLELHVISA 308 (318)
Q Consensus 280 l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~ 308 (318)
+..++++ ++++||..+...
T Consensus 217 L~~ll~~----------~~~~v~~~a~~~ 235 (252)
T 4hxt_A 217 LQKLLTS----------TDSEVQKEAQRA 235 (252)
T ss_dssp HHHGGGC----------SCHHHHHHHHHH
T ss_pred HHHHHCC----------CcHHHHHHHHHH
Confidence 9999999 888888887744
No 33
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.41 E-value=3.4e-12 Score=125.03 Aligned_cols=245 Identities=14% Similarity=0.154 Sum_probs=179.0
Q ss_pred hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccc
Q psy14015 14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLL 92 (318)
Q Consensus 14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~ll 92 (318)
.+..+.+.|++.+...|..+++++--+ ..+|.+ ...+.+.+.+++++++. +|+.+...+..+++. .++....+.
T Consensus 14 e~~~i~~~L~~~~~~~k~~~~~kli~~-~~~G~d--~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~e~~~l~~ 88 (591)
T 2vgl_B 14 EIFELKAELNNEKKEKRKEAVKKVIAA-MTVGKD--VSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS--QPDMAIMAV 88 (591)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHH-HHTTCC--CGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH--SHHHHHTTH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHH-HHCCCC--hHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--CchHHHHHH
Confidence 478889999999999999888888754 346765 24567777788887666 999988888887652 233334456
Q ss_pred hHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHH
Q psy14015 93 PPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHF 172 (318)
Q Consensus 93 p~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~ 172 (318)
+.+..-++|+++.+|..|+.+++.+. .....+.++|.+.++++|+++.||..|+..+++++...++..
T Consensus 89 n~l~kdL~~~n~~ir~~AL~~L~~i~----~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~-------- 156 (591)
T 2vgl_B 89 NSFVKDCEDPNPLIRALAVRTMGCIR----VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV-------- 156 (591)
T ss_dssp HHHGGGSSSSSHHHHHHHHHHHHTCC----SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH--------
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCC----hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc--------
Confidence 67777789999999999988877764 234556688889999999999999999999887765332211
Q ss_pred HhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh---hhHhhHHHHHHHhhcCCc
Q psy14015 173 RNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD---YLKTDIIPMFVNLAQDEQ 249 (318)
Q Consensus 173 ~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~---~~~~~llp~l~~ll~D~~ 249 (318)
....+++.+.++++|+++.||.+|+.+|++++..-+.. ......++.+.+.+.|.+
T Consensus 157 ---------------------~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~ 215 (591)
T 2vgl_B 157 ---------------------EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECT 215 (591)
T ss_dssp ---------------------HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCC
T ss_pred ---------------------ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCC
Confidence 11357899999999999999999999999998643211 112234555556667888
Q ss_pred HHHHHHHHHHHHHHHhhCChh-hhhHhhHHHHHHhccccccccccCCCCCCchhhHHhhhh
Q psy14015 250 DSVRLLAVEACVSIASLLSQS-DVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISAT 309 (318)
Q Consensus 250 ~~VR~aa~~~l~~l~~~l~~~-~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~ 309 (318)
++.+..+++.++.++ +.+ .....+++.+..++++ .++.|++.+++..
T Consensus 216 ~~~q~~il~~l~~l~---~~~~~~~~~~l~~l~~~l~~----------~~~~V~~ea~~~i 263 (591)
T 2vgl_B 216 EWGQIFILDCLSNYN---PKDDREAQSICERVTPRLSH----------ANSAVVLSAVKVL 263 (591)
T ss_dssp HHHHHHHHHHHHTSC---CCSHHHHHHHHHHHTTCSCS----------STTHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHcC----------CChHHHHHHHHHH
Confidence 888887777654433 222 2345689999999999 7777877777553
No 34
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.41 E-value=7.2e-12 Score=109.45 Aligned_cols=192 Identities=11% Similarity=0.112 Sum_probs=139.4
Q ss_pred hhhhhhcCChHH-HHHHHHHHHcc-cccC----cC-cccchhccchHHhhhc-cCchhHHHHHHHHHHHHHHhhCC-hh-
Q psy14015 55 PFLTETIYDEDE-VLLALAEQLGT-FTPN----VG-GPEYVHCLLPPLESLA-TVEETVVRDKAVESLRLISAQHS-PH- 124 (318)
Q Consensus 55 p~l~~l~~D~~~-VR~~aa~~L~~-l~~~----~~-~~~~~~~llp~l~~l~-~d~~~~VR~~a~~~l~~l~~~~~-~~- 124 (318)
+.+.+.+++.+| -|+++...|.. ++.. .. ..++ ..++..+...+ +|.+..||..|+.++..+++.++ +.
T Consensus 19 ~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~-~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f 97 (249)
T 2qk1_A 19 KDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNY-SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGF 97 (249)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred hhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccc
Confidence 334445566777 78888877777 6531 10 1111 23566666666 78888899999999999998776 42
Q ss_pred --HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHH
Q psy14015 125 --DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHF 202 (318)
Q Consensus 125 --~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l 202 (318)
.+...++|.+...++|....||..+...+-.++...+.. .+. ..-+.+++.+
T Consensus 98 ~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~----------------~~~----------~~l~~ll~~l 151 (249)
T 2qk1_A 98 SKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL----------------ASS----------GRNEDMLKDI 151 (249)
T ss_dssp CHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTT----------------CTT----------CTTHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccc----------------ccC----------CcHHHHHHHH
Confidence 445568888888888887778876655554433322110 000 0135788999
Q ss_pred HHhhcCCCHHHHHHHHHhhHHHHHHhch--h---hhH-hhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhh
Q psy14015 203 RNLCQDDTPMVRRAAAGKLGELAKVVEV--D---YLK-TDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE 273 (318)
Q Consensus 203 ~~l~~D~~~~VR~~aa~~L~~l~~~~~~--~---~~~-~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~ 273 (318)
...+++.+|.+|..++..++.++...+. + ... ..++|.+.+++.|++..||.++.++++.++..+|.+...
T Consensus 152 ~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~ 228 (249)
T 2qk1_A 152 LEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFV 228 (249)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGH
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 9999999999999999999999988763 2 235 789999999999999999999999999999999987643
No 35
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.41 E-value=1.8e-12 Score=113.28 Aligned_cols=200 Identities=13% Similarity=0.177 Sum_probs=152.0
Q ss_pred HHHHHhcCccHHHHHHHHHhHHH-HHHhhCh----HhHhhchhhhhhhhc-CChHH-HHHHHHHHHcccccCcC-cc---
Q psy14015 17 VLIDELKNEDVQLRLNSIKKLST-IALALGQ----ERTRGELIPFLTETI-YDEDE-VLLALAEQLGTFTPNVG-GP--- 85 (318)
Q Consensus 17 ~l~~~l~~~~~~~R~~~~~~L~~-ia~~lg~----~~~~~~llp~l~~l~-~D~~~-VR~~aa~~L~~l~~~~~-~~--- 85 (318)
.+.+.++|.+|..|.+++..|.. +...... ..-..+++..+.+.+ .|.+. ||..++..++.++..++ ..
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 34577899999999999999999 7632111 111246788888888 78777 99999999999998776 32
Q ss_pred cchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHH---hhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCc
Q psy14015 86 EYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDL---EAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA 162 (318)
Q Consensus 86 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~---~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~ 162 (318)
.+...++|.+...++|....||.++..++..+++..++... .+.+++.+...+++++|.+|..++..++.++.....
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 23455888888888999999999999999999998854221 335777788888888999999999998877654332
Q ss_pred chHHHHHHHHHhhccCCCcccccchhhcCccch-HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHH
Q psy14015 163 GVKAELRSHFRNLCQDDTPMQQGHVWECGSGVK-AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMF 241 (318)
Q Consensus 163 ~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~-~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l 241 (318)
.. ..+.. .- +.++|.+.++++|.++.||.+|..+++.++..+|.+ .+.|++
T Consensus 180 ~~-~~l~~-----------------------~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~----~~~p~l 231 (249)
T 2qk1_A 180 GY-STLQR-----------------------YLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMN----TFVKTL 231 (249)
T ss_dssp CS-HHHHH-----------------------HHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSG----GGHHHH
T ss_pred cc-hhHHH-----------------------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHH----HHHHHH
Confidence 10 11101 12 567999999999999999999999999999999974 366667
Q ss_pred HHh
Q psy14015 242 VNL 244 (318)
Q Consensus 242 ~~l 244 (318)
..+
T Consensus 232 ~~L 234 (249)
T 2qk1_A 232 EHL 234 (249)
T ss_dssp HHS
T ss_pred HHH
Confidence 666
No 36
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.38 E-value=5e-11 Score=115.12 Aligned_cols=257 Identities=14% Similarity=0.127 Sum_probs=187.4
Q ss_pred hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChH----hHhhchhhhhhhhcCChH------HHHHHHHHHHcccccCcC
Q psy14015 14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQE----RTRGELIPFLTETIYDED------EVLLALAEQLGTFTPNVG 83 (318)
Q Consensus 14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~----~~~~~llp~l~~l~~D~~------~VR~~aa~~L~~l~~~~~ 83 (318)
.|+.++..+++++..+|..++..|+.++.. +++ -.....+|.+..++.+.+ .+.+.++..|..++..-.
T Consensus 163 aip~Lv~LL~s~~~~v~e~A~~aL~nLa~~-~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~ 241 (529)
T 3tpo_A 163 AIPAFISLLASPHAHISEQAVWALGNIAGA-GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN 241 (529)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCT
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcc-CHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhccc
Confidence 377888999999999999999999999743 222 122345677777765421 256777788887765322
Q ss_pred c---ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh--H-HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhc
Q psy14015 84 G---PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH--D-LEAHFVPLVQRLASGDWFTSRTSACGLFSVCY 157 (318)
Q Consensus 84 ~---~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~-~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~ 157 (318)
. ......++|.|..++.++++.|+..|..+|..++...... . ...-++|.+.+++.+++..++..++..++.+.
T Consensus 242 ~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~ 321 (529)
T 3tpo_A 242 PAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV 321 (529)
T ss_dssp TCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred chhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHH
Confidence 1 1223558899999999999999999999999998754321 1 22347889999999999999999999888775
Q ss_pred cccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch---hhhH
Q psy14015 158 PRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV---DYLK 234 (318)
Q Consensus 158 ~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~---~~~~ 234 (318)
..- +..+..+ .....++.+..+++++++.+|+.++.+|+.++..-.. ....
T Consensus 322 ~~~-~~~~~~i-------------------------~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~ 375 (529)
T 3tpo_A 322 TGT-DEQTQKV-------------------------IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVN 375 (529)
T ss_dssp TSC-HHHHHHH-------------------------HHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred ccc-hHHHHHH-------------------------hhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHh
Confidence 432 1111111 1234578899999999999999999999999852111 1123
Q ss_pred hhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhh----hHhhHHHHHHhccccccccccCCCCCCchhhHHhh
Q psy14015 235 TDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV----EQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVIS 307 (318)
Q Consensus 235 ~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~----~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~ 307 (318)
..++|.+..++++++..||..++.+|.+++..-..+.. ..-++|.|+.+|+. .+++++..+..
T Consensus 376 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~----------~d~~i~~~~L~ 442 (529)
T 3tpo_A 376 HGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA----------KDTKIIQVILD 442 (529)
T ss_dssp TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC----------SCHHHHHHHHH
T ss_pred cCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcC----------CCHHHHHHHHH
Confidence 45899999999999999999999999999876555432 23479999999998 77777766554
No 37
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.36 E-value=2.5e-11 Score=116.75 Aligned_cols=258 Identities=14% Similarity=0.124 Sum_probs=186.5
Q ss_pred hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChH----hHhhchhhhhhhhcCChH------HHHHHHHHHHcccccCcC
Q psy14015 14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQE----RTRGELIPFLTETIYDED------EVLLALAEQLGTFTPNVG 83 (318)
Q Consensus 14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~----~~~~~llp~l~~l~~D~~------~VR~~aa~~L~~l~~~~~ 83 (318)
.|+.++..|++++..+|..++..|+.++.. +++ -.....+|.+..++...+ .+.+.++..|..++..-.
T Consensus 144 aIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d-~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~ 222 (510)
T 3ul1_B 144 AIPAFISLLASPHAHISEQAVWALGNIAGD-GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN 222 (510)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCS
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhccc
Confidence 377899999999999999999999999743 111 123345677777765421 256777788887765322
Q ss_pred c---ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh--H-HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhc
Q psy14015 84 G---PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH--D-LEAHFVPLVQRLASGDWFTSRTSACGLFSVCY 157 (318)
Q Consensus 84 ~---~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~-~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~ 157 (318)
. -.....++|.+..++.++++.|+..|..+|..++...... . ...-++|.+.+++.+++..++..++..++.+.
T Consensus 223 ~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~ 302 (510)
T 3ul1_B 223 PAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV 302 (510)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhh
Confidence 1 1223558899999999999999999999999998654321 1 22347888999999999999999999888775
Q ss_pred cccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch---hhhH
Q psy14015 158 PRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV---DYLK 234 (318)
Q Consensus 158 ~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~---~~~~ 234 (318)
..-. ..+..+ .....++.+..++++++..+|+.++.+|+.++..-.. ....
T Consensus 303 ~~~~-~~~~~i-------------------------~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~ 356 (510)
T 3ul1_B 303 TGTD-EQTQKV-------------------------IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVN 356 (510)
T ss_dssp TSCH-HHHHHH-------------------------HHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred cCCH-HHHHHH-------------------------hhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHh
Confidence 4321 111111 1233567888899999999999999999999752111 1123
Q ss_pred hhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhh----hHhhHHHHHHhccccccccccCCCCCCchhhHHhhh
Q psy14015 235 TDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV----EQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISA 308 (318)
Q Consensus 235 ~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~----~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~ 308 (318)
..++|.+..++++++..||..++.+|.+++..-..+.. ..-.+|.|+.+|+. .+++++..+...
T Consensus 357 ~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~----------~d~~i~~~~L~a 424 (510)
T 3ul1_B 357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA----------KDTKIIQVILDA 424 (510)
T ss_dssp TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGC----------SCHHHHHHHHHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC----------CCHHHHHHHHHH
Confidence 45899999999999999999999999999976555432 23479999999999 777777666543
No 38
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.34 E-value=1e-11 Score=107.76 Aligned_cols=217 Identities=17% Similarity=0.148 Sum_probs=159.7
Q ss_pred hhhhhhhhcCChHH-HHHHHHHHHcccccCcCc----ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh--hH
Q psy14015 53 LIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG----PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP--HD 125 (318)
Q Consensus 53 llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~----~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~~ 125 (318)
-.|.+...++++++ +|..++..|..+... .. .......+|.+..++.++++.+|..|+.+|..++...+. ..
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 35666666666555 999999999665432 11 112234778899999999999999999999999864322 12
Q ss_pred -HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchH-HHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHH
Q psy14015 126 -LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVK-AELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFR 203 (318)
Q Consensus 126 -~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~-~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~ 203 (318)
...-.+|.+.++++++++.+|..|+..++.+...-. .+ ..+ .....+|.+.
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~-------------------------~~~~~i~~L~ 144 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN--EQIQAV-------------------------IDAGALPALV 144 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH--HHHHHH-------------------------HHTTHHHHHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc--hHHHHH-------------------------HHCCCHHHHH
Confidence 223489999999999999999999999987743211 11 111 2245789999
Q ss_pred HhhcCCCHHHHHHHHHhhHHHHHHhchh---hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhh----hhHhh
Q psy14015 204 NLCQDDTPMVRRAAAGKLGELAKVVEVD---YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD----VEQLV 276 (318)
Q Consensus 204 ~l~~D~~~~VR~~aa~~L~~l~~~~~~~---~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~----~~~~l 276 (318)
++++++++.||..++.+|+.++..-... .....++|.+..+++++++.||..++.++..++.. +++. ...-+
T Consensus 145 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~ 223 (252)
T 4db8_A 145 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQKQAVKEAGA 223 (252)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHCCc
Confidence 9999999999999999999998532111 12345789999999999999999999999999842 2221 22348
Q ss_pred HHHHHHhccccccccccCCCCCCchhhHHhhh
Q psy14015 277 MPTLRQCSVQIVDHKFCPNNEFHPLELHVISA 308 (318)
Q Consensus 277 ~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~ 308 (318)
+|.+..++.+ .+++||..+...
T Consensus 224 i~~L~~ll~~----------~~~~v~~~A~~~ 245 (252)
T 4db8_A 224 LEKLEQLQSH----------ENEKIQKEAQEA 245 (252)
T ss_dssp HHHHHTTTTC----------SSSHHHHTHHHH
T ss_pred HHHHHHHhCC----------CCHHHHHHHHHH
Confidence 8999999999 889999887744
No 39
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.30 E-value=3.2e-11 Score=115.99 Aligned_cols=282 Identities=12% Similarity=0.119 Sum_probs=194.1
Q ss_pred hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhC--h-Hh-HhhchhhhhhhhcCC-hHH-HHHHHHHHHcccccCcCcccc
Q psy14015 14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALG--Q-ER-TRGELIPFLTETIYD-EDE-VLLALAEQLGTFTPNVGGPEY 87 (318)
Q Consensus 14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg--~-~~-~~~~llp~l~~l~~D-~~~-VR~~aa~~L~~l~~~~~~~~~ 87 (318)
.|+.+++.++|+|...+..+++.+.++.+.-. | +. ...-++|.|.++++. +.+ ++..++..|..++. |.++.
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias--~~~e~ 135 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIAS--GTSEQ 135 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHT--SCHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhc--CCHHH
Confidence 38899999999999999999999998864421 1 12 234579999998864 445 99999999999975 22221
Q ss_pred -----hhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh--hH-HhhhHHHHHHHhhcCCCc-----hhhhhhhhhhh
Q psy14015 88 -----VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP--HD-LEAHFVPLVQRLASGDWF-----TSRTSACGLFS 154 (318)
Q Consensus 88 -----~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~~-~~~~ilp~~~~l~~d~~~-----~vR~~a~~~l~ 154 (318)
....+|.|..++.+++..||+.|+.+|..++...+. .. ...-.++.+..++.++.. .....++..+.
T Consensus 136 ~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~ 215 (510)
T 3ul1_B 136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS 215 (510)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHH
Confidence 223678999999999999999999999999865432 11 223367777777766432 23445666666
Q ss_pred hhccccCcc----hHHHHHHHHHhhccCCCcccccc-hhh---cCc--------cchHHHHHHHHHhhcCCCHHHHHHHH
Q psy14015 155 VCYPRVTAG----VKAELRSHFRNLCQDDTPMQQGH-VWE---CGS--------GVKAELRSHFRNLCQDDTPMVRRAAA 218 (318)
Q Consensus 155 ~~~~~~~~~----~~~~l~~~~~~l~~~~~~~vR~~-v~~---~~~--------~~~~~ll~~l~~l~~D~~~~VR~~aa 218 (318)
.++...... ....+...+..+..+.++.++.. ++. +.. .....++|.+.+++.++++.|+..++
T Consensus 216 nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al 295 (510)
T 3ul1_B 216 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 295 (510)
T ss_dssp HHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred HHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHH
Confidence 554432211 12334455666777777776652 221 111 12234679999999999999999999
Q ss_pred HhhHHHHHHhch---hhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChh---hhhHhhHHHHHHhccccccccc
Q psy14015 219 GKLGELAKVVEV---DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS---DVEQLVMPTLRQCSVQIVDHKF 292 (318)
Q Consensus 219 ~~L~~l~~~~~~---~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~---~~~~~l~p~l~~ll~D~~~~~~ 292 (318)
.+++.++..-.. ..+....+|.+..++++++..+|..++.++.+++..-... .....++|.+..++.+
T Consensus 296 ~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~------ 369 (510)
T 3ul1_B 296 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK------ 369 (510)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS------
T ss_pred HHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcC------
Confidence 999998642111 1122347788889999999999999999999997532111 1223589999999999
Q ss_pred cCCCCCCchhhHHhh
Q psy14015 293 CPNNEFHPLELHVIS 307 (318)
Q Consensus 293 ~~~~~~~~Vr~~~i~ 307 (318)
.+++||..++.
T Consensus 370 ----~~~~v~~~Aa~ 380 (510)
T 3ul1_B 370 ----ADFKTQKEAAW 380 (510)
T ss_dssp ----SCHHHHHHHHH
T ss_pred ----CCHHHHHHHHH
Confidence 77777766553
No 40
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.30 E-value=5.4e-11 Score=100.25 Aligned_cols=190 Identities=15% Similarity=0.114 Sum_probs=137.2
Q ss_pred hhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCc---ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh--
Q psy14015 50 RGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG---PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP-- 123 (318)
Q Consensus 50 ~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~---~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~-- 123 (318)
.....|.+..+++++++ +|..++..|..++..-.. .......+|.+..++.++++.+|..|+.+|..++...+.
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 34456777788877666 999999998888742110 011224678888888888999999999999998754322
Q ss_pred h-HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHH
Q psy14015 124 H-DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHF 202 (318)
Q Consensus 124 ~-~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l 202 (318)
. ......+|.+.+++++++..+|..|+..++.+...-. .....+ .....+|.+
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~-------------------------~~~~~i~~L 143 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQIQAV-------------------------IDAGALPAL 143 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-HHHHHH-------------------------HHTTHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCH-HHHHHH-------------------------HHcCcHHHH
Confidence 1 1223478899999999999999999999887754211 111111 224578999
Q ss_pred HHhhcCCCHHHHHHHHHhhHHHHHHhch---hhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHh
Q psy14015 203 RNLCQDDTPMVRRAAAGKLGELAKVVEV---DYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIAS 265 (318)
Q Consensus 203 ~~l~~D~~~~VR~~aa~~L~~l~~~~~~---~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~ 265 (318)
.++++++++.+|..++.+|+.++..-.. .......+|.+.+++++++..||..++.++..++.
T Consensus 144 ~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 144 VQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999863111 11233589999999999999999999999988763
No 41
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.29 E-value=1.1e-10 Score=114.89 Aligned_cols=286 Identities=11% Similarity=0.073 Sum_probs=186.1
Q ss_pred CCCCCCCCchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhc--CChHH-HHHHHHHHHcccccC
Q psy14015 5 DSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETI--YDEDE-VLLALAEQLGTFTPN 81 (318)
Q Consensus 5 ~~~~~~~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~--~D~~~-VR~~aa~~L~~l~~~ 81 (318)
+..||..+.-+..+.+.++|+|+.+|-.|++.|+.+. .++ ..+.+.|.+.+++ .|.++ ||+.|+-.+.++.+.
T Consensus 103 ~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~---~~e-~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~ 178 (621)
T 2vgl_A 103 NSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVG---SRE-MAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRT 178 (621)
T ss_dssp CCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC---CHH-HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccC---CHH-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 4455666667888999999999999999999999973 344 7788999999998 89888 999999999988763
Q ss_pred cCcccchh--ccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh--HHhhhHHHHHHHhhcCC-------------Cch
Q psy14015 82 VGGPEYVH--CLLPPLESLATVEETVVRDKAVESLRLISAQHSPH--DLEAHFVPLVQRLASGD-------------WFT 144 (318)
Q Consensus 82 ~~~~~~~~--~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~ilp~~~~l~~d~-------------~~~ 144 (318)
- ++... .+++.+..++.|.+..|+..|+..+..++..-+.. .....++..+.+++.+. ++-
T Consensus 179 ~--p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w 256 (621)
T 2vgl_A 179 S--PDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPW 256 (621)
T ss_dssp C--GGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHH
T ss_pred C--hhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCch
Confidence 2 23334 68889999999999999999999999998764321 12223444455554321 222
Q ss_pred hhhhhhhhhhhhccccCcchHHHHHHHHHhhccC--CCc------------cccc-c---hhhcC--ccchHHHHHHHHH
Q psy14015 145 SRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQD--DTP------------MQQG-H---VWECG--SGVKAELRSHFRN 204 (318)
Q Consensus 145 vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~--~~~------------~vR~-~---v~~~~--~~~~~~ll~~l~~ 204 (318)
.+....++++.+...-....+..+.+.+..+... ..| .|.- . +..+. +.........+..
T Consensus 257 ~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~ 336 (621)
T 2vgl_A 257 LSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQ 336 (621)
T ss_dssp HHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 4444555555443211112233232222222210 011 1000 0 00111 1223456677788
Q ss_pred hhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhc-CCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHh
Q psy14015 205 LCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQ-DEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQC 283 (318)
Q Consensus 205 l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~-D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~l 283 (318)
++.+.++++|..+..++..++...+.........+.+...++ |++..||..++..+..++ .+ ...+.++.-+...
T Consensus 337 ~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~---~~-~Nv~~Iv~eL~~y 412 (621)
T 2vgl_A 337 FLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMC---DR-SNAQQIVAEMLSY 412 (621)
T ss_dssp HSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHC---CH-HHHHHHHHHHHHH
T ss_pred HhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHc---Ch-hhHHHHHHHHHHH
Confidence 888889999999999999998654322233556666767677 999999998887766554 33 3455677777777
Q ss_pred ccccccccccCCCCCCchhhHHhhhhh
Q psy14015 284 SVQIVDHKFCPNNEFHPLELHVISATT 310 (318)
Q Consensus 284 l~D~~~~~~~~~~~~~~Vr~~~i~~~~ 310 (318)
+.+ .+++.|..++.++.
T Consensus 413 l~~----------~d~~~~~~~v~~I~ 429 (621)
T 2vgl_A 413 LET----------ADYSIREEIVLKVA 429 (621)
T ss_dssp HHH----------CCHHHHHHHHHHHH
T ss_pred HHh----------cCHHHHHHHHHHHH
Confidence 777 66677766666554
No 42
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.29 E-value=1.8e-11 Score=117.37 Aligned_cols=253 Identities=15% Similarity=0.110 Sum_probs=172.6
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccc-----h
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEY-----V 88 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~-----~ 88 (318)
++.+++.+++.+..+|..++..|..++...........++|.+.+++.++++ +|..++..|..++.. .+.. .
T Consensus 229 ~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~--~~~~~~~~~~ 306 (529)
T 1jdh_A 229 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN--NYKNKMMVCQ 306 (529)
T ss_dssp HHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT--CHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--CHHHHHHHHH
Confidence 5667778888889999999999999876533322345678999999888766 999999999999752 1111 1
Q ss_pred hccchHHhhhccC--chhHHHHHHHHHHHHHHhhCChh-----H-HhhhHHHHHHHhhcCCC-chhhhhhhhhhhhhccc
Q psy14015 89 HCLLPPLESLATV--EETVVRDKAVESLRLISAQHSPH-----D-LEAHFVPLVQRLASGDW-FTSRTSACGLFSVCYPR 159 (318)
Q Consensus 89 ~~llp~l~~l~~d--~~~~VR~~a~~~l~~l~~~~~~~-----~-~~~~ilp~~~~l~~d~~-~~vR~~a~~~l~~~~~~ 159 (318)
...+|.+..++.+ +++.+|..|+.+|..++...+.. . .....+|.+.++++++. +.+|..+++.++.+...
T Consensus 307 ~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~ 386 (529)
T 1jdh_A 307 VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386 (529)
T ss_dssp TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred cCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC
Confidence 2356677777654 33799999999999997654331 1 22246888889988876 68999999998877642
Q ss_pred cCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHH----------------
Q psy14015 160 VTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGE---------------- 223 (318)
Q Consensus 160 ~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~---------------- 223 (318)
...+..+ ....++|.+.++++++++.+|+.++++++.
T Consensus 387 --~~~~~~~-------------------------~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~ 439 (529)
T 1jdh_A 387 --PANHAPL-------------------------REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGC 439 (529)
T ss_dssp --GGGHHHH-------------------------HHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHH
T ss_pred --hhhhHHH-------------------------HHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHH
Confidence 2222222 224578888888888888888876655543
Q ss_pred ------HHHHhc--hhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhh----hhHhhHHHHHHhcccccccc
Q psy14015 224 ------LAKVVE--VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD----VEQLVMPTLRQCSVQIVDHK 291 (318)
Q Consensus 224 ------l~~~~~--~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~----~~~~l~p~l~~ll~D~~~~~ 291 (318)
++.... ........+|.+..++.|++..||..++.++..++.. ++. .....++.+..+++|
T Consensus 440 ~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~--~~~~~~i~~~~~~~~L~~l~~~----- 512 (529)
T 1jdh_A 440 TGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHS----- 512 (529)
T ss_dssp HHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTCHHHHHHGGGC-----
T ss_pred HHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC--HHHHHHHHHcCChHHHHHHhcC-----
Confidence 221100 0012234779999999999999999999999887732 211 123478999999999
Q ss_pred ccCCCCCCchhhHHhhh
Q psy14015 292 FCPNNEFHPLELHVISA 308 (318)
Q Consensus 292 ~~~~~~~~~Vr~~~i~~ 308 (318)
++++||..+...
T Consensus 513 -----~~~~v~~~a~~a 524 (529)
T 1jdh_A 513 -----RNEGVATYAAAV 524 (529)
T ss_dssp -----SSHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHH
Confidence 999999887643
No 43
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=99.29 E-value=1.8e-12 Score=112.50 Aligned_cols=163 Identities=21% Similarity=0.238 Sum_probs=120.1
Q ss_pred HHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHH
Q psy14015 17 VLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPL 95 (318)
Q Consensus 17 ~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l 95 (318)
.+...++|+++.||..++..| ++ +.+..+++|+++ ||..++..+. .+.+
T Consensus 78 ~l~~L~~D~~~~VR~~aA~~L-------~~--------~~L~~ll~D~d~~VR~~aA~~l~---------------~~~L 127 (244)
T 1lrv_A 78 ALTPLIRDSDEVVRRAVAYRL-------PR--------EQLSALMFDEDREVRITVADRLP---------------LEQL 127 (244)
T ss_dssp GGGGGTTCSSHHHHHHHHTTS-------CS--------GGGGGTTTCSCHHHHHHHHHHSC---------------TGGG
T ss_pred HHHHHccCcCHHHHHHHHHHC-------CH--------HHHHHHHcCCCHHHHHHHHHhCC---------------HHHH
Confidence 345567899999999999864 22 456788999888 9999998642 1346
Q ss_pred hhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhh
Q psy14015 96 ESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNL 175 (318)
Q Consensus 96 ~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l 175 (318)
..+++|++..||..++.. ++.+ .+..+.+|++|.||..++..++. ..+..+
T Consensus 128 ~~L~~D~d~~VR~~aA~~-------l~~~--------~l~~l~~D~d~~VR~~aa~~l~~--------------~ll~~l 178 (244)
T 1lrv_A 128 EQMAADRDYLVRAYVVQR-------IPPG--------RLFRFMRDEDRQVRKLVAKRLPE--------------ESLGLM 178 (244)
T ss_dssp GGGTTCSSHHHHHHHHHH-------SCGG--------GGGGTTTCSCHHHHHHHHHHSCG--------------GGGGGS
T ss_pred HHHHcCCCHHHHHHHHHh-------cCHH--------HHHHHHcCCCHHHHHHHHHcCCH--------------HHHHHH
Confidence 777899999999998873 2221 24467899999999998876431 234466
Q ss_pred ccCCCcccccchhh-cCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHH
Q psy14015 176 CQDDTPMQQGHVWE-CGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRL 254 (318)
Q Consensus 176 ~~~~~~~vR~~v~~-~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~ 254 (318)
.+|..+.||..+.. +. .+.+..+++|++|.||+.++.+++ .+.+..| +|++|.||.
T Consensus 179 l~D~d~~VR~aaa~~l~-------~~~L~~Ll~D~d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~ 235 (244)
T 1lrv_A 179 TQDPEPEVRRIVASRLR-------GDDLLELLHDPDWTVRLAAVEHAS---------------LEALREL-DEPDPEVRL 235 (244)
T ss_dssp TTCSSHHHHHHHHHHCC-------GGGGGGGGGCSSHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHH
T ss_pred HcCCCHHHHHHHHHhCC-------HHHHHHHHcCCCHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHH
Confidence 77777777763221 11 256788899999999999999976 2556678 999999999
Q ss_pred HHHHHHH
Q psy14015 255 LAVEACV 261 (318)
Q Consensus 255 aa~~~l~ 261 (318)
+++..++
T Consensus 236 aa~~~L~ 242 (244)
T 1lrv_A 236 AIAGRLG 242 (244)
T ss_dssp HHHCCC-
T ss_pred HHHHHhC
Confidence 9987653
No 44
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.27 E-value=2e-10 Score=110.08 Aligned_cols=260 Identities=10% Similarity=0.008 Sum_probs=168.3
Q ss_pred CCchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChH-hH--hhchhhhhhhhcC-ChHH-HHHHHHHHHcccccCcCc-
Q psy14015 11 SLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQE-RT--RGELIPFLTETIY-DEDE-VLLALAEQLGTFTPNVGG- 84 (318)
Q Consensus 11 ~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~-~~--~~~llp~l~~l~~-D~~~-VR~~aa~~L~~l~~~~~~- 84 (318)
...-++.+.+.|+++++.+|..++..|..++..-... .. ....+|.+.+++. ++++ +|..++..|..++..-..
T Consensus 15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~ 94 (529)
T 1jdh_A 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 94 (529)
T ss_dssp --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhH
Confidence 3345889999999999999999999999997431111 11 1246777777664 3344 999999999998652110
Q ss_pred -ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh--hHH-hhhHHHHHHHhhcCCCchhhhhhhhhhhhhcccc
Q psy14015 85 -PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP--HDL-EAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRV 160 (318)
Q Consensus 85 -~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~~~-~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~ 160 (318)
.......+|.+..++.++++.+|..|+.+|..++...+. ..+ ....+|.+.+++.++++.+|..++..+..+...
T Consensus 95 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~- 173 (529)
T 1jdh_A 95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG- 173 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhC-
Confidence 011234778889999999999999999999999987433 222 345899999999999999999888877755331
Q ss_pred CcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCC-HHHHHHHHHhhHHHHHHhc--hhhhHhhH
Q psy14015 161 TAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDT-PMVRRAAAGKLGELAKVVE--VDYLKTDI 237 (318)
Q Consensus 161 ~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~-~~VR~~aa~~L~~l~~~~~--~~~~~~~l 237 (318)
.+..+..+ .....++.+.+++.+.+ ..++..++..|..++..-+ ........
T Consensus 174 ~~~~~~~i-------------------------~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~ 228 (529)
T 1jdh_A 174 NQESKLII-------------------------LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG 228 (529)
T ss_dssp CHHHHHHH-------------------------HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTH
T ss_pred CHHHHHHH-------------------------HHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCC
Confidence 11222221 11234566666666544 3445555666655553111 01112346
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCCCCchhhHHh
Q psy14015 238 IPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVI 306 (318)
Q Consensus 238 lp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i 306 (318)
+|.+..++++++..+|..++.++..++...++......++|.+.+++.+ ++++||..+.
T Consensus 229 ~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~----------~~~~v~~~a~ 287 (529)
T 1jdh_A 229 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS----------DDINVVTCAA 287 (529)
T ss_dssp HHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTC----------SCHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcC----------CCHHHHHHHH
Confidence 7777777777777777777777777776554433344577777777777 5666665544
No 45
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.26 E-value=3.6e-10 Score=111.64 Aligned_cols=258 Identities=10% Similarity=0.009 Sum_probs=173.4
Q ss_pred chHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHh-H--hhchhhhhhhhcCC-hHH-HHHHHHHHHcccccCcCcc--
Q psy14015 13 YPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQER-T--RGELIPFLTETIYD-EDE-VLLALAEQLGTFTPNVGGP-- 85 (318)
Q Consensus 13 ~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~-~--~~~llp~l~~l~~D-~~~-VR~~aa~~L~~l~~~~~~~-- 85 (318)
--|+.+...|+++++.+|..++..|..++..-.... . ....+|.+.+++.+ +++ +|..++..|..++..-...
T Consensus 14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~ 93 (644)
T 2z6h_A 14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 93 (644)
T ss_dssp TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHH
Confidence 347889999999999999999999999986533221 1 12467777776654 344 9999999999876531110
Q ss_pred cchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh--HH-hhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCc
Q psy14015 86 EYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH--DL-EAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA 162 (318)
Q Consensus 86 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~-~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~ 162 (318)
......+|.+..++.++++.+|..|+.+|..++...+.. .+ ..-.+|.+.++++++++.++..++..|..+... ..
T Consensus 94 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~ 172 (644)
T 2z6h_A 94 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG-NQ 172 (644)
T ss_dssp HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-CH
T ss_pred HHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhc-Cc
Confidence 112347788999999999999999999999999775331 22 345899999999998888888887777765432 11
Q ss_pred chHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCC-HHHHHHHHHhhHHHHHHhch-h-hhHhhHHH
Q psy14015 163 GVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDT-PMVRRAAAGKLGELAKVVEV-D-YLKTDIIP 239 (318)
Q Consensus 163 ~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~-~~VR~~aa~~L~~l~~~~~~-~-~~~~~llp 239 (318)
..+..+ .....++.+.+++++.+ ..++..++..|..++..-.. + .+....+|
T Consensus 173 ~~~~~i-------------------------~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~ 227 (644)
T 2z6h_A 173 ESKLII-------------------------LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQ 227 (644)
T ss_dssp HHHHHH-------------------------HHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHH
T ss_pred HHHHHH-------------------------HHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHH
Confidence 222222 11234677777776654 56677777777766632110 1 12234677
Q ss_pred HHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCCCCchhhHHh
Q psy14015 240 MFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVI 306 (318)
Q Consensus 240 ~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i 306 (318)
.+..++++++..+|..++.++..++..-.+......++|.+..++++ ++++||..+.
T Consensus 228 ~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~----------~d~~v~~~a~ 284 (644)
T 2z6h_A 228 ALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS----------DDINVVTCAA 284 (644)
T ss_dssp HHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTC----------SCHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcC----------CCHHHHHHHH
Confidence 77777788788888888888888776544333334577888888887 5666665544
No 46
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.24 E-value=1.8e-10 Score=97.08 Aligned_cols=187 Identities=16% Similarity=0.072 Sum_probs=139.3
Q ss_pred chhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh---HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcc
Q psy14015 87 YVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH---DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG 163 (318)
Q Consensus 87 ~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~ 163 (318)
......|.+..++.++++.+|..|+.+|..++..-+.. ......+|.+.+++++++..+|..|+..++.+...-. .
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~ 87 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-E 87 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-H
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc-H
Confidence 34557788999999999999999999999998543221 1223478999999999999999999999987753211 1
Q ss_pred hHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch---hhhHhhHHHH
Q psy14015 164 VKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV---DYLKTDIIPM 240 (318)
Q Consensus 164 ~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~---~~~~~~llp~ 240 (318)
.+..+ .....+|.+.++++++++.+|..++.+|+.++..-.. .......+|.
T Consensus 88 ~~~~i-------------------------~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 142 (210)
T 4db6_A 88 QIQAV-------------------------IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPA 142 (210)
T ss_dssp HHHHH-------------------------HHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH
T ss_pred HHHHH-------------------------HHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHH
Confidence 11111 1234689999999999999999999999999852111 1123458999
Q ss_pred HHHhhcCCcHHHHHHHHHHHHHHHhhCChh---hhhHhhHHHHHHhccccccccccCCCCCCchhhHHhhhh
Q psy14015 241 FVNLAQDEQDSVRLLAVEACVSIASLLSQS---DVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISAT 309 (318)
Q Consensus 241 l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~---~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~ 309 (318)
+..++++++..+|..++.++.+++..-... -...-.+|.+.+++.+ +++.||..+....
T Consensus 143 L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----------~~~~v~~~a~~aL 204 (210)
T 4db6_A 143 LVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH----------ENEKIQKEAQEAL 204 (210)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGC----------SCHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhC----------CCHHHHHHHHHHH
Confidence 999999999999999999999998642211 1123488999999999 8999998887543
No 47
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.23 E-value=8.3e-10 Score=106.57 Aligned_cols=255 Identities=13% Similarity=0.144 Sum_probs=176.5
Q ss_pred hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhC--h--HhHhhchhhhhhhhcCC-hHH-HHHHHHHHHcccccCcCccc-
Q psy14015 14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALG--Q--ERTRGELIPFLTETIYD-EDE-VLLALAEQLGTFTPNVGGPE- 86 (318)
Q Consensus 14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg--~--~~~~~~llp~l~~l~~D-~~~-VR~~aa~~L~~l~~~~~~~~- 86 (318)
.++.+++.++++++..+..+++.+..+...-. + .-....++|.|.+++.. +.+ ++..++..|..++.. .+.
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~--~~~~ 154 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG--TSEQ 154 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS--CHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcC--CHHH
Confidence 37889999999999999999999988754311 1 11345689999988854 445 999999999999852 211
Q ss_pred ----chhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh--hH-HhhhHHHHHHHhhcCCCch-----hhhhhhhhhh
Q psy14015 87 ----YVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP--HD-LEAHFVPLVQRLASGDWFT-----SRTSACGLFS 154 (318)
Q Consensus 87 ----~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~~-~~~~ilp~~~~l~~d~~~~-----vR~~a~~~l~ 154 (318)
.....+|.|..++.+++..||+.|+.+|..++...+. .. ...-.+|.+..++.++... ....++..+
T Consensus 155 ~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L- 233 (529)
T 3tpo_A 155 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL- 233 (529)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHH-
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHH-
Confidence 1233678999999999999999999999999865322 11 2223677777777665322 122233333
Q ss_pred hhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch--h-
Q psy14015 155 VCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV--D- 231 (318)
Q Consensus 155 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~--~- 231 (318)
..+|....+... -.....++|.+.+++++++++|+..++.+|..++..-.. +
T Consensus 234 ------------------~nl~~~~~~~~~-------~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 288 (529)
T 3tpo_A 234 ------------------SNLCRNKNPAPP-------LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEM 288 (529)
T ss_dssp ------------------HHHHCCCTTCCC-------HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred ------------------HHHHhcccchhh-------HHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 333433322100 012356899999999999999999999999998853211 1
Q ss_pred hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChh---hhhHhhHHHHHHhccccccccccCCCCCCchhhHHh
Q psy14015 232 YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS---DVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVI 306 (318)
Q Consensus 232 ~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~---~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i 306 (318)
.....++|.+..++.++++.|+..++.+++.++..-... ....-.+|.+..++++ +.++||..++
T Consensus 289 v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~----------~~~~i~~~a~ 356 (529)
T 3tpo_A 289 VVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN----------PKTNIQKEAT 356 (529)
T ss_dssp HHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC----------SSHHHHHHHH
T ss_pred HHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcC----------CCHHHHHHHH
Confidence 123457899999999999999999999999987432111 1123478899999999 6666665544
No 48
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.21 E-value=5.2e-10 Score=112.96 Aligned_cols=246 Identities=10% Similarity=0.022 Sum_probs=149.5
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHh-H--hhchhhhhhhhcC-ChHH-HHHHHHHHHcccccCcCc--ccc
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQER-T--RGELIPFLTETIY-DEDE-VLLALAEQLGTFTPNVGG--PEY 87 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~-~--~~~llp~l~~l~~-D~~~-VR~~aa~~L~~l~~~~~~--~~~ 87 (318)
|+.++..|+++++.+|..++..|..++...+... . ....+|.|.+++. ++++ +|..++..|..++..-.. ...
T Consensus 152 ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~ 231 (780)
T 2z6g_A 152 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIF 231 (780)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHH
Confidence 5667777778888888888888888764321111 1 1246677666654 3244 888888888877542110 011
Q ss_pred hhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh--hHH-hhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcch
Q psy14015 88 VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP--HDL-EAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGV 164 (318)
Q Consensus 88 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~~~-~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~ 164 (318)
....+|.+..++.++++.||..|+.+|..++...+. ..+ ..-.+|.+.++++++++.+|..++..+..+... ..+.
T Consensus 232 ~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~-~~e~ 310 (780)
T 2z6g_A 232 KSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG-NQES 310 (780)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-CHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcC-ChHH
Confidence 234677788888888888888888888888876433 122 234778888888887777887777766544321 1112
Q ss_pred HHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHH-HHHHHHHhhHHHHHHhc--hhhhHhhHHHHH
Q psy14015 165 KAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPM-VRRAAAGKLGELAKVVE--VDYLKTDIIPMF 241 (318)
Q Consensus 165 ~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~-VR~~aa~~L~~l~~~~~--~~~~~~~llp~l 241 (318)
+..+ .....++.+.+++.+.+.+ ++..++..|..++..-. ...+...++|.+
T Consensus 311 ~~~i-------------------------~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~L 365 (780)
T 2z6g_A 311 KLII-------------------------LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQAL 365 (780)
T ss_dssp HHHH-------------------------HTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHH
T ss_pred HHHH-------------------------HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHH
Confidence 2111 1123466667777665543 44456666666653211 111123356777
Q ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccc
Q psy14015 242 VNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQ 286 (318)
Q Consensus 242 ~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D 286 (318)
..++++++..++..++.++..++....+......++|.|..++++
T Consensus 366 l~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~ 410 (780)
T 2z6g_A 366 GLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS 410 (780)
T ss_dssp GGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTC
T ss_pred HHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcC
Confidence 777777777777777777777776554433334577777777777
No 49
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=99.16 E-value=1.6e-10 Score=98.07 Aligned_cols=139 Identities=12% Similarity=0.028 Sum_probs=109.5
Q ss_pred hhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHH-hhcCCCchhhhhhhhhhhhhccccCcchHH
Q psy14015 88 VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQR-LASGDWFTSRTSACGLFSVCYPRVTAGVKA 166 (318)
Q Consensus 88 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~-l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~ 166 (318)
.+.+++++..|..++.+.||..|+..+..+ . . ...++|.+.. +..|++|+||..++..++.++.
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--~----~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~-------- 133 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--K----DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCK-------- 133 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--T----SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--C----cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH--------
Confidence 566889999999999999999999977766 3 1 1348999988 8899999999998887764432
Q ss_pred HHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhc
Q psy14015 167 ELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQ 246 (318)
Q Consensus 167 ~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~ 246 (318)
..+| +.+++.+...++|++..||+.|+..+--.+.........+.++|.+..+..
T Consensus 134 -----------~~~p--------------e~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~ 188 (240)
T 3l9t_A 134 -----------KIEY--------------KKALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKE 188 (240)
T ss_dssp -----------HHCT--------------TTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTT
T ss_pred -----------hcCH--------------HHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcC
Confidence 1111 235788999999999999999999875444322222334679999999999
Q ss_pred CCcHHHHHHHHHHHHHHHhh
Q psy14015 247 DEQDSVRLLAVEACVSIASL 266 (318)
Q Consensus 247 D~~~~VR~aa~~~l~~l~~~ 266 (318)
|++..||++++.+|..+++.
T Consensus 189 D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 189 DVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp CSCHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999964
No 50
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.16 E-value=2.3e-09 Score=108.23 Aligned_cols=270 Identities=13% Similarity=0.068 Sum_probs=170.5
Q ss_pred HHHHHHHhcC-ccHHHHHHHHHhHHHHHHhhCh--HhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCc--ccc-
Q psy14015 15 IAVLIDELKN-EDVQLRLNSIKKLSTIALALGQ--ERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG--PEY- 87 (318)
Q Consensus 15 i~~l~~~l~~-~~~~~R~~~~~~L~~ia~~lg~--~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~--~~~- 87 (318)
|+.+++.|++ +++.+|..++..|..++..-.. .......+|.|.+++++.++ +|..++..|..++..-.. ...
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~ 273 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVR 273 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHH
Confidence 6677778864 4899999999999997643111 11234678999999988776 999999999999753211 011
Q ss_pred hhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh---hHHhhhHHHHHHHhhcCCCch-hhhhhhhhhhhhccccCcc
Q psy14015 88 VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP---HDLEAHFVPLVQRLASGDWFT-SRTSACGLFSVCYPRVTAG 163 (318)
Q Consensus 88 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~ilp~~~~l~~d~~~~-vR~~a~~~l~~~~~~~~~~ 163 (318)
....+|.+..++.+++..+|..+..++..++..... .......++.+.+++.+.+.. .+..++.++..+.. ...
T Consensus 274 ~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~--~~~ 351 (780)
T 2z6g_A 274 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV--CSS 351 (780)
T ss_dssp HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT--STT
T ss_pred HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc--ChH
Confidence 245788899999988899999999998877742211 112223567677777765543 33344444443322 111
Q ss_pred hHHHH-----HHHHHhhccCCCcccccch-hh---c-----CccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhc
Q psy14015 164 VKAEL-----RSHFRNLCQDDTPMQQGHV-WE---C-----GSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE 229 (318)
Q Consensus 164 ~~~~l-----~~~~~~l~~~~~~~vR~~v-~~---~-----~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~ 229 (318)
.+..+ ...+..+..+..+.++..+ +. + .......++|.+.+++.++++.||..++.+|+.++..-.
T Consensus 352 ~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~ 431 (780)
T 2z6g_A 352 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 431 (780)
T ss_dssp HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence 12211 1222222233222222210 00 0 012346799999999999999999999999999875311
Q ss_pred h--hh-hHhhHHHHHHHhhcCC-c-HHHHHHHHHHHHHHHhhCChh-----h-hhHhhHHHHHHhccc
Q psy14015 230 V--DY-LKTDIIPMFVNLAQDE-Q-DSVRLLAVEACVSIASLLSQS-----D-VEQLVMPTLRQCSVQ 286 (318)
Q Consensus 230 ~--~~-~~~~llp~l~~ll~D~-~-~~VR~aa~~~l~~l~~~l~~~-----~-~~~~l~p~l~~ll~D 286 (318)
. .. .....+|.+..++.++ + ..||..++.+|+.++...+.. . .....+|.|..+|.+
T Consensus 432 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~ 499 (780)
T 2z6g_A 432 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHP 499 (780)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTST
T ss_pred HHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcC
Confidence 1 11 1234778888887763 3 389999999999997543331 1 123578999999998
No 51
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.14 E-value=8.7e-10 Score=111.04 Aligned_cols=137 Identities=17% Similarity=0.168 Sum_probs=87.3
Q ss_pred hHHHHHHHhcCcc--------HHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCc
Q psy14015 14 PIAVLIDELKNED--------VQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG 84 (318)
Q Consensus 14 ~i~~l~~~l~~~~--------~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~ 84 (318)
.++.+.+.+.+++ ..+|..++-.|+.+. +|.. .+++++.|..++.|++. +|..++-.|+.+----|.
T Consensus 430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~--~GS~--~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn 505 (963)
T 4ady_A 430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAA--MGSA--NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK 505 (963)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHS--TTCC--CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHh--cCCC--CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC
Confidence 3556677787665 678999999998864 3432 23456666666655555 888888888865211122
Q ss_pred ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCc
Q psy14015 85 PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA 162 (318)
Q Consensus 85 ~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~ 162 (318)
....+ .++..+..+.++.||+.++.+|+.+. ++.+.. +-+++..|..+.++.+|++++..++..+...+.
T Consensus 506 ~~ai~---~LL~~~~e~~~e~vrR~aalgLGll~--~g~~e~---~~~li~~L~~~~dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 506 PEAIH---DMFTYSQETQHGNITRGLAVGLALIN--YGRQEL---ADDLITKMLASDESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HHHHH---HHHHHHHHCSCHHHHHHHHHHHHHHT--TTCGGG---GHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC
T ss_pred HHHHH---HHHHHHhccCcHHHHHHHHHHHHhhh--CCChHH---HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC
Confidence 33333 34444445667889999888888763 222221 223344556788899999999888866655544
No 52
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.13 E-value=7.4e-09 Score=103.77 Aligned_cols=266 Identities=10% Similarity=0.046 Sum_probs=182.0
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHhhC-hHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCc----c---
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALG-QERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG----P--- 85 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg-~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~----~--- 85 (318)
++.++..+++++..++..++..+..++..-. .+...+.-+|.|..+++..+. +|..++..|.+++...+. +
T Consensus 292 v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~ 371 (810)
T 3now_A 292 LQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFG 371 (810)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSST
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchh
Confidence 6788899999999999999999999753310 111222224899998877655 999999999988743221 1
Q ss_pred -cchhccchHHhhhccCc--hhHHHHHHHHHHHHHHhhCCh-hHHh--hhHHHHHHHhhcCCCchhhhhhhhhhhhhccc
Q psy14015 86 -EYVHCLLPPLESLATVE--ETVVRDKAVESLRLISAQHSP-HDLE--AHFVPLVQRLASGDWFTSRTSACGLFSVCYPR 159 (318)
Q Consensus 86 -~~~~~llp~l~~l~~d~--~~~VR~~a~~~l~~l~~~~~~-~~~~--~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~ 159 (318)
.....+++.+..++.++ +.++|..|+++|.+++..... +.+. .-++|.+.++++++...+.+.|+..|+.+...
T Consensus 372 ~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~ 451 (810)
T 3now_A 372 DGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNA 451 (810)
T ss_dssp TTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTC
T ss_pred hccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCC
Confidence 12345788898888877 889999999999999865332 2222 24788888998888888999999999887653
Q ss_pred cCcchHHHHHHHHHhhccCCCcc------------cccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHH
Q psy14015 160 VTAGVKAELRSHFRNLCQDDTPM------------QQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKV 227 (318)
Q Consensus 160 ~~~~~~~~l~~~~~~l~~~~~~~------------vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~ 227 (318)
-...-+ + ..+.++++..... ++..+. .......+|.|.+++..+++.+|+.|+.+|+.++..
T Consensus 452 ~d~q~~--~-~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~---~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d 525 (810)
T 3now_A 452 YEKQEM--L-PEMIELAKFAKQHIPEEHELDDVDFINKRIT---VLANEGITTALCALAKTESHNSQELIARVLNAVCGL 525 (810)
T ss_dssp SCCCCC--C-CSCGGGTTTTCCSCCCSSCHHHHHHHHHHHH---HHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS
T ss_pred chhhhh--h-HHHHHHHHHhhccCccccccccHHHHHHHHH---HHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 211000 0 0011222221110 000000 011234789999999999999999999999999852
Q ss_pred hc-hh-hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhh-----hHhhHHHHHHhccc
Q psy14015 228 VE-VD-YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV-----EQLVMPTLRQCSVQ 286 (318)
Q Consensus 228 ~~-~~-~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~-----~~~l~p~l~~ll~D 286 (318)
-. .. .+..-.+|.+..++++.+..+|..++.+|..++..-.++.. ....+|.|..+|..
T Consensus 526 ~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~ 591 (810)
T 3now_A 526 KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQ 591 (810)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTST
T ss_pred HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCC
Confidence 11 11 22334899999999999999999999999999876554432 12378999999984
No 53
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.13 E-value=3.3e-09 Score=106.32 Aligned_cols=245 Identities=11% Similarity=0.082 Sum_probs=175.9
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHhhC--hHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCccc-----
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALG--QERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPE----- 86 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg--~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~----- 86 (318)
++.+...+++.++.+|..+++.|..++..-. ..-.....+|.|..++.+.+. +|..++..|.+++.......
T Consensus 497 Vp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~ 576 (810)
T 3now_A 497 TTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQ 576 (810)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcch
Confidence 7788899999999999999999999973210 011233467888888877655 99999999999874211111
Q ss_pred chhccchHHhhhccCc-hhHHHHHHHHHHHHHHhhCCh---hHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCc
Q psy14015 87 YVHCLLPPLESLATVE-ETVVRDKAVESLRLISAQHSP---HDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA 162 (318)
Q Consensus 87 ~~~~llp~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~---~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~ 162 (318)
.....+|.|..++..+ +...+..|+.+|..++...+. .-+....+|.+..++.+++..+|..|+..++.+... .
T Consensus 577 ~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~--~ 654 (810)
T 3now_A 577 RSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS--E 654 (810)
T ss_dssp HHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS--H
T ss_pred hhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--h
Confidence 1123677777787654 345566788899998875322 123334788999998888899999999999987642 2
Q ss_pred chHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhc--hhhhH--hhHH
Q psy14015 163 GVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE--VDYLK--TDII 238 (318)
Q Consensus 163 ~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~--~~~~~--~~ll 238 (318)
..+..+ . . ....++.+..+++.++..+|+.|+.+|+.++..-. .+.+. ...+
T Consensus 655 ~~~~~~----v---~-----------------~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I 710 (810)
T 3now_A 655 DVIKMF----E---G-----------------NNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWL 710 (810)
T ss_dssp HHHHHH----H---S-----------------SSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHH
T ss_pred HHHHHH----H---h-----------------ccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCH
Confidence 222221 1 0 02358999999999999999999999999997321 12233 4588
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhh----hhHhhHHHHHHhccc
Q psy14015 239 PMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD----VEQLVMPTLRQCSVQ 286 (318)
Q Consensus 239 p~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~----~~~~l~p~l~~ll~D 286 (318)
|.+..++++++..+|..++.++.+++.. +++. ...-.+|.|..++++
T Consensus 711 ~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~ 761 (810)
T 3now_A 711 DILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQL 761 (810)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCC
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhC
Confidence 9999999999999999999999999863 3332 223488999999987
No 54
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=99.12 E-value=6.8e-11 Score=92.68 Aligned_cols=117 Identities=12% Similarity=0.012 Sum_probs=89.2
Q ss_pred hHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcC
Q psy14015 129 HFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQD 208 (318)
Q Consensus 129 ~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D 208 (318)
...+.+..+++|+++.+|..|+..|+.+. . .. ++.+.++++|
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~----~---------------------------------~~-~~~L~~~L~d 53 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMG----D---------------------------------EA-FEPLLESLSN 53 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCS----S---------------------------------TT-HHHHHHGGGC
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhC----c---------------------------------hH-HHHHHHHHcC
Confidence 35667778889999999999988876431 1 11 4888899999
Q ss_pred CCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccc
Q psy14015 209 DTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIV 288 (318)
Q Consensus 209 ~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~ 288 (318)
+++.||..++.+|+.++. ...+|.+..+++|+++.||..++.+++.+. ....+|.|..+++|
T Consensus 54 ~~~~vR~~A~~aL~~~~~--------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~--------~~~a~~~L~~~l~d-- 115 (131)
T 1te4_A 54 EDWRIRGAAAWIIGNFQD--------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG--------GERVRAAMEKLAET-- 115 (131)
T ss_dssp SCHHHHHHHHHHHGGGCS--------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC--------SHHHHHHHHHHTTS--
T ss_pred CCHHHHHHHHHHHHhcCC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------cHHHHHHHHHHHhC--
Confidence 999999999999998753 346788888999999999999999999875 13468889999999
Q ss_pred cccccCCCCCCchhhHHhhhh
Q psy14015 289 DHKFCPNNEFHPLELHVISAT 309 (318)
Q Consensus 289 ~~~~~~~~~~~~Vr~~~i~~~ 309 (318)
+++.||..++...
T Consensus 116 --------~~~~vr~~A~~aL 128 (131)
T 1te4_A 116 --------GTGFARKVAVNYL 128 (131)
T ss_dssp --------CCTHHHHHHHHHG
T ss_pred --------CCHHHHHHHHHHH
Confidence 9999999988653
No 55
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.12 E-value=2.3e-09 Score=105.83 Aligned_cols=245 Identities=11% Similarity=0.039 Sum_probs=172.7
Q ss_pred HHHHHHHhcCc-cHHHHHHHHHhHHHHHHhhCh-Hh-HhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcc--c-c
Q psy14015 15 IAVLIDELKNE-DVQLRLNSIKKLSTIALALGQ-ER-TRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGP--E-Y 87 (318)
Q Consensus 15 i~~l~~~l~~~-~~~~R~~~~~~L~~ia~~lg~-~~-~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~--~-~ 87 (318)
++.+++.|++. ++.+|..++..|..++..-.. .. .....+|.+.++++++++ ++..++..|..++..-... . .
T Consensus 58 i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~ 137 (644)
T 2z6h_A 58 VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR 137 (644)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHH
Confidence 67788888754 889999999999987532111 11 223578899999988776 9999999999997532111 1 1
Q ss_pred hhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh--h-HHhhhHHHHHHHhhcCCC-chhhhhhhhhhhhhccccCcc
Q psy14015 88 VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP--H-DLEAHFVPLVQRLASGDW-FTSRTSACGLFSVCYPRVTAG 163 (318)
Q Consensus 88 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~-~~~~~ilp~~~~l~~d~~-~~vR~~a~~~l~~~~~~~~~~ 163 (318)
....+|.+..++.+++..++..++.+|..++...+. . ....-.+|.+.+++.+.. ...+..++..+..+.. ...
T Consensus 138 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~--~~~ 215 (644)
T 2z6h_A 138 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV--CSS 215 (644)
T ss_dssp HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--CTT
T ss_pred HCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc--Ccc
Confidence 245788999999988889999999999998853221 1 122346777778877654 4556666666655432 122
Q ss_pred hHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHH
Q psy14015 164 VKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVN 243 (318)
Q Consensus 164 ~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ 243 (318)
.+..+ .....++.+.+++++.+..+|..++..|..++...........++|.+..
T Consensus 216 ~~~~l-------------------------~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~ 270 (644)
T 2z6h_A 216 NKPAI-------------------------VEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ 270 (644)
T ss_dssp HHHHH-------------------------HHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHH
T ss_pred cHHHH-------------------------HHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHH
Confidence 22222 22346899999999999999999999999998654332233579999999
Q ss_pred hhcCCcHHHHHHHHHHHHHHHhhCCh--h-hhhHhhHHHHHHhccc
Q psy14015 244 LAQDEQDSVRLLAVEACVSIASLLSQ--S-DVEQLVMPTLRQCSVQ 286 (318)
Q Consensus 244 ll~D~~~~VR~aa~~~l~~l~~~l~~--~-~~~~~l~p~l~~ll~D 286 (318)
+++++++.||..++.++..++..-.. . -.....+|.++.++.+
T Consensus 271 lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~ 316 (644)
T 2z6h_A 271 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 316 (644)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHc
Confidence 99999999999999999999863111 1 1123478899999886
No 56
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.10 E-value=4.6e-09 Score=103.29 Aligned_cols=276 Identities=8% Similarity=0.018 Sum_probs=174.8
Q ss_pred hHHHHHHH---hcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchh
Q psy14015 14 PIAVLIDE---LKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVH 89 (318)
Q Consensus 14 ~i~~l~~~---l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~ 89 (318)
.+..++.. +++.+..+..++++.+..+.. .+ .......+.+..++.+.+. +|..+...|..++.. .+...+
T Consensus 275 ~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~--~~-~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~--~p~~~~ 349 (618)
T 1w63_A 275 ILAQVATNTETSKNVGNAILYETVLTIMDIKS--ES-GLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQT--DHNAVQ 349 (618)
T ss_dssp HHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC--CH-HHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHH--HHHHHG
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHhcCC--CH-HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhh--CHHHHH
Confidence 35555543 345566778888888776521 12 1233455566666665554 888888888888652 223334
Q ss_pred ccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHH
Q psy14015 90 CLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELR 169 (318)
Q Consensus 90 ~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~ 169 (318)
...+.+...+.|++..||..|++.+..+++.-+-+. +++.+.+++.+.+..+|..++..++.++.+.+... .+..
T Consensus 350 ~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~----iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~-~~~v 424 (618)
T 1w63_A 350 RHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRG----MMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSK-RWHI 424 (618)
T ss_dssp GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHH----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCH-HHHH
T ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHH----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccH-HHHH
Confidence 445566666778888888888888888877544332 44555555556667788888888888877664332 3333
Q ss_pred HHHHhhccCCCcccccchh-------hcCccchHHHHHHHHHhhcC--CCHHHHHHHHHhhHHHHHHhchh---------
Q psy14015 170 SHFRNLCQDDTPMQQGHVW-------ECGSGVKAELRSHFRNLCQD--DTPMVRRAAAGKLGELAKVVEVD--------- 231 (318)
Q Consensus 170 ~~~~~l~~~~~~~vR~~v~-------~~~~~~~~~ll~~l~~l~~D--~~~~VR~~aa~~L~~l~~~~~~~--------- 231 (318)
..+.++.++.+..|+..++ .-.+..+...++.+..++.+ ....+.+.+++.+|+++..+...
T Consensus 425 ~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~ 504 (618)
T 1w63_A 425 DTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQ 504 (618)
T ss_dssp HHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCC
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccC
Confidence 4444444444433333211 11234556667777766664 23445557999999999865320
Q ss_pred hhHhhHHHHHHHhhc--CCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCCCCchhhHHhhhh
Q psy14015 232 YLKTDIIPMFVNLAQ--DEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISAT 309 (318)
Q Consensus 232 ~~~~~llp~l~~ll~--D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~ 309 (318)
.....+++.+..+++ +.+..||..++.++..++..++.. .+.+...+..+..| .+++||-.+..-.
T Consensus 505 ~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~--~~~l~~~L~~~~~~----------~d~evrdRA~~y~ 572 (618)
T 1w63_A 505 VTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCT--VNRIKKVVSIYGSS----------IDVELQQRAVEYN 572 (618)
T ss_dssp CCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSC--HHHHHHHHHHHTTC----------SCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcch--HHHHHHHHHHhcCC----------CCHHHHHHHHHHH
Confidence 112357777888776 678999999999999999877542 45566667777777 8999999888654
Q ss_pred hh
Q psy14015 310 TL 311 (318)
Q Consensus 310 ~~ 311 (318)
.|
T Consensus 573 ~l 574 (618)
T 1w63_A 573 AL 574 (618)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 57
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=99.09 E-value=8.6e-12 Score=97.87 Aligned_cols=120 Identities=19% Similarity=0.164 Sum_probs=82.9
Q ss_pred hccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHH
Q psy14015 89 HCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAEL 168 (318)
Q Consensus 89 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l 168 (318)
..-.+.+..+++|+++.||..|+.+|..+... . +|.+.++++|+++.+|..|+..++.+.
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~--------~-~~~L~~~L~d~~~~vR~~A~~aL~~~~----------- 70 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE--------A-FEPLLESLSNEDWRIRGAAAWIIGNFQ----------- 70 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST--------T-HHHHHHGGGCSCHHHHHHHHHHHGGGC-----------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch--------H-HHHHHHHHcCCCHHHHHHHHHHHHhcC-----------
Confidence 33556677777888888888888777655321 1 366777788888888888888877542
Q ss_pred HHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCC
Q psy14015 169 RSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDE 248 (318)
Q Consensus 169 ~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~ 248 (318)
....++.+..+++|+++.||..++.+|+.++. ...+|.+..+++|+
T Consensus 71 --------------------------~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~ 116 (131)
T 1te4_A 71 --------------------------DERAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETG 116 (131)
T ss_dssp --------------------------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSC
T ss_pred --------------------------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCC
Confidence 13346778888889999999999999988752 34678888888899
Q ss_pred cHHHHHHHHHHHHH
Q psy14015 249 QDSVRLLAVEACVS 262 (318)
Q Consensus 249 ~~~VR~aa~~~l~~ 262 (318)
++.||..++.+|+.
T Consensus 117 ~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 117 TGFARKVAVNYLET 130 (131)
T ss_dssp CTHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHh
Confidence 99999988887653
No 58
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=99.03 E-value=2.5e-09 Score=90.82 Aligned_cols=129 Identities=15% Similarity=0.098 Sum_probs=104.6
Q ss_pred hhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHH-hh
Q psy14015 128 AHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRN-LC 206 (318)
Q Consensus 128 ~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~-l~ 206 (318)
+.+++....|.+++...+|..|+.+++.. . . ...+++.+.. +.
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--~---------------------------------~~~~L~~ir~~va 113 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--K---------------------------------DKEILIFMRDEVS 113 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--T---------------------------------SHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--C---------------------------------cHHHHHHHHHHhC
Confidence 34888899999999999999999988754 1 0 1456888887 89
Q ss_pred cCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccc
Q psy14015 207 QDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQ 286 (318)
Q Consensus 207 ~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D 286 (318)
+|++|.||..++.+++.++...+++ ..++.+...++|++.+||+++.+.+-..+.........+.++|.+..+..|
T Consensus 114 ~D~~WrVre~lA~a~~~~~~~~~pe----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D 189 (240)
T 3l9t_A 114 KDNNWRVQEVLAKAFDEFCKKIEYK----KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKED 189 (240)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHHCTT----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTC
T ss_pred CCCCccHHHHHHHHHHHHHHhcCHH----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCC
Confidence 9999999999999999999866664 377889999999999999999988765554322233446699999999999
Q ss_pred cccccccCCCCCCchhhHHh
Q psy14015 287 IVDHKFCPNNEFHPLELHVI 306 (318)
Q Consensus 287 ~~~~~~~~~~~~~~Vr~~~i 306 (318)
+...||-.|.
T Consensus 190 ----------~s~yVrKSVa 199 (240)
T 3l9t_A 190 ----------VSEYVRKSVG 199 (240)
T ss_dssp ----------SCHHHHHHHH
T ss_pred ----------hHHHHHHHHH
Confidence 8888887776
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.98 E-value=1.3e-08 Score=103.68 Aligned_cols=260 Identities=12% Similarity=0.139 Sum_probs=183.6
Q ss_pred CCchHHHHHHHhcCccHHHHHHHHHhHHHHHHh-hChHhHhhchhhhhhhhcCChHHHHHHHHHHHcccccCcCcc-cch
Q psy14015 11 SLYPIAVLIDELKNEDVQLRLNSIKKLSTIALA-LGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGP-EYV 88 (318)
Q Consensus 11 ~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~-lg~~~~~~~llp~l~~l~~D~~~VR~~aa~~L~~l~~~~~~~-~~~ 88 (318)
++..+..++..+...+...|..++..+...... .+.......++..+.+.+.|...- ..++..+..++...|.. ...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~-~~a~~~~~~~~~~~~~~~~~e 90 (986)
T 2iw3_A 12 SIKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA-ANAMQAVAHIANQSNLSPSVE 90 (986)
T ss_dssp HHHHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH-HHHHHHHHHHTCTTTCCTTTH
T ss_pred hHHHHHHHHhhccccchhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH-HHHHHHHHHHHHhcCCCCCcc
Confidence 445566677777765667788888888887442 111112235777777777775433 77778888888766542 222
Q ss_pred hc---cchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCC-CchhhhhhhhhhhhhccccCcch
Q psy14015 89 HC---LLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGD-WFTSRTSACGLFSVCYPRVTAGV 164 (318)
Q Consensus 89 ~~---llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~-~~~vR~~a~~~l~~~~~~~~~~~ 164 (318)
.+ ++|.+.....|....||.+|..+...++..++++.+ ..++|.+.+.+.+. .|..+..|..+++.+....+..+
T Consensus 91 ~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~ 169 (986)
T 2iw3_A 91 PYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQV 169 (986)
T ss_dssp HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHH
T ss_pred cchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHH
Confidence 22 567777788899999999999999999999999877 55888887766544 59999999999988765443222
Q ss_pred HHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh-------------
Q psy14015 165 KAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD------------- 231 (318)
Q Consensus 165 ~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~------------- 231 (318)
...+ .+++|.+...+.|-.++|.+++..++.+++..++..
T Consensus 170 ~~~~---------------------------~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~ 222 (986)
T 2iw3_A 170 ALRM---------------------------PELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCI 222 (986)
T ss_dssp HHHH---------------------------HHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHH
T ss_pred HHhc---------------------------cchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHh
Confidence 2222 667899999999999999999999888888766431
Q ss_pred ------------------------hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhh----HhhHHHHHHh
Q psy14015 232 ------------------------YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVE----QLVMPTLRQC 283 (318)
Q Consensus 232 ------------------------~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~----~~l~p~l~~l 283 (318)
....-+.|.+.+.+++++-.+++.++-.+.++++.+...... ..|+|.+.+.
T Consensus 223 ~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~ 302 (986)
T 2iw3_A 223 ADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSN 302 (986)
T ss_dssp HCTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHH
T ss_pred cChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHH
Confidence 123467888888888888888888888888999888664433 3345544443
Q ss_pred ccccccccccCCCCCCchhhHHhhh
Q psy14015 284 SVQIVDHKFCPNNEFHPLELHVISA 308 (318)
Q Consensus 284 l~D~~~~~~~~~~~~~~Vr~~~i~~ 308 (318)
.. ...+|+||-..-++
T Consensus 303 ~~---------~~~~pe~r~~~~~a 318 (986)
T 2iw3_A 303 FA---------TIADPEAREVTLRA 318 (986)
T ss_dssp TT---------TCCSHHHHHHHHHH
T ss_pred hh---------ccCCHHHHHHHHHH
Confidence 33 34688888766543
No 60
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.97 E-value=2.7e-08 Score=91.09 Aligned_cols=218 Identities=12% Similarity=0.088 Sum_probs=150.1
Q ss_pred cHHHHHHHHHhHHHHHHhhChHh----H--hhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccc-----hhccch
Q psy14015 26 DVQLRLNSIKKLSTIALALGQER----T--RGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEY-----VHCLLP 93 (318)
Q Consensus 26 ~~~~R~~~~~~L~~ia~~lg~~~----~--~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~-----~~~llp 93 (318)
++.++..++..|..++. +.+. . ..-.+|.|.+++..+++ ++..++..|..++..- .+.. ....+|
T Consensus 97 ~~~~q~~Aa~aL~nLa~--~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~-~~~~k~~i~~~G~Ip 173 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTF--GDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRA-DVNSKKTLREVGSVK 173 (354)
T ss_dssp HHHHHHHHHHHHHHHTS--SCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTC-CHHHHHHHHHTTHHH
T ss_pred CHHHHHHHHHHHHHHHc--CCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccC-CHHHHHHHHHCCCHH
Confidence 45678888888888863 2221 1 12458999998877655 9999999999987521 1111 123567
Q ss_pred HHhhh-ccCchhHHHHHHHHHHHHHHhhCCh--hHH--hhhHHHHHHHhhcCCCc----hhhhhhhhhhhhhcccc--Cc
Q psy14015 94 PLESL-ATVEETVVRDKAVESLRLISAQHSP--HDL--EAHFVPLVQRLASGDWF----TSRTSACGLFSVCYPRV--TA 162 (318)
Q Consensus 94 ~l~~l-~~d~~~~VR~~a~~~l~~l~~~~~~--~~~--~~~ilp~~~~l~~d~~~----~vR~~a~~~l~~~~~~~--~~ 162 (318)
.|..+ ....+..+++.|+.+|..++...+. ..+ ..-.+|.+.+++.++.. .++..|+..|..+...+ .+
T Consensus 174 ~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~ 253 (354)
T 3nmw_A 174 ALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNE 253 (354)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCH
Confidence 77775 5666788999999999999874422 222 23478888888876533 47777877776554321 12
Q ss_pred chHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHH-hc-hhh-hHhhHHH
Q psy14015 163 GVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKV-VE-VDY-LKTDIIP 239 (318)
Q Consensus 163 ~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~-~~-~~~-~~~~llp 239 (318)
..+..+ .....+|.+.+++.+.+..+++.|+.+|..++.. -. ... ...-.+|
T Consensus 254 ~~~~~i-------------------------~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~ 308 (354)
T 3nmw_A 254 DHRQIL-------------------------RENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVS 308 (354)
T ss_dssp HHHHHH-------------------------HTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHH
T ss_pred HHHHHH-------------------------HHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHH
Confidence 222221 2234689999999999999999999999999831 11 111 2234799
Q ss_pred HHHHhhcCCcHHHHHHHHHHHHHHHhhCChhh
Q psy14015 240 MFVNLAQDEQDSVRLLAVEACVSIASLLSQSD 271 (318)
Q Consensus 240 ~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~ 271 (318)
.+..++++++..+|..++.+|.+++..-+...
T Consensus 309 ~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~ 340 (354)
T 3nmw_A 309 MLKNLIHSKHKMIAMGSAAALRNLMANRPAKY 340 (354)
T ss_dssp HHHTTTTCSSHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999998754443
No 61
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.95 E-value=4e-08 Score=99.07 Aligned_cols=204 Identities=17% Similarity=0.116 Sum_probs=135.8
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccch
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLP 93 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp 93 (318)
+..++..+.+++...|..++-.|+.+-.--|.....+.|+.++. ++.++ +|+.++..|+.+. +|.++. +-+
T Consensus 474 ~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~---e~~~e~vrR~aalgLGll~--~g~~e~---~~~ 545 (963)
T 4ady_A 474 YEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQ---ETQHGNITRGLAVGLALIN--YGRQEL---ADD 545 (963)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHT--TTCGGG---GHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHh---ccCcHHHHHHHHHHHHhhh--CCChHH---HHH
Confidence 45667777778877887888887776322233334445554443 45455 9999999999763 455443 334
Q ss_pred HHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHH
Q psy14015 94 PLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFR 173 (318)
Q Consensus 94 ~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~ 173 (318)
++..|..++++.+|..++.++.--.--.+.... +-.++..+.+|.+..+|..|+..+|.+..+-.
T Consensus 546 li~~L~~~~dp~vRygaa~alglAyaGTGn~~a---Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~~------------ 610 (963)
T 4ady_A 546 LITKMLASDESLLRYGGAFTIALAYAGTGNNSA---VKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY------------ 610 (963)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH---HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH---HHHHHHHhccCCcHHHHHHHHHHHHhhccCCH------------
Confidence 455566688999999988776532222222221 22234445567778899999888886532211
Q ss_pred hhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHH
Q psy14015 174 NLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVR 253 (318)
Q Consensus 174 ~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR 253 (318)
+...+.+..+.++.++.||+.++.+||.++..-|. ..++..+..+++|++..||
T Consensus 611 ----------------------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~L~~D~d~~Vr 664 (963)
T 4ady_A 611 ----------------------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDPLTKDPVDFVR 664 (963)
T ss_dssp ----------------------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHHHTCSSHHHH
T ss_pred ----------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHHccCCCHHHH
Confidence 11223333466789999999999999988743232 4688899999999999999
Q ss_pred HHHHHHHHHHHhhC
Q psy14015 254 LLAVEACVSIASLL 267 (318)
Q Consensus 254 ~aa~~~l~~l~~~l 267 (318)
++|+.+++.+...-
T Consensus 665 q~Ai~ALG~Ig~gt 678 (963)
T 4ady_A 665 QAAMIALSMILIQQ 678 (963)
T ss_dssp HHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999888543
No 62
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.92 E-value=2.5e-08 Score=98.13 Aligned_cols=235 Identities=11% Similarity=0.074 Sum_probs=150.2
Q ss_pred hhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhc--cCchhHHHHHHHHHHHHHHhhCChhHHh-hh
Q psy14015 54 IPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLA--TVEETVVRDKAVESLRLISAQHSPHDLE-AH 129 (318)
Q Consensus 54 lp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~--~d~~~~VR~~a~~~l~~l~~~~~~~~~~-~~ 129 (318)
+..+.+=++|+++ +|..|.+.|+.+. .++..+.+.|.+..++ .|.++.||.+|+.++..+....+ +.+. +.
T Consensus 113 iN~l~kDl~~~n~~ir~lALr~L~~i~----~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p-~~~~~~~ 187 (621)
T 2vgl_A 113 NNAIKNDLASRNPTFMGLALHCIANVG----SREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP-DLVPMGD 187 (621)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHC----CHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG-GGCCCCS
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhccC----CHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh-hhcCchh
Confidence 3444444456667 9999999999874 3667788999999998 99999999999999999998643 3333 25
Q ss_pred HHHHHHHhhcCCCchhhhhhhhhhhhhccccCcc---hHHHHHHHHHhhccC--C-----------Ccccccchh----h
Q psy14015 130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG---VKAELRSHFRNLCQD--D-----------TPMQQGHVW----E 189 (318)
Q Consensus 130 ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~l~~~~~~l~~~--~-----------~~~vR~~v~----~ 189 (318)
+.+.+.++++|++..|+.+|+.++..++..-... .-..+...+..+... . +|+.+-++. .
T Consensus 188 ~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~ 267 (621)
T 2vgl_A 188 WTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQC 267 (621)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHH
Confidence 8888999999999999999999988776532221 111122223333211 1 222221111 1
Q ss_pred cCc----cchHHHHHHHHHhh---cC-C--------CH--HHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHH
Q psy14015 190 CGS----GVKAELRSHFRNLC---QD-D--------TP--MVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDS 251 (318)
Q Consensus 190 ~~~----~~~~~ll~~l~~l~---~D-~--------~~--~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~ 251 (318)
+++ ...+.+.+.+..++ .| + +. .|-..|+..+..+. ............+..++.+++..
T Consensus 268 ~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~---~~~~~~~~~~~~L~~~L~~~~~n 344 (621)
T 2vgl_A 268 YPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD---SEPNLLVRACNQLGQFLQHRETN 344 (621)
T ss_dssp SSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHSSCSCHH
T ss_pred hCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhcCCCcc
Confidence 111 12233333333322 22 1 22 45555555554442 12233456778888999999999
Q ss_pred HHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhcc-ccccccccCCCCCCchhhHHh
Q psy14015 252 VRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSV-QIVDHKFCPNNEFHPLELHVI 306 (318)
Q Consensus 252 VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~-D~~~~~~~~~~~~~~Vr~~~i 306 (318)
+|-.++.++..++..-+.....+...+.++.+++ | +++.||...+
T Consensus 345 iry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d----------~d~~Ir~~aL 390 (621)
T 2vgl_A 345 LRYLALESMCTLASSEFSHEAVKTHIETVINALKTE----------RDVSVRQRAV 390 (621)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTC----------CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccC----------CCHhHHHHHH
Confidence 9999999999998665422333455778888888 8 7888876655
No 63
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.91 E-value=5e-08 Score=92.43 Aligned_cols=254 Identities=12% Similarity=0.058 Sum_probs=161.0
Q ss_pred hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhCh---HhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccc--
Q psy14015 14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQ---ERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEY-- 87 (318)
Q Consensus 14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~---~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~-- 87 (318)
-|+.+...|+++++.++..++..|..++..-.+ .-.....+|.|.+++..+++ ++..++..|..++.. .+..
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~--~~~~k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR--STTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS--CHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--CHHHHH
Confidence 367888999999999999999999998732111 11234568999999887666 999999999999862 1222
Q ss_pred ---hhccchHHhhhcc-CchhHHHHHHHHHHHHHHhhCCh-hHHhhhHHHHHHHhh--------cCCC--------chhh
Q psy14015 88 ---VHCLLPPLESLAT-VEETVVRDKAVESLRLISAQHSP-HDLEAHFVPLVQRLA--------SGDW--------FTSR 146 (318)
Q Consensus 88 ---~~~llp~l~~l~~-d~~~~VR~~a~~~l~~l~~~~~~-~~~~~~ilp~~~~l~--------~d~~--------~~vR 146 (318)
....+|.|.+++. +.+..+++.|+.+|..++..-.. ..+.+-.+|.+.+++ .++. ..+.
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 2336788888888 77899999999999999976221 223336788888877 2222 2333
Q ss_pred hhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccch-HHHHHHHHHhhcC------CCHHHHHHHHH
Q psy14015 147 TSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVK-AELRSHFRNLCQD------DTPMVRRAAAG 219 (318)
Q Consensus 147 ~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~-~~ll~~l~~l~~D------~~~~VR~~aa~ 219 (318)
..|++.|..+... +..+..+ .. +..+|.+..++++ .+..+...++.
T Consensus 161 ~~a~~aL~nLs~~--~~~~~~i-------------------------~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~ 213 (457)
T 1xm9_A 161 FNATGCLRNLSSA--DAGRQTM-------------------------RNYSGLIDSLMAYVQNCVAASRCDDKSVENCMC 213 (457)
T ss_dssp HHHHHHHHHHTTS--HHHHHHH-------------------------TTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHH
T ss_pred HHHHHHHHHHccC--HHHHHHH-------------------------HHcCCCHHHHHHHHHhhccccCCchHHHHHHHH
Confidence 4666666655433 2222221 11 1355666655542 33344444444
Q ss_pred hhHHHHH----------------------------Hh------------------------chhhh-HhhHHHHHHHhhc
Q psy14015 220 KLGELAK----------------------------VV------------------------EVDYL-KTDIIPMFVNLAQ 246 (318)
Q Consensus 220 ~L~~l~~----------------------------~~------------------------~~~~~-~~~llp~l~~ll~ 246 (318)
.|..++. .+ |.+.+ ....+|.+..+++
T Consensus 214 ~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~ 293 (457)
T 1xm9_A 214 VLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMG 293 (457)
T ss_dssp HHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHH
T ss_pred HHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHh
Confidence 3433320 00 11222 2346777777776
Q ss_pred CC-cHHHHHHHHHHHHHHHhhCChh-------hh-hHhhHHHHHHhccccccccccCCCCCCchhhHHh
Q psy14015 247 DE-QDSVRLLAVEACVSIASLLSQS-------DV-EQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVI 306 (318)
Q Consensus 247 D~-~~~VR~aa~~~l~~l~~~l~~~-------~~-~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i 306 (318)
++ +..++..++.+|.+++..-++. .+ ....+|.+.++|.+ .+.+|+..++
T Consensus 294 ~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~----------~~~~v~~~A~ 352 (457)
T 1xm9_A 294 KSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQS----------GNSDVVRSGA 352 (457)
T ss_dssp HCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTC----------SCHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhC----------CCHhHHHHHH
Confidence 54 6899999999999998543321 11 23588999999999 6777776665
No 64
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.89 E-value=1.3e-08 Score=90.03 Aligned_cols=193 Identities=13% Similarity=0.066 Sum_probs=130.5
Q ss_pred CCchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhCh----Hh---HhhchhhhhhhhcCChHH-HHHHHHHHHcccccCc
Q psy14015 11 SLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQ----ER---TRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNV 82 (318)
Q Consensus 11 ~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~----~~---~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~ 82 (318)
.+..++ +.+.+.|.+|+.|..+++.|..+...... +. ....+.+.+...+.|.+. |...++..+..++..+
T Consensus 8 d~sklp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~ 86 (278)
T 4ffb_C 8 DYTTLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAF 86 (278)
T ss_dssp ---CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred hhhcCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHh
Confidence 344444 56899999999999999999887543221 11 123456778888889887 8888889998888766
Q ss_pred Cccc--------chhccchHHh-hhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhh
Q psy14015 83 GGPE--------YVHCLLPPLE-SLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLF 153 (318)
Q Consensus 83 ~~~~--------~~~~llp~l~-~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l 153 (318)
|... ....++|.+. ..+.|....+|..|.+++..++...... ..+++.+...++..++.+|..++..+
T Consensus 87 ~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~---~~~~e~l~~~l~~Knpkv~~~~l~~l 163 (278)
T 4ffb_C 87 ASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI---TQSVELVIPFFEKKLPKLIAAAANCV 163 (278)
T ss_dssp C---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS---HHHHHHHGGGGGCSCHHHHHHHHHHH
T ss_pred hhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 5321 2244566554 4578889999999999999998765431 12445556677889999999988888
Q ss_pred hhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh
Q psy14015 154 SVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD 231 (318)
Q Consensus 154 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~ 231 (318)
..++..++... .++. ...+.+++.+..++.|.++.||.+|...++.+-..+|+.
T Consensus 164 ~~~l~~fg~~~--------------~~~k----------~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 164 YELMAAFGLTN--------------VNVQ----------TFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp HHHHHHHTTTT--------------CCHH----------HHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHhCCCc--------------CCch----------hHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 76654332110 0000 012446677888899999999999999999999888853
No 65
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.83 E-value=1.3e-07 Score=83.41 Aligned_cols=184 Identities=16% Similarity=0.141 Sum_probs=130.3
Q ss_pred hhhhhhhcCChHH-HHHHHHHHHcccccCcCc----cc---chhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh-
Q psy14015 54 IPFLTETIYDEDE-VLLALAEQLGTFTPNVGG----PE---YVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH- 124 (318)
Q Consensus 54 lp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~----~~---~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~- 124 (318)
+| +.+-+.+..| .|..+.+.|..+...... .. ....+.+.+...+.|.+..|...+++++..++..++..
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 67 4567778999 999999998876543211 11 12346678888889999999999999999999876542
Q ss_pred -------HHhhhHHHHHHH-hhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchH
Q psy14015 125 -------DLEAHFVPLVQR-LASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKA 196 (318)
Q Consensus 125 -------~~~~~ilp~~~~-l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~ 196 (318)
.....++|.+.. .+.|....+|..+...+-.++. ... ...
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~-------------------~~~-------------~~~ 138 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCG-------------------LDT-------------SIT 138 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH-------------------TSS-------------SSH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH-------------------hcC-------------cHH
Confidence 123346666654 3566666677666554432221 111 124
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh-----hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChh
Q psy14015 197 ELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY-----LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 270 (318)
Q Consensus 197 ~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~-----~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~ 270 (318)
.+++.+...++..+|.+|..++..|..+...+|... ....+++.+..++.|++..||.++...+..+...+|+.
T Consensus 139 ~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 139 QSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp HHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 567788888999999999999999999999888643 23457778888999999999999999999999999864
No 66
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.82 E-value=1.3e-07 Score=84.36 Aligned_cols=168 Identities=16% Similarity=0.146 Sum_probs=122.3
Q ss_pred hHHHHHHHHHHHHHHhhCChh-HH-hhhHHHHHHH-hhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCC
Q psy14015 104 TVVRDKAVESLRLISAQHSPH-DL-EAHFVPLVQR-LASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180 (318)
Q Consensus 104 ~~VR~~a~~~l~~l~~~~~~~-~~-~~~ilp~~~~-l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~ 180 (318)
..-|..|+..|..+++..... .+ ..-.+|.+.. ++++++..+|..|+..++.+...- +..+..+
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n-~~~~~~v------------ 120 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNV-AAIQEQV------------ 120 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC-HHHHHHH------------
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-HHHHHHH------------
Confidence 356777888888888754321 11 2236777777 899999999999999999876432 1122222
Q ss_pred cccccchhhcCccchHHHHHHHHHhhc-CCCHHHHHHHHHhhHHHHHHhc--hhhh-HhhHHHHHHHhhcCCcHHHHHHH
Q psy14015 181 PMQQGHVWECGSGVKAELRSHFRNLCQ-DDTPMVRRAAAGKLGELAKVVE--VDYL-KTDIIPMFVNLAQDEQDSVRLLA 256 (318)
Q Consensus 181 ~~vR~~v~~~~~~~~~~ll~~l~~l~~-D~~~~VR~~aa~~L~~l~~~~~--~~~~-~~~llp~l~~ll~D~~~~VR~aa 256 (318)
.....+|.++++++ +++..+|+.|+++|+.++.... .+.+ ....+|.+..++++++..||..+
T Consensus 121 -------------v~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A 187 (296)
T 1xqr_A 121 -------------LGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKS 187 (296)
T ss_dssp -------------HHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred -------------HHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 22356899999988 5689999999999999985432 2222 34689999999999999999999
Q ss_pred HHHHHHHHhhCChhh----hhHhhHHHHHHhccccccccccCCCCCCchhhHHhhh
Q psy14015 257 VEACVSIASLLSQSD----VEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISA 308 (318)
Q Consensus 257 ~~~l~~l~~~l~~~~----~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~ 308 (318)
+.+|..++.. +++. ...-++|.|..+|.. +++.|+..+...
T Consensus 188 ~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~----------~d~~v~~~al~a 232 (296)
T 1xqr_A 188 AFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRT----------EHSPFHEHVLGA 232 (296)
T ss_dssp HHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTS----------CCSTHHHHHHHH
T ss_pred HHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcC----------CChhHHHHHHHH
Confidence 9999999876 3332 234589999999999 777777766643
No 67
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.78 E-value=2.7e-07 Score=87.19 Aligned_cols=214 Identities=12% Similarity=0.097 Sum_probs=146.7
Q ss_pred cHHHHHHHHHhHHHHHHhhChHh----H--hhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccc-----hhccch
Q psy14015 26 DVQLRLNSIKKLSTIALALGQER----T--RGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEY-----VHCLLP 93 (318)
Q Consensus 26 ~~~~R~~~~~~L~~ia~~lg~~~----~--~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~-----~~~llp 93 (318)
++.++..++..|..++. +.+. . ....+|.|.+++..+++ ++..++..|..++..- .+.. ....+|
T Consensus 213 ~~~l~~~Aa~aL~nLa~--~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~-~~~~k~~I~~~GaI~ 289 (458)
T 3nmz_A 213 SITLRRYAGMALTNLTF--GDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRA-DVNSKKTLREVGSVK 289 (458)
T ss_dssp HHHHHHHHHHHHHHHHT--TCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSC-CHHHHHHHHHTTHHH
T ss_pred CHHHHHHHHHHHHHHhC--CCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC-CHHHHHHHHHcCCHH
Confidence 35567777777777763 2221 1 13458999998877555 9999999999886421 1111 123567
Q ss_pred HHhhh-ccCchhHHHHHHHHHHHHHHhhCCh--hHH--hhhHHHHHHHhhcCCCc----hhhhhhhhhhhhhcccc--Cc
Q psy14015 94 PLESL-ATVEETVVRDKAVESLRLISAQHSP--HDL--EAHFVPLVQRLASGDWF----TSRTSACGLFSVCYPRV--TA 162 (318)
Q Consensus 94 ~l~~l-~~d~~~~VR~~a~~~l~~l~~~~~~--~~~--~~~ilp~~~~l~~d~~~----~vR~~a~~~l~~~~~~~--~~ 162 (318)
.|..+ ....+..+++.|+.++..++..... ..+ ..-.+|.+.+++.++.. .++..|+..|..+...+ .+
T Consensus 290 ~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~ 369 (458)
T 3nmz_A 290 ALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNE 369 (458)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCH
Confidence 77775 5556788999999999999875432 222 23478888888876532 47777877776654321 12
Q ss_pred chHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHH-hc-hh-hhHhhHHH
Q psy14015 163 GVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKV-VE-VD-YLKTDIIP 239 (318)
Q Consensus 163 ~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~-~~-~~-~~~~~llp 239 (318)
..+..+ .....+|.+.+++.+.+..+++.|+.+|+.++.. -. .. ....-.+|
T Consensus 370 ~~~~~i-------------------------~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~ 424 (458)
T 3nmz_A 370 DHRQIL-------------------------RENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVS 424 (458)
T ss_dssp HHHHHH-------------------------HHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHH
T ss_pred HHHHHH-------------------------HHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 222222 2234689999999999999999999999999831 11 11 12334799
Q ss_pred HHHHhhcCCcHHHHHHHHHHHHHHHhhC
Q psy14015 240 MFVNLAQDEQDSVRLLAVEACVSIASLL 267 (318)
Q Consensus 240 ~l~~ll~D~~~~VR~aa~~~l~~l~~~l 267 (318)
.+..+++..+..+|..++.+|.+++..-
T Consensus 425 ~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 425 MLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999998653
No 68
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.78 E-value=3.2e-07 Score=83.91 Aligned_cols=240 Identities=10% Similarity=0.055 Sum_probs=156.5
Q ss_pred HHHHHHHhHHHHHHhhChHh----HhhchhhhhhhhcC----------C-hHH-HHHHHHHHHcccccCcCcc-c-c--h
Q psy14015 29 LRLNSIKKLSTIALALGQER----TRGELIPFLTETIY----------D-EDE-VLLALAEQLGTFTPNVGGP-E-Y--V 88 (318)
Q Consensus 29 ~R~~~~~~L~~ia~~lg~~~----~~~~llp~l~~l~~----------D-~~~-VR~~aa~~L~~l~~~~~~~-~-~--~ 88 (318)
....++..|..++-. ++. .....+|.|..++. + ... ++..++..|..++..-... . . .
T Consensus 48 ~~~~A~~aL~nls~d--~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 48 QICPAVCVLMKLSFD--EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp THHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 344667777776522 110 11234555555552 2 234 9999999999998521111 1 1 1
Q ss_pred hccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh---hHHh-hhHHHHHHHh-hcCCCchhhhhhhhhhhhhccccCcc
Q psy14015 89 HCLLPPLESLATVEETVVRDKAVESLRLISAQHSP---HDLE-AHFVPLVQRL-ASGDWFTSRTSACGLFSVCYPRVTAG 163 (318)
Q Consensus 89 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~-~~ilp~~~~l-~~d~~~~vR~~a~~~l~~~~~~~~~~ 163 (318)
...+|.|..++.++++.+++.|+.+|..++..-+. ..+. .-.+|.+.++ ..+.+..++..|+..+..+.... +.
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~-~~ 204 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC-TE 204 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC-HH
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC-hh
Confidence 23589999999999999999999999999864222 2222 2367777775 56666778888777776553311 11
Q ss_pred hHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCH----HHHHHHHHhhHHHHHHh--chh---hh-
Q psy14015 164 VKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTP----MVRRAAAGKLGELAKVV--EVD---YL- 233 (318)
Q Consensus 164 ~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~----~VR~~aa~~L~~l~~~~--~~~---~~- 233 (318)
.+..+ + .....+|.+.+++.++.. .+++.++.+|..++..+ +++ .+
T Consensus 205 nk~~i-------~-----------------~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~ 260 (354)
T 3nmw_A 205 NKADI-------C-----------------AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR 260 (354)
T ss_dssp HHHHH-------H-----------------HSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHH-------H-----------------HhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 22221 0 024568999999987654 69999999999988632 122 12
Q ss_pred HhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhh----hHhhHHHHHHhccccccccccCCCCCCchhhHHh
Q psy14015 234 KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV----EQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVI 306 (318)
Q Consensus 234 ~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~----~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i 306 (318)
....+|.+..++++++..++..++.+|.+++.. .++.. ..-.+|.|..++.+ .++.+|.++.
T Consensus 261 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s----------~~~~i~~~A~ 326 (354)
T 3nmw_A 261 ENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHS----------KHKMIAMGSA 326 (354)
T ss_dssp TTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTTTTC----------SSHHHHHHHH
T ss_pred HcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHhC----------CCHHHHHHHH
Confidence 224789999999999999999999999999742 22221 12378999999998 6777776554
No 69
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.75 E-value=1.4e-07 Score=84.26 Aligned_cols=173 Identities=14% Similarity=0.037 Sum_probs=124.6
Q ss_pred HHHHHHHHHcccccCcCcc--cchhccchHHhh-hccCchhHHHHHHHHHHHHHHhhCCh--hH-HhhhHHHHHHHhhc-
Q psy14015 67 VLLALAEQLGTFTPNVGGP--EYVHCLLPPLES-LATVEETVVRDKAVESLRLISAQHSP--HD-LEAHFVPLVQRLAS- 139 (318)
Q Consensus 67 VR~~aa~~L~~l~~~~~~~--~~~~~llp~l~~-l~~d~~~~VR~~a~~~l~~l~~~~~~--~~-~~~~ilp~~~~l~~- 139 (318)
-|..++..|..++...... ......+|.+.. ++.++++.||..|+.++..++..-+. .. +..-.+|.+.++++
T Consensus 56 ~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~ 135 (296)
T 1xqr_A 56 EREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR 135 (296)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHcc
Confidence 5566666666666532110 111224566767 88999999999999999999875432 12 22347788888877
Q ss_pred CCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHH
Q psy14015 140 GDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAG 219 (318)
Q Consensus 140 d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~ 219 (318)
+++..+|..|++.++.++..... ....+ .....+|.+..++++++..+|+.++.
T Consensus 136 ~~~~~v~~~A~~ALsnl~~~~~~-~~~~~-------------------------~~~ggi~~L~~lL~~~d~~v~~~A~~ 189 (296)
T 1xqr_A 136 DACDTVRVKALFAISCLVREQEA-GLLQF-------------------------LRLDGFSVLMRAMQQQVQKLKVKSAF 189 (296)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHH-HHHHH-------------------------HHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcH-HHHHH-------------------------HHCCCHHHHHHHHcCCCHHHHHHHHH
Confidence 45778999999999877643221 11111 12346899999999999999999999
Q ss_pred hhHHHHHHhchh----hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhh
Q psy14015 220 KLGELAKVVEVD----YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASL 266 (318)
Q Consensus 220 ~L~~l~~~~~~~----~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~ 266 (318)
+|+.++.. +++ .+...++|.+..++++++..||..++.+++.++..
T Consensus 190 aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 190 LLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 99999875 222 22345899999999999999999999999999976
No 70
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.75 E-value=6.7e-07 Score=86.71 Aligned_cols=257 Identities=12% Similarity=0.123 Sum_probs=163.1
Q ss_pred hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhCh--Hh-HhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccc--
Q psy14015 14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALGQ--ER-TRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEY-- 87 (318)
Q Consensus 14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~--~~-~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~-- 87 (318)
.|+.++..|++.+..++..++..|..++..-.+ .. ...-.+|.|.+++...++ |+..++..|..++..-+ +..
T Consensus 49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~-~~nk~ 127 (584)
T 3l6x_A 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRD-QDNKI 127 (584)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSC-HHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCC-HHHHH
Confidence 388999999999999999999999888742111 11 223468999999887666 99999999999975211 111
Q ss_pred ---hhccchHHhhhccC-chhHHHHHHHHHHHHHHhhCC-hhHHhhhHHHHHHHhhc------------------CCCch
Q psy14015 88 ---VHCLLPPLESLATV-EETVVRDKAVESLRLISAQHS-PHDLEAHFVPLVQRLAS------------------GDWFT 144 (318)
Q Consensus 88 ---~~~llp~l~~l~~d-~~~~VR~~a~~~l~~l~~~~~-~~~~~~~ilp~~~~l~~------------------d~~~~ 144 (318)
....+|.|..++.+ .+..+++.|+.+|..++..-. +..+....+|.+.+++- .++..
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~ 207 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWES 207 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHH
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHH
Confidence 12356778888775 577899999999999987321 12233334666666541 12346
Q ss_pred hhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhc------CCCHHHHHHHH
Q psy14015 145 SRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ------DDTPMVRRAAA 218 (318)
Q Consensus 145 vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~------D~~~~VR~~aa 218 (318)
++..|+..|..+... .+..+..+.+ ..-+++.+..+++ +.+....+.|+
T Consensus 208 V~~nAa~~L~NLs~~-~~~~R~~i~~------------------------~~Gli~~LV~~L~~~~~~~~~~~~~~enav 262 (584)
T 3l6x_A 208 VLTNTAGCLRNVSSE-RSEARRKLRE------------------------CDGLVDALIFIVQAEIGQKDSDSKLVENCV 262 (584)
T ss_dssp HHHHHHHHHHHHTSS-CHHHHHHHHH------------------------STTHHHHHHHHHHHHHHTTCCSCHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHH------------------------cCCcHHHHHHHHHHhhcccCccHHHHHHHH
Confidence 777777777655321 1112222210 0223455555443 34566777777
Q ss_pred HhhHHHHHHh---------------------------chhhhH-hhHHHHHHHhhc-CCcHHHHHHHHHHHHHHHhhCCh
Q psy14015 219 GKLGELAKVV---------------------------EVDYLK-TDIIPMFVNLAQ-DEQDSVRLLAVEACVSIASLLSQ 269 (318)
Q Consensus 219 ~~L~~l~~~~---------------------------~~~~~~-~~llp~l~~ll~-D~~~~VR~aa~~~l~~l~~~l~~ 269 (318)
..|..++... |.++++ ...++.+..+++ ..++.++..++.+|..++..-++
T Consensus 263 ~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~ 342 (584)
T 3l6x_A 263 CLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWT 342 (584)
T ss_dssp HHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSH
T ss_pred HHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcc
Confidence 7776665332 112222 246777777775 45789999999999999853222
Q ss_pred hh-------hhHhhHHHHHHhccccccccccCCCCCCchhhHHh
Q psy14015 270 SD-------VEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVI 306 (318)
Q Consensus 270 ~~-------~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i 306 (318)
.. .....+|.|..+|.. +++.|+..++
T Consensus 343 ~~~~~~~~v~~~~glp~Lv~LL~s----------~~~~v~~~A~ 376 (584)
T 3l6x_A 343 YGRYIRSALRQEKALSAIADLLTN----------EHERVVKAAS 376 (584)
T ss_dssp HHHHHHHHHTSHHHHHHHHHGGGC----------SCHHHHHHHH
T ss_pred ccHHHHHHHHHcCcHHHHHHHHcC----------CCHHHHHHHH
Confidence 11 124579999999999 6666666655
No 71
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.69 E-value=4.5e-08 Score=89.15 Aligned_cols=241 Identities=12% Similarity=0.115 Sum_probs=125.2
Q ss_pred CCCCCchHHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCccc
Q psy14015 8 PDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPE 86 (318)
Q Consensus 8 ~~~~l~~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~ 86 (318)
++|-+.-+..+.+.++++|+.+|-.+++.|+.|. .++ ..+.+.+.+.+.+.|.++ ||++|+-...++.+. .++
T Consensus 99 ~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~---~~~-m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~--~pe 172 (355)
T 3tjz_B 99 AEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQIT---DST-MLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKC--SFD 172 (355)
T ss_dssp SSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHC---CTT-THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT--CHH
T ss_pred HHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCC---CHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc--CHH
Confidence 7888999999999999999999999999999983 333 667889999999999988 999999988887653 345
Q ss_pred chhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHH
Q psy14015 87 YVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKA 166 (318)
Q Consensus 87 ~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~ 166 (318)
..+.++..+..++.|.++.|-..|+..+..+.+.- .. ....+++. +..+. ...-++-+.++
T Consensus 173 ~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d-~~-a~~kLv~~---l~~~~-l~~~~~q~~ll------------- 233 (355)
T 3tjz_B 173 VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKND-RL-AVSKMISK---FTRHG-LKSPFAYCMMI------------- 233 (355)
T ss_dssp HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC-HH-HHHHHHHH---HHSSC-CSCHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc-hH-HHHHHHHH---HhcCC-CcChHHHHHHH-------------
Confidence 56778889999999999999888888888887542 11 12223333 32221 00001111111
Q ss_pred HHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhc
Q psy14015 167 ELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQ 246 (318)
Q Consensus 167 ~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~ 246 (318)
.....++....+ ...+.+++.+...++..++.|-..|++.+..+... +.. ......+.+..+++
T Consensus 234 ---r~l~~~~~~d~~-----------~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~-~~~-~~~~a~~~L~~fLs 297 (355)
T 3tjz_B 234 ---RVASRQLEDEDG-----------SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGC-SAK-ELAPAVSVLQLFCS 297 (355)
T ss_dssp ---HHHTCC----------------------------CCCCCSSHHHHHHHHHHHTC-------------CCCTHHHHHH
T ss_pred ---HHHHHhccccch-----------hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCC-CHH-HHHHHHHHHHHHHc
Confidence 111122222111 12244555566666666666666666666665442 111 12333445555555
Q ss_pred CCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhcccccccc
Q psy14015 247 DEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHK 291 (318)
Q Consensus 247 D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~ 291 (318)
.+++.+|-+++..+..+...-+.. .. ..-..+..+++|++...
T Consensus 298 s~d~niryvaLr~L~~l~~~~P~~-v~-~~n~~ie~li~d~n~sI 340 (355)
T 3tjz_B 298 SPKAALRYAAVRTLNKVAMKHPSA-VT-ACNLDLENLVTDANRSI 340 (355)
T ss_dssp SSSSSSHHHHHHCC-------------------------------
T ss_pred CCCchHHHHHHHHHHHHHHHCcHH-HH-HHHHHHHHHccCCcHhH
Confidence 566666666666666666543332 11 12233556666655443
No 72
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.69 E-value=8e-07 Score=77.50 Aligned_cols=74 Identities=8% Similarity=0.034 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHH---HHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhh
Q psy14015 196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDII---PMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD 271 (318)
Q Consensus 196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~ll---p~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~ 271 (318)
..+.+.+.+.+++.+|++|..++..++.+.+..|... ...+ |.+.+++.|++..||.+|..++..+-...|...
T Consensus 166 ~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v 242 (266)
T 2of3_A 166 LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP--LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM 242 (266)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG--GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc--cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 3455666666677777777777777777777777542 3455 777777777777777777777777777666653
No 73
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.62 E-value=1.1e-06 Score=83.09 Aligned_cols=270 Identities=15% Similarity=0.110 Sum_probs=162.9
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHh----HhhchhhhhhhhcC-ChHH-HHHHHHHHHcccccCcCc-ccc
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQER----TRGELIPFLTETIY-DEDE-VLLALAEQLGTFTPNVGG-PEY 87 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~----~~~~llp~l~~l~~-D~~~-VR~~aa~~L~~l~~~~~~-~~~ 87 (318)
|+.+.+.|+++++.++..++..|..++.. .++. ...-.+|.|.+++. ..++ ++..++..|..++..-.. ...
T Consensus 46 i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~-~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i 124 (457)
T 1xm9_A 46 ICKLVDLLRSPNQNVQQAAAGALRNLVFR-STTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEEL 124 (457)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHH
Confidence 78899999999999999999999999752 1221 12345889989887 5455 999999999999864111 112
Q ss_pred hhccchHHhhhc--------cCc--------hhHHHHHHHHHHHHHHhhCCh--hHHhh--hHHHHHHHhhcC------C
Q psy14015 88 VHCLLPPLESLA--------TVE--------ETVVRDKAVESLRLISAQHSP--HDLEA--HFVPLVQRLASG------D 141 (318)
Q Consensus 88 ~~~llp~l~~l~--------~d~--------~~~VR~~a~~~l~~l~~~~~~--~~~~~--~ilp~~~~l~~d------~ 141 (318)
.+..+|.|..++ .++ +..|...|+.+|..++.. +. ..+.+ -.+|.+..++++ .
T Consensus 125 ~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 203 (457)
T 1xm9_A 125 IADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRC 203 (457)
T ss_dssp HHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCT
T ss_pred HhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCC
Confidence 225677777777 222 345566899999999875 22 12222 366767666553 2
Q ss_pred CchhhhhhhhhhhhhccccCcc--hHHH--------------HHHHHHhhcc------CCCcc---cccchhhcCccchH
Q psy14015 142 WFTSRTSACGLFSVCYPRVTAG--VKAE--------------LRSHFRNLCQ------DDTPM---QQGHVWECGSGVKA 196 (318)
Q Consensus 142 ~~~vR~~a~~~l~~~~~~~~~~--~~~~--------------l~~~~~~l~~------~~~~~---vR~~v~~~~~~~~~ 196 (318)
+..+...++..+..+..+.... .... ....|..... ...|. ++. .......+..
T Consensus 204 ~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~ 282 (457)
T 1xm9_A 204 DDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETN-PKGSGWLYHS 282 (457)
T ss_dssp TCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSS-CCGGGGGGSH
T ss_pred chHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccC-chHHHHHhCc
Confidence 3344444544444432111000 0000 0000100000 00000 000 0000012346
Q ss_pred HHHHHHHHhhcC-CCHHHHHHHHHhhHHHHHHhch-------hhh-HhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhC
Q psy14015 197 ELRSHFRNLCQD-DTPMVRRAAAGKLGELAKVVEV-------DYL-KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLL 267 (318)
Q Consensus 197 ~ll~~l~~l~~D-~~~~VR~~aa~~L~~l~~~~~~-------~~~-~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l 267 (318)
..++.+..++++ +++.++..++.+|+.++..-++ ..+ ....+|.+.+++++++..||..++.++..++..-
T Consensus 283 ~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~ 362 (457)
T 1xm9_A 283 DAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362 (457)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred chHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH
Confidence 678888888875 4699999999999999752211 112 1357899999999999999999999999998632
Q ss_pred Ch-hhhhHhhHHHHHHhcccc
Q psy14015 268 SQ-SDVEQLVMPTLRQCSVQI 287 (318)
Q Consensus 268 ~~-~~~~~~l~p~l~~ll~D~ 287 (318)
.- .......+|.|+.+|...
T Consensus 363 ~~~~~i~~~~i~~Lv~lL~~~ 383 (457)
T 1xm9_A 363 LLHRVMGNQVFPEVTRLLTSH 383 (457)
T ss_dssp GGHHHHHHHTHHHHHHTTTSC
T ss_pred HHHHHHHHhhhHHHHHhccCC
Confidence 11 122356899999999984
No 74
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.57 E-value=1.1e-06 Score=82.91 Aligned_cols=220 Identities=10% Similarity=0.014 Sum_probs=142.2
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccch
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLP 93 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp 93 (318)
-..+...|-++.|++|=.|+-.|.++.+..|...-+. . ..+.+- +|....-.|.+|+..++++..
T Consensus 176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~-------~-~~N~DLAvRLLCVLALDRFGDYVSDqVV------ 241 (800)
T 3oc3_A 176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ-------I-RVDSKLFSKIYEILVTDKFNDFVDDRTV------ 241 (800)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC-------C-CCCTTHHHHHHHHHHHBCCBBCSSSSCB------
T ss_pred HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee-------c-cccHHHHHHHHHHHHhccccccccCeee------
Confidence 4577788999999999999999999988766432111 1 112244 888888888888877765433
Q ss_pred HHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHH
Q psy14015 94 PLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFR 173 (318)
Q Consensus 94 ~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~ 173 (318)
.-||+.|..+|+.+ .+++++ . .++-.+......+.|.+|.++.-.+.-+ .
T Consensus 242 ----------APVRETaAQtLGaL-~hLp~e--~-~IL~qLV~~l~~~~WEVRHGGLLGLKYL----------------~ 291 (800)
T 3oc3_A 242 ----------APVRDAAAYLLSRI-YPLIGP--N-DIIEQLVGFLDSGDWQVQFSGLIALGYL----------------K 291 (800)
T ss_dssp ----------CHHHHHHHHHHHHH-TTTSCS--C-CHHHHHTTGGGCSCHHHHHHHHHHHHHT----------------G
T ss_pred ----------eehHHHHHHHHHHH-HhCChh--H-HHHHHHHhhcCCCCeeehhhhHHHHHHH----------------H
Confidence 46899999999999 888776 2 2333333445777899998874333211 0
Q ss_pred hhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh---hHhhHHHHHHHhhcCCcH
Q psy14015 174 NLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY---LKTDIIPMFVNLAQDEQD 250 (318)
Q Consensus 174 ~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~---~~~~llp~l~~ll~D~~~ 250 (318)
++.. ....+++.++..++|.+..||..||.+|--++ .++. +.+.+...+.++ .|=+.
T Consensus 292 DLL~----------------~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA---~p~~l~~LL~iLWd~L~~L-DDLSA 351 (800)
T 3oc3_A 292 EFVE----------------DKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP---ITDSLDLVLEKCWKNIESE-ELISV 351 (800)
T ss_dssp GGCC----------------CHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC---CSSTHHHHHHHHHHHHHTC-CSCCT
T ss_pred HHHH----------------HHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc---chhhHHHHHHHHHHHhhhh-cccch
Confidence 1111 12667899999999999999999999999888 3222 223344444443 33332
Q ss_pred HHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCCCCchhhHHhhhh
Q psy14015 251 SVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISAT 309 (318)
Q Consensus 251 ~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~ 309 (318)
. =.+.+.-++.++..=........++|.+.+++.- ..+.||..+.++.
T Consensus 352 S-TgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRH----------tITSVR~AVL~TL 399 (800)
T 3oc3_A 352 S-KTSNLSLLTKIYRENPELSIPPERLKDIFPCFTS----------PVPEVRTSILNMV 399 (800)
T ss_dssp T-HHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTC----------SSHHHHHHHHHHT
T ss_pred h-hHHHHHHHHHHHcCCcccccChHHHHHHHhhhcC----------CcHHHHHHHHHHH
Confidence 2 2333344444443221111223789999999999 8899999888653
No 75
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.54 E-value=4.4e-06 Score=78.90 Aligned_cols=203 Identities=10% Similarity=0.065 Sum_probs=140.5
Q ss_pred HHHHHHHHHcccccCcCccc----c--hhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh---hHHh-hhHHHHHHH
Q psy14015 67 VLLALAEQLGTFTPNVGGPE----Y--VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP---HDLE-AHFVPLVQR 136 (318)
Q Consensus 67 VR~~aa~~L~~l~~~~~~~~----~--~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~-~~ilp~~~~ 136 (318)
++..++..|..++. +.+. . ....+|.|..++.++++.|++.|+.+|..++..-+. ..+. .-.+|.+.+
T Consensus 216 l~~~Aa~aL~nLa~--~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~ 293 (458)
T 3nmz_A 216 LRRYAGMALTNLTF--GDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME 293 (458)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHH
Confidence 99999999999985 2221 1 123588999999999999999999999999764222 2222 236777777
Q ss_pred h-hcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCH----
Q psy14015 137 L-ASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTP---- 211 (318)
Q Consensus 137 l-~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~---- 211 (318)
+ ..+.+..++..|+..+..+.... +..+..+ + .....+|.+.+++.+...
T Consensus 294 lLl~s~~~~v~~~A~~aL~nLs~~~-~~nk~~I-------~-----------------~~~Gal~~Lv~LL~~~~~~~~~ 348 (458)
T 3nmz_A 294 CALEVKKESTLKSVLSALWNLSAHC-TENKADI-------C-----------------AVDGALAFLVGTLTYRSQTNTL 348 (458)
T ss_dssp HHTTCCSHHHHHHHHHHHHHHHHHC-HHHHHHH-------H-----------------HSTTHHHHHHHHTTCCCSSSTT
T ss_pred HHhcCCCHHHHHHHHHHHHHHccCC-HHHHHHH-------H-----------------HhcCcHHHHHHHhcCCCCcchH
Confidence 5 55566778888777776553311 1122221 1 023468999999886553
Q ss_pred HHHHHHHHhhHHHHHHh--chh---h-hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhh----hHhhHHHHH
Q psy14015 212 MVRRAAAGKLGELAKVV--EVD---Y-LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV----EQLVMPTLR 281 (318)
Q Consensus 212 ~VR~~aa~~L~~l~~~~--~~~---~-~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~----~~~l~p~l~ 281 (318)
.+++.++.+|..++..+ +++ . .....+|.+..++++++..++..++.+|.+++.. +++.. ..-.+|.|.
T Consensus 349 ~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~I~~Lv 427 (458)
T 3nmz_A 349 AIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLK 427 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHH
Confidence 59999999999988631 222 1 1234789999999999999999999999999842 23221 234789999
Q ss_pred HhccccccccccCCCCCCchhhHHhh
Q psy14015 282 QCSVQIVDHKFCPNNEFHPLELHVIS 307 (318)
Q Consensus 282 ~ll~D~~~~~~~~~~~~~~Vr~~~i~ 307 (318)
.++.. .++.+|..+..
T Consensus 428 ~LL~s----------~~~~v~~~Aa~ 443 (458)
T 3nmz_A 428 NLIHS----------KHKMIAMGSAA 443 (458)
T ss_dssp TTTTC----------SSHHHHHHHHH
T ss_pred HHHhC----------CCHHHHHHHHH
Confidence 99998 77777766653
No 76
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.52 E-value=4.4e-06 Score=86.12 Aligned_cols=245 Identities=9% Similarity=0.036 Sum_probs=153.3
Q ss_pred CccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcC------ChHH-HHHHHHHHHcccccCcC-cc-cchh-----
Q psy14015 24 NEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIY------DEDE-VLLALAEQLGTFTPNVG-GP-EYVH----- 89 (318)
Q Consensus 24 ~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~------D~~~-VR~~aa~~L~~l~~~~~-~~-~~~~----- 89 (318)
++....|..+..-|..++...| +.....+++++.+.+. +++| .|.++...++.++.... .. ....
T Consensus 372 ~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~ 450 (960)
T 1wa5_C 372 SDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLL 450 (960)
T ss_dssp ----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTC
T ss_pred ccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccc
Confidence 3345689999999999998888 4466778888877665 5668 99999999998875321 11 0000
Q ss_pred ccchH----HhhhccCc---hhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCc
Q psy14015 90 CLLPP----LESLATVE---ETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA 162 (318)
Q Consensus 90 ~llp~----l~~l~~d~---~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~ 162 (318)
.+.+. +...+.|+ ++.||..|..+++.+++.++++ ....++|.+.+.+.|++..||..|+..|..++.....
T Consensus 451 ~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~ 529 (960)
T 1wa5_C 451 NVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRES 529 (960)
T ss_dssp CHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSC
T ss_pred cHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccc
Confidence 23232 22234566 8899999999999999988665 3455888888878888899999999988866542210
Q ss_pred chHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCC---HH--HHHHHHHhhHHHHHHhchhh-----
Q psy14015 163 GVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDT---PM--VRRAAAGKLGELAKVVEVDY----- 232 (318)
Q Consensus 163 ~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~---~~--VR~~aa~~L~~l~~~~~~~~----- 232 (318)
. .+..+..-.. .+ ...-..+++.+..+++... .. ....+..+++.++..++.+.
T Consensus 530 ~-------------~~~~~~~~~~--~l-~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~ 593 (960)
T 1wa5_C 530 N-------------TSPAFIFHKE--DI-SNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP 593 (960)
T ss_dssp S-------------SSCCBSSCGG--GT-TTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH
T ss_pred c-------------ccccccccHH--Hh-hhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH
Confidence 0 0000000000 00 0133567777777776531 11 34578888888888776431
Q ss_pred -hHhhHHHHHHHhhcCC-cHHHHHHHHHHHHHHHhhCChhh---hhHhhHHHHHHhccc
Q psy14015 233 -LKTDIIPMFVNLAQDE-QDSVRLLAVEACVSIASLLSQSD---VEQLVMPTLRQCSVQ 286 (318)
Q Consensus 233 -~~~~llp~l~~ll~D~-~~~VR~aa~~~l~~l~~~l~~~~---~~~~l~p~l~~ll~D 286 (318)
+...++..+....+++ ++..+..+.++++.++...+++. ..+.++|.+...+..
T Consensus 594 ~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~ 652 (960)
T 1wa5_C 594 QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSE 652 (960)
T ss_dssp HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHh
Confidence 2223334444444444 55778788999999998866653 345688888887765
No 77
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.52 E-value=2.4e-06 Score=88.00 Aligned_cols=240 Identities=8% Similarity=0.070 Sum_probs=142.0
Q ss_pred HHHHHHHHHhHHHHHHhhChHh--HhhchhhhhhhhcC-----ChHH-HHHHHHHHHcccccC------cCcccchhccc
Q psy14015 27 VQLRLNSIKKLSTIALALGQER--TRGELIPFLTETIY-----DEDE-VLLALAEQLGTFTPN------VGGPEYVHCLL 92 (318)
Q Consensus 27 ~~~R~~~~~~L~~ia~~lg~~~--~~~~llp~l~~l~~-----D~~~-VR~~aa~~L~~l~~~------~~~~~~~~~ll 92 (318)
+.+|..+++.|..+....+... ....+++++.+++. ..++ ++..+.+-+..+++. +..+.+...++
T Consensus 260 ~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li 339 (960)
T 1wa5_C 260 IKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNIT 339 (960)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHH
Confidence 3466777777777764433221 12334444444332 2233 777777777766542 11111222222
Q ss_pred -hHHhhhc-----------c------------CchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhc------CCC
Q psy14015 93 -PPLESLA-----------T------------VEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLAS------GDW 142 (318)
Q Consensus 93 -p~l~~l~-----------~------------d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~------d~~ 142 (318)
+++...+ . ++.+.+|.+|...+..++...+ +.+...+++.+.+.++ +++
T Consensus 340 ~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~ 418 (960)
T 1wa5_C 340 EQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKN 418 (960)
T ss_dssp HHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC----C
T ss_pred HHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHhccCcchh
Confidence 2221111 1 1123689999999999999887 5566667777776655 567
Q ss_pred chhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCC---CHHHHHHHHH
Q psy14015 143 FTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDD---TPMVRRAAAG 219 (318)
Q Consensus 143 ~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~---~~~VR~~aa~ 219 (318)
|+.|.+|..+++.+..+...... .. ....+. -.....+...+...++|+ .+.||..++.
T Consensus 419 w~~reaal~algaia~~~~~~~~--------~~-~~~~~~---------~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~ 480 (960)
T 1wa5_C 419 WKFKDLYIYLFTALAINGNITNA--------GV-SSTNNL---------LNVVDFFTKEIAPDLTSNNIPHIILRVDAIK 480 (960)
T ss_dssp HHHHHHHHHHHHHHHBSSCCBTT--------BC-CCBCTT---------CCHHHHHHHHTHHHHHCSSCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccC--------Cc-cccccc---------ccHHHHHHHHhHHHhcCCCCCCceehHHHHH
Confidence 99999999988877543211000 00 000000 011122223334445676 8999999999
Q ss_pred hhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCC----------hhhhh---HhhHHHHHHhccc
Q psy14015 220 KLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLS----------QSDVE---QLVMPTLRQCSVQ 286 (318)
Q Consensus 220 ~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~----------~~~~~---~~l~p~l~~ll~D 286 (318)
.+|.++..+.++ ....++|.+.+.+.|++..||..|+.++..+++... ++... ..+++.+..+++.
T Consensus 481 ~lg~~~~~~~~~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~ 559 (960)
T 1wa5_C 481 YIYTFRNQLTKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILK 559 (960)
T ss_dssp HHHHTGGGSCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhCCHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHh
Confidence 999999887544 467889988888999999999999999999987532 33232 3355566666665
No 78
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.50 E-value=1.4e-07 Score=85.89 Aligned_cols=236 Identities=12% Similarity=0.073 Sum_probs=114.8
Q ss_pred HHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhh
Q psy14015 20 DELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESL 98 (318)
Q Consensus 20 ~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l 98 (318)
+.++++|...|+..--.+-..+.. .++ .. -....+.+=++++++ +|..+.+.|+.+.. +...+.+.+.+.+.
T Consensus 75 kl~~s~d~~lKrLvYLyl~~~~~~-~~e-~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~----~~m~~~l~~~lk~~ 147 (355)
T 3tjz_B 75 KLFQSNDPTLRRMCYLTIKEMSCI-AED-VI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD----STMLQAIERYMKQA 147 (355)
T ss_dssp GGGGCCCHHHHHHHHHHHHHHTTT-SSC-GG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC----TTTHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHhCCC-HHH-HH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC----HHHHHHHHHHHHHH
Confidence 455566665555444444333322 111 11 112222222333445 77777777666643 44556666667777
Q ss_pred ccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccC
Q psy14015 99 ATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQD 178 (318)
Q Consensus 99 ~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~ 178 (318)
+.|.++.||.+|+-+...+.... ++.+ +.+++.+.+++.|.+..|-+.|..++..+...- +..
T Consensus 148 L~d~~pyVRk~A~l~~~kL~~~~-pe~v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d----~~a----------- 210 (355)
T 3tjz_B 148 IVDKVPSVSSSALVSSLHLLKCS-FDVV-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKND----RLA----------- 210 (355)
T ss_dssp HTCSSHHHHHHHHHHHHHHTTTC-HHHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC----HHH-----------
T ss_pred cCCCCHHHHHHHHHHHHHHhccC-HHHH-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc----hHH-----------
Confidence 77777777777776666665443 2222 335666666666666666666655555442210 111
Q ss_pred CCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHH
Q psy14015 179 DTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVE 258 (318)
Q Consensus 179 ~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~ 258 (318)
...+++.+.+- .-.++-.--..+..+..++..-. +.....+++.+...++..+..|--.|+.
T Consensus 211 ----------------~~kLv~~l~~~-~l~~~~~q~~llr~l~~~~~~d~-~~~~~~~~~~l~~~L~~~~~aVvyEa~k 272 (355)
T 3tjz_B 211 ----------------VSKMISKFTRH-GLKSPFAYCMMIRVASRQLEDED-GSRDSPLFDFIESCLRNKHEMVVYEAAS 272 (355)
T ss_dssp ----------------HHHHHHHHHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHH
T ss_pred ----------------HHHHHHHHhcC-CCcChHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 12233333221 11112111123444444443210 1223568888889999999999999999
Q ss_pred HHHHHHhhCChhhhhHhhHHHHHHhccccccccccCCCCCCchhhHHhhhh
Q psy14015 259 ACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCPNNEFHPLELHVISAT 309 (318)
Q Consensus 259 ~l~~l~~~l~~~~~~~~l~p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~ 309 (318)
+|..+.. .+.. ......+.+..++.. .++++|+.++.+.
T Consensus 273 ~I~~l~~-~~~~-~~~~a~~~L~~fLss----------~d~niryvaLr~L 311 (355)
T 3tjz_B 273 AIVNLPG-CSAK-ELAPAVSVLQLFCSS----------PKAALRYAAVRTL 311 (355)
T ss_dssp HHTC-------------CCCTHHHHHHS----------SSSSSHHHHHHCC
T ss_pred HHHhccC-CCHH-HHHHHHHHHHHHHcC----------CCchHHHHHHHHH
Confidence 9988876 3222 223456677788888 8899999887654
No 79
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.42 E-value=1e-05 Score=70.44 Aligned_cols=176 Identities=12% Similarity=0.028 Sum_probs=122.2
Q ss_pred HhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhh---HHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHH
Q psy14015 95 LESLATVEETVVRDKAVESLRLISAQHSPHDLEAH---FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSH 171 (318)
Q Consensus 95 l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~---ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~ 171 (318)
+...+-+.+..-|.+|++.|....+..+.+ +... +++.+.-.+.|.+..+=..+.+.+..++..
T Consensus 51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~~~-~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~------------ 117 (266)
T 2of3_A 51 LMSQLFHKDFKQHLAALDSLVRLADTSPRS-LLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVEL------------ 117 (266)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHCHHH-HHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhChHH-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH------------
Confidence 334444456788889999988877654332 2221 344433223466665555555554433222
Q ss_pred HHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHH
Q psy14015 172 FRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDS 251 (318)
Q Consensus 172 ~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~ 251 (318)
+....... .+.....++|.++..+-|....||..+-..+..+....++ ..+.+.+...+++-+|.
T Consensus 118 ---l~~~~y~~--------~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~----~~v~~~l~~g~ksKN~R 182 (266)
T 2of3_A 118 ---IRDTETPM--------SQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP----LKMTPMLLDALKSKNAR 182 (266)
T ss_dssp ---HHHTTCCC--------CHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHGGGCSCHH
T ss_pred ---HHhccccc--------hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHccCCHH
Confidence 22211110 0011256889999999999999999999999998887766 45777777888999999
Q ss_pred HHHHHHHHHHHHHhhCChhhhhHhhH---HHHHHhccccccccccCCCCCCchhhHHhhhhh
Q psy14015 252 VRLLAVEACVSIASLLSQSDVEQLVM---PTLRQCSVQIVDHKFCPNNEFHPLELHVISATT 310 (318)
Q Consensus 252 VR~aa~~~l~~l~~~l~~~~~~~~l~---p~l~~ll~D~~~~~~~~~~~~~~Vr~~~i~~~~ 310 (318)
+|..++..+..+.+..|... ...+ |.+..++.| .+++||-.++.+..
T Consensus 183 ~R~e~l~~l~~li~~~G~~~--~~~l~~~~~ia~ll~D----------~d~~VR~aAl~~lv 232 (266)
T 2of3_A 183 QRSECLLVIEYYITNAGISP--LKSLSVEKTVAPFVGD----------KDVNVRNAAINVLV 232 (266)
T ss_dssp HHHHHHHHHHHHHHHHCSGG--GGGGCHHHHHGGGGGC----------SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCc--cccccchHHHHHHHcC----------CCHHHHHHHHHHHH
Confidence 99999999999999888863 3467 999999999 99999999886654
No 80
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.40 E-value=7e-06 Score=81.34 Aligned_cols=210 Identities=12% Similarity=0.055 Sum_probs=135.7
Q ss_pred chhhhhhhhcCChHH-HHHHHHHHHcccccCcCc--ccchhccchHHhhhccCchh---HHHHHHHHHHHHHHhhCChhH
Q psy14015 52 ELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG--PEYVHCLLPPLESLATVEET---VVRDKAVESLRLISAQHSPHD 125 (318)
Q Consensus 52 ~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~--~~~~~~llp~l~~l~~d~~~---~VR~~a~~~l~~l~~~~~~~~ 125 (318)
.++|.|..++..+++ +|..+++.|..++..-.. .-..+..++.+.+++.+..+ .+|..|+.+|..+....+++.
T Consensus 457 GvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~ 536 (778)
T 3opb_A 457 ELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL 536 (778)
T ss_dssp THHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH
T ss_pred cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH
Confidence 478888888876666 999999999999753211 11234456666666655543 389999999999997666544
Q ss_pred Hhh-----hHHHHHHHhhcC-CCch-------------hhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCc---cc
Q psy14015 126 LEA-----HFVPLVQRLASG-DWFT-------------SRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTP---MQ 183 (318)
Q Consensus 126 ~~~-----~ilp~~~~l~~d-~~~~-------------vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~---~v 183 (318)
... ..+|.+.+|+.. +... .+..|+..|..+ ++..+. .+
T Consensus 537 ~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNL-------------------As~~~n~~E~~ 597 (778)
T 3opb_A 537 IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNL-------------------ASSETSDGEEV 597 (778)
T ss_dssp HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHH-------------------HHCCSHHHHHH
T ss_pred HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHH-------------------hcCCcccchHH
Confidence 321 366777777762 2211 133444444443 333211 11
Q ss_pred ccchhhcCccch-HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch--hhhH-------hhHHHHHHHhhcCCcHHHH
Q psy14015 184 QGHVWECGSGVK-AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV--DYLK-------TDIIPMFVNLAQDEQDSVR 253 (318)
Q Consensus 184 R~~v~~~~~~~~-~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~--~~~~-------~~llp~l~~ll~D~~~~VR 253 (318)
|++ ..+ ...+|.+..++.+++..||++|+..+..++..-.. ..+. ..-++.+..++...+..+|
T Consensus 598 r~~------Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r 671 (778)
T 3opb_A 598 CKH------IVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQ 671 (778)
T ss_dssp HHH------HHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHH
T ss_pred HHH------HHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHH
Confidence 111 122 25789999999999999999999999999963321 1111 1137889999999999999
Q ss_pred HHHHHHHHHHHhhCCh---hhhh-HhhHHHHHHhccc
Q psy14015 254 LLAVEACVSIASLLSQ---SDVE-QLVMPTLRQCSVQ 286 (318)
Q Consensus 254 ~aa~~~l~~l~~~l~~---~~~~-~~l~p~l~~ll~D 286 (318)
++|+.++..+....+. .-.. ...++.+..++.|
T Consensus 672 ~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~ 708 (778)
T 3opb_A 672 RAVAAIFANIATTIPLIAKELLTKKELIENAIQVFAD 708 (778)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhc
Confidence 9999999998643322 1112 2466777777777
No 81
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.40 E-value=6.1e-05 Score=61.30 Aligned_cols=211 Identities=17% Similarity=0.163 Sum_probs=135.6
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhc-CChH-HHHHHHHHHHcccccCcCcccchhccc
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETI-YDED-EVLLALAEQLGTFTPNVGGPEYVHCLL 92 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~-~D~~-~VR~~aa~~L~~l~~~~~~~~~~~~ll 92 (318)
+..++..|.|+=|.+|-++++-+..++..... ..+-++..+..++ .++. +.-.++++.+|.++.. .++....++
T Consensus 34 l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e--l~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i--~Pe~v~~vV 109 (253)
T 2db0_A 34 LKKLIELLDDDLWTVVKNAISIIMVIAKTRED--LYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE--KPELVKSMI 109 (253)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG--GHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH--CHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH--HHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHh--CHHHHHhhH
Confidence 34677888888899999999999998765332 2222333333333 3333 3668888999988752 345566677
Q ss_pred hHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHH
Q psy14015 93 PPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHF 172 (318)
Q Consensus 93 p~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~ 172 (318)
|++..-..--++.+|..-.++|..+....+. .... +..-+..|+.+++..-|..|..-++.+ +...-.
T Consensus 110 p~lfanyrigd~kikIn~~yaLeeIaranP~-l~~~-v~rdi~smltskd~~Dkl~aLnFi~al----Gen~~~------ 177 (253)
T 2db0_A 110 PVLFANYRIGDEKTKINVSYALEEIAKANPM-LMAS-IVRDFMSMLSSKNREDKLTALNFIEAM----GENSFK------ 177 (253)
T ss_dssp HHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH-HHHH-HHHHHHHHTSCSSHHHHHHHHHHHHTC----CTTTHH------
T ss_pred HHHHHHHhcCCccceecHHHHHHHHHHhChH-HHHH-HHHHHHHHhcCCChHHHHHHHHHHHHH----hccCcc------
Confidence 8664432323678888888888888865432 2122 333455677888766666554433322 221110
Q ss_pred HhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHH
Q psy14015 173 RNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSV 252 (318)
Q Consensus 173 ~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~V 252 (318)
+-.-.+|-+..++.|.+.-||..+..+|+.++..= +.+...+...+. =++|++..|
T Consensus 178 ---------------------yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~n--pklRkii~~kl~-e~~D~S~lv 233 (253)
T 2db0_A 178 ---------------------YVNPFLPRIINLLHDGDEIVRASAVEALVHLATLN--DKLRKVVIKRLE-ELNDTSSLV 233 (253)
T ss_dssp ---------------------HHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSC--HHHHHHHHHHHH-HCCCSCHHH
T ss_pred ---------------------ccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcC--HHHHHHHHHHHH-HhcCcHHHH
Confidence 11224788899999999999999999999999731 222222333333 358999999
Q ss_pred HHHHHHHHHHHHh
Q psy14015 253 RLLAVEACVSIAS 265 (318)
Q Consensus 253 R~aa~~~l~~l~~ 265 (318)
.....++++.+.-
T Consensus 234 ~~~V~egL~rl~l 246 (253)
T 2db0_A 234 NKTVKEGISRLLL 246 (253)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988874
No 82
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.39 E-value=3.3e-05 Score=74.89 Aligned_cols=249 Identities=15% Similarity=0.112 Sum_probs=155.3
Q ss_pred HHHHHHHhcC-ccHHHHHHHHHhHHHHHHhhC-hHhHhhchhhhhhhhc-----------------CC-hHH-HHHHHHH
Q psy14015 15 IAVLIDELKN-EDVQLRLNSIKKLSTIALALG-QERTRGELIPFLTETI-----------------YD-EDE-VLLALAE 73 (318)
Q Consensus 15 i~~l~~~l~~-~~~~~R~~~~~~L~~ia~~lg-~~~~~~~llp~l~~l~-----------------~D-~~~-VR~~aa~ 73 (318)
|+.+++.|++ .+..++..++..|..++..-. .......-+|.|.+++ .+ +++ |+..++.
T Consensus 135 Ip~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~ 214 (584)
T 3l6x_A 135 VPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAG 214 (584)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHH
Confidence 7788888886 577888898888888865211 1112234567776654 12 234 9999999
Q ss_pred HHcccccCcC--cccch--hccchHHhhhcc------CchhHHHHHHHHHHHHHHhhCChh-------------------
Q psy14015 74 QLGTFTPNVG--GPEYV--HCLLPPLESLAT------VEETVVRDKAVESLRLISAQHSPH------------------- 124 (318)
Q Consensus 74 ~L~~l~~~~~--~~~~~--~~llp~l~~l~~------d~~~~VR~~a~~~l~~l~~~~~~~------------------- 124 (318)
.|..++..-. ..... ..+++.|..++. +.+....+.|+.+|..++-....+
T Consensus 215 ~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~ 294 (584)
T 3l6x_A 215 CLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTG 294 (584)
T ss_dssp HHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-------------
T ss_pred HHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhccccccccc
Confidence 9999875210 00000 123344444433 345677788888888877542111
Q ss_pred -----H----HhhhHHHHHHHhhc-CCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccc
Q psy14015 125 -----D----LEAHFVPLVQRLAS-GDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGV 194 (318)
Q Consensus 125 -----~----~~~~ilp~~~~l~~-d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~ 194 (318)
. +....++.+..+++ .....++..|+..|..++..-... ...+ +.. ..
T Consensus 295 ~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~-~~~~----~~~-----------------v~ 352 (584)
T 3l6x_A 295 TSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTY-GRYI----RSA-----------------LR 352 (584)
T ss_dssp -CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHH-HHHH----HHH-----------------HT
T ss_pred ccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccc-cHHH----HHH-----------------HH
Confidence 0 11123455555553 345677777777776654321110 0000 000 12
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch-hhhHhhHHHHHHHhhcCC--------cHHHHHHHHHHHHHHHh
Q psy14015 195 KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV-DYLKTDIIPMFVNLAQDE--------QDSVRLLAVEACVSIAS 265 (318)
Q Consensus 195 ~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~-~~~~~~llp~l~~ll~D~--------~~~VR~aa~~~l~~l~~ 265 (318)
....+|.+.+++..++..|++.++.+|+.++..-.. +.+....+|-|..++.++ +..++..++.+++++..
T Consensus 353 ~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a 432 (584)
T 3l6x_A 353 QEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIA 432 (584)
T ss_dssp SHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHT
T ss_pred HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhc
Confidence 256799999999999999999999999999864332 234556899999999876 46788888888888763
Q ss_pred hCChhhh----hHhhHHHHHHhccc
Q psy14015 266 LLSQSDV----EQLVMPTLRQCSVQ 286 (318)
Q Consensus 266 ~l~~~~~----~~~l~p~l~~ll~D 286 (318)
. +++.. ..-.+|.|..++.+
T Consensus 433 ~-~~~~~~~I~~~g~I~~Lv~LL~s 456 (584)
T 3l6x_A 433 E-NLEAAKKLRETQGIEKLVLINKS 456 (584)
T ss_dssp T-CHHHHHHHHHTTHHHHHHHHHTC
T ss_pred C-CHHHHHHHHHCCChHHHHHHHhC
Confidence 2 22222 23489999999998
No 83
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.34 E-value=4e-05 Score=64.74 Aligned_cols=211 Identities=15% Similarity=0.170 Sum_probs=149.8
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHhhCh---HhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcC-cccchh
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQ---ERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVG-GPEYVH 89 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~---~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~-~~~~~~ 89 (318)
+..++..+.++|..++..+...|.++-+.... ....++++|-+.+++.++++ |-.-+.+.|+.+...+. +++...
T Consensus 35 l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~ 114 (265)
T 3b2a_A 35 LFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFL 114 (265)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 55677888999999999999999998766421 12467889999999988888 88888999998876433 233445
Q ss_pred ccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHH
Q psy14015 90 CLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELR 169 (318)
Q Consensus 90 ~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~ 169 (318)
.+...+..+.++.++-.+..|++.+..+ ..... ...+..++.++.++++.+++.++..+|-.+..+-++.
T Consensus 115 Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~~---~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~------ 184 (265)
T 3b2a_A 115 KAAKTLVSLLESPDDMMRIETIDVLSKL-QPLED---SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS------ 184 (265)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSCC---CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC------
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHhCcC-Ccccc---hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH------
Confidence 5778888888988999999999999888 33221 2236667777888888888888877776665443321
Q ss_pred HHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhh---HhhHHHHHHHhh-
Q psy14015 170 SHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYL---KTDIIPMFVNLA- 245 (318)
Q Consensus 170 ~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~---~~~llp~l~~ll- 245 (318)
...+.++.-+..+++.+++.++.-|...+-.+...-=.+.+ ...+...+.++.
T Consensus 185 -----------------------~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~ 241 (265)
T 3b2a_A 185 -----------------------GHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVY 241 (265)
T ss_dssp -----------------------CCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGG
T ss_pred -----------------------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHH
Confidence 13344555667788889999999999888887753211211 234555666776
Q ss_pred cCCcHHHHHHHHH
Q psy14015 246 QDEQDSVRLLAVE 258 (318)
Q Consensus 246 ~D~~~~VR~aa~~ 258 (318)
.-..+.+|..|-.
T Consensus 242 ~~~~~~~~~ka~~ 254 (265)
T 3b2a_A 242 REGAPIIRLKAKK 254 (265)
T ss_dssp CSSCHHHHHHHHH
T ss_pred hcCChhHHHHHHH
Confidence 6667777776543
No 84
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.31 E-value=3.4e-05 Score=76.46 Aligned_cols=252 Identities=12% Similarity=0.113 Sum_probs=164.2
Q ss_pred hHHHHHHHhcCccHHHHHHHHHhHHHHHHhhC--hHhHhhchhhhhhhhcCCh-HH---HHHHHHHHHcccccC------
Q psy14015 14 PIAVLIDELKNEDVQLRLNSIKKLSTIALALG--QERTRGELIPFLTETIYDE-DE---VLLALAEQLGTFTPN------ 81 (318)
Q Consensus 14 ~i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg--~~~~~~~llp~l~~l~~D~-~~---VR~~aa~~L~~l~~~------ 81 (318)
-|+.+...++++++.+|..+++.|..++..-. ..-..+-.+|.|..++... .. +|..|+.+|.++...
T Consensus 458 vIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~ 537 (778)
T 3opb_A 458 LISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLI 537 (778)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHH
Confidence 36677888899999999999999999974311 1112334466666666543 22 799999999988632
Q ss_pred cCcccchhccchHHhhhcc-Cchh-------------HHHHHHHHHHHHHHhhCCh------hHHhh--hHHHHHHHhhc
Q psy14015 82 VGGPEYVHCLLPPLESLAT-VEET-------------VVRDKAVESLRLISAQHSP------HDLEA--HFVPLVQRLAS 139 (318)
Q Consensus 82 ~~~~~~~~~llp~l~~l~~-d~~~-------------~VR~~a~~~l~~l~~~~~~------~~~~~--~ilp~~~~l~~ 139 (318)
+++... ...+|-|..|+. +++. .-+..|+.+|..++..-+. ..+.. ..+|.+.+++.
T Consensus 538 f~~~~~-~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~ 616 (778)
T 3opb_A 538 FKKYSA-LNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLML 616 (778)
T ss_dssp SSSSCS-TTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGG
T ss_pred cCCCcc-ccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHh
Confidence 222111 245566777766 2221 2266788899999987532 22333 47899999999
Q ss_pred CCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHH
Q psy14015 140 GDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAG 219 (318)
Q Consensus 140 d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~ 219 (318)
+++..+|.+|++++..+...... .... +.....| ....=++.+..+++.++.++|++|+.
T Consensus 617 s~n~~VrrAA~elI~NL~~~~e~-i~~k-------~~~~~~~------------~~~~rL~lLV~Ll~s~D~~~r~AAag 676 (778)
T 3opb_A 617 DENVPLQRSTLELISNMMSHPLT-IAAK-------FFNLENP------------QSLRNFNILVKLLQLSDVESQRAVAA 676 (778)
T ss_dssp CSSHHHHHHHHHHHHHHHTSGGG-TGGG-------TSCCSSH------------HHHHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCcHH-HHHH-------HHhhcCc------------hhhccHHHHHHHHcCCCHHHHHHHHH
Confidence 98999999999999877542110 0000 0000000 01123789999999999999999999
Q ss_pred hhHHHHHHhch--hh-hH-hhHHHHHHHhhcC--CcHHHHHHHHHHHHHHHhhC----Chhh-----hhHhhHHHHHHhc
Q psy14015 220 KLGELAKVVEV--DY-LK-TDIIPMFVNLAQD--EQDSVRLLAVEACVSIASLL----SQSD-----VEQLVMPTLRQCS 284 (318)
Q Consensus 220 ~L~~l~~~~~~--~~-~~-~~llp~l~~ll~D--~~~~VR~aa~~~l~~l~~~l----~~~~-----~~~~l~p~l~~ll 284 (318)
+|+.+....+. +. +. ...++.+..++++ ++..+|..++..+.+++... +.+. ..+.+...+...+
T Consensus 677 ALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 756 (778)
T 3opb_A 677 IFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSL 756 (778)
T ss_dssp HHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHH
T ss_pred HHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHH
Confidence 99998643221 11 12 2477778888888 88999999999999999743 2111 1244677788888
Q ss_pred cc
Q psy14015 285 VQ 286 (318)
Q Consensus 285 ~D 286 (318)
+.
T Consensus 757 k~ 758 (778)
T 3opb_A 757 KR 758 (778)
T ss_dssp SS
T ss_pred hC
Confidence 77
No 85
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.25 E-value=3.8e-05 Score=64.88 Aligned_cols=179 Identities=13% Similarity=0.028 Sum_probs=112.5
Q ss_pred hhhhhhhhcCChHH-HHHHHHHHHcccccCcCc---ccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCCh-hHHh
Q psy14015 53 LIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG---PEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP-HDLE 127 (318)
Q Consensus 53 llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~---~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~-~~~~ 127 (318)
-+..+..++.|.++ |+..+...|+++.+...+ ....+.++|-+..++.++++.|-..|+.++..+.+..+. +...
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y 113 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF 113 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence 45666677776665 777777777777664432 123355667777777777777777777777777766654 3444
Q ss_pred hhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhc
Q psy14015 128 AHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ 207 (318)
Q Consensus 128 ~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~ 207 (318)
..+...+..+.++++.-.+..|++.+|++ ... .....++..+.+++.
T Consensus 114 ~Kl~~aL~dlik~~~~il~~eaae~Lgkl--kv~-------------------------------~~~~~V~~~l~sLl~ 160 (265)
T 3b2a_A 114 LKAAKTLVSLLESPDDMMRIETIDVLSKL--QPL-------------------------------EDSKLVRTYINELVV 160 (265)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHC--CBS-------------------------------CCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHhCcC--Ccc-------------------------------cchHHHHHHHHHHHh
Confidence 55666666666666666666666666654 111 112456666677777
Q ss_pred CCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy14015 208 DDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIA 264 (318)
Q Consensus 208 D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~ 264 (318)
..+.+|..++...|-+++..-+.......++.=+..+++.+++.++..+..++-.+.
T Consensus 161 Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~il 217 (265)
T 3b2a_A 161 SPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKAL 217 (265)
T ss_dssp CSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred CCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 777777777777777777655554555666666667777777777776655554444
No 86
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.25 E-value=2e-05 Score=81.09 Aligned_cols=151 Identities=7% Similarity=0.006 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcC-----CCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCC
Q psy14015 105 VVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASG-----DWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDD 179 (318)
Q Consensus 105 ~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d-----~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~ 179 (318)
.-|..+.+.+..++..++ +.+...+++.+.+.++. .+|..|.+++..++.+..++......
T Consensus 436 ~~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~------------- 501 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKR------------- 501 (971)
T ss_dssp HHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------C-------------
T ss_pred HHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhH-------------
Confidence 568888889988888777 45555667776655433 68999999999998876655432111
Q ss_pred CcccccchhhcCccchHHHHHHHHHhh-cCCCHHHHHHHHHhhHHHHHHhchh-hhHhhHHHHHHHhhcCCcHHHHHHHH
Q psy14015 180 TPMQQGHVWECGSGVKAELRSHFRNLC-QDDTPMVRRAAAGKLGELAKVVEVD-YLKTDIIPMFVNLAQDEQDSVRLLAV 257 (318)
Q Consensus 180 ~~~vR~~v~~~~~~~~~~ll~~l~~l~-~D~~~~VR~~aa~~L~~l~~~~~~~-~~~~~llp~l~~ll~D~~~~VR~aa~ 257 (318)
.-..+++.+..+. +|+++.||..++..+|.++..++.+ .....++|.+...+ | +.|+..|+
T Consensus 502 --------------~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~ 564 (971)
T 2x1g_F 502 --------------QIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQAT 564 (971)
T ss_dssp --------------HHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHH
T ss_pred --------------HHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHH
Confidence 1244566555555 3679999999999999999988743 34567888777777 4 67999999
Q ss_pred HHHHHHHhhCChh--hhhHhhHHHHHHhccc
Q psy14015 258 EACVSIASLLSQS--DVEQLVMPTLRQCSVQ 286 (318)
Q Consensus 258 ~~l~~l~~~l~~~--~~~~~l~p~l~~ll~D 286 (318)
.++..+++.+++. ...+.++..+..++..
T Consensus 565 ~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~ 595 (971)
T 2x1g_F 565 LGLKELCRDCQLQLKPYADPLLNACHASLNT 595 (971)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHcC
Confidence 9999999877543 1223355555555554
No 87
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.24 E-value=1.1e-05 Score=83.06 Aligned_cols=174 Identities=7% Similarity=0.019 Sum_probs=121.0
Q ss_pred HHHHHHHHHcccccCcCcccchhccchHHhhhccC-----chhHHHHHHHHHHHHHHhhCChhH--HhhhHHHHHHHhh-
Q psy14015 67 VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATV-----EETVVRDKAVESLRLISAQHSPHD--LEAHFVPLVQRLA- 138 (318)
Q Consensus 67 VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d-----~~~~VR~~a~~~l~~l~~~~~~~~--~~~~ilp~~~~l~- 138 (318)
.|++++..|..++..+| ....+.+++.+.+.+.. +++..|++|+.++..+++.+..+. ....+++.+..+.
T Consensus 437 ~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~ 515 (971)
T 2x1g_F 437 YRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPY 515 (971)
T ss_dssp HHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCc
Confidence 78889999988888776 45666777777766544 578899999999999998876532 2233566555555
Q ss_pred cCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHH
Q psy14015 139 SGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAA 218 (318)
Q Consensus 139 ~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa 218 (318)
+|+...+|..++..++.+...+... + ..-..+++.+...+ | +.|+..|+
T Consensus 516 ~d~~~~vr~~a~~~l~~~~~~l~~~-----------------~-----------~~l~~vl~~l~~~l-~--~~v~~~A~ 564 (971)
T 2x1g_F 516 EKLNVKLLGTALETMGSYCNWLMEN-----------------P-----------AYIPPAINLLVRGL-N--SSMSAQAT 564 (971)
T ss_dssp TTSCHHHHHHHHHHHHHTHHHHC--------------------------------CHHHHHHHHHHHH-H--SSCHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHhcC-----------------H-----------HHHHHHHHHHHHHh-C--hHHHHHHH
Confidence 3567889999999888654332211 0 13356677777777 4 78999999
Q ss_pred HhhHHHHHHhchh--hhHhhHHHHHHHhhcC--CcHHHHHHHHHHHHHHHhhCChhhh
Q psy14015 219 GKLGELAKVVEVD--YLKTDIIPMFVNLAQD--EQDSVRLLAVEACVSIASLLSQSDV 272 (318)
Q Consensus 219 ~~L~~l~~~~~~~--~~~~~llp~l~~ll~D--~~~~VR~aa~~~l~~l~~~l~~~~~ 272 (318)
.+|..+++.++.+ ...+.++..+..++.. ....+|..+.++++.++..++.+..
T Consensus 565 ~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~ 622 (971)
T 2x1g_F 565 LGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEI 622 (971)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHH
Confidence 9999999876543 1234566666666666 3578999999999999988774443
No 88
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.19 E-value=5.8e-06 Score=78.08 Aligned_cols=189 Identities=18% Similarity=0.125 Sum_probs=126.6
Q ss_pred HHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhH
Q psy14015 27 VQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETV 105 (318)
Q Consensus 27 ~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~ 105 (318)
+.||-.+++.|+.+ ..+.++ ..++-.+...+....| ||.+..-.|+-+.+.+.. ...++|.+...+.|.+++
T Consensus 242 APVRETaAQtLGaL-~hLp~e---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~aVL~GL~D~DDD 314 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-YPLIGP---NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCRKLVSLLSSPDED 314 (800)
T ss_dssp CHHHHHHHHHHHHH-TTTSCS---CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHHHHHHHTTCSSHH
T ss_pred eehHHHHHHHHHHH-HhCChh---HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHHHHHhhcCCcccH
Confidence 46899999999998 777765 2233333334466778 999999888877544432 566788888888999999
Q ss_pred HHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCccccc
Q psy14015 106 VRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQG 185 (318)
Q Consensus 106 VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~ 185 (318)
||..|+++|..++..-.-..+...++..+.++ |+--..-.+...+|++++ +.....
T Consensus 315 VRAVAAetLiPIA~p~~l~~LL~iLWd~L~~L--DDLSASTgSVMdLLAkL~-------------------s~p~~a--- 370 (800)
T 3oc3_A 315 IKLLSAELLCHFPITDSLDLVLEKCWKNIESE--ELISVSKTSNLSLLTKIY-------------------RENPEL--- 370 (800)
T ss_dssp HHHHHHHHHTTSCCSSTHHHHHHHHHHHHHTC--CSCCTTHHHHHHHHHHHH-------------------HHCTTC---
T ss_pred HHHHHHHHhhhhcchhhHHHHHHHHHHHhhhh--cccchhhHHHHHHHHHHH-------------------cCCccc---
Confidence 99999999999982111133334444444444 332222223333343332 221100
Q ss_pred chhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHH-HHHHhhcCCcHHHHHHHHHHHH
Q psy14015 186 HVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIP-MFVNLAQDEQDSVRLLAVEACV 261 (318)
Q Consensus 186 ~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp-~l~~ll~D~~~~VR~aa~~~l~ 261 (318)
.....++|.+..++.+.-..||+++..++..+.. ..++. +|.+++-+++..||..+.+...
T Consensus 371 -------~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL~--------~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 371 -------SIPPERLKDIFPCFTSPVPEVRTSILNMVKNLSE--------ESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp -------CCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCCC--------HHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred -------ccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHHh--------hhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 1123788999999999999999999999988761 23344 7889999999999998887664
No 89
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.18 E-value=9.1e-05 Score=77.02 Aligned_cols=155 Identities=10% Similarity=0.137 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcC--CCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcc
Q psy14015 105 VVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASG--DWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPM 182 (318)
Q Consensus 105 ~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d--~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 182 (318)
..|..+.+.|..++.. .+..+...+.+.+.+..++ .+|+.|.+++..+|.+...........
T Consensus 428 ~~~~~~~~~L~~l~~~-~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~--------------- 491 (1049)
T 3m1i_C 428 QLYKSEREVLVYLTHL-NVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKR--------------- 491 (1049)
T ss_dssp HHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHH---------------
Confidence 4466777777777744 4556677788888877754 579999999999997765544321111
Q ss_pred cccchhhcCccchHHHHHHHHHhhc-----CCCHHHHHHHHHhhHHHHHHhchh-hhHhhHHHHHHHhhcCCcHHHHHHH
Q psy14015 183 QQGHVWECGSGVKAELRSHFRNLCQ-----DDTPMVRRAAAGKLGELAKVVEVD-YLKTDIIPMFVNLAQDEQDSVRLLA 256 (318)
Q Consensus 183 vR~~v~~~~~~~~~~ll~~l~~l~~-----D~~~~VR~~aa~~L~~l~~~~~~~-~~~~~llp~l~~ll~D~~~~VR~aa 256 (318)
....+++.+..++. |+.+.||..++..+|.++..+..+ .....+++.+...+.|+++.||..|
T Consensus 492 -----------~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A 560 (1049)
T 3m1i_C 492 -----------FVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMA 560 (1049)
T ss_dssp -----------HHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 12445666666543 566788878999999999876543 3456678877788899999999999
Q ss_pred HHHHHHHHhhCChhh----------hhHhhHHHHHHhccc
Q psy14015 257 VEACVSIASLLSQSD----------VEQLVMPTLRQCSVQ 286 (318)
Q Consensus 257 ~~~l~~l~~~l~~~~----------~~~~l~p~l~~ll~D 286 (318)
+.++..+++.+++.- ..+.++..+..++.+
T Consensus 561 ~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~ 600 (1049)
T 3m1i_C 561 CDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTAD 600 (1049)
T ss_dssp HHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHh
Confidence 999999998766542 133455555555554
No 90
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.12 E-value=0.0001 Score=75.62 Aligned_cols=208 Identities=14% Similarity=0.093 Sum_probs=134.6
Q ss_pred HHHHHHhHHHHHHhhChHhHhhchhhhhhhhc----CChHH-HHHHHHHHHcccccCcCcc--cchhccchHHhhhccCc
Q psy14015 30 RLNSIKKLSTIALALGQERTRGELIPFLTETI----YDEDE-VLLALAEQLGTFTPNVGGP--EYVHCLLPPLESLATVE 102 (318)
Q Consensus 30 R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~----~D~~~-VR~~aa~~L~~l~~~~~~~--~~~~~llp~l~~l~~d~ 102 (318)
|..+...|..++...|.+ +...+++++.+.+ .+.+| .|.++...++.+++.+... .....+++.+.++.. +
T Consensus 424 r~~~~~~L~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~-~ 501 (963)
T 2x19_B 424 RVDISDTLMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISI-S 501 (963)
T ss_dssp HHHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCC-C
T ss_pred HHHHHHHHHHHHHHccHH-HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCC-C
Confidence 667777777777777754 5566777776666 55678 8999999999998765432 233445665555544 4
Q ss_pred hhHHHHHHHHHHHHHHhhCCh-hHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCc
Q psy14015 103 ETVVRDKAVESLRLISAQHSP-HDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTP 181 (318)
Q Consensus 103 ~~~VR~~a~~~l~~l~~~~~~-~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 181 (318)
++.||..+...++.+++.+.. ......+++.+.+.+++ ..+|..|+..|..++...... ..|
T Consensus 502 ~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~---------------l~p 564 (963)
T 2x19_B 502 NVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYD---------------LPP 564 (963)
T ss_dssp SHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGG---------------CTT
T ss_pred cHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHH---------------HHh
Confidence 678999999999999887643 23445577777766665 678888888887665432211 111
Q ss_pred ccccchhhcCccchHHHHHHHHHhhcC--CCHHHHHHHHHhhHHHHHHhchh---hhHhhHHHHH----HHhhcCC-cHH
Q psy14015 182 MQQGHVWECGSGVKAELRSHFRNLCQD--DTPMVRRAAAGKLGELAKVVEVD---YLKTDIIPMF----VNLAQDE-QDS 251 (318)
Q Consensus 182 ~vR~~v~~~~~~~~~~ll~~l~~l~~D--~~~~VR~~aa~~L~~l~~~~~~~---~~~~~llp~l----~~ll~D~-~~~ 251 (318)
..+.++..+.++++. -....|..+..+++.++...+.+ ...+.+++.+ ....+.+ +..
T Consensus 565 ------------~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~ 632 (963)
T 2x19_B 565 ------------YAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPS 632 (963)
T ss_dssp ------------THHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHH
T ss_pred ------------hHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 235667777776663 46789999999999998766522 1223344333 3333222 444
Q ss_pred HHH---HHHHHHHHHHhhCC
Q psy14015 252 VRL---LAVEACVSIASLLS 268 (318)
Q Consensus 252 VR~---aa~~~l~~l~~~l~ 268 (318)
.|. .+.+.++.++..++
T Consensus 633 ~~~~~~~~l~~l~~i~~~~~ 652 (963)
T 2x19_B 633 NKLAIVHILGLLSNLFTTLD 652 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 444 45566777777775
No 91
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.09 E-value=0.00015 Score=59.07 Aligned_cols=205 Identities=14% Similarity=0.120 Sum_probs=128.2
Q ss_pred hchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhh----ccCchhHHHHHHHHHHHHHHhhCChhH
Q psy14015 51 GELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESL----ATVEETVVRDKAVESLRLISAQHSPHD 125 (318)
Q Consensus 51 ~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l----~~d~~~~VR~~a~~~l~~l~~~~~~~~ 125 (318)
++++..+..+++|+-| |++.+...+..+++. ..+.+-|.+..| -+++.-..-..-..+++.++.. .++.
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~-----~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i-~Pe~ 104 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKT-----REDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE-KPEL 104 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-----CGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH-CHHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHH-----hHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHh-CHHH
Confidence 4567777789999999 999999999988752 222233443333 2344322323444566666654 3333
Q ss_pred HhhhHHHHHHH-hhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHH
Q psy14015 126 LEAHFVPLVQR-LASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRN 204 (318)
Q Consensus 126 ~~~~ilp~~~~-l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~ 204 (318)
...++|.+.. +.-+ ....|.+..+.|+.+...-+. .-..+..-+..
T Consensus 105 -v~~vVp~lfanyrig-d~kikIn~~yaLeeIaranP~-------------------------------l~~~v~rdi~s 151 (253)
T 2db0_A 105 -VKSMIPVLFANYRIG-DEKTKINVSYALEEIAKANPM-------------------------------LMASIVRDFMS 151 (253)
T ss_dssp -HHHHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCHH-------------------------------HHHHHHHHHHH
T ss_pred -HHhhHHHHHHHHhcC-CccceecHHHHHHHHHHhChH-------------------------------HHHHHHHHHHH
Confidence 3336777643 3222 456777777776655321110 12334455677
Q ss_pred hhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhc
Q psy14015 205 LCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS 284 (318)
Q Consensus 205 l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll 284 (318)
+++|++..-|.++..-++.++.+ +. ....-.+|-+..|+.|.+..||.+++++++.++..-++ ...++-..++-+
T Consensus 152 mltskd~~Dkl~aLnFi~alGen-~~-~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk---lRkii~~kl~e~ 226 (253)
T 2db0_A 152 MLSSKNREDKLTALNFIEAMGEN-SF-KYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK---LRKVVIKRLEEL 226 (253)
T ss_dssp HTSCSSHHHHHHHHHHHHTCCTT-TH-HHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH---HHHHHHHHHHHC
T ss_pred HhcCCChHHHHHHHHHHHHHhcc-Cc-cccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH---HHHHHHHHHHHh
Confidence 88899988888777666655532 11 12355789999999999999999999999999965332 334445556667
Q ss_pred cccccccccCCCCCCchhhHHhhhh
Q psy14015 285 VQIVDHKFCPNNEFHPLELHVISAT 309 (318)
Q Consensus 285 ~D~~~~~~~~~~~~~~Vr~~~i~~~ 309 (318)
+| ....|...|....
T Consensus 227 ~D----------~S~lv~~~V~egL 241 (253)
T 2db0_A 227 ND----------TSSLVNKTVKEGI 241 (253)
T ss_dssp CC----------SCHHHHHHHHHHH
T ss_pred cC----------cHHHHHHHHHHHH
Confidence 88 6666666665543
No 92
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.09 E-value=0.00036 Score=71.59 Aligned_cols=220 Identities=11% Similarity=0.106 Sum_probs=135.9
Q ss_pred cCccHHHHHHHHHhHHHHHHhhChH--hHhhchhhhhhhhcCChHHHHHHHHHHHcccccCcCc-ccchhccchHHhhhc
Q psy14015 23 KNEDVQLRLNSIKKLSTIALALGQE--RTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGG-PEYVHCLLPPLESLA 99 (318)
Q Consensus 23 ~~~~~~~R~~~~~~L~~ia~~lg~~--~~~~~llp~l~~l~~D~~~VR~~aa~~L~~l~~~~~~-~~~~~~llp~l~~l~ 99 (318)
++.+|..|..++..++.++..+..+ .....+++.+..+.++...||..++..++.+++.++. +.....+++.+...+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l 538 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHAL 538 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHh
Confidence 5778999999999999988665432 2345677777666664334999999999999887653 345566777666666
Q ss_pred cCchhHHHHHHHHHHHHHHhhCChhH--HhhhHHHHHHHhhcC--CCchhhhhhhhhhhhhccccCcchHHHHHHHHHhh
Q psy14015 100 TVEETVVRDKAVESLRLISAQHSPHD--LEAHFVPLVQRLASG--DWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNL 175 (318)
Q Consensus 100 ~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~ilp~~~~l~~d--~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l 175 (318)
.+ +.||..|..++..+++..+..- +.+.++..+.++++. -....|..+.+.++.++...+..... ..+
T Consensus 539 ~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~---~~~--- 610 (963)
T 2x19_B 539 GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL---KNL--- 610 (963)
T ss_dssp TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH---HHH---
T ss_pred CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH---HHH---
Confidence 55 7899999999999998764421 122344444444443 23467777777777666544311111 111
Q ss_pred ccCCCcccccchhhcCccchHHHHHHH----HHhhcC-CCHHHHH---HHHHhhHHHHHHhchh----------------
Q psy14015 176 CQDDTPMQQGHVWECGSGVKAELRSHF----RNLCQD-DTPMVRR---AAAGKLGELAKVVEVD---------------- 231 (318)
Q Consensus 176 ~~~~~~~vR~~v~~~~~~~~~~ll~~l----~~l~~D-~~~~VR~---~aa~~L~~l~~~~~~~---------------- 231 (318)
..+++.+ ....+. .+++.|. .+..+++.++..++..
T Consensus 611 --------------------~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 670 (963)
T 2x19_B 611 --------------------HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPV 670 (963)
T ss_dssp --------------------HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC-------------
T ss_pred --------------------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCC
Confidence 2223332 222322 3555555 4555566666665420
Q ss_pred --------hhHhhHHHHHHHhhcC--CcHHHHHHHHHHHHHHHhhCChh
Q psy14015 232 --------YLKTDIIPMFVNLAQD--EQDSVRLLAVEACVSIASLLSQS 270 (318)
Q Consensus 232 --------~~~~~llp~l~~ll~D--~~~~VR~aa~~~l~~l~~~l~~~ 270 (318)
.+.+.++|.+..+++. .+..++..++..+..+...+|+.
T Consensus 671 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~ 719 (963)
T 2x19_B 671 PQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDD 719 (963)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSST
T ss_pred CCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhccc
Confidence 1345677766665531 23478888888888888777754
No 93
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.03 E-value=0.00019 Score=74.54 Aligned_cols=174 Identities=11% Similarity=-0.026 Sum_probs=119.1
Q ss_pred HHHHHHHHHcccccCcCcccchhccchHHhhhcc--CchhHHHHHHHHHHHHHHhhCChhH---HhhhHHHHHHHhhc--
Q psy14015 67 VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLAT--VEETVVRDKAVESLRLISAQHSPHD---LEAHFVPLVQRLAS-- 139 (318)
Q Consensus 67 VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~--d~~~~VR~~a~~~l~~l~~~~~~~~---~~~~ilp~~~~l~~-- 139 (318)
.|+++...|..++... +....+.+++.+.+.+. ..++..|++|+.+++.+++.+.... ....+++.+..+..
T Consensus 429 ~~~~~~~~L~~l~~~~-~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~ 507 (1049)
T 3m1i_C 429 LYKSEREVLVYLTHLN-VIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKK 507 (1049)
T ss_dssp HHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhh
Confidence 6778888888777533 44556667777777765 3578889999999999988776542 23345555555432
Q ss_pred ---CCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHH
Q psy14015 140 ---GDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRA 216 (318)
Q Consensus 140 ---d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~ 216 (318)
|+.+.+|..++.++|.+...+... | ..-..+++.++..+.|+++.||..
T Consensus 508 ~~~~~~~~v~~~~~~~lgry~~~~~~~-----------------~-----------~~l~~vl~~ll~~l~~~~~~V~~~ 559 (1049)
T 3m1i_C 508 RGKDNKAVVASDIMYVVGQYPRFLKAH-----------------W-----------NFLRTVILKLFEFMHETHEGVQDM 559 (1049)
T ss_dssp CSHHHHHHHHHHHHHHHHHCHHHHHHC-----------------H-----------HHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHhH-----------------H-----------HHHHHHHHHHHHHhcCCCHHHHHH
Confidence 234555656777766442211100 0 123556777788889999999999
Q ss_pred HHHhhHHHHHHhchhh----------hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCCh
Q psy14015 217 AAGKLGELAKVVEVDY----------LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ 269 (318)
Q Consensus 217 aa~~L~~l~~~~~~~~----------~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~ 269 (318)
|+.+|..++..++... ..+.++..+..++.+....-+..+.++++.+....+.
T Consensus 560 A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~ 622 (1049)
T 3m1i_C 560 ACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERS 622 (1049)
T ss_dssp HHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999776432 2456666666777777776778889999999988873
No 94
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.01 E-value=0.00016 Score=73.87 Aligned_cols=218 Identities=14% Similarity=0.170 Sum_probs=159.8
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCCh-HH-HHHHHHHHHcccccCcCc--ccchhc
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDE-DE-VLLALAEQLGTFTPNVGG--PEYVHC 90 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~-~~-VR~~aa~~L~~l~~~~~~--~~~~~~ 90 (318)
++.+++...|....+|..+......+...+.++.. ..++|.+...++.. .| .+.++...+..+++.... ......
T Consensus 97 ~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~ 175 (986)
T 2iw3_A 97 VPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPE 175 (986)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccc
Confidence 67888999999999999999999999999999865 88899998777554 68 999999999998864321 123466
Q ss_pred cchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhh--hccccCcchHHHH
Q psy14015 91 LLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSV--CYPRVTAGVKAEL 168 (318)
Q Consensus 91 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~--~~~~~~~~~~~~l 168 (318)
++|++....-|.-++|..+|.+++..++..++..++.. ++|.+.+-..+|+. +-.+ +..|+. +...+. .
T Consensus 176 ~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~-~~~~~~~~~~~p~~-~~~~-~~~l~~~tfv~~v~---~--- 246 (986)
T 2iw3_A 176 LIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIER-FIPSLIQCIADPTE-VPET-VHLLGATTFVAEVT---P--- 246 (986)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGG-GHHHHHHHHHCTTH-HHHH-HHHHTTCCCCSCCC---H---
T ss_pred hhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhh-hHHHHHHHhcChhh-hHHH-HHHhhcCeeEeeec---c---
Confidence 89999999999999999999999999999988877766 67777666666632 2211 222220 111111 1
Q ss_pred HHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh----hhHhhHHHHHHHh
Q psy14015 169 RSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD----YLKTDIIPMFVNL 244 (318)
Q Consensus 169 ~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~----~~~~~llp~l~~l 244 (318)
.+-.-+.|.+..-+++....+++.++--...++.-.... .+...++|-+++.
T Consensus 247 ------------------------~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~ 302 (986)
T 2iw3_A 247 ------------------------ATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSN 302 (986)
T ss_dssp ------------------------HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHH
T ss_pred ------------------------hhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHH
Confidence 122457899999999998888887877777777655433 3456788877775
Q ss_pred h-cCCcHHHHHHHHHHHHHHHhh
Q psy14015 245 A-QDEQDSVRLLAVEACVSIASL 266 (318)
Q Consensus 245 l-~D~~~~VR~aa~~~l~~l~~~ 266 (318)
. .=..+++|..+-.++..+-..
T Consensus 303 ~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 303 FATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp TTTCCSHHHHHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHHHHHh
Confidence 4 345778999998888887654
No 95
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.90 E-value=7.1e-05 Score=69.64 Aligned_cols=258 Identities=13% Similarity=0.123 Sum_probs=136.1
Q ss_pred HHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHH
Q psy14015 17 VLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPL 95 (318)
Q Consensus 17 ~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l 95 (318)
..++.-+. +.+..+-+++.++.--+.+.. ..++-+..+..|++|++. ||+.+.+.|+.+|+. +....+..+|
T Consensus 33 ~Il~~~kg-~~k~K~LaaQ~I~kffk~FP~--l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL 105 (507)
T 3u0r_A 33 VILDGVKG-GTKEKRLAAQFIPKFFKHFPE--LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADIL 105 (507)
T ss_dssp HHHHGGGS-CHHHHHHHHHHHHHHGGGCGG--GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHH
T ss_pred HHHHhcCC-CHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHH
Confidence 44455544 366666666776665544432 344556666677877776 888888888888763 4566677777
Q ss_pred hhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhcccc-----CcchHHHHHH
Q psy14015 96 ESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRV-----TAGVKAELRS 170 (318)
Q Consensus 96 ~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~-----~~~~~~~l~~ 170 (318)
.+|+..++..-+...-.+|..+...-+... +-.++.++.+++ ..+|.-+..-+..-+..+ +.+....+..
T Consensus 106 ~QlLqtdd~~E~~~V~~sL~sllk~Dpk~t----l~~lf~~i~~~~-e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~ 180 (507)
T 3u0r_A 106 TQLLQTDDSAEFNLVNNALLSIFKMDAKGT----LGGLFSQILQGE-DIVRERAIKFLSTKLKTLPDEVLTKEVEELILT 180 (507)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHHHCHHHH----HHHHHHHHHHSC-HHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHhcChHHH----HHHHHHHHcccc-hHHHHHHHHHHHHHHhhcchhhccHHHHHHHHH
Confidence 777776666666666666666665543332 222233333332 455555544443211111 1122222222
Q ss_pred HHHhhccCCCcccccc---hh---hcCc--cchHHHHHHHHHhhc--------CCC--HHHHHHHHHhhHHHHHHhch--
Q psy14015 171 HFRNLCQDDTPMQQGH---VW---ECGS--GVKAELRSHFRNLCQ--------DDT--PMVRRAAAGKLGELAKVVEV-- 230 (318)
Q Consensus 171 ~~~~l~~~~~~~vR~~---v~---~~~~--~~~~~ll~~l~~l~~--------D~~--~~VR~~aa~~L~~l~~~~~~-- 230 (318)
.+.++..|.+-.-..- +. .+.+ ....+|++.+...+. |.. .+...++-.+++-+......
T Consensus 181 ~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~Stk 260 (507)
T 3u0r_A 181 ESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTR 260 (507)
T ss_dssp HHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHH
T ss_pred HHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHH
Confidence 2333333332210000 00 0000 123456666655422 111 22333444444444433322
Q ss_pred --hhhHhhHHHHHHHhhcC-CcHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccc
Q psy14015 231 --DYLKTDIIPMFVNLAQD-EQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQ 286 (318)
Q Consensus 231 --~~~~~~llp~l~~ll~D-~~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D 286 (318)
+.+.+.++|.+..+... +....+--.+..+..++.+.|........+|.+..+|..
T Consensus 261 Fv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~ 319 (507)
T 3u0r_A 261 FVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLE 319 (507)
T ss_dssp HHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHH
Confidence 23456688877766442 333467778999999999999665566677777777765
No 96
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.79 E-value=0.00017 Score=74.69 Aligned_cols=153 Identities=10% Similarity=-0.010 Sum_probs=97.2
Q ss_pred cchHHhhhccC--chhHHHHHHHHHHHHHHhhCChh---HHhhhHHHHHHHhhc-----CCCchhhhhhhhhhhhhcccc
Q psy14015 91 LLPPLESLATV--EETVVRDKAVESLRLISAQHSPH---DLEAHFVPLVQRLAS-----GDWFTSRTSACGLFSVCYPRV 160 (318)
Q Consensus 91 llp~l~~l~~d--~~~~VR~~a~~~l~~l~~~~~~~---~~~~~ilp~~~~l~~-----d~~~~vR~~a~~~l~~~~~~~ 160 (318)
+++.+.+.+.. .++..|++++-+++.+++...++ .....++|.+.++.. |+...+|.+++..+|....-+
T Consensus 452 ~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl 531 (1023)
T 4hat_C 452 MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFL 531 (1023)
T ss_dssp HHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHH
Confidence 44444433332 35666777777777777666543 223345555555554 234455666666666432211
Q ss_pred CcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh--------
Q psy14015 161 TAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY-------- 232 (318)
Q Consensus 161 ~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~-------- 232 (318)
.. .| ..-+.++..+.+.+.|+++.|..+|+.+|..+++.++..-
T Consensus 532 ~~-----------------~~-----------~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~ 583 (1023)
T 4hat_C 532 KA-----------------HW-----------NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRES 583 (1023)
T ss_dssp HH-----------------CH-----------HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCS
T ss_pred hc-----------------cH-----------HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 10 00 1224456666777789999999999999999999876532
Q ss_pred --hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhh
Q psy14015 233 --LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD 271 (318)
Q Consensus 233 --~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~ 271 (318)
....++..+.....+-+..-+..+.++++.+....+.+.
T Consensus 584 ~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~ 624 (1023)
T 4hat_C 584 EPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVA 624 (1023)
T ss_dssp SCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHH
T ss_pred chhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHh
Confidence 345566666776667777888899999999999998654
No 97
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.77 E-value=0.00032 Score=72.55 Aligned_cols=132 Identities=11% Similarity=0.184 Sum_probs=98.0
Q ss_pred HHHHHHHhhCChhHHhhhHHHHHHHhhcC--CCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhh
Q psy14015 112 ESLRLISAQHSPHDLEAHFVPLVQRLASG--DWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWE 189 (318)
Q Consensus 112 ~~l~~l~~~~~~~~~~~~ilp~~~~l~~d--~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~ 189 (318)
++|..+....+ .+....+++.+.+.+.+ .+|+.|.+++..+|.+.....+..-..
T Consensus 435 d~L~~l~~l~~-~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~---------------------- 491 (1023)
T 4hat_C 435 EVLVYLTHLNV-IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKR---------------------- 491 (1023)
T ss_dssp HHHHHHHHHCH-HHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHH----------------------
T ss_pred HHHHHHhccCH-HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHH----------------------
Confidence 55655555444 46667788888776654 579999999999998877665431111
Q ss_pred cCccchHHHHHHHHHhhc-----CCCHHHHHHHHHhhHHHHHHhchh-hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHH
Q psy14015 190 CGSGVKAELRSHFRNLCQ-----DDTPMVRRAAAGKLGELAKVVEVD-YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSI 263 (318)
Q Consensus 190 ~~~~~~~~ll~~l~~l~~-----D~~~~VR~~aa~~L~~l~~~~~~~-~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l 263 (318)
.-..++|.+.+++. |+...||..++..+|..+..+... .....+++.+...+.|+++.|..+|+.++..+
T Consensus 492 ----~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l 567 (1023)
T 4hat_C 492 ----FVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKI 567 (1023)
T ss_dssp ----HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 12456788888886 577889999999999999987533 23455666777777899999999999999999
Q ss_pred HhhCChh
Q psy14015 264 ASLLSQS 270 (318)
Q Consensus 264 ~~~l~~~ 270 (318)
++.+++.
T Consensus 568 ~~~c~~~ 574 (1023)
T 4hat_C 568 VQKCKYH 574 (1023)
T ss_dssp HHHHTHH
T ss_pred HHHHHHH
Confidence 9877654
No 98
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.65 E-value=0.00036 Score=71.94 Aligned_cols=100 Identities=10% Similarity=0.009 Sum_probs=69.0
Q ss_pred HHHHHHHHhh---cCCCHHHHHHHHHhhHHHHHHhchh--------hhHhhHHHHHHHhhc-----CCcHHHHHHHHHHH
Q psy14015 197 ELRSHFRNLC---QDDTPMVRRAAAGKLGELAKVVEVD--------YLKTDIIPMFVNLAQ-----DEQDSVRLLAVEAC 260 (318)
Q Consensus 197 ~ll~~l~~l~---~D~~~~VR~~aa~~L~~l~~~~~~~--------~~~~~llp~l~~ll~-----D~~~~VR~aa~~~l 260 (318)
.+.+.+.+.+ ...+|..++++..+|+.+++.+... .....+++.+..+++ ++.+.||.+++..+
T Consensus 440 ~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l 519 (980)
T 3ibv_A 440 AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEIL 519 (980)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 3444444444 2456999999999999999876431 123468888888876 99999999999999
Q ss_pred HHHHhhCChhh-hhHhhHHHHHH--hccccccccccCCCCCCchhhHHh
Q psy14015 261 VSIASLLSQSD-VEQLVMPTLRQ--CSVQIVDHKFCPNNEFHPLELHVI 306 (318)
Q Consensus 261 ~~l~~~l~~~~-~~~~l~p~l~~--ll~D~~~~~~~~~~~~~~Vr~~~i 306 (318)
+..++++.... ....+++.++. .+.| +.+.||..+.
T Consensus 520 ~rys~~~~~~~~~l~~~L~~ll~~~gl~~----------~~~~V~~~a~ 558 (980)
T 3ibv_A 520 VRYASFFDYESAAIPALIEYFVGPRGIHN----------TNERVRPRAW 558 (980)
T ss_dssp HHTGGGGGTCCTTHHHHHHHHTSTTTTTC----------CCTTTHHHHH
T ss_pred HHHHHHHhcCchhHHHHHHHHhccccccC----------CChhHHHHHH
Confidence 99999996432 22334444555 5556 4555655544
No 99
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.39 E-value=0.0011 Score=56.63 Aligned_cols=171 Identities=9% Similarity=0.031 Sum_probs=114.8
Q ss_pred hccchHHhhhccCchh--HHHHHHHHHHHHHHhhCCh--hHHh-hhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcc
Q psy14015 89 HCLLPPLESLATVEET--VVRDKAVESLRLISAQHSP--HDLE-AHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAG 163 (318)
Q Consensus 89 ~~llp~l~~l~~d~~~--~VR~~a~~~l~~l~~~~~~--~~~~-~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~ 163 (318)
..-+|.+.+++..+++ .++..|+..+..++..-++ ..+. .-.+|.+.+++.+++..++..|++.|..+... .+.
T Consensus 7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~-~~~ 85 (233)
T 3tt9_A 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFE-DND 85 (233)
T ss_dssp CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-CHH
T ss_pred hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHH
Confidence 4466777777776666 8888888888888754322 2232 23689999999988899999999988876432 122
Q ss_pred hHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhc-CCCHHHHHHHHHhhHHHHHHhc-hhhhHhhHHHHH
Q psy14015 164 VKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ-DDTPMVRRAAAGKLGELAKVVE-VDYLKTDIIPMF 241 (318)
Q Consensus 164 ~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~-D~~~~VR~~aa~~L~~l~~~~~-~~~~~~~llp~l 241 (318)
.+..+ .....+|.+.+++. .+++++|+.++.+|-.++..-. ...+.+.-+|.+
T Consensus 86 nk~~I-------------------------~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~L 140 (233)
T 3tt9_A 86 NKLEV-------------------------AELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTL 140 (233)
T ss_dssp HHHHH-------------------------HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHH
T ss_pred HHHHH-------------------------HHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHH
Confidence 23222 22346899999997 4789999999988888875322 223334456666
Q ss_pred HHhhc-------C---------CcHHHHHHHHHHHHHHHhhCChhh---hh--HhhHHHHHHhccc
Q psy14015 242 VNLAQ-------D---------EQDSVRLLAVEACVSIASLLSQSD---VE--QLVMPTLRQCSVQ 286 (318)
Q Consensus 242 ~~ll~-------D---------~~~~VR~aa~~~l~~l~~~l~~~~---~~--~~l~p~l~~ll~D 286 (318)
..++. | .+..|+..+..+|.+++.. +++. .. .-+++.|..+++.
T Consensus 141 v~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~-~~~~R~~~r~~~Gli~~Lv~~l~~ 205 (233)
T 3tt9_A 141 TENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSA-GADGRKAMRRCDGLIDSLVHYVRG 205 (233)
T ss_dssp CCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTS-CHHHHHHHHTSTTHHHHHHHHHHH
T ss_pred HHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcC-CHHHHHHHHHCCCcHHHHHHHHHh
Confidence 65442 1 2458999999999998753 2221 11 2378888888775
No 100
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.25 E-value=0.015 Score=60.02 Aligned_cols=257 Identities=9% Similarity=0.035 Sum_probs=134.4
Q ss_pred ccHHHHHHHHHhHHHHHHhhChHhH-hhchhhhhhhhcCChHHHHHHHHHHHcccccCcCcccchhcc------chHHhh
Q psy14015 25 EDVQLRLNSIKKLSTIALALGQERT-RGELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCL------LPPLES 97 (318)
Q Consensus 25 ~~~~~R~~~~~~L~~ia~~lg~~~~-~~~llp~l~~l~~D~~~VR~~aa~~L~~l~~~~~~~~~~~~l------lp~l~~ 97 (318)
.++..+..+++.|......+..... ...+++.+-+++.+ +++|.++++.|..+...-..+.....+ -+.+..
T Consensus 205 ~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~-~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~ 283 (980)
T 3ibv_A 205 KNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI-EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSK 283 (980)
T ss_dssp TCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC-hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHH
Confidence 4555555566655555444443322 34678877777776 458999999988876532222211111 123333
Q ss_pred hcc-CchhHHHHHHHHHHHHHHh------hCC----hh------HHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhcccc
Q psy14015 98 LAT-VEETVVRDKAVESLRLISA------QHS----PH------DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRV 160 (318)
Q Consensus 98 l~~-d~~~~VR~~a~~~l~~l~~------~~~----~~------~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~ 160 (318)
+.. ++|.++++.-.+.+..+++ ..+ .+ .....++|.+.....+++..+-..+..-+...+.
T Consensus 284 l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~-- 361 (980)
T 3ibv_A 284 SQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLV-- 361 (980)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHH--
T ss_pred HhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH--
Confidence 332 3344454433333333222 222 11 2233478888888777766554444333222111
Q ss_pred CcchHHHHHHHHHhhccCC-CcccccchhhcCccchHHHHHHHHHhhc---C---------CC----HHHHHHHHHhhHH
Q psy14015 161 TAGVKAELRSHFRNLCQDD-TPMQQGHVWECGSGVKAELRSHFRNLCQ---D---------DT----PMVRRAAAGKLGE 223 (318)
Q Consensus 161 ~~~~~~~l~~~~~~l~~~~-~~~vR~~v~~~~~~~~~~ll~~l~~l~~---D---------~~----~~VR~~aa~~L~~ 223 (318)
.+....... .+... ...-..+++.+.+-++ | ++ -+.|+... .+-.
T Consensus 362 ----------~~~~~~~~~~~~~~~-------~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d 423 (980)
T 3ibv_A 362 ----------SLRKESSSKELSASL-------KEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQD 423 (980)
T ss_dssp ----------HHHHHTTSCCCCHHH-------HHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHH
T ss_pred ----------HHHhccccccccHHH-------HHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHH
Confidence 111000000 00000 0011223333332221 1 11 25788888 7778
Q ss_pred HHHHhchhhhHh----hHHHHHHHhh---cCCcHHHHHHHHHHHHHHHhhCChh--------hhhHhhHHHHHHhccccc
Q psy14015 224 LAKVVEVDYLKT----DIIPMFVNLA---QDEQDSVRLLAVEACVSIASLLSQS--------DVEQLVMPTLRQCSVQIV 288 (318)
Q Consensus 224 l~~~~~~~~~~~----~llp~l~~ll---~D~~~~VR~aa~~~l~~l~~~l~~~--------~~~~~l~p~l~~ll~D~~ 288 (318)
....+|++.+.. .+.+.+.+.+ ..++|..+.+++.+++.+++.+... .....+++.+..+++..
T Consensus 424 ~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~- 502 (980)
T 3ibv_A 424 TINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQ- 502 (980)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSS-
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCC-
Confidence 888888887767 6777777665 3578999999999999999987642 12345788888887610
Q ss_pred cccccCCCCCCchhhHHhh
Q psy14015 289 DHKFCPNNEFHPLELHVIS 307 (318)
Q Consensus 289 ~~~~~~~~~~~~Vr~~~i~ 307 (318)
-...+.|-||.....
T Consensus 503 ----i~~~~hp~V~~~~~~ 517 (980)
T 3ibv_A 503 ----VCRHPHPLVQLLYME 517 (980)
T ss_dssp ----TTTCCCHHHHHHHHH
T ss_pred ----CCCCCCHHHHHHHHH
Confidence 001167777776654
No 101
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.14 E-value=0.0029 Score=54.05 Aligned_cols=130 Identities=10% Similarity=0.037 Sum_probs=84.4
Q ss_pred HHHHHHHhhcCCCc--hhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhc
Q psy14015 130 FVPLVQRLASGDWF--TSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ 207 (318)
Q Consensus 130 ilp~~~~l~~d~~~--~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~ 207 (318)
-+|.+.+++++++. .++..|+..+..+...- ...+..+ .....+|.|.+++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I-------------------------~~~G~Ip~LV~lL~ 62 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRV-------------------------NQLRGILKLLQLLK 62 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHH-------------------------HHTTHHHHHHHGGG
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHH-------------------------HHcCCHHHHHHHHc
Confidence 45666677776665 67766766655433211 1122221 12345899999999
Q ss_pred CCCHHHHHHHHHhhHHHHHH-hc-hhhh-HhhHHHHHHHhhc-CCcHHHHHHHHHHHHHHHhhC-ChhhhhHhhHHHHHH
Q psy14015 208 DDTPMVRRAAAGKLGELAKV-VE-VDYL-KTDIIPMFVNLAQ-DEQDSVRLLAVEACVSIASLL-SQSDVEQLVMPTLRQ 282 (318)
Q Consensus 208 D~~~~VR~~aa~~L~~l~~~-~~-~~~~-~~~llp~l~~ll~-D~~~~VR~aa~~~l~~l~~~l-~~~~~~~~l~p~l~~ 282 (318)
.++..+++.|+.+|..++.. -. ...+ ..-.+|.+.++++ .+++.+|..++.+|-.++..- .+....+.-+|.|..
T Consensus 63 s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ 142 (233)
T 3tt9_A 63 VQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTE 142 (233)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHH
Confidence 99999999999999999852 11 1112 2348899999997 578999999999999998532 122222334666666
Q ss_pred hcc
Q psy14015 283 CSV 285 (318)
Q Consensus 283 ll~ 285 (318)
++.
T Consensus 143 ll~ 145 (233)
T 3tt9_A 143 NII 145 (233)
T ss_dssp CCC
T ss_pred HHh
Confidence 554
No 102
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=96.64 E-value=0.02 Score=55.58 Aligned_cols=133 Identities=12% Similarity=0.053 Sum_probs=82.2
Q ss_pred HHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCC
Q psy14015 130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDD 209 (318)
Q Consensus 130 ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~ 209 (318)
.++.+..+++..++.+|..++.+|..++..-+..++..+.. ...-++.+..+++|+
T Consensus 123 ~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~------------------------~p~gi~~Lv~lL~d~ 178 (651)
T 3grl_A 123 NVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILV------------------------SPMGVSRLMDLLADS 178 (651)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHH------------------------STTHHHHHHGGGGCS
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHh------------------------CcccHHHHHHHHhCc
Confidence 67888889999999999999999987765544333333311 123478899999999
Q ss_pred CHHHHHHHHHhhHHHHHHhc-hhh--hHhhHHHHHHHhhcCCcH----HHHHHHHHHHHHHHhhCC--hhhhh-HhhHHH
Q psy14015 210 TPMVRRAAAGKLGELAKVVE-VDY--LKTDIIPMFVNLAQDEQD----SVRLLAVEACVSIASLLS--QSDVE-QLVMPT 279 (318)
Q Consensus 210 ~~~VR~~aa~~L~~l~~~~~-~~~--~~~~llp~l~~ll~D~~~----~VR~aa~~~l~~l~~~l~--~~~~~-~~l~p~ 279 (318)
...+|..++.-|..++..=. -++ ..+-.++.+.++++.+.. .|=.-++..+.+++..=. +..+. ...+|.
T Consensus 179 rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~ 258 (651)
T 3grl_A 179 REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQR 258 (651)
T ss_dssp SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGG
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHH
Confidence 99999999988888885211 001 122345555555555444 333334455666665421 12222 236677
Q ss_pred HHHhccc
Q psy14015 280 LRQCSVQ 286 (318)
Q Consensus 280 l~~ll~D 286 (318)
+.++++.
T Consensus 259 L~~LL~~ 265 (651)
T 3grl_A 259 MKPWFEV 265 (651)
T ss_dssp GGGGGCC
T ss_pred HHHHhCC
Confidence 7777764
No 103
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=96.63 E-value=0.39 Score=43.78 Aligned_cols=255 Identities=12% Similarity=0.071 Sum_probs=144.1
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccch
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLP 93 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp 93 (318)
+..++...+.....+++...+.+-++...-.|. ...+++|.+.++..|.+. ||+.++.-+.+.+. ...+....+++
T Consensus 27 v~~lln~A~~~~~~~Kl~~L~q~~EL~l~~dps-Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~--~~~el~~~~l~ 103 (386)
T 3o2t_A 27 VVDLLNQAALITNDSKITVLKQVQELIINKDPT-LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACK--RDIELLLKLIA 103 (386)
T ss_dssp HHHHHHHHHHCCSTHHHHHHHHHHHHHHTTCGG-GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHH--HCGGGHHHHHH
T ss_pred HHHHHHhhhccChHHHHHHHHHHHHHHhccCHH-HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 334443333222247889999999986554554 678899999999998665 99999999888764 34556677888
Q ss_pred HHhhhccCchhHHHHHHHHHHHHHHhhC--------Ch----hH---HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhcc
Q psy14015 94 PLESLATVEETVVRDKAVESLRLISAQH--------SP----HD---LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYP 158 (318)
Q Consensus 94 ~l~~l~~d~~~~VR~~a~~~l~~l~~~~--------~~----~~---~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~ 158 (318)
.|..|+.|++..|-..++.+...+.... +. +. ....+-..+.++..+.+..+|..+++.+..++-
T Consensus 104 ~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl 183 (386)
T 3o2t_A 104 NLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIV 183 (386)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence 9999999999888887777766655321 10 11 111233444455666677888888776665432
Q ss_pred ccCcc------hHHHHHHHHHhhccCCCc-cccc-c-hhhcC--ccchHHHHHHHHHhhcCC--CHHHHHHHHHhhHHHH
Q psy14015 159 RVTAG------VKAELRSHFRNLCQDDTP-MQQG-H-VWECG--SGVKAELRSHFRNLCQDD--TPMVRRAAAGKLGELA 225 (318)
Q Consensus 159 ~~~~~------~~~~l~~~~~~l~~~~~~-~vR~-~-v~~~~--~~~~~~ll~~l~~l~~D~--~~~VR~~aa~~L~~l~ 225 (318)
..+.. .+.. . .+.+- .|.. + +.... +..-..++..+++.+.++ ++-.=-++..+|+.++
T Consensus 184 ~qS~~~~d~~~p~~~------~--~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Ia 255 (386)
T 3o2t_A 184 TLSPRMADSEIPRRQ------E--HDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIA 255 (386)
T ss_dssp HTSCCCTTCCCCGGG------T--TSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCccccccc------C--CCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHH
Confidence 21110 0000 0 00000 0000 0 00000 012346777778777753 2333345667777776
Q ss_pred HHhchhhhHhhHHHHHHHhhcCC--------cHHHHHHHHHHHHHHHhhCChhhhhHhhHHHHHH
Q psy14015 226 KVVEVDYLKTDIIPMFVNLAQDE--------QDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQ 282 (318)
Q Consensus 226 ~~~~~~~~~~~llp~l~~ll~D~--------~~~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ 282 (318)
.. ...+...++|++..+--.. ...||++.-..+..+.+.=+.......+...|..
T Consensus 256 k~--RP~~~~rIl~aL~~l~~n~p~t~sk~qvkSv~KtLR~~Ll~lLK~p~s~~~~~~I~~~L~~ 318 (386)
T 3o2t_A 256 RQ--RPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVLKHPASLEFQAQITTLLVD 318 (386)
T ss_dssp HH--SGGGHHHHHHHHHHHHHCC----CGGGHHHHHHHHHHHHHHHHTSGGGGGGHHHHHHHHHH
T ss_pred Hh--cHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHH
Confidence 63 2334567888877653221 2357777777777777633222333334444333
No 104
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=96.63 E-value=0.0024 Score=65.64 Aligned_cols=170 Identities=14% Similarity=-0.002 Sum_probs=101.7
Q ss_pred ccchHHhhhccCchh-HHHHH-HHHHHHHHHhhCChhHHhhhHHHHHHHhhc-CCCchhhhhhhhhhhhhccccCcchHH
Q psy14015 90 CLLPPLESLATVEET-VVRDK-AVESLRLISAQHSPHDLEAHFVPLVQRLAS-GDWFTSRTSACGLFSVCYPRVTAGVKA 166 (318)
Q Consensus 90 ~llp~l~~l~~d~~~-~VR~~-a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~-d~~~~vR~~a~~~l~~~~~~~~~~~~~ 166 (318)
.++|.+..+..+.++ +.... |..++..++...-.......++..+.+..+ +++| .|.++...+..++
T Consensus 760 ~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~--------- 829 (997)
T 1vsy_5 760 YVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFL--------- 829 (997)
T ss_dssp TTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHH---------
Confidence 377878777666654 55555 555566665544333333335555555555 6789 9998877655432
Q ss_pred HHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCC-HHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhh
Q psy14015 167 ELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDT-PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLA 245 (318)
Q Consensus 167 ~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~-~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll 245 (318)
|..+.- +.+..+..+...+..++.|++ .+||..|+..|+.+....+.....+.++..|...+
T Consensus 830 -----f~n~f~------------l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~ 892 (997)
T 1vsy_5 830 -----SAELLQ------------LTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGL 892 (997)
T ss_dssp -----HHHTTT------------SCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSS
T ss_pred -----HHHHHH------------cCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 222111 111234567889999999999 99999999999999876523122235655555544
Q ss_pred cC---C---------cHHHHHHHHHHHHHHHhhCChh----hhhHhhHHHHHHhccc
Q psy14015 246 QD---E---------QDSVRLLAVEACVSIASLLSQS----DVEQLVMPTLRQCSVQ 286 (318)
Q Consensus 246 ~D---~---------~~~VR~aa~~~l~~l~~~l~~~----~~~~~l~p~l~~ll~D 286 (318)
.. . +-..|-+++-+|+.+...++=. .-...++..|...+.|
T Consensus 893 ~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~ 949 (997)
T 1vsy_5 893 DVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWART 949 (997)
T ss_dssp TTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSS
T ss_pred hhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCC
Confidence 22 1 1156777777888888766332 2333444455555555
No 105
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=96.56 E-value=0.0031 Score=62.45 Aligned_cols=69 Identities=12% Similarity=0.148 Sum_probs=35.2
Q ss_pred hchhhhhhhhcCChHHHHHHHHHHHcccccCcCcccchhc------cchHHhhhccCchhHHHHHHHHHHHHHHhhCC
Q psy14015 51 GELIPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHC------LLPPLESLATVEETVVRDKAVESLRLISAQHS 122 (318)
Q Consensus 51 ~~llp~l~~l~~D~~~VR~~aa~~L~~l~~~~~~~~~~~~------llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~ 122 (318)
+.++|.+..+-+.+...|..++.+|..++. ++..... +.+++..++.|++..||.+|+.+|..++...+
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~---~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g 108 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQ---DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEE 108 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTT---SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHc---CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence 456666655433222266666666666653 1111111 22345555666666666666666666655433
No 106
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.40 E-value=0.21 Score=46.64 Aligned_cols=142 Identities=13% Similarity=0.149 Sum_probs=85.8
Q ss_pred hhcCChHHHHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhh
Q psy14015 59 ETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLA 138 (318)
Q Consensus 59 ~l~~D~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~ 138 (318)
...+-+...++-++..++++-+.+ +...+.-+..+..|+.|++..||..|+..|..++.. +. ...+..++.+|+
T Consensus 36 ~~~kg~~k~K~LaaQ~I~kffk~F--P~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~---~~-i~kiaDvL~QlL 109 (507)
T 3u0r_A 36 DGVKGGTKEKRLAAQFIPKFFKHF--PELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG---EN-LPRVADILTQLL 109 (507)
T ss_dssp HGGGSCHHHHHHHHHHHHHHGGGC--GGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT---TC-HHHHHHHHHHHT
T ss_pred HhcCCCHHHHHHHHHHHHHHHhhC--hhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh---hh-hhhHHHHHHHHH
Confidence 444444448888888888887655 345556777889999999999999999999999875 22 334667777777
Q ss_pred cCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchh--------hcC-----ccchHHHHHHHHHh
Q psy14015 139 SGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVW--------ECG-----SGVKAELRSHFRNL 205 (318)
Q Consensus 139 ~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~--------~~~-----~~~~~~ll~~l~~l 205 (318)
+.++..-+..+-..|-.++ ....+..+...|.++... ...+|.++. .++ ++....+.....+.
T Consensus 110 qtdd~~E~~~V~~sL~sll---k~Dpk~tl~~lf~~i~~~-~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~ 185 (507)
T 3u0r_A 110 QTDDSAEFNLVNNALLSIF---KMDAKGTLGGLFSQILQG-EDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKV 185 (507)
T ss_dssp TCCCHHHHHHHHHHHHHHH---HHCHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHH---hcChHHHHHHHHHHHccc-chHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHH
Confidence 7655433332222222222 122344444455555543 244554321 222 23455677777788
Q ss_pred hcCCC
Q psy14015 206 CQDDT 210 (318)
Q Consensus 206 ~~D~~ 210 (318)
++|-.
T Consensus 186 L~DVT 190 (507)
T 3u0r_A 186 LEDVT 190 (507)
T ss_dssp TTSCC
T ss_pred hcccc
Confidence 87755
No 107
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=96.38 E-value=0.028 Score=58.34 Aligned_cols=161 Identities=9% Similarity=-0.027 Sum_probs=97.9
Q ss_pred cccchhccchHHhhhccC--chhHHHHHHHHHHHHHHhhCChh---HHhhhHHHHHHHhhcCC-----Cchhhhhhhhhh
Q psy14015 84 GPEYVHCLLPPLESLATV--EETVVRDKAVESLRLISAQHSPH---DLEAHFVPLVQRLASGD-----WFTSRTSACGLF 153 (318)
Q Consensus 84 ~~~~~~~llp~l~~l~~d--~~~~VR~~a~~~l~~l~~~~~~~---~~~~~ilp~~~~l~~d~-----~~~vR~~a~~~l 153 (318)
+.+..+.+++.+...+.. .++..++++.-+++.++....++ .+...+++.+..+...+ ...+|.+.+.++
T Consensus 471 ~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vl 550 (1073)
T 3gjx_A 471 YVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIV 550 (1073)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHH
Confidence 334444455555443332 34777888888888887766642 23334566666665433 233444444555
Q ss_pred hhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh-
Q psy14015 154 SVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY- 232 (318)
Q Consensus 154 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~- 232 (318)
|.... ++.. .| ..-+.++..+++.+.|.++.|..+|+.+|..++..++...
T Consensus 551 grY~~--------wl~~---------h~-----------~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv 602 (1073)
T 3gjx_A 551 GQYPR--------FLRA---------HW-----------KFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFV 602 (1073)
T ss_dssp HHCHH--------HHHH---------CH-----------HHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGT
T ss_pred hhhHH--------HHHh---------CH-----------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 43211 1100 00 1224456666777889999999999999999999887542
Q ss_pred ---------hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhh
Q psy14015 233 ---------LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV 272 (318)
Q Consensus 233 ---------~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~ 272 (318)
..+.++..+.....+=...-.....++++.+....+.+..
T Consensus 603 ~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~ 651 (1073)
T 3gjx_A 603 QVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTV 651 (1073)
T ss_dssp SCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred hccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcch
Confidence 2344555555555555566667778899999998887653
No 108
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=96.29 E-value=0.12 Score=54.53 Aligned_cols=218 Identities=8% Similarity=-0.024 Sum_probs=129.3
Q ss_pred ccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHHHHHHHHHHHcccccCc---C---c----------ccch
Q psy14015 25 EDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGTFTPNV---G---G----------PEYV 88 (318)
Q Consensus 25 ~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~VR~~aa~~L~~l~~~~---~---~----------~~~~ 88 (318)
.+..+|..++..+..|++.-.|+ .|.++++.+.++++.+...+..+...|..+.+.+ . . ....
T Consensus 108 ~~~~vr~kla~~la~Ia~~d~p~-~Wp~ll~~L~~~~~~~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~ 186 (1204)
T 3a6p_A 108 EENHIKDALSRIVVEMIKREWPQ-HWPDMLIELDTLSKQGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNM 186 (1204)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSTT-TCTTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTH
T ss_pred ccHHHHHHHHHHHHHHHHHhCcc-cchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHH
Confidence 46889999999999999886664 5789999998887654345555666666554321 0 0 0011
Q ss_pred hccchHHhhhccC-------------------chhHHHHHHHHHHHHHHhhCChhHHhh---hHHHHHHHhhcCCCchhh
Q psy14015 89 HCLLPPLESLATV-------------------EETVVRDKAVESLRLISAQHSPHDLEA---HFVPLVQRLASGDWFTSR 146 (318)
Q Consensus 89 ~~llp~l~~l~~d-------------------~~~~VR~~a~~~l~~l~~~~~~~~~~~---~ilp~~~~l~~d~~~~vR 146 (318)
+.+++.+.+++.+ ++..++..+++++.....-.+...+.+ .+++.+..+++++ .+|
T Consensus 187 ~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~~--~lr 264 (1204)
T 3a6p_A 187 ERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNEQ--ELQ 264 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGCT--TTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCCH--HHH
Confidence 2355555544433 234577778887776666555544333 3788888777754 678
Q ss_pred hhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhh--------cCCCHHHHHHHH
Q psy14015 147 TSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLC--------QDDTPMVRRAAA 218 (318)
Q Consensus 147 ~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~--------~D~~~~VR~~aa 218 (318)
..|++.|..++.+-... .+ +..+... .....+..+.... .|++.++++..+
T Consensus 265 ~~A~ecL~~i~s~~~~~--~~----~~~li~~---------------l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~ 323 (1204)
T 3a6p_A 265 LGAAECLLIAVSRKGKL--ED----RKPLMVL---------------FGDVAMHYILSAAQTADGGGLVEKHYVFLKRLC 323 (1204)
T ss_dssp HHHHHHHHHHHTCCSCH--HH----HGGGGGG---------------GSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCh--hh----HHHHHHH---------------HhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHH
Confidence 89988888776543210 11 1111110 1111122222222 333467777777
Q ss_pred HhhHHHHHHhc----------hhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhh
Q psy14015 219 GKLGELAKVVE----------VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASL 266 (318)
Q Consensus 219 ~~L~~l~~~~~----------~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~ 266 (318)
+.+..++..+- .......+++.+..+.++++..|-..+...-..+.+.
T Consensus 324 ~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 324 QVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 77776663321 1122457899999999999888777776655555544
No 109
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=96.28 E-value=0.029 Score=58.17 Aligned_cols=126 Identities=10% Similarity=0.193 Sum_probs=89.6
Q ss_pred hhCChhHHhhhHHHHHHHhhcC--CCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchH
Q psy14015 119 AQHSPHDLEAHFVPLVQRLASG--DWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKA 196 (318)
Q Consensus 119 ~~~~~~~~~~~ilp~~~~l~~d--~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~ 196 (318)
..+..++....+.+.+.+..++ .+|..+.+++..+|.+.+...+..-+. .-.
T Consensus 467 t~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~--------------------------~Lp 520 (1073)
T 3gjx_A 467 THLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKR--------------------------FLV 520 (1073)
T ss_dssp HHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHH--------------------------HHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccc--------------------------hHH
Confidence 3555566677788887765544 359999999999998866555321111 124
Q ss_pred HHHHHHHHhhcCC-----CHHHHHHHHHhhHHHHHHhchhh-hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChh
Q psy14015 197 ELRSHFRNLCQDD-----TPMVRRAAAGKLGELAKVVEVDY-LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 270 (318)
Q Consensus 197 ~ll~~l~~l~~D~-----~~~VR~~aa~~L~~l~~~~~~~~-~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~ 270 (318)
.+++.+..+++.+ .+.+|..+...+|+..+.+...+ ....++..+...+.|+++.|+.+|+.++..+++.+++.
T Consensus 521 ~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~ 600 (1073)
T 3gjx_A 521 TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRH 600 (1073)
T ss_dssp HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778877544 46678878889999888775432 34556666667778999999999999999999877664
No 110
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=96.08 E-value=0.0092 Score=59.06 Aligned_cols=90 Identities=11% Similarity=0.113 Sum_probs=68.6
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh--hhHhh-HHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhhh
Q psy14015 196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD--YLKTD-IIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV 272 (318)
Q Consensus 196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~--~~~~~-llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~~ 272 (318)
+.++|.+ +.++++++..|..|+.+++.++..-... ...+. +.+++..++.|++..||.+++.+|.+++..-|.+.+
T Consensus 34 ~~i~Pll-~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 34 DKILPVL-KDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HTTHHHH-HHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhHHHHH-HHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 4456655 5578999999999999999998632211 12333 446788999999999999999999999988887654
Q ss_pred hH----hhHHHHHHhccc
Q psy14015 273 EQ----LVMPTLRQCSVQ 286 (318)
Q Consensus 273 ~~----~l~p~l~~ll~D 286 (318)
.. .++|.|..+++.
T Consensus 113 ~~l~~~~il~~L~~~l~~ 130 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKA 130 (684)
T ss_dssp HHHHHTTHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHh
Confidence 33 488888888764
No 111
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=95.86 E-value=0.32 Score=47.17 Aligned_cols=91 Identities=13% Similarity=0.039 Sum_probs=70.1
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch---hhhH--hhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhC---
Q psy14015 196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV---DYLK--TDIIPMFVNLAQDEQDSVRLLAVEACVSIASLL--- 267 (318)
Q Consensus 196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~---~~~~--~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l--- 267 (318)
.+-++.++.+++.++..+|..+.+.|..++..-+. +.+. ..-+|.+..+++|+...+|..++..|..++..=
T Consensus 121 ~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~i 200 (651)
T 3grl_A 121 QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAI 200 (651)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHH
T ss_pred CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHH
Confidence 46689999999999999999999999999976443 2222 246789999999999999999998888888532
Q ss_pred ChhhhhHhhHHHHHHhccc
Q psy14015 268 SQSDVEQLVMPTLRQCSVQ 286 (318)
Q Consensus 268 ~~~~~~~~l~p~l~~ll~D 286 (318)
.+-...+..++.++.++..
T Consensus 201 QklVAFEnaFe~Lf~Ii~~ 219 (651)
T 3grl_A 201 QKIVAFENAFERLLDIITE 219 (651)
T ss_dssp HHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHh
Confidence 1112234567888888876
No 112
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.73 E-value=0.084 Score=55.63 Aligned_cols=225 Identities=11% Similarity=0.047 Sum_probs=128.1
Q ss_pred CchHHHHHHHhcCc--cHHHHHHHHHhHHHHHHhhChHhHhhchhhhhh-hhc-CChHH-HHHHHHHHHcccccC----c
Q psy14015 12 LYPIAVLIDELKNE--DVQLRLNSIKKLSTIALALGQERTRGELIPFLT-ETI-YDEDE-VLLALAEQLGTFTPN----V 82 (318)
Q Consensus 12 l~~i~~l~~~l~~~--~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~-~l~-~D~~~-VR~~aa~~L~~l~~~----~ 82 (318)
+..+...+....+. +...|..|-+.|...-.. |+ -.+.+. .+. ...+. ||..++..|.+.... +
T Consensus 10 ~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~--p~-----~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l 82 (1204)
T 3a6p_A 10 CEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK--CP-----ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGM 82 (1204)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH--CT-----THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGS
T ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC--ch-----HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccC
Confidence 33466666666555 667899998888876322 11 112222 233 33344 999999999877632 2
Q ss_pred Cc---ccchhccchHHhhhcc---CchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhh
Q psy14015 83 GG---PEYVHCLLPPLESLAT---VEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVC 156 (318)
Q Consensus 83 ~~---~~~~~~llp~l~~l~~---d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~ 156 (318)
.. ....+.++..+.+... ++...||.+...++..++..--++.+.+ +++.+.++++. +...+..+..+|..+
T Consensus 83 ~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~-ll~~L~~~~~~-~~~~~e~~L~iL~~L 160 (1204)
T 3a6p_A 83 SRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPD-MLIELDTLSKQ-GETQTELVMFILLRL 160 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTT-HHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchH-HHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence 21 1223445555443321 2468999999999999998743344443 66777777665 334566666666655
Q ss_pred cccc------CcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcC-------------------CCH
Q psy14015 157 YPRV------TAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQD-------------------DTP 211 (318)
Q Consensus 157 ~~~~------~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D-------------------~~~ 211 (318)
...+ ....+..+.+.+.. .-..+++.+.+.+++ ++.
T Consensus 161 ~Eev~~~~~~~~~r~~~l~~~l~~-------------------~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~ 221 (1204)
T 3a6p_A 161 AEDVVTFQTLPPQRRRDIQQTLTQ-------------------NMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANC 221 (1204)
T ss_dssp HHHHHTSCCSCHHHHHHHHHHHHH-------------------THHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHH
T ss_pred HHHHccccchHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhH
Confidence 4321 11111111111110 112344444444432 234
Q ss_pred HHHHHHHHhhHHHHHHhchhhhHh---hHHHHHHHhhcCCcHHHHHHHHHHHHHHHhh
Q psy14015 212 MVRRAAAGKLGELAKVVEVDYLKT---DIIPMFVNLAQDEQDSVRLLAVEACVSIASL 266 (318)
Q Consensus 212 ~VR~~aa~~L~~l~~~~~~~~~~~---~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~ 266 (318)
.++..+.+++..+...+....+.+ .+++.+..++.++ .+|.+|+++|..+...
T Consensus 222 ~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~~--~lr~~A~ecL~~i~s~ 277 (1204)
T 3a6p_A 222 RVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNEQ--ELQLGAAECLLIAVSR 277 (1204)
T ss_dssp HHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGCT--TTHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCCH--HHHHHHHHHHHHHHhC
Confidence 577777777776655444333322 4888888888875 4899999999998863
No 113
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=95.61 E-value=0.61 Score=40.07 Aligned_cols=99 Identities=12% Similarity=0.070 Sum_probs=58.1
Q ss_pred HHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchH
Q psy14015 16 AVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPP 94 (318)
Q Consensus 16 ~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~ 94 (318)
..++...+......++...++.-+++-.-.|. ...+++|.+..+..|.+. ||+.++.-+.+.+. ..++....+++.
T Consensus 18 ~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~-ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~--~k~~l~~~~l~~ 94 (257)
T 3gs3_A 18 VDWCNELVIASPSTKCELLAKVQETVLGSCAE-LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCK--VKVELLPHVINV 94 (257)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGG-GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHH--HCGGGHHHHHHH
T ss_pred HHHHHHhhhcCcHHHHHHHHHHHHHHHccCHh-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 34444444322246667777777765443343 556666666666666544 77777777766553 234455556667
Q ss_pred HhhhccCchhHHHHHHHHHHHHH
Q psy14015 95 LESLATVEETVVRDKAVESLRLI 117 (318)
Q Consensus 95 l~~l~~d~~~~VR~~a~~~l~~l 117 (318)
+..++.|++..|-..++.+...+
T Consensus 95 L~~Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 95 VSMLLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHH
Confidence 77777777776666666555444
No 114
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=95.57 E-value=0.19 Score=43.28 Aligned_cols=70 Identities=23% Similarity=0.270 Sum_probs=57.4
Q ss_pred chHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHh
Q psy14015 194 VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIAS 265 (318)
Q Consensus 194 ~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~ 265 (318)
...++++-++.+..|++.+||+.++.-+.+.+.. .......+++.+..+++|++..|-+.+..+...+-.
T Consensus 50 ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~ 119 (257)
T 3gs3_A 50 LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYK 119 (257)
T ss_dssp GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 5577788888899999999999999999888853 234567899999999999999998888877766553
No 115
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=94.35 E-value=0.17 Score=51.99 Aligned_cols=191 Identities=9% Similarity=0.033 Sum_probs=116.3
Q ss_pred hhhhhhhhcCCh-H-HHHHH-HHHHHcccccCcCcccchhccchHHhhhcc-CchhHHHHHHHHHHHHHHh--h--CChh
Q psy14015 53 LIPFLTETIYDE-D-EVLLA-LAEQLGTFTPNVGGPEYVHCLLPPLESLAT-VEETVVRDKAVESLRLISA--Q--HSPH 124 (318)
Q Consensus 53 llp~l~~l~~D~-~-~VR~~-aa~~L~~l~~~~~~~~~~~~llp~l~~l~~-d~~~~VR~~a~~~l~~l~~--~--~~~~ 124 (318)
++|++..+.++. + +.... +...+..++...-.+.....++..+.+... ++++ +|..++.-+-.+.- . ++.+
T Consensus 761 llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~ 839 (997)
T 1vsy_5 761 VLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEE 839 (997)
T ss_dssp TTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTT
T ss_pred HHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHH
Confidence 777777666553 2 33333 334455554433344445556666666665 5678 99988776544432 2 2334
Q ss_pred HHhhhHHHHHHHhhcCCC-chhhhhhhhhhhhhcccc-CcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHH
Q psy14015 125 DLEAHFVPLVQRLASGDW-FTSRTSACGLFSVCYPRV-TAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHF 202 (318)
Q Consensus 125 ~~~~~ilp~~~~l~~d~~-~~vR~~a~~~l~~~~~~~-~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l 202 (318)
+. ..+...+.+++.|+. ..||..|+..|+-++... ......++...|.+.+.... .. ..+....
T Consensus 840 ~~-~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~------------~~-~~~~~~~ 905 (997)
T 1vsy_5 840 EK-NKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNK------------YT-SKERQKL 905 (997)
T ss_dssp HH-HHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTS------------SC-HHHHHHH
T ss_pred HH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcc------------cc-ccccccc
Confidence 33 457888999999999 999999999998776554 21223344344443321100 00 1111100
Q ss_pred HHhhcCCCHHHHHHHHHhhHHHHHHhc-----hhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHh
Q psy14015 203 RNLCQDDTPMVRRAAAGKLGELAKVVE-----VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIAS 265 (318)
Q Consensus 203 ~~l~~D~~~~VR~~aa~~L~~l~~~~~-----~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~ 265 (318)
+..-..|.+++-.|+++...+. |+|+ .+++..+...+.||.+ |+.++-++++.+-.
T Consensus 906 -----~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~-P~~l~~La~~~~~~~~-i~~tvk~tlseFkr 966 (997)
T 1vsy_5 906 -----SKTDIKIHGNVLGLGAIISAFPYVFPLPPWI-PKNLSNLSSWARTSGM-TGNAAKNTISEFKK 966 (997)
T ss_dssp -----HHHCHHHHHHHHHHHHHHTTCSCCSSCCTHH-HHHHHHHHTTSSSCSS-HHHHTHHHHHHHHH
T ss_pred -----chHHHHHHHHHHHHHHHHhhCCCCCCCCccc-HHHHHHHHHHhCCCCc-hHHHHHHHHHHHHh
Confidence 1112678899999999998653 3454 5677778878889877 99998888888764
No 116
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=94.19 E-value=0.28 Score=41.13 Aligned_cols=126 Identities=7% Similarity=-0.061 Sum_probs=82.3
Q ss_pred HHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCC-hHH-HHHHHHHHHcccccCcCcccchhccchHHhh
Q psy14015 20 DELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYD-EDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLES 97 (318)
Q Consensus 20 ~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D-~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ 97 (318)
+..+++..+.|.-++.-+......+. .+-++.+..++.+ +.| +=...+..++.+.. .....+.+.+..
T Consensus 62 ~L~~s~~~E~r~la~~~l~~~~~~~~-----~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~-----~~~~~~~~~i~~ 131 (220)
T 2b6c_A 62 AYYQKTEREYQYVAIDLALQNVQRFS-----LEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVA-----LHLTELPTIFAL 131 (220)
T ss_dssp HHHTSSSHHHHHHHHHHHHHTGGGCC-----HHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHH-----HSGGGHHHHHHH
T ss_pred HHHcCchhHHHHHHHHHHHHHHhhCC-----HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHH-----HChHHHHHHHHH
Confidence 33455667777777777665432222 2346677777755 556 55655555555542 123446678899
Q ss_pred hccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccc
Q psy14015 98 LATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPR 159 (318)
Q Consensus 98 l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~ 159 (318)
.+.|++..+|+.|+..+..... +.-...+++++..+.+|+.+.||++.+..|..+...
T Consensus 132 W~~s~~~w~rR~ai~~~l~~~~----~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~ 189 (220)
T 2b6c_A 132 FYGAENFWNRRVALNLQLMLKE----KTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT 189 (220)
T ss_dssp HTTCSSHHHHHHHHHTTTTCGG----GCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHcCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Confidence 9999999999998876543222 222344788888899999999999998888766443
No 117
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=93.98 E-value=0.81 Score=38.24 Aligned_cols=67 Identities=12% Similarity=-0.051 Sum_probs=49.9
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhh
Q psy14015 196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASL 266 (318)
Q Consensus 196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~ 266 (318)
+.+.+.+...++|++.-+|+.++..+-.. ..+...+.+++++..++.|+++.||++.+.+|..+++.
T Consensus 123 ~~~~~~i~~W~~s~~~w~rR~ai~~~l~~----~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~ 189 (220)
T 2b6c_A 123 TELPTIFALFYGAENFWNRRVALNLQLML----KEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT 189 (220)
T ss_dssp GGHHHHHHHHTTCSSHHHHHHHHHTTTTC----GGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHH----HHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Confidence 34567788889999877777666654212 22223466889999999999999999999999988865
No 118
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=93.88 E-value=0.63 Score=42.39 Aligned_cols=69 Identities=19% Similarity=0.118 Sum_probs=57.5
Q ss_pred chHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy14015 194 VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIA 264 (318)
Q Consensus 194 ~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~ 264 (318)
.-.++++.++++..|++.+||+.++.-+.+.+.. .......+++.+..+++|++..|-+.++.+...+-
T Consensus 60 Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslY 128 (386)
T 3o2t_A 60 LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLKLIANLNMLLRDENVNVVKKAILTMTQLY 128 (386)
T ss_dssp GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999988863 22335789999999999999999888887777655
No 119
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=93.57 E-value=1.2 Score=46.28 Aligned_cols=68 Identities=9% Similarity=-0.041 Sum_probs=49.1
Q ss_pred HHHHHHHHHhh--cCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCCh
Q psy14015 196 AELRSHFRNLC--QDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ 269 (318)
Q Consensus 196 ~~ll~~l~~l~--~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~ 269 (318)
+.+.+.+.++. .++..+||-+|+..|-+... . ...+-.+...+-.|++..|+......|..+++.-.+
T Consensus 511 ~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P---~---~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 511 RKVQEIVLPIFLNVAIKSELRIRSCIVFFESKP---S---VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTCC---C---HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHCc---C---HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 45667777877 45779999999888764321 1 123444555667889999999999999999987655
No 120
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=93.03 E-value=0.88 Score=38.35 Aligned_cols=131 Identities=10% Similarity=0.063 Sum_probs=76.8
Q ss_pred hHHhhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhc-CCCchh-hhhhhhhhhhhccccCcchHHHHHH
Q psy14015 93 PPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLAS-GDWFTS-RTSACGLFSVCYPRVTAGVKAELRS 170 (318)
Q Consensus 93 p~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~-d~~~~v-R~~a~~~l~~~~~~~~~~~~~~l~~ 170 (318)
.++..|..++..+.|..|+..+......+.++. ++.+..++. .++|.+ -..|...+|.++..
T Consensus 64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~-----l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~----------- 127 (232)
T 3jxy_A 64 IIIRELWDLPEREFQAAALDIMQKYKKHINETH-----IPFLEELIVTKSWWDSVDSIVPTFLGDIFLK----------- 127 (232)
T ss_dssp HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGGG-----HHHHHHHHTSSCCHHHHHHHTTTHHHHHHHH-----------
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHHH-----HHHHHHHHccCCChHHHHHhhHHHHHHHHHH-----------
Confidence 466777777777888888877765544454432 233334433 345542 33333333322111
Q ss_pred HHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCCcH
Q psy14015 171 HFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQD 250 (318)
Q Consensus 171 ~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~~~ 250 (318)
..+.+.+.+...+.|++.-+|+.++..+-.. .. +.....+++.+..++.|+++
T Consensus 128 -----------------------~p~~~~~~l~~W~~s~~~w~rR~ai~~~l~~--~~--~~d~~~~~~~i~~~~~d~~~ 180 (232)
T 3jxy_A 128 -----------------------HPELISAYIPKWIASDNIWLQRAAILFQLKY--KQ--KMDEELLFWIIGQLHSSKEF 180 (232)
T ss_dssp -----------------------CGGGGGGTHHHHHHSSCHHHHHHHHHTTTTC--GG--GCCHHHHHHHHHHHTTCCCH
T ss_pred -----------------------CHHHHHHHHHHHhcCCchHHHHHHHHHHHHH--Hh--CCCHHHHHHHHHHhcCCHHH
Confidence 0012345667777888866666555544212 11 11234677788889999999
Q ss_pred HHHHHHHHHHHHHHhh
Q psy14015 251 SVRLLAVEACVSIASL 266 (318)
Q Consensus 251 ~VR~aa~~~l~~l~~~ 266 (318)
.||++...+|..+++.
T Consensus 181 yV~kAvgW~Lr~~~k~ 196 (232)
T 3jxy_A 181 FIQKAIGWVLREYAKT 196 (232)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999998888854
No 121
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=92.26 E-value=0.48 Score=40.00 Aligned_cols=127 Identities=11% Similarity=0.072 Sum_probs=76.8
Q ss_pred HHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcC-ChHH-HHHHH-HHHHcccccCcCcccchhccchHH
Q psy14015 19 IDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIY-DEDE-VLLAL-AEQLGTFTPNVGGPEYVHCLLPPL 95 (318)
Q Consensus 19 ~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~-D~~~-VR~~a-a~~L~~l~~~~~~~~~~~~llp~l 95 (318)
.+..+++..+.|..++..+....+.+.++ .++.+..++. .+.| +-... ...++.+.. .....+.+.+
T Consensus 67 ~~L~~~~~~E~r~~ai~~l~~~~k~~~~~-----~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~-----~~p~~~~~~l 136 (232)
T 3jxy_A 67 RELWDLPEREFQAAALDIMQKYKKHINET-----HIPFLEELIVTKSWWDSVDSIVPTFLGDIFL-----KHPELISAYI 136 (232)
T ss_dssp HHHHTSSBHHHHHHHHHHHHHTGGGCCGG-----GHHHHHHHHTSSCCHHHHHHHTTTHHHHHHH-----HCGGGGGGTH
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHccCCChHHHHHhhHHHHHHHHH-----HCHHHHHHHH
Confidence 34446666677877777776432223332 3344444443 3556 43443 344444432 1223367888
Q ss_pred hhhccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccc
Q psy14015 96 ESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPR 159 (318)
Q Consensus 96 ~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~ 159 (318)
..++.|++..+|..|+..+...... .+ ...+.+++..+.+|+.+.||++.+..|..+..+
T Consensus 137 ~~W~~s~~~w~rR~ai~~~l~~~~~---~d-~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~ 196 (232)
T 3jxy_A 137 PKWIASDNIWLQRAAILFQLKYKQK---MD-EELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT 196 (232)
T ss_dssp HHHHHSSCHHHHHHHHHTTTTCGGG---CC-HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHhcCCchHHHHHHHHHHHHHHhC---CC-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999988665332211 11 224667777888999999999998887765443
No 122
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=91.79 E-value=4.6 Score=33.00 Aligned_cols=71 Identities=13% Similarity=0.149 Sum_probs=54.2
Q ss_pred HHHHHHHHhhHHHHHHhch--hhhHhhHHHHHHHhhcCCcH--HHHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccc
Q psy14015 212 MVRRAAAGKLGELAKVVEV--DYLKTDIIPMFVNLAQDEQD--SVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQ 286 (318)
Q Consensus 212 ~VR~~aa~~L~~l~~~~~~--~~~~~~llp~l~~ll~D~~~--~VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D 286 (318)
.+|..||..++.++..+|. ......+.-.+.+.+.||.. ..+-.|+ ..+. .+|++.+...++|.+....++
T Consensus 105 ~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi---~GL~-~lG~~~vr~~llP~l~~~~~~ 179 (196)
T 4atg_A 105 DVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGAL---YCLS-ILSKNVVNTVIREHAEEYKRT 179 (196)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHH---HHHH-HHCHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHH---HHHH-HhHHHHHHHhhhcCHHHHHHH
Confidence 8999999999999999986 34566788888888888854 3344333 3333 567788888899999988887
No 123
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=91.07 E-value=1.8 Score=44.91 Aligned_cols=131 Identities=16% Similarity=0.210 Sum_probs=74.4
Q ss_pred HHHHHhcC----ccHHHHHHHHHhHHHHHHh-hCh-----HhHhhchhhhhhhhcCC-hHHHHHHHHHHHcccccCcCcc
Q psy14015 17 VLIDELKN----EDVQLRLNSIKKLSTIALA-LGQ-----ERTRGELIPFLTETIYD-EDEVLLALAEQLGTFTPNVGGP 85 (318)
Q Consensus 17 ~l~~~l~~----~~~~~R~~~~~~L~~ia~~-lg~-----~~~~~~llp~l~~l~~D-~~~VR~~aa~~L~~l~~~~~~~ 85 (318)
.+.+.+++ .++.+|..++-.++.+... +.. ......+...+.+.++. +.+.+..+.++|++++. +
T Consensus 395 ~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~----p 470 (1056)
T 1lsh_A 395 YARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----P 470 (1056)
T ss_dssp HHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----G
T ss_pred HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC----h
Confidence 34445544 3466788888888888643 221 11233344444433333 33367788888988753 3
Q ss_pred cchhccchHHhhh---ccCchhHHHHHHHHHHHHHHhhCChhHHhhhHHHHHHHhhcCCCchhhhhhhhhhh
Q psy14015 86 EYVHCLLPPLESL---ATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFS 154 (318)
Q Consensus 86 ~~~~~llp~l~~l---~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~ 154 (318)
.....+.+++... ..+....||.+|+.+|..+.... ++.+.+.+++++.+ .+....+|..|+..+-
T Consensus 471 ~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-p~~v~~il~~i~~n--~~e~~EvRiaA~~~Lm 539 (1056)
T 1lsh_A 471 NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-PRKVQEIVLPIFLN--VAIKSELRIRSCIVFF 539 (1056)
T ss_dssp GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-HHHHHHHHHHHHHC--TTSCHHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc-hHHHHHHHHHHhcC--CCCChHHHHHHHHHHH
Confidence 3444444544332 12223578999999999888543 33344444444432 2235689999977764
No 124
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=90.13 E-value=4.4 Score=32.01 Aligned_cols=76 Identities=11% Similarity=0.034 Sum_probs=59.8
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh----hHhhHHHHHHHhhcC-CcHHHHHHHHHHHHHHHhhCChh
Q psy14015 196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY----LKTDIIPMFVNLAQD-EQDSVRLLAVEACVSIASLLSQS 270 (318)
Q Consensus 196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~----~~~~llp~l~~ll~D-~~~~VR~aa~~~l~~l~~~l~~~ 270 (318)
++.+..+.+.++..++.|...|..-|-.+..++|... ...+++.-+.++++. ++..||..+...+...+..|+.+
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 130 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKD 130 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 5677888888899999999999999999999988632 123455555566654 67799999999999999988765
Q ss_pred h
Q psy14015 271 D 271 (318)
Q Consensus 271 ~ 271 (318)
.
T Consensus 131 ~ 131 (163)
T 1x5b_A 131 P 131 (163)
T ss_dssp S
T ss_pred c
Confidence 4
No 125
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=89.29 E-value=3.9 Score=31.45 Aligned_cols=76 Identities=12% Similarity=0.038 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhhh----HhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCChhh
Q psy14015 196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYL----KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD 271 (318)
Q Consensus 196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~~----~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~~~ 271 (318)
++.+..+.+.++..++.+-..|..-|-.+..++|.... ..+++.-+..+++.++..||..+...+...+..|+.+.
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~~ 120 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKNDP 120 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 56788888888999999999999999999898886421 23466666666667888999999999999998886653
No 126
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=88.69 E-value=2.5 Score=32.27 Aligned_cols=84 Identities=11% Similarity=0.041 Sum_probs=59.7
Q ss_pred hChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCcccchhccchHHhhhccCchhHHHHHHHHHHHHHHhhCC
Q psy14015 44 LGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHS 122 (318)
Q Consensus 44 lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~ 122 (318)
+|.+ ....++|.|...++|-+| +...++..|..+. +.+.|.+...+..+|+...-. .+..+...++
T Consensus 24 ~~~~-~i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~~---------~~l~p~I~~vl~s~D~~W~yw---il~~lv~~~~ 90 (134)
T 3ut4_A 24 LIDN-EIEPIIFDLLKWLQDYNWPIAKDILPVVVLHQ---------SIAMPHILTILQGNDIMWKYW---VIKLMIPYLI 90 (134)
T ss_dssp CCHH-HHHHHHHHHHGGGSCTTSTTHHHHHHHHHHTH---------HHHHHHHHHHHHSSCHHHHHH---HHHHHGGGCC
T ss_pred CCHH-HHHHHHHHHHHHHhcCCCccHHHHHHHHHHcc---------HhhHHHHHHHHHcCChHHHHH---HHHHHHHcCC
Confidence 4555 456788999999999998 9999999988652 346777777766666655443 3445666776
Q ss_pred hhHHhhhHHHHHHHhhcCC
Q psy14015 123 PHDLEAHFVPLVQRLASGD 141 (318)
Q Consensus 123 ~~~~~~~ilp~~~~l~~d~ 141 (318)
.+. ...+.|-+.++++.+
T Consensus 91 ~~~-~~~l~~eL~rl~~~p 108 (134)
T 3ut4_A 91 YPN-KQLVKSELERLSSLE 108 (134)
T ss_dssp HHH-HHHHHHHHHHHHTCC
T ss_pred HHH-HHHHHHHHHHHHhCC
Confidence 653 444888889998876
No 127
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=85.42 E-value=6.8 Score=32.69 Aligned_cols=78 Identities=12% Similarity=0.052 Sum_probs=60.3
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh----hHhhHHHHHHHhhc-CCcHHHHHHHHHHHHHHHhhCCh
Q psy14015 195 KAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY----LKTDIIPMFVNLAQ-DEQDSVRLLAVEACVSIASLLSQ 269 (318)
Q Consensus 195 ~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~----~~~~llp~l~~ll~-D~~~~VR~aa~~~l~~l~~~l~~ 269 (318)
-++.+..+.+-++..++.|...|..-|..+..+.|... ...+++..+..+++ .+...||..++..+...+..|..
T Consensus 43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN 122 (226)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 36778889888999999999999999999999888631 22345555555543 46779999999999999998866
Q ss_pred hhh
Q psy14015 270 SDV 272 (318)
Q Consensus 270 ~~~ 272 (318)
+..
T Consensus 123 ~~~ 125 (226)
T 3zyq_A 123 EPK 125 (226)
T ss_dssp CGG
T ss_pred Ccc
Confidence 543
No 128
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=83.11 E-value=6.6 Score=33.48 Aligned_cols=72 Identities=15% Similarity=0.160 Sum_probs=55.4
Q ss_pred cchhccchHHhhhccCc-hhHHHHHHHHHHHHHHhhCChhH----HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhc
Q psy14015 86 EYVHCLLPPLESLATVE-ETVVRDKAVESLRLISAQHSPHD----LEAHFVPLVQRLASGDWFTSRTSACGLFSVCY 157 (318)
Q Consensus 86 ~~~~~llp~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~~~----~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~ 157 (318)
+..-+++|++..-.++. .+..|-+++..++.+++.-.++- ....++|...+..+-.+.-.+..|..++.+++
T Consensus 97 ~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL 173 (268)
T 2fv2_A 97 HIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL 173 (268)
T ss_dssp TGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred cchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence 45567889988876655 48899999999999997654442 22248999998888788888888888888775
No 129
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=83.02 E-value=2.7 Score=32.05 Aligned_cols=93 Identities=11% Similarity=0.080 Sum_probs=60.3
Q ss_pred Cch-HHHHHHHhcCccHHHHHHHHHhHHHHHHhhChHhHhhchhhhhhhhcCC--hHHHHHHHHHHHcccccCcCcccch
Q psy14015 12 LYP-IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYD--EDEVLLALAEQLGTFTPNVGGPEYV 88 (318)
Q Consensus 12 l~~-i~~l~~~l~~~~~~~R~~~~~~L~~ia~~lg~~~~~~~llp~l~~l~~D--~~~VR~~aa~~L~~l~~~~~~~~~~ 88 (318)
+.| ++.+++.|||-||.+...++..|... .+.++|.+.+.+.. +.|.--.+....+++- ....
T Consensus 29 i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~---------~~~l~p~I~~vl~s~D~~W~ywil~~lv~~~~-----~~~~ 94 (134)
T 3ut4_A 29 IEPIIFDLLKWLQDYNWPIAKDILPVVVLH---------QSIAMPHILTILQGNDIMWKYWVIKLMIPYLI-----YPNK 94 (134)
T ss_dssp HHHHHHHHHGGGSCTTSTTHHHHHHHHHHT---------HHHHHHHHHHHHHSSCHHHHHHHHHHHGGGCC-----HHHH
T ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHc---------cHhhHHHHHHHHHcCChHHHHHHHHHHHHcCC-----HHHH
Confidence 444 78899999999999988888888773 23577888776643 3343222222223331 2345
Q ss_pred hccchHHhhhccCc-----hhHHHHHHHHHHHHHH
Q psy14015 89 HCLLPPLESLATVE-----ETVVRDKAVESLRLIS 118 (318)
Q Consensus 89 ~~llp~l~~l~~d~-----~~~VR~~a~~~l~~l~ 118 (318)
..+.|.+.+++..+ .++|.+.|-+.|..+.
T Consensus 95 ~~l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~~ 129 (134)
T 3ut4_A 95 QLVKSELERLSSLEIINEDIREIVNLSKDYLHFYY 129 (134)
T ss_dssp HHHHHHHHHHHTCCCSSGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHc
Confidence 66778888887653 4677777777776653
No 130
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=79.52 E-value=20 Score=27.79 Aligned_cols=75 Identities=12% Similarity=0.021 Sum_probs=61.7
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh----hHhhHHHHHHHhhcC------CcHHHHHHHHHHHHHHHh
Q psy14015 196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY----LKTDIIPMFVNLAQD------EQDSVRLLAVEACVSIAS 265 (318)
Q Consensus 196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~----~~~~llp~l~~ll~D------~~~~VR~aa~~~l~~l~~ 265 (318)
++.+..+.+-+++.++.|-..|..-|-.+..++|... ...+++.-+.+++++ +...||..+...+...+.
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 5678888888899999999999999999999988642 234567777788765 578999999999999999
Q ss_pred hCChh
Q psy14015 266 LLSQS 270 (318)
Q Consensus 266 ~l~~~ 270 (318)
.|+.+
T Consensus 127 ~f~~~ 131 (149)
T 3g2s_A 127 GLPEE 131 (149)
T ss_dssp HCTTC
T ss_pred HhCCC
Confidence 88654
No 131
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=78.35 E-value=19 Score=27.47 Aligned_cols=77 Identities=14% Similarity=0.125 Sum_probs=47.5
Q ss_pred HHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcCC
Q psy14015 130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDD 209 (318)
Q Consensus 130 ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~ 209 (318)
.+..+.+-++..+..+...|..++..+....+..+..++ .+..++.-+.+++...
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~ev-------------------------as~~Fl~el~~l~~~~ 97 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEV-------------------------CSRDFASEVSNVLNKG 97 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHH-------------------------SSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHH-------------------------hhHHHHHHHHHHhccC
Confidence 344454445556666666666666666555554433332 2234445555555557
Q ss_pred CHHHHHHHHHhhHHHHHHhchh
Q psy14015 210 TPMVRRAAAGKLGELAKVVEVD 231 (318)
Q Consensus 210 ~~~VR~~aa~~L~~l~~~~~~~ 231 (318)
++.||.-+...+...+..++.+
T Consensus 98 ~~~Vk~kil~li~~W~~~f~~~ 119 (140)
T 3ldz_A 98 HPKVCEKLKALMVEWTDEFKND 119 (140)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHhCCC
Confidence 7899999999999998877654
No 132
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=74.32 E-value=29 Score=27.01 Aligned_cols=75 Identities=12% Similarity=0.021 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhc-CCCHHHHHHHHHhhHHHHHHhchhh----hHhhHHHH-HHHhh---cCCcHHHHHHHHHHHHHHHhh
Q psy14015 196 AELRSHFRNLCQ-DDTPMVRRAAAGKLGELAKVVEVDY----LKTDIIPM-FVNLA---QDEQDSVRLLAVEACVSIASL 266 (318)
Q Consensus 196 ~~ll~~l~~l~~-D~~~~VR~~aa~~L~~l~~~~~~~~----~~~~llp~-l~~ll---~D~~~~VR~aa~~~l~~l~~~ 266 (318)
++.+..+.+-++ ..++.|...|..-|-.+..++|... ...+++.- +.+++ .++...||..+...+...+..
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 566778888887 5899999999999999999988642 12335554 45555 356679999999999999988
Q ss_pred CChh
Q psy14015 267 LSQS 270 (318)
Q Consensus 267 l~~~ 270 (318)
|+..
T Consensus 132 f~~~ 135 (157)
T 1elk_A 132 FRSS 135 (157)
T ss_dssp HTTC
T ss_pred cCCC
Confidence 8643
No 133
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=74.22 E-value=20 Score=28.13 Aligned_cols=77 Identities=12% Similarity=0.150 Sum_probs=50.4
Q ss_pred HHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcC-
Q psy14015 130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQD- 208 (318)
Q Consensus 130 ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D- 208 (318)
.+-.+++.++..+..+...|..++..++...+..+..++ ..+.++.-+.+++..
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~ev-------------------------as~~Fl~el~~l~~~~ 107 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEV-------------------------CSRDFATEVRAVIKNK 107 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHH-------------------------TSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHH-------------------------hhHHHHHHHHHHHccC
Confidence 344455555667777888888887777666665544443 224455555555554
Q ss_pred CCHHHHHHHHHhhHHHHHHhchh
Q psy14015 209 DTPMVRRAAAGKLGELAKVVEVD 231 (318)
Q Consensus 209 ~~~~VR~~aa~~L~~l~~~~~~~ 231 (318)
.++.||.-+...+-..+..++.+
T Consensus 108 ~~~~Vk~kil~li~~W~~~f~~~ 130 (163)
T 1x5b_A 108 AHPKVCEKLKSLMVEWSEEFQKD 130 (163)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHHHHHHHHhcCC
Confidence 56899999999888888877643
No 134
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=72.04 E-value=35 Score=28.03 Aligned_cols=75 Identities=13% Similarity=0.119 Sum_probs=57.0
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh----hHhhHHHHHHHhhc-CCcHHHHHHHHHHHHHHHhhCChh
Q psy14015 196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY----LKTDIIPMFVNLAQ-DEQDSVRLLAVEACVSIASLLSQS 270 (318)
Q Consensus 196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~----~~~~llp~l~~ll~-D~~~~VR~aa~~~l~~l~~~l~~~ 270 (318)
++.+..+.+-++..++.|...|..-|..+..+.|... ...+++.-+..+++ .+...||..+.+.+...+..|+..
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 120 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSS 120 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccc
Confidence 5677888888899999999999988888888877532 12235554555544 457899999999999999888654
No 135
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=71.98 E-value=32 Score=26.50 Aligned_cols=75 Identities=9% Similarity=0.005 Sum_probs=61.6
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchhh----hHhhHHHHHHHhhcC------CcHHHHHHHHHHHHHHHh
Q psy14015 196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY----LKTDIIPMFVNLAQD------EQDSVRLLAVEACVSIAS 265 (318)
Q Consensus 196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~~----~~~~llp~l~~ll~D------~~~~VR~aa~~~l~~l~~ 265 (318)
++.+..+.+-++..++.|-..|..-|-.+..++|... ...+++.-+.+++.+ +...||..+...+...+.
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 5667888888899999999999999999999988642 234577777888764 478999999999999999
Q ss_pred hCChh
Q psy14015 266 LLSQS 270 (318)
Q Consensus 266 ~l~~~ 270 (318)
.|+..
T Consensus 117 ~f~~~ 121 (148)
T 1mhq_A 117 WFPED 121 (148)
T ss_dssp HCTTC
T ss_pred HcCCC
Confidence 88654
No 136
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=70.69 E-value=37 Score=26.79 Aligned_cols=76 Identities=12% Similarity=-0.001 Sum_probs=60.4
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh----hhHhhHHHHHHHhhcC------CcHHHHHHHHHHHHHHHh
Q psy14015 196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD----YLKTDIIPMFVNLAQD------EQDSVRLLAVEACVSIAS 265 (318)
Q Consensus 196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~----~~~~~llp~l~~ll~D------~~~~VR~aa~~~l~~l~~ 265 (318)
++.+..+.+.++..++.|...|..-|-.+..++|.. ....+++.-+.++++. ....||..+.+.+...+.
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 566788888889999999999999999999988853 2233466667777752 467999999999999999
Q ss_pred hCChhh
Q psy14015 266 LLSQSD 271 (318)
Q Consensus 266 ~l~~~~ 271 (318)
.|+...
T Consensus 129 ~f~~~~ 134 (171)
T 1juq_A 129 ALPEEA 134 (171)
T ss_dssp HCTTCH
T ss_pred HcCCCc
Confidence 997643
No 137
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=70.62 E-value=34 Score=26.36 Aligned_cols=76 Identities=9% Similarity=0.014 Sum_probs=52.6
Q ss_pred HHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcC-
Q psy14015 130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQD- 208 (318)
Q Consensus 130 ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D- 208 (318)
.+..+.+-+++.++.+-..|..++..+....+..+..++ .++.++.-+.+++.+
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~ei-------------------------as~~Fl~eL~kl~~~k 103 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEV-------------------------GKFRFLNELIKVVSPK 103 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHH-------------------------TSHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHH-------------------------hhHHHHHHHHHHHccc
Confidence 444555555667777777777777766666665544443 335666777777765
Q ss_pred -----CCHHHHHHHHHhhHHHHHHhch
Q psy14015 209 -----DTPMVRRAAAGKLGELAKVVEV 230 (318)
Q Consensus 209 -----~~~~VR~~aa~~L~~l~~~~~~ 230 (318)
....||.-+...+...+..|+.
T Consensus 104 ~~~~~~~~~Vk~kil~li~~W~~~f~~ 130 (149)
T 3g2s_A 104 YLGSRTSEKVKNKILELLYSWTVGLPE 130 (149)
T ss_dssp TTGGGSCHHHHHHHHHHHHHHHHHCTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 4689999999999999987754
No 138
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=62.41 E-value=55 Score=25.76 Aligned_cols=76 Identities=11% Similarity=0.035 Sum_probs=51.6
Q ss_pred HHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcC-
Q psy14015 130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQD- 208 (318)
Q Consensus 130 ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D- 208 (318)
.+-.+++.++..+..+...|..++..++...+..+..++ ..+.++.-+.+++..
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~ev-------------------------as~~Fl~eL~kl~~~k 105 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEV-------------------------GKFRFLNELIKVVSPK 105 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHH-------------------------TSHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHH-------------------------hhHHHHHHHHHHhccc
Confidence 344455555667778888888877766665554444333 335566667777652
Q ss_pred -----CCHHHHHHHHHhhHHHHHHhch
Q psy14015 209 -----DTPMVRRAAAGKLGELAKVVEV 230 (318)
Q Consensus 209 -----~~~~VR~~aa~~L~~l~~~~~~ 230 (318)
....||.-+...+-..+..++.
T Consensus 106 ~~~~~~~~~Vk~kil~li~~W~~~f~~ 132 (171)
T 1juq_A 106 YLGDRVSEKVKTKVIELLYSWTMALPE 132 (171)
T ss_dssp CCCTTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 3589999999999999987764
No 139
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=62.20 E-value=84 Score=27.78 Aligned_cols=125 Identities=11% Similarity=0.104 Sum_probs=77.2
Q ss_pred CchhHHHHHHHHHHHHHHhhCCh---hHH---hhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHh
Q psy14015 101 VEETVVRDKAVESLRLISAQHSP---HDL---EAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRN 174 (318)
Q Consensus 101 d~~~~VR~~a~~~l~~l~~~~~~---~~~---~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~ 174 (318)
.++=+|-.-|..++..+...... +.. .+.+...+.+|++++++-.|.-+..+||.++-.-+.. .+ ...
T Consensus 175 ~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~---~v---M~~ 248 (341)
T 1upk_A 175 MSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNF---TI---MTK 248 (341)
T ss_dssp CSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGH---HH---HHH
T ss_pred CCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHH---HH---HHH
Confidence 34445655566666666554321 111 1125556677899999999999999999875332211 00 011
Q ss_pred hccCCCcccccchhhcCccchHHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhchh-h-------hHhhHHHHHHHhhc
Q psy14015 175 LCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD-Y-------LKTDIIPMFVNLAQ 246 (318)
Q Consensus 175 l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~~-~-------~~~~llp~l~~ll~ 246 (318)
. ....+-+..+..++.|++..++..|..-|-.+..+-... . -.+.++-++..+..
T Consensus 249 Y-----------------is~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~ 311 (341)
T 1upk_A 249 Y-----------------ISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQN 311 (341)
T ss_dssp H-----------------TTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTT
T ss_pred H-----------------hCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCCC
Confidence 1 233567889999999999999999988888877643211 0 13456666666665
Q ss_pred CC
Q psy14015 247 DE 248 (318)
Q Consensus 247 D~ 248 (318)
|.
T Consensus 312 d~ 313 (341)
T 1upk_A 312 DR 313 (341)
T ss_dssp TC
T ss_pred CC
Confidence 55
No 140
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=60.99 E-value=21 Score=29.03 Aligned_cols=94 Identities=11% Similarity=0.059 Sum_probs=57.6
Q ss_pred hHHhhhHHHHHHHhhcCCC---chhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHH
Q psy14015 124 HDLEAHFVPLVQRLASGDW---FTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRS 200 (318)
Q Consensus 124 ~~~~~~ilp~~~~l~~d~~---~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~ 200 (318)
+-+...++|.+...+=... ...|..|+.+++.++.+.+... +..+..+..
T Consensus 82 epYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y---------------------------~~L~~RI~~ 134 (196)
T 4atg_A 82 DPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSY---------------------------KTLAPRVLK 134 (196)
T ss_dssp GGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTS---------------------------TTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccC---------------------------chHHHHHHH
Confidence 5556667777765332211 1567777777665554433210 124566778
Q ss_pred HHHHhhcCCC--HHHHHHHHHhhHHHHHHhchhhhHhhHHHHHHHhhcCC
Q psy14015 201 HFRNLCQDDT--PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDE 248 (318)
Q Consensus 201 ~l~~l~~D~~--~~VR~~aa~~L~~l~~~~~~~~~~~~llp~l~~ll~D~ 248 (318)
.+.+.+.|++ ......|+..|..++ ++.+..-++|-+....++-
T Consensus 135 tl~k~l~dp~~~l~t~YGAi~GL~~lG----~~~vr~~llP~l~~~~~~~ 180 (196)
T 4atg_A 135 TLKGVWMDPNRSEDSQYGALYCLSILS----KNVVNTVIREHAEEYKRTI 180 (196)
T ss_dssp HHHHHHTCTTSCHHHHHHHHHHHHHHC----HHHHHTHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHHhH----HHHHHHhhhcCHHHHHHHH
Confidence 8888888864 667777777777664 4656666889888777543
No 141
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=60.34 E-value=55 Score=25.08 Aligned_cols=76 Identities=11% Similarity=0.005 Sum_probs=52.0
Q ss_pred HHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhcC-
Q psy14015 130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQD- 208 (318)
Q Consensus 130 ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~D- 208 (318)
.+-.+.+-++..+..+...|..++..++...+..+..++ ..+.++.-+.+++.+
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~ev-------------------------as~~Fl~eL~kl~~~k 93 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEV-------------------------AKFRFLNELIKVLSPK 93 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHH-------------------------TSHHHHHHHHHTTCCS
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHH-------------------------hhHHHHHHHHHHHccc
Confidence 334455555667777777777777777666665544443 335667777777764
Q ss_pred -----CCHHHHHHHHHhhHHHHHHhch
Q psy14015 209 -----DTPMVRRAAAGKLGELAKVVEV 230 (318)
Q Consensus 209 -----~~~~VR~~aa~~L~~l~~~~~~ 230 (318)
....||.-+...+-..+..++.
T Consensus 94 ~~~~~~~~~Vk~kil~li~~W~~~f~~ 120 (148)
T 1mhq_A 94 YLGSWATGKVKGRVIEILFSWTVWFPE 120 (148)
T ss_dssp TTSCCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 3689999999999888887754
No 142
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=59.09 E-value=12 Score=31.24 Aligned_cols=75 Identities=3% Similarity=-0.020 Sum_probs=51.7
Q ss_pred cchHHhhhccCchhHHHHHHHHHHH-HHHhhCC---hhHHhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchH
Q psy14015 91 LLPPLESLATVEETVVRDKAVESLR-LISAQHS---PHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVK 165 (318)
Q Consensus 91 llp~l~~l~~d~~~~VR~~a~~~l~-~l~~~~~---~~~~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~ 165 (318)
..+.+..++.|++..+|..|..+-. .++.... .+.....++.++...++|+.+.+|++....|..+..+-.+.++
T Consensus 109 ~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~~~~ 187 (235)
T 1t06_A 109 AQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVPLHE 187 (235)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHHHHH
Confidence 4567888889999889888887322 1122221 2334455888888888999999999998888877665444333
No 143
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=56.00 E-value=36 Score=28.33 Aligned_cols=70 Identities=7% Similarity=-0.004 Sum_probs=48.9
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHhhH-HHHHHhc---hhhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhC
Q psy14015 198 LRSHFRNLCQDDTPMVRRAAAGKLG-ELAKVVE---VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLL 267 (318)
Q Consensus 198 ll~~l~~l~~D~~~~VR~~aa~~L~-~l~~~~~---~~~~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l 267 (318)
..+.+...+.|++.-+|+++..+-+ -++.... .+.....++......+.|+.+.||.+...+|..++...
T Consensus 109 ~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~ 182 (235)
T 1t06_A 109 AQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISY 182 (235)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhC
Confidence 4566777888888666666666222 1122111 22345778899999999999999999999999988653
No 144
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=55.73 E-value=1.1e+02 Score=27.05 Aligned_cols=156 Identities=13% Similarity=0.019 Sum_probs=87.0
Q ss_pred HHHHHHHhcCccHHHHHHHHHhHHHHHH---hhChHhHhhchhhhhhhhcCChHH-HHHHHHHHHcccccCcCc-ccc--
Q psy14015 15 IAVLIDELKNEDVQLRLNSIKKLSTIAL---ALGQERTRGELIPFLTETIYDEDE-VLLALAEQLGTFTPNVGG-PEY-- 87 (318)
Q Consensus 15 i~~l~~~l~~~~~~~R~~~~~~L~~ia~---~lg~~~~~~~llp~l~~l~~D~~~-VR~~aa~~L~~l~~~~~~-~~~-- 87 (318)
...+++.|++.+...++.++..|..+-. .+-.|.....=+..|.....+.+. ...-+.++|..+-..+.+ +..
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs 199 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA 199 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence 4567788888888889999999998431 122332222324455555555443 555555666655432111 011
Q ss_pred hhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh--HHhhh-----------HHHHHHHhhc---CCCchhhhhhhh
Q psy14015 88 VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH--DLEAH-----------FVPLVQRLAS---GDWFTSRTSACG 151 (318)
Q Consensus 88 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~-----------ilp~~~~l~~---d~~~~vR~~a~~ 151 (318)
....+..+..++...+..|-..|++.|..++.+.+.. .+... .++.+.++++ +.+..+...|..
T Consensus 200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt 279 (339)
T 3dad_A 200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT 279 (339)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence 1223344455555677888889999999998876421 11111 1233444454 345667777777
Q ss_pred hhhhhccccCcc-hHHHHHH
Q psy14015 152 LFSVCYPRVTAG-VKAELRS 170 (318)
Q Consensus 152 ~l~~~~~~~~~~-~~~~l~~ 170 (318)
++.+++...++. .++++.+
T Consensus 280 LIN~lL~~apd~d~~~di~d 299 (339)
T 3dad_A 280 LINKTLAALPDQDSFYDVTD 299 (339)
T ss_dssp HHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHhcCCChhHHHHHHH
Confidence 777666655532 2444433
No 145
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=53.53 E-value=52 Score=27.19 Aligned_cols=77 Identities=10% Similarity=0.046 Sum_probs=48.4
Q ss_pred HHHHHHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhc-C
Q psy14015 130 FVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ-D 208 (318)
Q Consensus 130 ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~-D 208 (318)
.+..+.+-++..+..+...|..++..++...+..+..++ ..++++..+.+++. .
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~ei-------------------------as~~fl~~l~~l~~~~ 100 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEV-------------------------ANKQTMEELKDLLKRQ 100 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHH-------------------------SSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhh-------------------------ccHHHHHHHHHHhccC
Confidence 444455555667777777777777666655554443333 22444455555544 3
Q ss_pred CCHHHHHHHHHhhHHHHHHhchh
Q psy14015 209 DTPMVRRAAAGKLGELAKVVEVD 231 (318)
Q Consensus 209 ~~~~VR~~aa~~L~~l~~~~~~~ 231 (318)
....||.-+...+...+..+..+
T Consensus 101 ~~~~Vk~kil~li~~W~~~f~~~ 123 (226)
T 3zyq_A 101 VEVNVRNKILYLIQAWAHAFRNE 123 (226)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHHHHHHHHhCCC
Confidence 56789999999888888877543
No 146
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=52.30 E-value=79 Score=24.40 Aligned_cols=76 Identities=8% Similarity=0.085 Sum_probs=48.6
Q ss_pred HHHHHHHhhc-CCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHH-HHHhhc
Q psy14015 130 FVPLVQRLAS-GDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSH-FRNLCQ 207 (318)
Q Consensus 130 ilp~~~~l~~-d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~-l~~l~~ 207 (318)
.+-.+.+-++ .++..+...|..++..++...+..+..++ ..+.++.- +.++..
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~ev-------------------------a~~~fl~e~Lvk~~~ 108 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLV-------------------------ASQDFVESVLVRTIL 108 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-------------------------TSHHHHHHHTHHHHS
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHH-------------------------hhHHHHHHHHHHHhc
Confidence 3334444444 56777777888887777666665544443 22445554 556553
Q ss_pred ---CCCHHHHHHHHHhhHHHHHHhch
Q psy14015 208 ---DDTPMVRRAAAGKLGELAKVVEV 230 (318)
Q Consensus 208 ---D~~~~VR~~aa~~L~~l~~~~~~ 230 (318)
++...||.-+...+-..+..++.
T Consensus 109 ~k~~~~~~Vk~kil~li~~W~~~f~~ 134 (157)
T 1elk_A 109 PKNNPPTIVHDKVLNLIQSWADAFRS 134 (157)
T ss_dssp TTTCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHcCC
Confidence 45578999999999988887753
No 147
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=44.80 E-value=59 Score=22.86 Aligned_cols=49 Identities=10% Similarity=0.066 Sum_probs=22.1
Q ss_pred HHhhhccCch--hHHHHHHHHHHHHHHhh-CChhHHhhhHHHHHHHhhcCCC
Q psy14015 94 PLESLATVEE--TVVRDKAVESLRLISAQ-HSPHDLEAHFVPLVQRLASGDW 142 (318)
Q Consensus 94 ~l~~l~~d~~--~~VR~~a~~~l~~l~~~-~~~~~~~~~ilp~~~~l~~d~~ 142 (318)
+|.++..|+. ..||.+|-++...+.+. .+........+..+.+..+||+
T Consensus 22 ~L~~I~~D~sVPRNIRraA~ea~~~L~~e~~~~~vRAAtAIs~LDeISnDPN 73 (94)
T 2qzg_A 22 MLEEIVEDTTVPRNIRAAADNAKNALHNEEQELIVRSATAIQYLDDISEDPN 73 (94)
T ss_dssp HHHHHHTCTTSCHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhhcCCC
Confidence 3444444432 34555555544444322 1222222334555566667765
No 148
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=42.50 E-value=96 Score=27.19 Aligned_cols=35 Identities=9% Similarity=0.130 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHhhCChhhhhHhhHHHHHHhccc
Q psy14015 252 VRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQ 286 (318)
Q Consensus 252 VR~aa~~~l~~l~~~l~~~~~~~~l~p~l~~ll~D 286 (318)
.|...+..+..-...+....+..+++.-+.+++..
T Consensus 311 ~r~~i~~~i~~~~~~L~~~~~g~~i~~kl~~~~~~ 345 (351)
T 3gvo_A 311 QRKIIMHKIRPHITTLRKYTYGKHILAKLEKYYLK 345 (351)
T ss_dssp HHHHHHHHHGGGHHHHTTSTTTHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhh
Confidence 45555554444333333333444555555555443
No 149
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=40.51 E-value=2.2e+02 Score=26.16 Aligned_cols=184 Identities=16% Similarity=0.108 Sum_probs=93.0
Q ss_pred cchHHhhhccCchhHHHHHHHHHHHHHHhhCCh--hHHhhhHHHHHHHhhcCCCchhh-hhhhhhhhhhccccCcc----
Q psy14015 91 LLPPLESLATVEETVVRDKAVESLRLISAQHSP--HDLEAHFVPLVQRLASGDWFTSR-TSACGLFSVCYPRVTAG---- 163 (318)
Q Consensus 91 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~~~~~~ilp~~~~l~~d~~~~vR-~~a~~~l~~~~~~~~~~---- 163 (318)
++--|..++..+|+.-|...-..|+.+...+.. ..+...+-.++.++........- ....+++|.++.+++-.
T Consensus 163 Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKee 242 (449)
T 2npp_B 163 FVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEE 242 (449)
T ss_dssp HHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHH
Confidence 444466677888888899888889888877643 22333344444444433221111 13345566776666533
Q ss_pred hHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhc-CCC---HHHH--------------HHHHHhhHHHH
Q psy14015 164 VKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ-DDT---PMVR--------------RAAAGKLGELA 225 (318)
Q Consensus 164 ~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~-D~~---~~VR--------------~~aa~~L~~l~ 225 (318)
++.-+...+-.|.+...-. ....+|..++.++++ |+. +-+| -....-+.++.
T Consensus 243 hk~fl~~vLlPLhk~~~l~----------~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeil 312 (449)
T 2npp_B 243 HKIFLLKVLLPLHKVKSLS----------VYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEIL 312 (449)
T ss_dssp HHHHHHHTTGGGGGSSCGG----------GTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchhH----------HhHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Confidence 3333333333333322111 233444444444432 322 1122 23444555555
Q ss_pred HHhchhhhHhhHHHHHH---HhhcCCcHHHHHHHHHHHHH--HHhhCChhhhhHhhHHHHHHhccc
Q psy14015 226 KVVEVDYLKTDIIPMFV---NLAQDEQDSVRLLAVEACVS--IASLLSQSDVEQLVMPTLRQCSVQ 286 (318)
Q Consensus 226 ~~~~~~~~~~~llp~l~---~ll~D~~~~VR~aa~~~l~~--l~~~l~~~~~~~~l~p~l~~ll~D 286 (318)
..++++.+.....|.|. +.++.++..|=..|+.-..+ +...+ ....+.++|.+...|..
T Consensus 313 e~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li--~~n~~~IlPii~p~L~~ 376 (449)
T 2npp_B 313 DVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLI--SDNAAKILPIMFPSLYR 376 (449)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHH--HTTHHHHHHHHHHHHTS
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHH--HhchhhhHHhhHHHHHH
Confidence 55666655444445444 55678887776666542211 12222 12345688888887654
No 150
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=39.81 E-value=67 Score=29.91 Aligned_cols=69 Identities=12% Similarity=0.144 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhcC----------CCHHHHHHHHHhhHHHHHHhchh-hhHhh--HHHHHHHhhcCCcHHHHHHHHHHHHH
Q psy14015 196 AELRSHFRNLCQD----------DTPMVRRAAAGKLGELAKVVEVD-YLKTD--IIPMFVNLAQDEQDSVRLLAVEACVS 262 (318)
Q Consensus 196 ~~ll~~l~~l~~D----------~~~~VR~~aa~~L~~l~~~~~~~-~~~~~--llp~l~~ll~D~~~~VR~aa~~~l~~ 262 (318)
-+++..+.++++. .++.+=..|+.-+|+++...+.- .+.++ .-..+..|+.++++.||..|..++..
T Consensus 394 ~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQk 473 (480)
T 1ho8_A 394 YKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQA 473 (480)
T ss_dssp GHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3577777777752 35778888899999999876432 11122 45667799999999999999988877
Q ss_pred HH
Q psy14015 263 IA 264 (318)
Q Consensus 263 l~ 264 (318)
+.
T Consensus 474 lm 475 (480)
T 1ho8_A 474 II 475 (480)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 151
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=37.13 E-value=2e+02 Score=24.71 Aligned_cols=12 Identities=25% Similarity=0.080 Sum_probs=6.0
Q ss_pred cchHHhhhccCc
Q psy14015 91 LLPPLESLATVE 102 (318)
Q Consensus 91 llp~l~~l~~d~ 102 (318)
+.|-+..+..|.
T Consensus 120 l~~~~~~L~~d~ 131 (333)
T 3bwt_A 120 LRPYTVQLSKDL 131 (333)
T ss_dssp HGGGHHHHHTST
T ss_pred HHHHHHHHhcCC
Confidence 444455555554
No 152
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=31.24 E-value=1.4e+02 Score=21.00 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=20.7
Q ss_pred hCChhHHhhhHHHHHHHhhcCCC--chhhhhhhhhh
Q psy14015 120 QHSPHDLEAHFVPLVQRLASGDW--FTSRTSACGLF 153 (318)
Q Consensus 120 ~~~~~~~~~~ilp~~~~l~~d~~--~~vR~~a~~~l 153 (318)
.+..+......+..+.+..+|.. ..+|.+|-+..
T Consensus 9 ~~e~e~~ik~~~~~L~~I~~D~sVPRNIRraA~ea~ 44 (94)
T 2qzg_A 9 KLSPADKLKNISSMLEEIVEDTTVPRNIRAAADNAK 44 (94)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 34445555556667778888864 34676664443
No 153
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=29.16 E-value=2e+02 Score=23.30 Aligned_cols=72 Identities=13% Similarity=0.046 Sum_probs=41.6
Q ss_pred HHHhhcCCCchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHHhhc-CCCHH
Q psy14015 134 VQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ-DDTPM 212 (318)
Q Consensus 134 ~~~l~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~l~~-D~~~~ 212 (318)
+.+-++..+..+...|..+|..++...+..+..++ ..+.++.-+.++.. .....
T Consensus 47 l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~ev-------------------------a~~~fl~~l~~l~~~~~~~~ 101 (220)
T 1dvp_A 47 IKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEV-------------------------FTKENCEMFSSFLESTPHEN 101 (220)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHH-------------------------SSHHHHHHHHHHHHHCSCHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHH-------------------------HhHHHHHHHHHHhcCCCcHH
Confidence 44444556666666666666555444443333222 22344555555544 45689
Q ss_pred HHHHHHHhhHHHHHHhch
Q psy14015 213 VRRAAAGKLGELAKVVEV 230 (318)
Q Consensus 213 VR~~aa~~L~~l~~~~~~ 230 (318)
||.-+..-+...+..++.
T Consensus 102 Vk~kil~li~~W~~~f~~ 119 (220)
T 1dvp_A 102 VRQKMLELVQTWAYAFRS 119 (220)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999888888888876653
No 154
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=27.17 E-value=2e+02 Score=27.48 Aligned_cols=85 Identities=15% Similarity=0.068 Sum_probs=58.6
Q ss_pred chHHhhhccCchhHHHHHHHHHHHHHHhhCChhH----------HhhhHHHHHHHhhcCCCchhhhhhhhhhhhhccccC
Q psy14015 92 LPPLESLATVEETVVRDKAVESLRLISAQHSPHD----------LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVT 161 (318)
Q Consensus 92 lp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~----------~~~~ilp~~~~l~~d~~~~vR~~a~~~l~~~~~~~~ 161 (318)
++++..++++++..+-.+++..+..+...+.... .....-.++.-+...++...|..|...++.++..+.
T Consensus 319 l~~l~~lL~~~~~~~~~kGL~Ll~~ll~~l~~~sl~~~~ld~~~~~~~~q~L~~v~~~~P~~~lR~~a~~vl~~~I~~~~ 398 (596)
T 4f52_E 319 MGHIEVFLQRTEESVISKGLELLENSLLRIEDNSLLYQYLEIKSFLTVPQGLVKVMTLCPIETLRKKSLAMLQLYINKLD 398 (596)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHHSSCTTCBCGGGGGSHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHBC
T ss_pred HHHHHHHHcCCchHHHHhHHHHHHHHHHhccCccCChhhhchhhHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHhCC
Confidence 4567788888888888888888777777665421 112122222224566888999999999999999888
Q ss_pred cchHHHHHHHHHhhc
Q psy14015 162 AGVKAELRSHFRNLC 176 (318)
Q Consensus 162 ~~~~~~l~~~~~~l~ 176 (318)
++.|..+...+-+-|
T Consensus 399 ~e~R~~iL~~LL~~~ 413 (596)
T 4f52_E 399 SQGKYTLFRCLLNTS 413 (596)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcC
Confidence 888887755444433
No 155
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=26.81 E-value=76 Score=29.54 Aligned_cols=65 Identities=14% Similarity=0.183 Sum_probs=45.9
Q ss_pred hHHHHHHHhhcC----------CcHHHHHHHHHHHHHHHhhCChh--hhhH-hhHHHHHHhccccccccccCCCCCCchh
Q psy14015 236 DIIPMFVNLAQD----------EQDSVRLLAVEACVSIASLLSQS--DVEQ-LVMPTLRQCSVQIVDHKFCPNNEFHPLE 302 (318)
Q Consensus 236 ~llp~l~~ll~D----------~~~~VR~aa~~~l~~l~~~l~~~--~~~~-~l~p~l~~ll~D~~~~~~~~~~~~~~Vr 302 (318)
+++-.+.++++. .++.+=..|+.-|+++....+.- ...+ ..-..+++++++ ++++||
T Consensus 395 ~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h----------~d~~Vr 464 (480)
T 1ho8_A 395 KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNH----------SDSRVK 464 (480)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSC----------SSHHHH
T ss_pred HHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcC----------CCHHHH
Confidence 356666666652 35667777888888888776442 2222 256788999999 999999
Q ss_pred hHHhhhhh
Q psy14015 303 LHVISATT 310 (318)
Q Consensus 303 ~~~i~~~~ 310 (318)
.++..+.-
T Consensus 465 ~~AL~avQ 472 (480)
T 1ho8_A 465 YEALKATQ 472 (480)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987754
No 156
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=25.96 E-value=2.1e+02 Score=21.93 Aligned_cols=75 Identities=4% Similarity=0.009 Sum_probs=53.1
Q ss_pred HHHHHHHHHhhcC-CCHHHHHHHHHhhHHHHHHhchhh----hHhhHHH-HHHHhhcCC---cHHHHHHHHHHHHHHHhh
Q psy14015 196 AELRSHFRNLCQD-DTPMVRRAAAGKLGELAKVVEVDY----LKTDIIP-MFVNLAQDE---QDSVRLLAVEACVSIASL 266 (318)
Q Consensus 196 ~~ll~~l~~l~~D-~~~~VR~~aa~~L~~l~~~~~~~~----~~~~llp-~l~~ll~D~---~~~VR~aa~~~l~~l~~~ 266 (318)
++.+..+.+-++. +++.+-..|..-|..+..++|... ...+++. .+.++++++ ...||..+...+...+..
T Consensus 52 keA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~ 131 (152)
T 3rru_A 52 KDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQG 131 (152)
T ss_dssp HHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 5667777777764 678877778888888889888642 1223443 345555543 457999999999999998
Q ss_pred CChh
Q psy14015 267 LSQS 270 (318)
Q Consensus 267 l~~~ 270 (318)
|+.+
T Consensus 132 F~~~ 135 (152)
T 3rru_A 132 FPGG 135 (152)
T ss_dssp CSSS
T ss_pred hCCC
Confidence 8654
No 157
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=24.51 E-value=1.1e+02 Score=27.09 Aligned_cols=15 Identities=20% Similarity=-0.084 Sum_probs=7.4
Q ss_pred hhchhhhhhhhcCCh
Q psy14015 50 RGELIPFLTETIYDE 64 (318)
Q Consensus 50 ~~~llp~l~~l~~D~ 64 (318)
.+++.|.+.+++.|.
T Consensus 62 ~~el~~~~~~L~~d~ 76 (369)
T 3k49_A 62 FNEIRDDAIELSNDV 76 (369)
T ss_dssp HHHHGGGHHHHHHST
T ss_pred HHHHHHHHHHHhhCc
Confidence 334555555555553
No 158
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=24.39 E-value=2.3e+02 Score=21.40 Aligned_cols=27 Identities=11% Similarity=0.102 Sum_probs=14.1
Q ss_pred hHHHHHHHhhcCCCchhhhhhhhhhhh
Q psy14015 129 HFVPLVQRLASGDWFTSRTSACGLFSV 155 (318)
Q Consensus 129 ~ilp~~~~l~~d~~~~vR~~a~~~l~~ 155 (318)
.+++.+.+-++++++.+.+-|..+|.-
T Consensus 49 eim~~L~kRL~~k~~~vk~KaL~lL~y 75 (140)
T 1vdy_A 49 EFSEFILKRLDNKSPIVKQKALRLIKY 75 (140)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcceeehHHHHHHH
Confidence 355556555566655554444444433
No 159
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=22.85 E-value=4.2e+02 Score=26.29 Aligned_cols=90 Identities=7% Similarity=0.024 Sum_probs=62.4
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhch---hhhHhhHHHHHHHhhcC---CcHHHHHHHHHHHHHHHhhCCh
Q psy14015 196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEV---DYLKTDIIPMFVNLAQD---EQDSVRLLAVEACVSIASLLSQ 269 (318)
Q Consensus 196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~~---~~~~~~llp~l~~ll~D---~~~~VR~aa~~~l~~l~~~l~~ 269 (318)
+-++|.....+...+..+...+..+|..++.. .+ +.+...++.-+...+.. .+.+--.++++++..++..+-.
T Consensus 338 ~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l-~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~ 416 (799)
T 1vsy_4 338 EIFLNIISLGSQNKNPDIANYYISCFAYLLEL-DPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVM 416 (799)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHT-CCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTT
T ss_pred HHHHHHHHHHhCcCCcchHHHHHHHHHHHHhc-CCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhc
Confidence 45777778888899999999999999988864 44 55556666656666655 4555555667788888865543
Q ss_pred h-hhhHhhHHHHHHhccc
Q psy14015 270 S-DVEQLVMPTLRQCSVQ 286 (318)
Q Consensus 270 ~-~~~~~l~p~l~~ll~D 286 (318)
. ....++.|.|..++.-
T Consensus 417 ~~~yr~hl~~lL~l~Lpg 434 (799)
T 1vsy_4 417 DKLYRVHITNVLSMLVSK 434 (799)
T ss_dssp STTGGGHHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHHhcc
Confidence 2 3345777777776654
No 160
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=22.54 E-value=78 Score=24.08 Aligned_cols=37 Identities=11% Similarity=0.138 Sum_probs=30.5
Q ss_pred hhccchHHhhhccCchhHHHHHHHHHHHHHHhhCChh
Q psy14015 88 VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH 124 (318)
Q Consensus 88 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~ 124 (318)
.+.+++.|..-+.+..+.|.-+|+..|-.++.+.++.
T Consensus 47 ~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~ 83 (140)
T 1vdy_A 47 VKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSE 83 (140)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHH
T ss_pred HHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHH
Confidence 4668888888888888889999999999998877664
No 161
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=21.93 E-value=4.1e+02 Score=23.37 Aligned_cols=91 Identities=15% Similarity=0.266 Sum_probs=65.0
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhhHHHHHHhc-----hhhh-HhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhCCh
Q psy14015 196 AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE-----VDYL-KTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ 269 (318)
Q Consensus 196 ~~ll~~l~~l~~D~~~~VR~~aa~~L~~l~~~~~-----~~~~-~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~~l~~ 269 (318)
+.....+.+|++.++.-.|+.+.+-||++.-.-. ..++ ..+-+-.+..+++|++..+|--|...+--+...=.+
T Consensus 208 d~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K 287 (341)
T 1upk_A 208 DRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNK 287 (341)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCC
Confidence 4567778889999999999999999999985211 1111 235777888999999999999888777665532211
Q ss_pred h--------hhhHhhHHHHHHhccc
Q psy14015 270 S--------DVEQLVMPTLRQCSVQ 286 (318)
Q Consensus 270 ~--------~~~~~l~p~l~~ll~D 286 (318)
. ...+.|+-.+..+..|
T Consensus 288 ~~~I~~IL~~Nr~kLl~fl~~f~~d 312 (341)
T 1upk_A 288 TQPILDILLKNQAKLIEFLSKFQND 312 (341)
T ss_dssp CHHHHHHHHHTHHHHHHHHHHTTTT
T ss_pred ChHHHHHHHHHHHHHHHHHHhCCCC
Confidence 1 1235577778888877
No 162
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=21.84 E-value=3.7e+02 Score=22.78 Aligned_cols=115 Identities=10% Similarity=0.117 Sum_probs=66.6
Q ss_pred HhhhHHHHHHHhhcCC-CchhhhhhhhhhhhhccccCcchHHHHHHHHHhhccCCCcccccchhhcCccchHHHHHHHHH
Q psy14015 126 LEAHFVPLVQRLASGD-WFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRN 204 (318)
Q Consensus 126 ~~~~ilp~~~~l~~d~-~~~vR~~a~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vR~~v~~~~~~~~~~ll~~l~~ 204 (318)
+.-++.|++..-.++. ....|.++.+.+|.+...-..++-.-+ ...+++|..++
T Consensus 98 iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fL-------------------------L~tEiiplCLr 152 (268)
T 2fv2_A 98 IPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFL-------------------------LTTEIIPLCLR 152 (268)
T ss_dssp GGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHH-------------------------HHTTHHHHHHH
T ss_pred chHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHH-------------------------HhhhHHHHHHH
Confidence 4445778876555543 356888888887766643222222221 12457788888
Q ss_pred hhcCCCHHHHHHHHHhhHHHHHHh-c-------hhh---hHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHh
Q psy14015 205 LCQDDTPMVRRAAAGKLGELAKVV-E-------VDY---LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIAS 265 (318)
Q Consensus 205 l~~D~~~~VR~~aa~~L~~l~~~~-~-------~~~---~~~~llp~l~~ll~D~~~~VR~aa~~~l~~l~~ 265 (318)
.++-.+..-+..|+..+.++...- | .|. +...+=..+..+.++|+...-+..+.+-..+++
T Consensus 153 ime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsd 224 (268)
T 2fv2_A 153 IMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSD 224 (268)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred HHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 877777777777777777665311 1 111 112233355566778887776666665555553
Done!