RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14015
(318 letters)
>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat. The HEAT repeat family is
related to armadillo/beta-catenin-like repeats (see
pfam00514). These EZ repeats are found in subunits of
cyanobacterial phycocyanin lyase and other proteins and
probably carry out a scaffolding role.
Length = 55
Score = 35.5 bits (82), Expect = 0.002
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 211 PMVRRAAAGKLGELAKVVE--VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSI 263
VR AAA LG LA + +++P + L +D+ D VR A A I
Sbjct: 1 WEVREAAALALGALAGGGPELLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats. This family includes multiple
HEAT repeats.
Length = 88
Score = 35.4 bits (82), Expect = 0.005
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 17/103 (16%)
Query: 15 IAVLIDEL-KNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALA 72
+ L++ L + D ++R + + ALG+ E +P L E + D D EV A A
Sbjct: 1 LEALLEALLSDPDPEVRAAAAR-------ALGELGDP-EALPALLELLKDPDPEVRRAAA 52
Query: 73 EQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLR 115
E LG +G PE + LL E L ++ VVR A +L
Sbjct: 53 EALG----KLGDPEALPALL---ELLQDDDDAVVRAAAASALA 88
Score = 33.1 bits (76), Expect = 0.027
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 8/61 (13%)
Query: 205 LCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIA 264
L D P VR AAA LGEL + +P + L +D VR A EA +
Sbjct: 8 LLSDPDPEVRAAAARALGELGD--------PEALPALLELLKDPDPEVRRAAAEALGKLG 59
Query: 265 S 265
Sbjct: 60 D 60
Score = 30.8 bits (70), Expect = 0.22
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 203 RNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEA 259
L +D P VRRAAA LG+L + L L D+ VR A A
Sbjct: 37 LELLKDPDPEVRRAAAEALGKLGDPEALPALLE-------LLQDDDDAVVRAAAASA 86
>gnl|CDD|202500 pfam02985, HEAT, HEAT repeat. The HEAT repeat family is related to
armadillo/beta-catenin-like repeats (see pfam00514).
Length = 31
Score = 33.6 bits (78), Expect = 0.006
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 198 LRSHFRNLCQDDTPMVRRAAAGKLGELAKVV 228
L L D P VR AAA LG LA+V+
Sbjct: 1 LLPLLLELLNDPDPEVREAAAEALGALAEVL 31
Score = 31.7 bits (73), Expect = 0.023
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 237 IIPMFVNLAQDEQDSVRLLAVEACVSIASLL 267
++P+ + L D VR A EA ++A +L
Sbjct: 1 LLPLLLELLNDPDPEVREAAAEALGALAEVL 31
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats. An approximately
40 amino acid long tandemly repeated sequence motif
first identified in the Drosophila segment polarity gene
armadillo; these repeats were also found in the
mammalian armadillo homolog beta-catenin, the junctional
plaque protein plakoglobin, the adenomatous polyposis
coli (APC) tumor suppressor protein, and a number of
other proteins. ARM has been implicated in mediating
protein-protein interactions, but no common features
among the target proteins recognized by the ARM repeats
have been identified; related to the HEAT domain; three
consecutive copies of the repeat are represented by this
alignment model.
Length = 120
Score = 34.6 bits (80), Expect = 0.014
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 194 VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE---VDYLKTDIIPMFVNLAQDEQD 250
V+A L + + V +AA L LA E + L+ +P VNL +
Sbjct: 46 VEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNE 105
Query: 251 SVRLLAVEACVSIAS 265
++ A A ++AS
Sbjct: 106 DIQKNATGALSNLAS 120
>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and
conversion].
Length = 335
Score = 30.7 bits (69), Expect = 0.98
Identities = 56/267 (20%), Positives = 91/267 (34%), Gaps = 45/267 (16%)
Query: 7 APDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE 66
DD+ + + L + +++ L+ + + E L + + DED
Sbjct: 1 LSDDADVVRSAAVLVLLSYGS-EAAAALQALAELDDLI--LELAPEAADELLKLLEDEDL 57
Query: 67 VL-LALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHD 125
++ L+ A LG +G E V P L L + E+ VRD A ++L +
Sbjct: 58 LVRLSAAVALG----ELGSEEAV----PLLRELLSDEDPRVRDAAADALGEL-------G 102
Query: 126 LEAHFVPLVQRL-ASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQ 184
PLV+ L + +A L + G + L L +D+
Sbjct: 103 DPEAVPPLVELLENDENEGVRAAAARALGKL-------GDERALDPLLEALQDEDSGSAA 155
Query: 185 GHVWECGSGVKA------------ELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY 232
+ V+A E L +D+ VRRAAA LG+L
Sbjct: 156 AALDAALLDVRAAAAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSENVE-- 213
Query: 233 LKTDIIPMFVNLAQDEQDSVRLLAVEA 259
+ V DE VR A+ A
Sbjct: 214 ----AADLLVKALSDESLEVRKAALLA 236
>gnl|CDD|223358 COG0281, SfcA, Malic enzyme [Energy production and conversion].
Length = 432
Score = 28.3 bits (64), Expect = 5.9
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 5/51 (9%)
Query: 65 DEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETV--VRDKAVES 113
DE+ +A AE + EY ++PP + V A+E
Sbjct: 355 DEMKIAAAEAIADLAREEVLEEY---IIPPPFDPRVISRVAVAVAKAAMEE 402
>gnl|CDD|226149 COG3622, Hfi, Hydroxypyruvate isomerase [Carbohydrate transport and
metabolism].
Length = 260
Score = 28.0 bits (63), Expect = 7.0
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 84 GPEYVHCL--LPPLESLATVEETVVRDKAVESLRLISAQHSPHDL 126
G + VHCL +PP V+ + VE+LR + + +
Sbjct: 98 GCKQVHCLAGIPP----EGVDTEAMWATFVENLRYAADLLAAEGI 138
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.392
Gapped
Lambda K H
0.267 0.0715 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,919,789
Number of extensions: 1521786
Number of successful extensions: 1243
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1239
Number of HSP's successfully gapped: 20
Length of query: 318
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 221
Effective length of database: 6,635,264
Effective search space: 1466393344
Effective search space used: 1466393344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)