RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14015
(318 letters)
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 248 bits (634), Expect = 4e-78
Identities = 173/288 (60%), Positives = 205/288 (71%), Gaps = 9/288 (3%)
Query: 4 SDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYD 63
+ + DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+TIYD
Sbjct: 1 AAADGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYD 60
Query: 64 EDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP 123
EDEVLLALAEQLGTFT VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +HSP
Sbjct: 61 EDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSP 120
Query: 124 HDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQ 183
DLEAHFVPLV+RLA GDWFTSRTSACGLFSVCYPRV++ VKAELR +FRNLC DDTPM
Sbjct: 121 SDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMV 180
Query: 184 QGHVWECGSG---------VKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLK 234
+ VK+E+ F NL D+ VR A +A+++ + L+
Sbjct: 181 RRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLE 240
Query: 235 TDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQ 282
++P A+D+ VR + + + + + ++P +
Sbjct: 241 ALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQN 288
Score = 108 bits (271), Expect = 1e-26
Identities = 61/295 (20%), Positives = 109/295 (36%), Gaps = 15/295 (5%)
Query: 3 SSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIY 62
S + +P D L+ L D S L ++ + EL +
Sbjct: 115 SHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCS 174
Query: 63 DED-EVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQH 121
D+ V A A +LG F + ++P +LA+ E+ VR AVE+ I+
Sbjct: 175 DDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL 234
Query: 122 SPHDLEAHFVPLVQRLAS-GDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
DLEA +P +++ A W A + K +L F+NL +D
Sbjct: 235 PQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCE 294
Query: 181 PMQQGH----VWECGSGVKAELR---------SHFRNLCQDDTPMVRRAAAGKLGELAKV 227
+ V E + A+ R + L D V+ A A + L+ +
Sbjct: 295 AEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPI 354
Query: 228 VEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQ 282
+ D ++P+F+ +DE VRL + + ++ + Q ++P + +
Sbjct: 355 LGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVE 409
Score = 96.2 bits (239), Expect = 3e-22
Identities = 41/261 (15%), Positives = 90/261 (34%), Gaps = 11/261 (4%)
Query: 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAE 73
+ + + + + + ++ + ++ LG++ T L+P + DE EV L +
Sbjct: 326 LPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIIS 385
Query: 74 QLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPL 133
L +G + LLP + LA + VR +E + L++ Q + L
Sbjct: 386 NLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSL 445
Query: 134 VQRLASGDWFTSRTSACGLFSVCYPRV-TAGVKAELRSHFRNLCQDDTPMQ-QGHVWECG 191
+ R +A + A + + D + ++
Sbjct: 446 CMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCIN 505
Query: 192 --------SGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVN 243
+ + D VR A L ++ +++ L++++ P+
Sbjct: 506 VLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEK 565
Query: 244 LAQDEQDSVRLLAVEACVSIA 264
L QD+ V+ A EA ++
Sbjct: 566 LTQDQDVDVKYFAQEALTVLS 586
Score = 86.2 bits (213), Expect = 7e-19
Identities = 47/297 (15%), Positives = 101/297 (34%), Gaps = 15/297 (5%)
Query: 1 MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
+A D + L +++ ++R K + + A+G E T+ +L+P
Sbjct: 230 IAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNL 289
Query: 61 IYDED-EVLLALAEQLGTFTPNVG----GPEYVHCLLPPLESLATVEETVVRDKAVESLR 115
+ D + EV A + ++ F N+ + +LP ++ L + V+ +
Sbjct: 290 MKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIM 349
Query: 116 LISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACG-LFSVCYPRVTAGVKAELRSHFRN 174
+S + H +PL + R + L V + L
Sbjct: 350 GLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVE 409
Query: 175 LCQDDTPMQQ-------GHVWECGSG--VKAELRSHFRNLCQDDTPMVRRAAAGKLGELA 225
L +D + + +L S D +R AA L +L
Sbjct: 410 LAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLV 469
Query: 226 KVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQ 282
+ ++ IIP + ++ D R+ + ++ + Q + ++PT+ +
Sbjct: 470 EKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLR 526
Score = 75.8 bits (186), Expect = 2e-15
Identities = 38/223 (17%), Positives = 79/223 (35%), Gaps = 11/223 (4%)
Query: 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAE 73
+ + + +LK+E ++RLN I L + +G + L+P + E D V LA+ E
Sbjct: 365 LPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIE 424
Query: 74 QLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPL 133
+ +G + L + +R+ A +L+ + + A +P
Sbjct: 425 YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPK 484
Query: 134 VQRLASGDWFTSRTSACGLFSVCYPRVTA-GVKAELRSHFRNLCQDDTPMQQGHVWEC-- 190
V ++ + R + +V + + D + +V +
Sbjct: 485 VLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQ 544
Query: 191 -------GSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAK 226
S +++E++ L QD V+ A L L+
Sbjct: 545 KIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSL 587
Score = 29.2 bits (65), Expect = 1.8
Identities = 9/49 (18%), Positives = 21/49 (42%)
Query: 236 DIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCS 284
I + ++ ++E +RL +++ +IA L ++P L
Sbjct: 10 YPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI 58
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding;
1.80A {Synthetic}
Length = 201
Score = 52.3 bits (126), Expect = 3e-08
Identities = 43/229 (18%), Positives = 76/229 (33%), Gaps = 32/229 (13%)
Query: 41 ALALGQERTRGELIPFLTETIYDEDEVL-LALAEQLGTFTPNVGGPEYVHCLLPPLESLA 99
+ E + + + D+ + A A LG +G V PL
Sbjct: 4 SHHHHHHTDP-EKVEMYIKNLQDDSYYVRRAAAYALG----KIGDERAV----EPLIKAL 54
Query: 100 TVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPR 159
E+ VR A ++L I E PL++ L D + +++A L + R
Sbjct: 55 KDEDAWVRRAAADALGQIGD-------ERAVEPLIKALKDEDGWVRQSAAVALGQIGDER 107
Query: 160 VTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAG 219
+ L+ +D ++ + G +D+ VR++AA
Sbjct: 108 AVEPLIKALKD-------EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAAD 160
Query: 220 KLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLS 268
LGE+ + LA+ R +AV + SL+S
Sbjct: 161 ALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSLIS 201
Score = 32.7 bits (75), Expect = 0.11
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 11/70 (15%)
Query: 207 QDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASL 266
+D+ VRRAAA LG++ + + +DE VR A A + +
Sbjct: 55 KDEDAWVRRAAADALGQIG--------DERAVEPLIKALKDEDGWVRQSAAVA---LGQI 103
Query: 267 LSQSDVEQLV 276
+ VE L+
Sbjct: 104 GDERAVEPLI 113
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure,
structural genomics; 2.20A {Pyrococcus horikoshii}
Length = 253
Score = 51.2 bits (122), Expect = 1e-07
Identities = 38/264 (14%), Positives = 84/264 (31%), Gaps = 42/264 (15%)
Query: 22 LKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAEQLGTFTP 80
++ E+ +R ++ + L + ++ L E + D+ V+ +
Sbjct: 3 MEEEEFDIR-EALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAK 61
Query: 81 NVGGPEYVHCLLPPLES-LATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLAS 139
+ +L L S L E + + ++ + A+ P +++ L
Sbjct: 62 TR--EDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQM-AKEKPELVKSMIPVLFANYRI 118
Query: 140 GDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELR 199
GD T + L + + S R+
Sbjct: 119 GDEKTKINVSYALEEIA-----KANPMLMASIVRDF------------------------ 149
Query: 200 SHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEA 259
++ + A + + + Y+ +P +NL D + VR AVEA
Sbjct: 150 ---MSMLSSKNREDKLTALNFIEAMGEN-SFKYVN-PFLPRIINLLHDGDEIVRASAVEA 204
Query: 260 CVSIASLLSQSDVEQLVMPTLRQC 283
V +A+L + ++V+ L +
Sbjct: 205 LVHLATL--NDKLRKVVIKRLEEL 226
Score = 41.2 bits (96), Expect = 2e-04
Identities = 26/142 (18%), Positives = 52/142 (36%), Gaps = 13/142 (9%)
Query: 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE----VLLA 70
I VL + D + ++N L IA ++ + ++ L
Sbjct: 109 IPVLFANYRIGDEKTKINVSYALEEIAK--ANPMLMASIVRDFMSMLSSKNREDKLTALN 166
Query: 71 LAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHF 130
E +G +YV+ LP + +L + +VR AVE+L ++ + L
Sbjct: 167 FIEAMGE-----NSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLND--KLRKVV 219
Query: 131 VPLVQRLASGDWFTSRTSACGL 152
+ ++ L ++T G+
Sbjct: 220 IKRLEELNDTSSLVNKTVKEGI 241
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding;
HET: 1PE 12P; 2.15A {Synthetic}
Length = 211
Score = 50.8 bits (122), Expect = 1e-07
Identities = 42/218 (19%), Positives = 72/218 (33%), Gaps = 31/218 (14%)
Query: 43 ALGQERTRGELIPFLTETIYDEDEVL-LALAEQLGTFTPNVGGPEYVHCLLPPLESLATV 101
A R E + + + D+ + A A LG +G V PL
Sbjct: 10 AAAPLRADPEKVEMYIKNLQDDSYYVRRAAAYALG----KIGDERAV----EPLIKALKD 61
Query: 102 EETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVT 161
E+ VR A ++L I E PL++ L D + +++A L + R
Sbjct: 62 EDAWVRRAAADALGQIGD-------ERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAV 114
Query: 162 AGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKL 221
+ L+ +D ++ + G +D+ VR++AA L
Sbjct: 115 EPLIKALKD-------EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADAL 167
Query: 222 GELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEA 259
GE+ + LA+ R +AV
Sbjct: 168 GEIG--------GERVRAAMEKLAETGTGFARKVAVNY 197
Score = 42.7 bits (101), Expect = 5e-05
Identities = 46/211 (21%), Positives = 74/211 (35%), Gaps = 31/211 (14%)
Query: 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAE 73
+ + I L+++ +R + A ALG+ + L + + DED V A A+
Sbjct: 21 VEMYIKNLQDDSYYVRRAA-------AYALGKIGDE-RAVEPLIKALKDEDAWVRRAAAD 72
Query: 74 QLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPL 133
LG +G V PL E+ VR A +L I E PL
Sbjct: 73 ALG----QIGDERAV----EPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPL 117
Query: 134 VQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSG 193
++ L DWF +A L + R + L+ +D ++Q G
Sbjct: 118 IKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKD-------EDGWVRQSAADALGEI 170
Query: 194 VKAELRSHFRNLCQDDTPMVRRAAAGKLGEL 224
+R+ L + T R+ A L
Sbjct: 171 GGERVRAAMEKLAETGTGFARKVAVNYLETH 201
Score = 35.8 bits (83), Expect = 0.009
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 17/111 (15%)
Query: 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAE 73
+ LI LK+ED +R+ + A ALG+ + L + + DED V + A+
Sbjct: 114 VEPLIKALKDEDWFVRIAA-------AFALGEIGDE-RAVEPLIKALKDEDGWVRQSAAD 165
Query: 74 QLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH 124
LG +GG + +E LA R AV L + + H
Sbjct: 166 ALG----EIGGER----VRAAMEKLAETGTGFARKVAVNYLETHKSFNHHH 208
Score = 33.5 bits (77), Expect = 0.059
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 207 QDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIAS 265
QDD+ VRRAAA LG++ V+ L + +DE VR A +A I
Sbjct: 29 QDDSYYVRRAAAYALGKIGDERAVEPL--------IKALKDEDAWVRRAAADALGQIGD 79
Score = 33.1 bits (76), Expect = 0.067
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 11/72 (15%)
Query: 205 LCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIA 264
+D+ VRRAAA LG++ + + +DE VR A A +
Sbjct: 58 ALKDEDAWVRRAAADALGQIG--------DERAVEPLIKALKDEDGWVRQSAAVA---LG 106
Query: 265 SLLSQSDVEQLV 276
+ + VE L+
Sbjct: 107 QIGDERAVEPLI 118
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.10A {Escherichia coli} SCOP:
a.118.1.16
Length = 280
Score = 51.0 bits (122), Expect = 2e-07
Identities = 34/265 (12%), Positives = 76/265 (28%), Gaps = 31/265 (11%)
Query: 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAE 73
L L + + R++S + L G + I F + D++ A
Sbjct: 25 DDELFRLLDDHNSLKRISSARVLQLR----GGQDAVRLAIEFCS----DKNYIRRDIGAF 76
Query: 74 QLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPL 133
LG + V +L + VR A+ES ++ + +
Sbjct: 77 ILGQIKICKKCEDNVFNIL--NNMALNDKSACVRATAIESTAQRCKKNPIYSPKI-VEQS 133
Query: 134 VQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSG 193
R +A + + + L+ + ++ +
Sbjct: 134 QITAFDKSTNVRRATAFAISVINDKATIPLLINLLKD-------PNGDVRNWAAFAININ 186
Query: 194 VK--AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDS 251
+++R F + QD VR A L + L + ++++
Sbjct: 187 KYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVL----------CDELKKNT 236
Query: 252 VRLLAVEACVSIASLLSQSDVEQLV 276
V +EA + ++ ++
Sbjct: 237 VYDDIIEAAGELGDKTLLPVLDTML 261
Score = 39.8 bits (93), Expect = 7e-04
Identities = 30/221 (13%), Positives = 54/221 (24%), Gaps = 51/221 (23%)
Query: 41 ALALGQERTRGEL-IPFLTETIYDEDEVL-LALAEQLGTFTPNVGGPEYVHCLLPPLESL 98
+ G +L L + D + + ++ A L GG + V
Sbjct: 11 SKEYGLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQ----LRGGQDAV----RLAIEF 62
Query: 99 ATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYP 158
+ + + RD L I D + + L T+
Sbjct: 63 CSDKNYIRRDIGAFILGQIKICKKCEDNVFNIL-NNMALNDKSACVRATAIEST------ 115
Query: 159 RVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAA 218
+ ++ + D + VRRA A
Sbjct: 116 --------------------------AQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATA 149
Query: 219 GKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEA 259
+ + + L +NL +D VR A A
Sbjct: 150 FAISVINDKATIPLL--------INLLKDPNGDVRNWAAFA 182
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.2 bits (119), Expect = 5e-07
Identities = 51/345 (14%), Positives = 102/345 (29%), Gaps = 103/345 (29%)
Query: 17 VL-IDELKNEDVQLRLNSIKKLSTIA-LALGQERTRGELIPFLTETIYDEDEVLLALAEQ 74
+ +D + VQ +++ I L L + ++ L + +Y D + ++
Sbjct: 165 WVALDVCLSYKVQCKMDF-----KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 75 LGTFTPNVG-----------GPEYVHCLLPPLESLATVEE------------TVV--RDK 109
+ Y +CLL L V+ ++ R K
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLL----VLLNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 110 AVESLRLISAQHSPH-DLEAHFVPLVQR-----LASGDWFTSRTS-----ACGLFSVCYP 158
V +SA + H L+ H + L L + R P
Sbjct: 276 QV--TDFLSAATTTHISLDHHSMTLTPDEVKSLLLK--YLDCRPQDLPREVLT----TNP 327
Query: 159 RVTAGVKAELR---SHFRNLCQDDTPMQQGHVWECGSGVK----AELRSHFRNLC--QDD 209
R + + +R + + N + + + E S + AE R F L
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNC-DKLTTIIE--SSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 210 TPMVRRAAAGKLGELAKVVEV--DYLKTDIIPMFVN-------LAQDEQDSVRLLAVEAC 260
+ ++ + + + + VN + + ++S
Sbjct: 385 AHIP-----------TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST-------- 425
Query: 261 VSIASLLSQSDVEQLVMPTLRQCSVQIVDH-----KFCPNNEFHP 300
+SI S+ + V+ L + IVDH F ++ P
Sbjct: 426 ISIPSIYLELKVKLENEYALHR---SIVDHYNIPKTFDSDDLIPP 467
Score = 36.8 bits (84), Expect = 0.010
Identities = 41/317 (12%), Positives = 84/317 (26%), Gaps = 99/317 (31%)
Query: 14 PIAV-LIDELKNEDVQ-----LRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEV 67
P + +I E + + +N K + I +L L P ++
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV------LEPAEYRKMF----- 375
Query: 68 LLALAEQLGTFTPNVGGPEYVHCLLPPLESL-ATVEETVVRDKAVESLRLISAQHSPHDL 126
++L F P+ P + L + V ++ V + +
Sbjct: 376 -----DRLSVFPPSAHIPTIL------LSLIWFDVIKSDVMVVVNKLHK----------- 413
Query: 127 EAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSH---------FRNLCQ 177
L S S + Y + ++ E H +
Sbjct: 414 --------YSLVEKQPKESTISIPSI----YLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 178 DDTPMQQG----------HVWECGSGVKAELRSHFRNLCQDDTPM---VRRA-----AAG 219
DD H+ E + FR + D + +R A+G
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIE---HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518
Query: 220 KLGELAKVVEVDYLK--TDIIPMFVNLAQD--------EQDSVRLLAVEACVSIASLLSQ 269
+ + ++ Y D P + L E++ + + +
Sbjct: 519 SILNTLQQLKF-YKPYICDNDPKYERLVNAILDFLPKIEENLIC----SKYTDLLRIALM 573
Query: 270 SDVEQLVMPTLRQCSVQ 286
++ E + +Q VQ
Sbjct: 574 AEDEAIFEEAHKQ--VQ 588
Score = 36.4 bits (83), Expect = 0.013
Identities = 35/260 (13%), Positives = 75/260 (28%), Gaps = 77/260 (29%)
Query: 8 PDDSLYPIAVLI---DELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDE 64
P + P +L ++ DV + +N + K S L Q + T +I
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS---LVEKQPKES-------TISIPS- 430
Query: 65 DEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH 124
+ L L +L E + V+ +
Sbjct: 431 --IYLELKVKL-------------------------ENEYALHRSIVDHYNIPKT-FDSD 462
Query: 125 DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQ 184
D +P ++ + + E + FR + D ++Q
Sbjct: 463 D----LIPPY---LDQYFY---------SHIGHHLKNIE-HPERMTLFRMVFLDFRFLEQ 505
Query: 185 -----GHVWECGSGVK---AELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLK-- 234
W + +L+ + +C +D R A + + +E + +
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA--ILDFLPKIEENLICSK 563
Query: 235 -TDIIPMFVNLA-QDEQDSV 252
TD+ + +A E +++
Sbjct: 564 YTDL----LRIALMAEDEAI 579
Score = 30.2 bits (67), Expect = 1.1
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 17/84 (20%)
Query: 229 EVDYLKTDIIPMFV-----NL-AQDEQDSVR-LLAVEACVSIASLLSQSDVEQ--LVMPT 279
E Y DI+ +F N +D QD + +L+ E I ++S+ V + T
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI--IMSKDAVSGTLRLFWT 70
Query: 280 LRQCSVQIVDHKFC-----PNNEF 298
L ++V KF N +F
Sbjct: 71 LLSKQEEMVQ-KFVEEVLRINYKF 93
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger,
ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Length = 1230
Score = 44.3 bits (103), Expect = 4e-05
Identities = 36/308 (11%), Positives = 76/308 (24%), Gaps = 55/308 (17%)
Query: 8 PDDSLYPIA-VLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGE--------LIPFLT 58
+ + I L + ++ QLR S L T+ L + + LT
Sbjct: 80 KEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLT 139
Query: 59 ETIYDED------EVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVE 112
I ++ E L +A+ L + + +L L T VR + +
Sbjct: 140 SAIAKQEDVSVQLEALDIMADMLSRQGGLLV--NFHPSILTCLLPQLTSPRLAVRKRTII 197
Query: 113 SLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHF 172
+L + L+ L+ D ++ + + + +
Sbjct: 198 ALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISR----QAGHRIGEYL 253
Query: 173 RNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD- 231
+ C D +R + +
Sbjct: 254 EKIIP-----------------------LVVKFCNVDDDELREYCIQAFESFVRRCPKEV 290
Query: 232 --YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMP--------TLR 281
++ T I L D + + A D +R
Sbjct: 291 YPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVR 350
Query: 282 QCSVQIVD 289
+ + + +D
Sbjct: 351 RAAAKCLD 358
Score = 30.5 bits (67), Expect = 0.89
Identities = 29/247 (11%), Positives = 64/247 (25%), Gaps = 19/247 (7%)
Query: 37 LSTIALALGQERTRGELIPFLTETIYDED------EVLLALAEQLGTFTPNVGGPEYVHC 90
+ + +L+ LT +Y + + ++A+ + T
Sbjct: 759 FQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVV 818
Query: 91 LLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSAC 150
+ + +R A+ SL + +++ +S ++
Sbjct: 819 GQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASY 878
Query: 151 GL-------FSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFR 203
L P V + ++ + + L + V V+ +
Sbjct: 879 ALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIW-ALLL 937
Query: 204 NLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSI 263
C+ R A LG+L + ++P R V A
Sbjct: 938 KHCECAEEGTRNVVAECLGKLTLIDP-----ETLLPRLKGYLISGSSYARSSVVTAVKFT 992
Query: 264 ASLLSQS 270
S Q
Sbjct: 993 ISDHPQP 999
Score = 30.1 bits (66), Expect = 1.1
Identities = 39/291 (13%), Positives = 84/291 (28%), Gaps = 36/291 (12%)
Query: 18 LIDELKNEDVQLRLNSIKKLSTIALALGQE---RTRGELIPFLTETIYDEDEVLLALA-E 73
L L+ L+L ++ L + ++ L I + D + +A
Sbjct: 655 LASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAIS 714
Query: 74 QLGTFTPNVG--GPEYVHCLLPPLESLATVEETVVRDKAVESL-RLISAQHSPHDLEAHF 130
L T + +L L + V +++ A+ ++ A +
Sbjct: 715 FLTTLAKVYPSSLSKISGSILNEL--IGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGY 772
Query: 131 VPLVQRLASGDW-----------FTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDD 179
+ L++ L + + S + P+ V + +N
Sbjct: 773 MDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKN--SRS 830
Query: 180 TPMQQGHVWEC--------GSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD 231
T + + EL+S + V+ AA+ LG ++ +
Sbjct: 831 TDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPE 890
Query: 232 YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQ 282
YL P + + + L + + I S S ++ V
Sbjct: 891 YL-----PFVLQEITSQPKR-QYLLLHSLKEIISSASVVGLKPYVENIWAL 935
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat,
micro plus END, +TIP, protein binding; 2.10A {Drosophila
melanogaster}
Length = 242
Score = 43.1 bits (101), Expect = 5e-05
Identities = 24/202 (11%), Positives = 53/202 (26%), Gaps = 17/202 (8%)
Query: 91 LLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLA---SGDW-FTSR 146
+ ++ +R +++E L + P + LV L + D
Sbjct: 16 MPKDFYDKLEEKKWTLRKESLEVLEKL-LTDHPKLENGEYGALVSALKKVITKDSNVVLV 74
Query: 147 TSACGLFSVCYPRVTAGVKAELR---SHFRNLCQDDTPMQQGHVWEC-----GSGVKAEL 198
A ++ + ++ P + E S
Sbjct: 75 AMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQ 134
Query: 199 RSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD----YLKTDIIPMFVNLAQDEQDSVRL 254
+ + P V+ A + + L + V + +VR
Sbjct: 135 QESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRD 194
Query: 255 LAVEACVSIASLLSQSDVEQLV 276
+ EA ++ L+ V L+
Sbjct: 195 SSAEALGTLIKLMGDKAVTPLL 216
Score = 39.2 bits (91), Expect = 0.001
Identities = 35/217 (16%), Positives = 65/217 (29%), Gaps = 35/217 (16%)
Query: 18 LIDELKNEDVQLRLNSIKKLSTIALALGQERTR--GELIPFLTETIY-DEDEVLLALAEQ 74
D+L+ + LR S++ L + + G L+ L + I D + VL+A+A +
Sbjct: 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGK 79
Query: 75 LGTFTPNVGGPE---YVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFV 131
Y +P L ++ V E++ I A S
Sbjct: 80 CLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQ----Q 135
Query: 132 PLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECG 191
+ S + ++ + R A + + L
Sbjct: 136 ESIVESLSNKNPSVKSETALFIARALTRTQP--TALNKKLLKLLTT-------------- 179
Query: 192 SGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVV 228
+ P VR ++A LG L K++
Sbjct: 180 ---------SLVKTLNEPDPTVRDSSAEALGTLIKLM 207
Score = 31.1 bits (70), Expect = 0.35
Identities = 14/123 (11%), Positives = 48/123 (39%), Gaps = 11/123 (8%)
Query: 203 RNLCQDDTPMVRRAAAGKLGELAKVVEVDYLK--TDIIPMFVNLAQDEQDSVRLLAVEAC 260
+ + +D ++ A L LAK + + + +P + ++++ +V EA
Sbjct: 63 KVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAI 122
Query: 261 VSIASLLSQSDVEQLVM-------PTLRQCSVQIVDHKF--CPNNEFHPLELHVISATTL 311
+I + S ++ ++ P+++ + + + L +++ + +
Sbjct: 123 DAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLV 182
Query: 312 RLM 314
+ +
Sbjct: 183 KTL 185
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 40.4 bits (94), Expect = 6e-04
Identities = 44/286 (15%), Positives = 88/286 (30%), Gaps = 46/286 (16%)
Query: 1 MASSDSAPDDSLYPIAV--LIDELKNEDVQLRLNSIKKLSTIALALGQERT-----RGEL 53
A +D + +V ++ + + +++ +L + + + L+ ++ R L
Sbjct: 43 KAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKL-LSREKQPPIDNIIRAGL 101
Query: 54 IPFLTETIYDED------EVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVR 107
IP + D E AL + + T +P SL +
Sbjct: 102 IPKFVSFLGKTDCSPIQFESAWALTN-IASGTSEQTKAVVDGGAIPAFISLLASPHAHIS 160
Query: 108 DKAVESLRLISAQHSPHD----LEAHFV-PLVQRLASGDWFTSRTSACGLFSVCYPRVTA 162
++AV +L I A ++ + PL+ LA D T
Sbjct: 161 EQAVWALGNI-AGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG-------------- 205
Query: 163 GVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLG 222
L NLC++ P ++ L + P V + +
Sbjct: 206 -YLRNLTWTLSNLCRNKNPAPP-------LDAVEQILPTLVRLLHHNDPEVLADSCWAIS 257
Query: 223 ELAKVVE---VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIAS 265
L +K ++P V L + + A+ A +I +
Sbjct: 258 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 303
Score = 30.8 bits (69), Expect = 0.73
Identities = 41/295 (13%), Positives = 82/295 (27%), Gaps = 59/295 (20%)
Query: 15 IAVLIDELKNEDVQLRLNSIKKLSTIALA--------LGQERTRGELIPFLTETIYDED- 65
I L+ L D+ + T L+ +++P L ++ D
Sbjct: 187 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 246
Query: 66 EVLLALAEQLGTFTPNVGGPEYVHCL-----LPPLESLATVEETVVRDKAVESLRLISAQ 120
EVL + T G E + + +P L L E + A+ ++ I
Sbjct: 247 EVLADSCWAISYLT--DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI-VT 303
Query: 121 HSPHD----LEAHFVPLVQRLASGDWFTSRTSACGLFS-----------------VCYPR 159
+ ++A + + L + + A S +
Sbjct: 304 GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFL 363
Query: 160 VTAGVKAELRSH------FRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMV 213
V KA+ ++ N T Q ++ CG + NL +
Sbjct: 364 VGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG------IIEPLMNLLSAKDTKI 417
Query: 214 RRAAAGKLGELAKVVEVDYLKTDIIPMFV---------NLAQDEQDSVRLLAVEA 259
+ + + + E + M L + E +SV ++
Sbjct: 418 IQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 472
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum,
structural proteomics, heat-like repeat; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Length = 131
Score = 37.3 bits (87), Expect = 0.002
Identities = 22/102 (21%), Positives = 34/102 (33%), Gaps = 17/102 (16%)
Query: 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-VLLALAE 73
L++ L NED ++R A +G + + L + + D+ V A
Sbjct: 44 FEPLLESLSNEDWRIR-------GAAAWIIGNFQDE-RAVEPLIKLLEDDSGFVRSGAAR 95
Query: 74 QLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLR 115
L +GG +E LA R AV L
Sbjct: 96 SLE----QIGGERVR----AAMEKLAETGTGFARKVAVNYLE 129
Score = 35.7 bits (83), Expect = 0.005
Identities = 28/168 (16%), Positives = 45/168 (26%), Gaps = 54/168 (32%)
Query: 92 LPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACG 151
L P S E VR +L + + F PL++ L++ DW +A
Sbjct: 14 LVPRGSHMADENKWVRRDVSTALSRMG--------DEAFEPLLESLSNEDWRIRGAAAWI 65
Query: 152 LFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTP 211
+ + R L +DD+
Sbjct: 66 IGNFQDERAVE--------------------------------------PLIKLLEDDSG 87
Query: 212 MVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEA 259
VR AA L ++ + LA+ R +AV
Sbjct: 88 FVRSGAARSLEQIG--------GERVRAAMEKLAETGTGFARKVAVNY 127
Score = 35.0 bits (81), Expect = 0.009
Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 18/104 (17%)
Query: 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAE 73
+ + +E+ +R + ++ AL R E L E++ +ED + A A
Sbjct: 14 LVPRGSHMADENKWVRRD-------VSTALS--RMGDEAFEPLLESLSNEDWRIRGAAAW 64
Query: 74 QLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLI 117
+G N V PL L + VR A SL I
Sbjct: 65 IIG----NFQDERAV----EPLIKLLEDDSGFVRSGAARSLEQI 100
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 38.6 bits (89), Expect = 0.002
Identities = 37/253 (14%), Positives = 68/253 (26%), Gaps = 31/253 (12%)
Query: 41 ALALGQERTRGELIPFLTETIYDEDE---------VLLALAEQLGTFTPNVGGPEYVHCL 91
L L + +L I + +L + +G E L
Sbjct: 418 GLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEAL 477
Query: 92 LPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACG 151
L + + + A + L + Q G+ +R A G
Sbjct: 478 KEVLYN----DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNI--TRGLAVG 531
Query: 152 LFSVCYPRVTAGVKAELRSHFRNLCQDDTPM-QQGHVW-----ECGSGVKAELRSHFRNL 205
L + Y G + + D + + G + G+G + ++
Sbjct: 532 LALINY-----GRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVA 586
Query: 206 CQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIAS 265
D VRRAA LG + T + + L++ VR A +
Sbjct: 587 VSDSNDDVRRAAVIALGFVLLRDY-----TTVPRIVQLLSKSHNAHVRCGTAFALGIACA 641
Query: 266 LLSQSDVEQLVMP 278
++ P
Sbjct: 642 GKGLQSAIDVLDP 654
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription;
1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A
1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A
3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A
3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 38.6 bits (90), Expect = 0.002
Identities = 25/181 (13%), Positives = 49/181 (27%), Gaps = 34/181 (18%)
Query: 92 LPPLESLATVEETVVRDKAVESLRLISAQHSPHD---LEAHFVP-LVQRLASGDWFTSRT 147
+P L L E+ VV +KA + +S + + V +V+ + + + +
Sbjct: 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 78
Query: 148 SACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ 207
G NL + +++ G G+ A +
Sbjct: 79 CTAGT-------------------LHNLSHHREGLLA--IFKSG-GIPA-----LVKMLG 111
Query: 208 DDTPMVRRAAAGKLGELAKVVE---VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIA 264
V A L L E + + V L + + +A
Sbjct: 112 SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 171
Query: 265 S 265
Sbjct: 172 Y 172
Score = 38.2 bits (89), Expect = 0.003
Identities = 32/182 (17%), Positives = 58/182 (31%), Gaps = 32/182 (17%)
Query: 92 LPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVP-LVQRLASGDWFTSRTSAC 150
+ L T + + +LR +S + + + LVQ L S D T A
Sbjct: 229 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD-INVVTCAA 287
Query: 151 GLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDT 210
G+ S NL ++ + V + G G++A +R+ R D
Sbjct: 288 GILS-------------------NLTCNN-YKNKMMVCQVG-GIEALVRTVLRA---GDR 323
Query: 211 PMVRRAAAGKLGELA------KVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIA 264
+ A L L ++ + +P+ V L + A +
Sbjct: 324 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 383
Query: 265 SL 266
+L
Sbjct: 384 AL 385
Score = 37.8 bits (88), Expect = 0.003
Identities = 39/267 (14%), Positives = 86/267 (32%), Gaps = 34/267 (12%)
Query: 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-------- 66
+ L L + +L N + L ++ A ++ L+ L + + +D
Sbjct: 229 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAG 288
Query: 67 VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDL 126
+L L V + L+ + E+ + + A+ +LR ++++H ++
Sbjct: 289 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED--ITEPAICALRHLTSRHQEAEM 346
Query: 127 EAHFV-------PLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSH-----FRN 174
+ V +V+ L + + GL + A LR
Sbjct: 347 AQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA--LCPANHAPLREQGAIPRLVQ 404
Query: 175 LCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE--VDY 232
L Q + + + + + G L LA+ V +
Sbjct: 405 LLVRAHQDTQRRT--------SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 456
Query: 233 LKTDIIPMFVNLAQDEQDSVRLLAVEA 259
+ IP+FV L ++++ +A
Sbjct: 457 RGLNTIPLFVQLLYSPIENIQRVAAGV 483
Score = 32.1 bits (73), Expect = 0.25
Identities = 29/283 (10%), Positives = 69/283 (24%), Gaps = 38/283 (13%)
Query: 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTR---GELIPFLTETIY--DEDEVLL 69
I L L +ED + + + ++ +++ + T+ ++ E
Sbjct: 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 78
Query: 70 ALAEQLGTFTPNVGGPEYVHCL--LPPLESLATVEETVVRDKAVESLRLISAQHSPHD-- 125
A L + + G + +P L + V A+ +L +
Sbjct: 79 CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 138
Query: 126 -LEAHFVP-LVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRN--------- 174
A + +V L + + L + Y E +
Sbjct: 139 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY------GNQESKLIILASGGPQALVN 192
Query: 175 -LCQDDTPMQQGHVWECGS--GVKAELRSHFR---------NLCQDDTPMVRRAAAGKLG 222
+ V + + D + + + L
Sbjct: 193 IMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 252
Query: 223 ELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIAS 265
L+ ++ V L + +V A ++
Sbjct: 253 NLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 295
Score = 29.4 bits (66), Expect = 1.7
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 203 RNLCQDDTPMVRRAAAGKLGELAKVVE--VDYLKTDIIPMFVNLAQDEQDSVRLLAVEAC 260
R + + R AG L L+ E + K+ IP V + DSV A+
Sbjct: 66 RTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITT- 124
Query: 261 VSIASLLSQSDVEQLVM 277
+ +LL + ++ +
Sbjct: 125 --LHNLLLHQEGAKMAV 139
Score = 29.0 bits (65), Expect = 2.1
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 6/71 (8%)
Query: 204 NLCQDDTPMVRRAAAGKLGELAKVVEVDY---LKTDIIPMFVNLAQDEQDSVRLLAVEAC 260
L D+ +V AA + +L+K + ++ V Q+ D +
Sbjct: 24 KLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND---VETARCT 80
Query: 261 VSIASLLSQSD 271
LS
Sbjct: 81 AGTLHNLSHHR 91
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin,
tetra-tricopeptide repeat, binding protein required for
myosin function; 2.99A {Drosophila melanogaster}
Length = 810
Score = 38.7 bits (89), Expect = 0.002
Identities = 30/206 (14%), Positives = 60/206 (29%), Gaps = 29/206 (14%)
Query: 92 LPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFV------PLVQRLASGDWFTS 145
+ L +A + A ++L I +P + PL+ L
Sbjct: 538 VKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALE 597
Query: 146 RTSACG----LFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWEC-------GSGV 194
+ L S+ +K + S +D +C +
Sbjct: 598 NFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVI 657
Query: 195 KAELRSHFR-----NLCQDDTPMVRRAAAGKLGELA----KVVEVDYLKTDIIPMFVNLA 245
K ++ R LC+D+ A AG L + K E + + L
Sbjct: 658 KMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLI 717
Query: 246 QDEQDSVRLLAVEACVSIASLLSQSD 271
+ +V+ V I ++++ +
Sbjct: 718 ANPSPAVQH---RGIVIILNMINAGE 740
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 38.5 bits (89), Expect = 0.002
Identities = 48/290 (16%), Positives = 92/290 (31%), Gaps = 50/290 (17%)
Query: 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERT----RGELIPFLTETIYDED----- 65
+ + +L ++D+Q +L++ K I + + ++P L E + +
Sbjct: 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 148
Query: 66 -EVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPH 124
E AL + + T +P L V+++A+ +L + A S
Sbjct: 149 LEAAWALTN-IASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNV-AGDSTD 206
Query: 125 D----LEAHFV-PLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDD 179
L+ + + P++ S RT+ L NLC+
Sbjct: 207 YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTL--------------------SNLCRGK 246
Query: 180 TPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY---LKTD 236
P V ++ L A + L+ + +
Sbjct: 247 KPQPDWSV-------VSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVR 299
Query: 237 IIPMFVNLAQDEQDSVRLLAVEACVSIAS---LLSQSDVEQLVMPTLRQC 283
I V L E V+ A+ A +I + L +Q + V+P LR
Sbjct: 300 IPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 349
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 37.9 bits (87), Expect = 0.005
Identities = 29/193 (15%), Positives = 66/193 (34%), Gaps = 24/193 (12%)
Query: 109 KAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLF----SVCYPRVTAGV 164
+ V+ +L P D + + ++ +L S D +R+ + + + GV
Sbjct: 31 RTVQQ-KLEQLNQYP-DFNNYLIFVLTKLKSED-EPTRSLSGLILKNNVKAHFQNFPNGV 87
Query: 165 KAELRSHFRNLCQDDTPMQQGHVWECGSGVKA--------ELRSHFRNLCQDDTPMVRRA 216
++S N D +P+ + V + + + +L +L +
Sbjct: 88 TDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEG 147
Query: 217 AAGKLGELAKVV-------EVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ 269
A G L ++ + +D +IP F+ + +R AV +Q
Sbjct: 148 AFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ 207
Query: 270 SDVEQL--VMPTL 280
+ + + + L
Sbjct: 208 ALMLHIDSFIENL 220
Score = 35.5 bits (81), Expect = 0.022
Identities = 54/296 (18%), Positives = 100/296 (33%), Gaps = 50/296 (16%)
Query: 8 PDDSLYPIAVLIDELKNEDVQLRL-------NSIKKLSTIALALGQERTRGELIPFLTET 60
PD + Y + ++ +LK+ED R N++K + + E + + ++
Sbjct: 44 PDFNNY-LIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDS 102
Query: 61 IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLI--- 117
+ L + + P+ LLP L SL E+ + A +L+ I
Sbjct: 103 SPLIRATVGILITTIASKGELQNWPD----LLPKLCSLLDSEDYNTCEGAFGALQKICED 158
Query: 118 -SAQHSPHDLEAHFVPLVQRLASGDWFTS---RTSACGLFSVCYPRVTAGVKAELRSHFR 173
+ L+ ++ + +S R+ A + T + + S
Sbjct: 159 SAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIE 218
Query: 174 NLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYL 233
NL L D+ P VR+ L L +V +D L
Sbjct: 219 NLFA---------------------------LAGDEEPEVRKNVCRALVMLLEV-RMDRL 250
Query: 234 K---TDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQCSVQ 286
+I+ + QD+ ++V L A E +++A DV +P L V
Sbjct: 251 LPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVN 306
Score = 34.0 bits (77), Expect = 0.067
Identities = 46/327 (14%), Positives = 93/327 (28%), Gaps = 53/327 (16%)
Query: 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQ-------ERTRGELIPFLTETIYDEDEV 67
+ L L +ED + L I + +R +IP +
Sbjct: 130 LPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPK 189
Query: 68 LLALAEQ-LGTFTPNVGGPEYVHC--LLPPLESLATVEETVVRDKAVESLRLISAQHSPH 124
+ + A + F + +H + L +LA EE VR +L ++ +
Sbjct: 190 IRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVML-LEVRMD 248
Query: 125 DLEAHFVPLVQ---RLASGDWFTSRTSACGLFSVC-----YPRVTAGVKAELRSHFRNLC 176
L H +V+ + AC + V +L N
Sbjct: 249 RLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGM 308
Query: 177 Q---DDTPMQQGHVWE---------------------------CGSGVKAELRSHFRNLC 206
+ D + +G V + + + L
Sbjct: 309 KYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELL 368
Query: 207 QDDTPMVRRAAA---GKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSI 263
+V+ + G + E + YL ++IP + D++ VR +
Sbjct: 369 FHHEWVVKESGILVLGAIAEGCMQGMIPYLP-ELIPHLIQCLSDKKALVRSITCWTLSRY 427
Query: 264 ASLLSQSDVEQLVMPTLRQCSVQIVDH 290
A + + + P + + +I+D
Sbjct: 428 AHWVVSQPPDTYLKPLMTELLKRILDS 454
Score = 32.8 bits (74), Expect = 0.15
Identities = 46/271 (16%), Positives = 81/271 (29%), Gaps = 27/271 (9%)
Query: 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTR--GELIPFLTETIYDEDEVLLALA 72
I L +E+ ++R N + L + ++ ++ + D+DE + A
Sbjct: 217 IENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEA 276
Query: 73 -EQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFV 131
E T + + LP L V D + L+ S D
Sbjct: 277 CEFWLTLAEQPICKDVLVRHLPKLIP-VLVNGMKYSDIDIILLKGDVEGGSGGDDTI--- 332
Query: 132 PLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQ------- 184
DW R + V + + + L + +
Sbjct: 333 --------SDW-NLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVL 383
Query: 185 GHVWE-CGSGVKAELRS---HFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPM 240
G + E C G+ L H D +VR L A V T + P+
Sbjct: 384 GAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPL 443
Query: 241 FVNLAQDEQDSVRLLAVEACVSIASLLSQSD 271
L + DS + + AC + A+L ++
Sbjct: 444 MTELLKRILDSNKRVQEAACSAFATLEEEAC 474
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 36.8 bits (85), Expect = 0.008
Identities = 25/181 (13%), Positives = 49/181 (27%), Gaps = 34/181 (18%)
Query: 92 LPPLESLATVEETVVRDKAVESLRLISAQHSPHD---LEAHFVP-LVQRLASGDWFTSRT 147
+P L L E+ VV +KA + +S + + V +V+ + + + +
Sbjct: 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 75
Query: 148 SACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQ 207
G NL + +++ G G+ A +
Sbjct: 76 CTAGT-------------------LHNLSHHREGLLA--IFKSG-GIPA-----LVKMLG 108
Query: 208 DDTPMVRRAAAGKLGELAKVVE---VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIA 264
V A L L E + + V L + + +A
Sbjct: 109 SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 168
Query: 265 S 265
Sbjct: 169 Y 169
Score = 32.6 bits (74), Expect = 0.20
Identities = 44/271 (16%), Positives = 73/271 (26%), Gaps = 28/271 (10%)
Query: 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERT---RGELIPFLTETIY---DEDEVL 68
+ L+ L ++D+ + + LS + + + + I L T+ D +++
Sbjct: 265 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 324
Query: 69 LALAEQLGTFTPNVGGPEYV------HCLLPPLESLATVEETVVRDKAVESLRLISAQHS 122
L T E H LP + L KA L A
Sbjct: 325 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 384
Query: 123 PHD---LEAHFV-PLVQRLASGDWFTSRTSACGLFSVCY--PRVTAGVKAELRSHFRNLC 176
+ E + LVQ L T R ++ G + + L
Sbjct: 385 ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA 444
Query: 177 QDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE--VDYLK 234
+D F L ++R AAG L ELA+ E
Sbjct: 445 RDVHNRIVI--------RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA 496
Query: 235 TDIIPMFVNLAQDEQDSVRLLAVEACVSIAS 265
L + V A ++
Sbjct: 497 EGATAPLTELLHSRNEGVATYAAAVLFRMSE 527
Score = 31.8 bits (72), Expect = 0.27
Identities = 35/294 (11%), Positives = 82/294 (27%), Gaps = 46/294 (15%)
Query: 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTR---GELIPFLTETIYDED--EVLL 69
I L L +ED + + + ++ +++ + T+ + + E
Sbjct: 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 75
Query: 70 ALAEQLGTFTPNVGGPEYVHCL--LPPLESLATVEETVVRDKAVESLRLISAQHSPHDLE 127
A L + + G + +P L + V A+ +L + +
Sbjct: 76 CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 135
Query: 128 AHFV----PLVQRLASGDWFTSRTSACGLFSVCY--PRVTAGVKAE---------LRSH- 171
+V L + + L + Y + A +R++
Sbjct: 136 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 195
Query: 172 -----------FRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGK 220
+ L + + E G G++A D + + +
Sbjct: 196 YEKLLWTTSRVLKVLSVCSSNKPA--IVEAG-GMQA-----LGLHLTDPSQRLVQNCLWT 247
Query: 221 LGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQ 274
L L+ ++ V L + +V I S L+ ++ +
Sbjct: 248 LRNLSDAATKQEGMEGLLGTLVQLLGSDDINVV----TCAAGILSNLTCNNYKN 297
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.020
Identities = 50/334 (14%), Positives = 83/334 (24%), Gaps = 141/334 (42%)
Query: 45 GQERTRG-------ELI-------PFLTETIYDEDEVLLALAEQLGTFTP------NVG- 83
GQ G EL + + I E L L N+
Sbjct: 162 GQ----GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
Query: 84 ---GPEYVHCLLPPLESLATVEETVVRDKAVESLRLIS-AQ--H----------SPHDLE 127
P P + L ++ + S LI Q H +P +L
Sbjct: 218 WLENPSNT----PDKDYLLSI--------PI-SCPLIGVIQLAHYVVTAKLLGFTPGELR 264
Query: 128 AHFVPLVQRL----------ASGDW--FTSRTSAC--GLFSVCYPRVTAGVKAELRSH-- 171
++ + W F LF + G +R +
Sbjct: 265 SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI-------G----VRCYEA 313
Query: 172 FRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPM--VRRAAAGKLGELAKVVE 229
+ N + ++ E GV +PM + ++ V
Sbjct: 314 YPNTSLPPSILEDS--LENNEGVP--------------SPMLSISNL---TQEQVQDYVN 354
Query: 230 VDYLKTDIIPMFVN--LAQDEQDSVRLL-----AVEACVS--IASL--LSQSDVEQLVMP 278
N L +Q + L+ V VS SL L+ + +
Sbjct: 355 K-----------TNSHLPAGKQVEISLVNGAKNLV---VSGPPQSLYGLNLTLRKAKAPS 400
Query: 279 TLRQCSV---Q---IVDHKF----CPNNEFH-PL 301
L Q + + ++F P FH L
Sbjct: 401 GLDQSRIPFSERKLKFSNRFLPVASP---FHSHL 431
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 35.0 bits (80), Expect = 0.036
Identities = 31/285 (10%), Positives = 79/285 (27%), Gaps = 42/285 (14%)
Query: 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTR---GELIPFLTETIY--DEDEVLL 69
I L L +ED + + + ++ +++ + T+ ++ E
Sbjct: 152 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 211
Query: 70 ALAEQLGTFTPNVGGPEYV--HCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLE 127
+ L + + G + +P L ++ V A+ +L + +
Sbjct: 212 CTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMA 271
Query: 128 AHFV----PLVQRLASGDWFTSRTSACGLFSVCY---PRVTAGVKAE--------LRSH- 171
+V L + + L + Y + + +R++
Sbjct: 272 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 331
Query: 172 -----------FRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGK 220
+ L + + E G G++A D + + +
Sbjct: 332 YEKLLWTTSRVLKVLSVCS--SNKPAIVEAG-GMQA-----LGLHLTDPSQRLVQNCLWT 383
Query: 221 LGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIAS 265
L L+ ++ V L + +V A ++
Sbjct: 384 LRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 428
Score = 30.8 bits (69), Expect = 0.64
Identities = 41/304 (13%), Positives = 84/304 (27%), Gaps = 55/304 (18%)
Query: 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-------- 66
+ L L + +L N + L ++ A ++ L+ L + + +D
Sbjct: 362 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAG 421
Query: 67 VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDL 126
+L L V + L+ + E+ + + A+ +LR ++++H ++
Sbjct: 422 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED--ITEPAICALRHLTSRHQDAEM 479
Query: 127 EAHFV-------PLVQRLASGDWFTSRTSACGLFSVCY---------------------- 157
+ V +V+ L + + GL
Sbjct: 480 AQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 539
Query: 158 PRVTAGVKAELRSHFRNLCQDDTPMQQGHVWEC---------GSGVKAELRSH-----FR 203
R + + + V C + +R F
Sbjct: 540 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFV 599
Query: 204 NLCQDDTPMVRRAAAGKLGELAKVVE--VDYLKTDIIPMFVNLAQDEQDSVRLLAVEACV 261
L ++R AAG L ELA+ E L + V A
Sbjct: 600 QLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 659
Query: 262 SIAS 265
++
Sbjct: 660 RMSE 663
Score = 30.4 bits (68), Expect = 0.79
Identities = 13/103 (12%), Positives = 26/103 (25%), Gaps = 12/103 (11%)
Query: 172 FRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAK---VV 228
++ + Q + L D+ +V AA + +L+K
Sbjct: 131 LKHAVVNLINYQDDAELATR-AIPE-----LTKLLNDEDQVVVNKAAVMVHQLSKKEASR 184
Query: 229 EVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSD 271
++ V Q+ D + LS
Sbjct: 185 HAIMRSPQMVSAIVRTMQNTND---VETARCTSGTLHNLSHHR 224
Score = 27.7 bits (61), Expect = 5.9
Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 4/59 (6%)
Query: 207 QDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIAS 265
+ + M++ A + L T IP L DE V A ++
Sbjct: 125 AEPSQMLKHAVVNLINYQDDAE----LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK 179
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo
sapiens} PDB: 3tj3_A
Length = 450
Score = 34.1 bits (78), Expect = 0.052
Identities = 40/291 (13%), Positives = 88/291 (30%), Gaps = 50/291 (17%)
Query: 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTR-----GELIPFLTETIYDED---- 65
+ +I+ + ++ + +L++ +K + ++ E + ++
Sbjct: 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTL 81
Query: 66 --EVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSP 123
E L + + +P L + E V+++AV +L I A S
Sbjct: 82 QFESAWVLTN-IASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNI-AGDST 139
Query: 124 HD----LEAHFV-PLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQD 178
L+ + + PL+Q + + T +A S NLC+
Sbjct: 140 MCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALS-------------------NLCRG 180
Query: 179 DTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDY---LKT 235
+P + + + L V A L L+ +
Sbjct: 181 KSPPPE-------FAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDA 233
Query: 236 DIIPMFVNLAQDEQDSVRLLAVEACVSIAS---LLSQSDVEQLVMPTLRQC 283
+ V L V A+ A +I + + +Q + + +L
Sbjct: 234 GVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHL 284
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive
structure, iron sulfur proteins, nitrogen fixation;
2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Length = 244
Score = 32.9 bits (75), Expect = 0.095
Identities = 13/59 (22%), Positives = 18/59 (30%), Gaps = 15/59 (25%)
Query: 202 FRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEAC 260
L +D +VRRA A +L L DE VR+ +
Sbjct: 79 LTPLIRDSDEVVRRAVAYRLPREQ---------------LSALMFDEDREVRITVADRL 122
Score = 29.1 bits (65), Expect = 1.7
Identities = 16/58 (27%), Positives = 20/58 (34%), Gaps = 15/58 (25%)
Query: 202 FRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEA 259
+ QD P VRR A +L + L D +VRL AVE
Sbjct: 175 LGLMTQDPEPEVRRIVASRLRG---------------DDLLELLHDPDWTVRLAAVEH 217
Score = 28.7 bits (64), Expect = 2.2
Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 15/56 (26%)
Query: 205 LCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEAC 260
+D+ VR+ A +L E + QD + VR +
Sbjct: 154 FMRDEDRQVRKLVAKRLPE---------------ESLGLMTQDPEPEVRRIVASRL 194
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell
cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A
3au3_A 3qhe_A
Length = 354
Score = 32.9 bits (75), Expect = 0.11
Identities = 26/158 (16%), Positives = 48/158 (30%), Gaps = 34/158 (21%)
Query: 88 VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHD------LEAHFVP-LVQRLASG 140
+ L+ L + + + LR +S+ + ++ E + + L+Q L S
Sbjct: 216 LAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH 275
Query: 141 DWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRS 200
+ L NL + P Q +W+ G V
Sbjct: 276 SLTIVSNACGTL--------------------WNLSARN-PKDQEALWDMG-AVSM---- 309
Query: 201 HFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDII 238
+NL M+ +A L L Y +I+
Sbjct: 310 -LKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIM 346
Score = 28.3 bits (63), Expect = 4.0
Identities = 22/192 (11%), Positives = 55/192 (28%), Gaps = 22/192 (11%)
Query: 92 LPPLESLATVEETVVRDKAVESLRLIS--AQHSPHDLEAHFVP-LVQRLASGDWFTSRTS 148
+ ++ AV L +S +H E + + + L T+
Sbjct: 34 MDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTN 93
Query: 149 ACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQD 208
++ A NL D + G ++A +
Sbjct: 94 DHYSITLRRYAGMA---------LTNLTFGDVANKATLCSMKG-CMRA-----LVAQLKS 138
Query: 209 DTPMVRRAAAGKLGELAKVVEVDY----LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIA 264
++ +++ A L L+ +V+ + + + A + + L +V + +
Sbjct: 139 ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNL 198
Query: 265 SLLSQSDVEQLV 276
S + +
Sbjct: 199 SAHCTENKADIC 210
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat,
microtubule plus END, +TIP, protein binding; 1.70A
{Saccharomyces cerevisiae}
Length = 249
Score = 31.6 bits (71), Expect = 0.30
Identities = 25/244 (10%), Positives = 69/244 (28%), Gaps = 44/244 (18%)
Query: 6 SAPDDSLYPIAVLI-------DELKNEDVQLRLNSIKKLSTIALALGQERTR-----GEL 53
S L +L + + + + R+ ++++ L+ ++ L
Sbjct: 2 SHMASMLPEETILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNL 61
Query: 54 IPFLTETIYDED---------EVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEET 104
+ I + + + + ++L +YV + PL ++
Sbjct: 62 LGIYGHIIQKDANIQAVALAAQSVELICDKLK---TPGFSKDYVSLVFTPLLDRTKEKKP 118
Query: 105 VVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGV 164
V + ++L I + P +++ + +T P++
Sbjct: 119 SVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEH--MKHKT----------PQIRMEC 166
Query: 165 KAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGEL 224
+ + + +Q+ E+ + D P +R L
Sbjct: 167 TQLFNASMKEEKDGYSTLQRYLK--------DEVVPIVIQIVNDTQPAIRTIGFESFAIL 218
Query: 225 AKVV 228
K+
Sbjct: 219 IKIF 222
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 31.7 bits (71), Expect = 0.31
Identities = 32/288 (11%), Positives = 89/288 (30%), Gaps = 30/288 (10%)
Query: 16 AVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED---------E 66
+ L + + ++ + + ++ IA EL+ + + E
Sbjct: 98 TNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLL 157
Query: 67 VLLALAEQLGTFTPNVGGPEYVHCLLPPL--ESLATVEETVVRDKAVESL----RLISAQ 120
L + E + + + +L + + +T VR A+ +L I
Sbjct: 158 ALGYMCESADPQSQAL--VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNN 215
Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
+ + +V + + +A G ++ + ++ + T
Sbjct: 216 MEREGERNYLMQVVCEATQAEDIEVQAAAFGCLC----KIMSKYYTFMKPYMEQALYALT 271
Query: 181 PMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPM 240
+ V + + +C+++ + A L D++P
Sbjct: 272 IATMKSPND---KVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPN 328
Query: 241 FVNL------AQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQ 282
+NL ++ D ++ AC+ + + + + + V+ + Q
Sbjct: 329 LLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQ 376
Score = 27.9 bits (61), Expect = 5.2
Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 4/106 (3%)
Query: 190 CGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKT---DIIPMFVNLAQ 246
CG+ + + D R AA G + + +P +NL
Sbjct: 362 CGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMN 421
Query: 247 DEQDSVRLLAVEACVSIASLLSQS-DVEQLVMPTLRQCSVQIVDHK 291
D+ V+ IA +++S D +Q + ++ C + + DH
Sbjct: 422 DQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHP 467
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 31.1 bits (71), Expect = 0.34
Identities = 46/271 (16%), Positives = 92/271 (33%), Gaps = 53/271 (19%)
Query: 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGEL-----IPFLTETIYDEDEVLL 69
+ + +L ++D+Q +L++ +K S + + +P L + + +E +L
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFS--QILSDGNEQIQAVIDAGALPALVQLLSSPNEQIL 71
Query: 70 ALAEQLGTFTPN--VGGPEYVHCL-----LPPLESLATVEETVVRDKAVESLRLISAQHS 122
A L + N GG E + + LP L L + + +A+ +L I++
Sbjct: 72 QEA--LWALS-NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GG 127
Query: 123 PHD----LEAHFVP-LVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQ 177
++A +P LVQ L+S + + + L N+
Sbjct: 128 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL--------------------SNIAS 167
Query: 178 DDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE---VDYLK 234
Q V + G + A L + + A L +A +
Sbjct: 168 GGNE-QIQAVIDAG-ALPA-----LVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE 220
Query: 235 TDIIPMFVNLAQDEQDSVRLLAVEACVSIAS 265
+ L E + ++ A EA + S
Sbjct: 221 AGALEKLEQLQSHENEKIQKEAQEALEKLQS 251
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 31.5 bits (71), Expect = 0.38
Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 3/93 (3%)
Query: 193 GVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVV--EVDYLKTDIIPMFVNLAQDEQD 250
+KA L + + + + A + +V ++IP+ D +
Sbjct: 130 AIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKK 189
Query: 251 SVRLLAVEACVSIASLLSQSDVEQLVMPTLRQC 283
V+ A A + D+E+ + P+L QC
Sbjct: 190 EVKAAATAAMTKATETVDNKDIERFI-PSLIQC 221
Score = 27.3 bits (60), Expect = 9.4
Identities = 23/155 (14%), Positives = 51/155 (32%), Gaps = 4/155 (2%)
Query: 3 SSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRG-ELIPFLTETI 61
S S+ + L +L R ++++ E L + I
Sbjct: 4 HHHSDSQQSIKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGI 63
Query: 62 YDEDEVLLALAEQLGTFTPNVGGPE---YVHCLLPPLESLATVEETVVRDKAVESLRLIS 118
D+ A+ + P Y+ L+P + + A ++ ++ A E+L I
Sbjct: 64 KDKKTAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIV 123
Query: 119 AQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLF 153
+P ++A L + + + + + F
Sbjct: 124 NAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAF 158
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.30A {Homo sapiens}
SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A
2qna_A
Length = 876
Score = 31.0 bits (69), Expect = 0.54
Identities = 13/98 (13%), Positives = 34/98 (34%)
Query: 197 ELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLA 256
+ L +D + +VR AA +G + +++ + + + + + +A
Sbjct: 408 QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVA 467
Query: 257 VEACVSIASLLSQSDVEQLVMPTLRQCSVQIVDHKFCP 294
C + +SL + V + + + F
Sbjct: 468 SNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFEL 505
>3vqi_A ATG5; autophagy, E3-like, ubiquitin-fold, PRE-autoph structure,
protein turnover, protein transport; HET: EPE; 2.50A
{Kluyveromyces marxianus}
Length = 274
Score = 30.0 bits (67), Expect = 0.79
Identities = 4/60 (6%), Positives = 14/60 (23%), Gaps = 2/60 (3%)
Query: 131 VPLVQRLASGDWFTSRTSACGLFSVCYPRVT--AGVKAELRSHFRNLCQDDTPMQQGHVW 188
+ + ++ + T A + R + + + + W
Sbjct: 16 INVEVVVSDAIVVPNTTLADKSCHIVMLRDAYLGFYLPTVVRKLADTIKVPYESDYRNWW 75
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats,
hypothetical, unknown function; 2.20A {Thermococcus
onnurineus}
Length = 265
Score = 29.4 bits (65), Expect = 1.5
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 3/71 (4%)
Query: 192 SGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLK---TDIIPMFVNLAQDE 248
+ L +D R A LGE+ K + D + +F+N E
Sbjct: 28 ALEDKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQE 87
Query: 249 QDSVRLLAVEA 259
+ V + A+ A
Sbjct: 88 NEKVTIKALRA 98
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Homo
sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B
1w63_B
Length = 591
Score = 29.7 bits (67), Expect = 1.5
Identities = 17/80 (21%), Positives = 30/80 (37%)
Query: 203 RNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVS 262
R +D+ P VR+ AA + +L + + +L D V AV A
Sbjct: 127 RKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSE 186
Query: 263 IASLLSQSDVEQLVMPTLRQ 282
I+ S++ L + +
Sbjct: 187 ISESHPNSNLLDLNPQNINK 206
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.9
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 9/39 (23%)
Query: 64 EDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVE 102
E + L L L + + P L AT+E
Sbjct: 18 EKQALKKLQASLKLYADDSA---------PALAIKATME 47
Score = 28.4 bits (62), Expect = 2.0
Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 10/23 (43%)
Query: 32 NSIKKL----------STIALAL 44
++KKL S ALA+
Sbjct: 20 QALKKLQASLKLYADDSAPALAI 42
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear
transport receptor, cell cycle, translation; HET: GNP;
2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A
1f59_A 1o6o_A 1o6p_A
Length = 462
Score = 29.0 bits (64), Expect = 2.0
Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 3/97 (3%)
Query: 190 CGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKT---DIIPMFVNLAQ 246
C + + + ++ R AA G + + E LK +P + L +
Sbjct: 359 CEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK 418
Query: 247 DEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQC 283
D VR A I LL ++ + + + L QC
Sbjct: 419 DPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQC 455
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A
{Bacillus phage SPP1}
Length = 444
Score = 29.0 bits (66), Expect = 2.2
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 68 LLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEE--TVVRDKAVESLR-LISA 119
++A ++G P +GG Y+ L + S T ++ V + R IS
Sbjct: 66 FTSIAARVGEKLPQLGGFGYLTELAASVASTTTFKQHCQTVSEYFQ--KRKAISI 118
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats,
cell adhesion-CE complex; 3.01A {Homo sapiens}
Length = 458
Score = 28.8 bits (64), Expect = 2.8
Identities = 24/145 (16%), Positives = 44/145 (30%), Gaps = 34/145 (23%)
Query: 88 VHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHD------LEAHFVP-LVQRLASG 140
+ L+ L + + + LR +S+ + ++ E + + L+Q L S
Sbjct: 332 LAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH 391
Query: 141 DWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRS 200
+ L NL + P Q +W+ G V
Sbjct: 392 SLTIVSNACGTL--------------------WNLSARN-PKDQEALWDMG-AVSM---- 425
Query: 201 HFRNLCQDDTPMVRRAAAGKLGELA 225
+NL M+ +A L L
Sbjct: 426 -LKNLIHSKHKMIAMGSAAALRNLM 449
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 28.6 bits (65), Expect = 3.2
Identities = 21/138 (15%), Positives = 39/138 (28%), Gaps = 50/138 (36%)
Query: 4 SDSAPDDSLYPIAVLIDELKNEDVQLRLN----SIKKLSTIALALGQERTRGELIPFLTE 59
+ A + +L E ++ L ++++ +
Sbjct: 105 DEGAEQ----IVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQC--- 157
Query: 60 TIYDEDEVLLA-----------------LAEQLGTFTPNVGGPEYVHCLLPPLESLA--T 100
+++A +AEQ G ++PP SL T
Sbjct: 158 -----KNLIVATGGLSMPGLGATPFGYQIAEQFG------------IPVIPPRASLVPFT 200
Query: 101 VEETVVRDKAVESLRLIS 118
ET DK + +L IS
Sbjct: 201 YRET---DKFLTALSGIS 215
>3eau_A Voltage-gated potassium channel subunit beta-2; kvbeta, cortisone,
NADPH, cytoplasm, ION transport, ionic channel, NADP,
phosphoprotein; HET: NDP PDN; 1.82A {Rattus norvegicus}
SCOP: c.1.7.1 PDB: 2r9r_A* 2a79_A* 3lnm_A* 1exb_A*
3eb4_A* 3eb3_A* 1qrq_A* 1zsx_A*
Length = 327
Score = 28.3 bits (64), Expect = 3.3
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 4 SDSAPDDS---LYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQ 46
P S L L D++ +E+ + + +K+L IA LG
Sbjct: 222 DSGIPPYSRASLKGYQWLKDKILSEEGRRQQAKLKELQAIAERLGC 267
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1z3h_A
Length = 960
Score = 28.7 bits (63), Expect = 3.3
Identities = 9/68 (13%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
Query: 211 PMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQS 270
++R A + + L +++P+ Q ++ V A ++I +L+
Sbjct: 472 IILRVDAIKYIYTFRNQLTKAQLI-ELMPILATFLQTDEYVVY---TYAAITIEKILTIR 527
Query: 271 DVEQLVMP 278
+
Sbjct: 528 ESNTSPAF 535
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: NAD EPE; 2.12A {Shewanella
denitrificans}
Length = 375
Score = 28.5 bits (64), Expect = 3.5
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 5/43 (11%)
Query: 87 YVHCLLPPLESLATVEETVVRDK-AVESLRLISAQHSPHDLEA 128
++HC+ ESL A +S+ L + E
Sbjct: 215 FIHCV----ESLQGTYLNEFAKAFAEKSMDLCREVYLDDHPEK 253
>3lut_A Voltage-gated potassium channel subunit beta-2; voltage gating,
potassium channel, KV1.2, gating charges, no analysis,
ION transport; HET: NAP; 2.90A {Rattus norvegicus}
Length = 367
Score = 28.4 bits (64), Expect = 3.7
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 4 SDSAPDDS---LYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQ 46
P S L L D++ +E+ + + +K+L IA LG
Sbjct: 256 DSGIPPYSRASLKGYQWLKDKILSEEGRRQQAKLKELQAIAERLGC 301
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo
sapiens} SCOP: a.118.1.24
Length = 457
Score = 28.3 bits (62), Expect = 3.8
Identities = 8/67 (11%), Positives = 19/67 (28%), Gaps = 7/67 (10%)
Query: 204 NLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDI-----IPMFVNLAQDEQDSVRLLAVE 258
+ A + + + K + I V+L + +V+ A
Sbjct: 9 QYLSSQDEKYQAIGAYYIQHTCF--QDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAG 66
Query: 259 ACVSIAS 265
A ++
Sbjct: 67 ALRNLVF 73
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine
acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Length = 507
Score = 28.4 bits (62), Expect = 3.9
Identities = 17/97 (17%), Positives = 39/97 (40%), Gaps = 10/97 (10%)
Query: 202 FRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACV 261
+LC+D+ +RR A +L + A + + + L Q + + L A +
Sbjct: 70 QLDLCEDEDVSIRRQAIKELPQFATGENLPR----VADILTQLLQTDDSAEFNLVNNALL 125
Query: 262 SIASLLSQSDVEQL------VMPTLRQCSVQIVDHKF 292
SI + ++ + L +R+ +++ + K
Sbjct: 126 SIFKMDAKGTLGGLFSQILQGEDIVRERAIKFLSTKL 162
>1jmx_A Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A
{Pseudomonas putida} SCOP: a.3.1.7 a.3.1.7 b.1.18.14
b.1.18.14 b.61.4.1 PDB: 1jmz_A*
Length = 494
Score = 28.2 bits (62), Expect = 4.2
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 55 PFLTETIYDEDEVLLALAEQLGTFTPNVGGP 85
PF + DED + G F P GP
Sbjct: 420 PFNERAVEDEDVKFAGKMQADGVFVPGGAGP 450
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 618
Score = 27.9 bits (62), Expect = 5.4
Identities = 15/80 (18%), Positives = 24/80 (30%), Gaps = 8/80 (10%)
Query: 63 DEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESL-RLISAQH 121
+ LAL +G E L +E L + +R KA +I +
Sbjct: 120 TQFVQGLAL-----CTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVI--RK 172
Query: 122 SPHDLEAHFVPLVQRLASGD 141
P +E L +
Sbjct: 173 VPELMEMFLPATKNLLNEKN 192
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif,
de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A
4dba_A
Length = 210
Score = 27.2 bits (61), Expect = 6.3
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 92 LPPLESLATVEETVVRDKAVESLRLISAQ 120
L LE L + E ++ +A E+L + +
Sbjct: 182 LEKLEQLQSHENEKIQKEAQEALEKLQSH 210
Score = 26.8 bits (60), Expect = 7.4
Identities = 38/231 (16%), Positives = 73/231 (31%), Gaps = 54/231 (23%)
Query: 54 IPFLTETIYDED-EVLLALAEQLGTFTPNVGGPEYVHCL-----LPPLESLATVEETVVR 107
+P + + + D + L + +L GG E + + LP L L + +
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIA--SGGNEQIQAVIDAGALPALVQLLSSPNEQIL 71
Query: 108 DKAVESLRLISAQHSPHD----LEAHFVP-LVQRLASGDWFTSRTSACGLFSVCYPRVTA 162
+A+ +L I++ ++A +P LVQ L+S + + + L ++
Sbjct: 72 QEALWALSNIAS-GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS----- 125
Query: 163 GVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLG 222
Q V + G + A L + + A L
Sbjct: 126 ----------------GGNEQIQAVIDAG-ALPA-----LVQLLSSPNEQILQEALWALS 163
Query: 223 ELAK--------VVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIAS 265
+A V E + L E + ++ A EA + S
Sbjct: 164 NIASGGNEQKQAVKEAG-----ALEKLEQLQSHENEKIQKEAQEALEKLQS 209
>1pby_A Quinohemoprotein amine dehydrogenase 60 kDa subunit;
oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus
denitrificans} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14
b.61.4.1 PDB: 1jju_A*
Length = 489
Score = 27.4 bits (60), Expect = 6.6
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 55 PFLTETIYDEDEVLLALAEQLGTFTPNVGGP 85
F E +D + G FTP GP
Sbjct: 413 NFDEEAEKMQDAKYAGSIDDTGLFTPAEAGP 443
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET:
ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB:
1j1w_A*
Length = 741
Score = 27.4 bits (60), Expect = 8.0
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 14/63 (22%)
Query: 70 ALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAH 129
ALA Q E ++L E +V + L +AQ P D+ +
Sbjct: 670 ALAAQ-------TEDKELQAQFTGIAKALTDNETKIVGE-------LAAAQGKPVDIAGY 715
Query: 130 FVP 132
+ P
Sbjct: 716 YHP 718
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase;
1.75A {Corynebacterium glutamicum} PDB: 3mbc_A*
Length = 738
Score = 27.4 bits (60), Expect = 8.3
Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 14/63 (22%)
Query: 70 ALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAH 129
LA Q + P E+L T + L++ Q DL +
Sbjct: 666 ELAAQ-------TEDADLAATFAPVAEALNTGAADIDAA-------LLAVQGGATDLGGY 711
Query: 130 FVP 132
+ P
Sbjct: 712 YSP 714
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics,
protein initiative; 2.04A {Lactobacillus salivarius}
Length = 177
Score = 26.5 bits (59), Expect = 9.4
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 18 LIDELKNEDVQLRLNSIKKLSTIALAL--GQERTRGELIPFLTETIYDEDEVLLALAE 73
LI+E+K D I K AL Q RTR E+ L ED + + +
Sbjct: 7 LIEEIKLAD------DISKGYNAALNYLSYQLRTRKEVEDKLRSLDIHEDYISEIINK 58
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding;
HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP:
a.4.13.2
Length = 243
Score = 26.7 bits (60), Expect = 9.8
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 57 LTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVR 107
+ ET+Y+ D + L +Q+ + L +E L E +V
Sbjct: 160 IHETVYENDGDPITLLDQIA--DADEASWFDKIALKKAIEELDERERLIVY 208
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.392
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,720,137
Number of extensions: 280545
Number of successful extensions: 875
Number of sequences better than 10.0: 1
Number of HSP's gapped: 757
Number of HSP's successfully gapped: 139
Length of query: 318
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 224
Effective length of database: 4,077,219
Effective search space: 913297056
Effective search space used: 913297056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.3 bits)