RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14015
(318 letters)
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein
phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 588
Score = 226 bits (576), Expect = 3e-70
Identities = 211/282 (74%), Positives = 226/282 (80%), Gaps = 32/282 (11%)
Query: 2 ASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETI 61
A++D DDSLYPIAVLIDEL+NEDVQLRLNSIKKLSTIALALG ERTR EL+PFLT+TI
Sbjct: 1 AAADG--DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI 58
Query: 62 YDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQH 121
YDEDEVLLALAEQLGTFT VGGPEYVHCLLPPLESLATVEETVVRDKAVESLR IS +H
Sbjct: 59 YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEH 118
Query: 122 SPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTP 181
SP DLEAHFVPLV+RLA GDWFTSRTSACGLFSVCYPR
Sbjct: 119 SPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPR---------------------- 156
Query: 182 MQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMF 241
S VKAELR +FRNLC DDTPMVRRAAA KLGE AKV+E+D +K++IIPMF
Sbjct: 157 --------VSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMF 208
Query: 242 VNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQC 283
NLA DEQDSVRLLAVEACV+IA LL Q D+E LVMPTLRQ
Sbjct: 209 SNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQA 250
Score = 61.3 bits (147), Expect = 4e-11
Identities = 38/231 (16%), Positives = 73/231 (31%), Gaps = 10/231 (4%)
Query: 62 YDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQH 121
V ALA + +P +G + LLP + E VR + +L ++
Sbjct: 335 DANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI 394
Query: 122 SPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTA-GVKAELRSHFRNLCQDDT 180
L +P + LA + R + + ++ +L S D
Sbjct: 395 GIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHV 454
Query: 181 PMQQGHVWEC---------GSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVD 231
+ A + + D + R + L++V D
Sbjct: 455 YAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD 514
Query: 232 YLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQ 282
++P + +A D +VR ++ I +L S ++ V P L +
Sbjct: 515 ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEK 565
Score = 54.8 bits (130), Expect = 6e-09
Identities = 30/199 (15%), Positives = 64/199 (32%), Gaps = 29/199 (14%)
Query: 66 EVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHD 125
V LA+ E + +G + L + +R+ A +L+ + +
Sbjct: 417 RVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW 476
Query: 126 LEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQG 185
A +P V ++ + R + +V +C D
Sbjct: 477 AHATIIPKVLAMSGDPNYLHRMTTLFCINV----------------LSEVCGQDI----- 515
Query: 186 HVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLA 245
+ + D VR A L ++ +++ L++++ P+ L
Sbjct: 516 --------TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLT 567
Query: 246 QDEQDSVRLLAVEACVSIA 264
QD+ V+ A EA ++
Sbjct: 568 QDQDVDVKYFAQEALTVLS 586
Score = 53.3 bits (126), Expect = 2e-08
Identities = 30/208 (14%), Positives = 67/208 (32%), Gaps = 10/208 (4%)
Query: 87 YVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSR 146
+ +LP ++ L + V+ + +S + H +PL + R
Sbjct: 321 IMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVR 380
Query: 147 TSACGLFS-VCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGV---------KA 196
+ V + L L +D + + E +
Sbjct: 381 LNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDE 440
Query: 197 ELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLA 256
+L S D +R AA L +L + ++ IIP + ++ D R+
Sbjct: 441 KLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTT 500
Query: 257 VEACVSIASLLSQSDVEQLVMPTLRQCS 284
+ ++ + Q + ++PT+ + +
Sbjct: 501 LFCINVLSEVCGQDITTKHMLPTVLRMA 528
Score = 47.1 bits (110), Expect = 2e-06
Identities = 19/118 (16%), Positives = 41/118 (34%), Gaps = 1/118 (0%)
Query: 23 KNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED-EVLLALAEQLGTFTPN 81
+ +R + L + G+E +IP + D + + + +
Sbjct: 451 VDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEV 510
Query: 82 VGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLAS 139
G +LP + +A VR +SL+ I L++ P++++L
Sbjct: 511 CGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQ 568
Score = 27.8 bits (60), Expect = 1.9
Identities = 12/60 (20%), Positives = 24/60 (40%)
Query: 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQ 74
+ ++ + +R N K L I L + E+ P L + D+D + A++
Sbjct: 521 LPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQE 580
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1
(Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Length = 1207
Score = 43.2 bits (100), Expect = 3e-05
Identities = 39/283 (13%), Positives = 76/283 (26%), Gaps = 29/283 (10%)
Query: 1 MASSDSAPDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET 60
+ + + + + +L + ++ L +A E + +
Sbjct: 759 LVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQF 818
Query: 61 IYDEDE----------VLLALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKA 110
I D LL+L E +G G E +L S V+ A
Sbjct: 819 IQDVKNSRSTDSIRLLALLSLGE-VGHHIDLSGQLELKSVILEAFSS----PSEEVKSAA 873
Query: 111 VESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSV---CYPRVTAGVKAE 167
+L IS + P ++P V + + L +
Sbjct: 874 SYALGSISVGNLPE-----YLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVEN 928
Query: 168 LRSHFRNLCQDDTPMQQGHVWEC----GSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGE 223
+ + C+ + V EC L + + R + +
Sbjct: 929 IWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKF 988
Query: 224 LAKVVEVDY--LKTDIIPMFVNLAQDEQDSVRLLAVEACVSIA 264
L + I F+ +D +VR +A+ S A
Sbjct: 989 TISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAA 1031
Score = 32.4 bits (72), Expect = 0.086
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 207 QDDTPMVRRAAAGKLGELAKVVEVDYLKTD------IIPMFVNLAQDEQDSVRLLAVEAC 260
R A +L ++ D +K D ++ M + L +D+ V+ LAV+
Sbjct: 13 TSSDKDFRFMA---TNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCL 69
Query: 261 VSIASLLSQSDVEQLV 276
+ S + + VE +V
Sbjct: 70 GPLVSKVKEYQVETIV 85
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 39.8 bits (92), Expect = 4e-04
Identities = 44/319 (13%), Positives = 92/319 (28%), Gaps = 70/319 (21%)
Query: 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGQE--------------------------- 47
I L EL NE + R ++KK+ A+ +G++
Sbjct: 12 IFELKAELNNEKKEKRKEAVKKV-IAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYL 70
Query: 48 ----RTRGEL----IPFLTETIYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLPPLESLA 99
+++ ++ + + D + ++ ALA + T + + L PL
Sbjct: 71 MNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALA--VRTMG-CIRVDKITEYLCEPLRKCL 127
Query: 100 TVEETVVRDKAVESLRLISAQHSPHDLEAHFVP-LVQRLASGDWFTSRTSACGLFSVCYP 158
E+ VR A + + ++ + F+ L +A + + L +
Sbjct: 128 KDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISES 187
Query: 159 RVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAA 218
+ + + L + EC + + N D
Sbjct: 188 HPNSNLLDLNPQNINKLLT--------ALNECTEWGQIFILDCLSNYNPKD--------- 230
Query: 219 GKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQ-SDVEQLVM 277
D I +V L AV+ + LL + SD +++
Sbjct: 231 ------------DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL 278
Query: 278 PTLRQCSVQIVDHKFCPNN 296
L V ++ +
Sbjct: 279 KKLAPPLVTLLSGEPEVQY 297
Score = 35.9 bits (82), Expect = 0.006
Identities = 33/196 (16%), Positives = 65/196 (33%), Gaps = 36/196 (18%)
Query: 81 NVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASG 140
+ + +L L+ AT + KAV ++ A E L+ + +
Sbjct: 341 RLASQANIAQVLAELKEYATEVDVDFVRKAVRAIG-RCAIKVEQSAERCVSTLLDLIQTK 399
Query: 141 DWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRS 200
+ V E R++ + ++ + +
Sbjct: 400 VNY--------------------VVQEAIVVIRDIFRKYPNKY-----------ESIIAT 428
Query: 201 HFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEAC 260
NL D P R A +GE A+ ++ +++ F+ DE V+L + A
Sbjct: 429 LCENLDSLDEPDARAAMIWIVGEYAERID---NADELLESFLEGFHDESTQVQLTLLTAI 485
Query: 261 VSIASLLSQSDVEQLV 276
V + L S+ ++LV
Sbjct: 486 VKL-FLKKPSETQELV 500
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 458
Score = 39.4 bits (90), Expect = 4e-04
Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 3/97 (3%)
Query: 190 CGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKT---DIIPMFVNLAQ 246
C + + + ++ R AA G + + E LK +P + L +
Sbjct: 358 CEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK 417
Query: 247 DEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQC 283
D VR A I LL ++ + + + L QC
Sbjct: 418 DPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQC 454
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 888
Score = 37.0 bits (84), Expect = 0.003
Identities = 43/221 (19%), Positives = 70/221 (31%), Gaps = 16/221 (7%)
Query: 53 LIPFLTETIYDEDEVLLALAEQLGTFTPNVGG----PEYVHCLLPPLESLATV--EETVV 106
L + + + LL L + +GT +VG PEY+ L+PPL + +E
Sbjct: 521 LDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKD 580
Query: 107 RDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTS-ACGLFSVCYPRVTAGVK 165
+E L + A + P+ QR + T + Y
Sbjct: 581 LFPLLECLSSV-ATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFM 639
Query: 166 AELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELA 225
L + + V + + QD P VR+++ LG+L
Sbjct: 640 IVALDLLSGLAEGLGGNIEQLVARS------NILTLMYQCMQDKMPEVRQSSFALLGDLT 693
Query: 226 KVVEVDYLK--TDIIPMFVNLAQDEQDSVRLLAVEACVSIA 264
K D +P+ E SV A A I+
Sbjct: 694 KACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEIS 734
Score = 28.9 bits (63), Expect = 0.90
Identities = 35/207 (16%), Positives = 66/207 (31%), Gaps = 20/207 (9%)
Query: 102 EETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVC----- 156
++R + I+++ + L L S D+ T + L +C
Sbjct: 100 SSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAE 159
Query: 157 --YPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGV-----------KAELRSHFR 203
V + F + +P + H C + +
Sbjct: 160 ILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLF 219
Query: 204 NLCQDDTPMVRRAAAGKLGELAKVV--EVDYLKTDIIPMFVNLAQDEQDSVRLLAVEACV 261
L D+ P VR+ L L +V + +I+ + QD+ ++V L A E +
Sbjct: 220 ALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWL 279
Query: 262 SIASLLSQSDVEQLVMPTLRQCSVQIV 288
++A DV +P L V +
Sbjct: 280 TLAEQPICKDVLVRHLPKLIPVLVNGM 306
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli
[TaxId: 562]}
Length = 276
Score = 36.0 bits (81), Expect = 0.004
Identities = 8/57 (14%), Positives = 16/57 (28%), Gaps = 8/57 (14%)
Query: 204 NLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEAC 260
L D + R ++A L D + + + D+ R +
Sbjct: 26 RLLDDHNSLKRISSARVLQLRG--------GQDAVRLAIEFCSDKNYIRRDIGAFIL 74
Score = 32.9 bits (73), Expect = 0.037
Identities = 20/267 (7%), Positives = 60/267 (22%), Gaps = 43/267 (16%)
Query: 18 LIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLALAEQLGT 77
L L + + R++S + L + + E D++ + +
Sbjct: 24 LFRLLDDHNSLKRISSARVLQLRGGQ--------DAVRLAIEFCSDKNYIRRDIG--AFI 73
Query: 78 FTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRL 137
+ + L ++A +++ + +P
Sbjct: 74 LGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITA 133
Query: 138 ASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAE 197
R +A + + + L+ ++ + ++
Sbjct: 134 FDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCF 193
Query: 198 LRSHFRNLCQD------------------------DTPMVRRAAAGKLGELAKVVEVDYL 233
+ + V GEL
Sbjct: 194 VEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNTVYDDIIEAAGELG-------- 245
Query: 234 KTDIIPMFVNLAQDEQDS-VRLLAVEA 259
++P+ + D+ + A++
Sbjct: 246 DKTLLPVLDTMLYKFDDNEIITSAIDK 272
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 861
Score = 36.0 bits (81), Expect = 0.006
Identities = 20/183 (10%), Positives = 53/183 (28%), Gaps = 20/183 (10%)
Query: 95 LESLATVEETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFS 154
LE+ + +R + L+ +S + Q L + L
Sbjct: 10 LENSILSPDQNIRLTSETQLKKLSNDNFLQ----FAGLSSQVLIDENTKLEGRILAALT- 64
Query: 155 VCYPRVTAGVKAELRSHFRNLCQDDTPMQQGHVW-ECGSGVKAELRSHFRNLCQDDTPMV 213
L++ + T + K +++++ P +
Sbjct: 65 -------------LKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRI 111
Query: 214 RRAAAGKLGELAKVVEVDYLKTDIIP-MFVNLAQDEQDSVRLLAVEACVSIASLLSQSDV 272
AAA + +A + +++ M N ++ ++V+ ++ A +
Sbjct: 112 ANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQ 171
Query: 273 EQL 275
+
Sbjct: 172 ALV 174
Score = 27.5 bits (59), Expect = 2.5
Identities = 27/245 (11%), Positives = 71/245 (28%), Gaps = 20/245 (8%)
Query: 18 LIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDED---------EVL 68
+ L + + ++ + + ++ IA EL+ + + E L
Sbjct: 100 ALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLAL 159
Query: 69 LALAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKAVE----SLRLISAQHSPH 124
+ E + + + + +T VR A+ SL I
Sbjct: 160 GYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMERE 219
Query: 125 DLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDTPMQQ 184
+ + +V + + +A G C ++ + ++ + +
Sbjct: 220 GERNYLMQVVCEATQAEDIEVQAAAFG----CLCKIMSKYYTFMKPYMEQALY---ALTI 272
Query: 185 GHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNL 244
+ V + + +C+++ + A L D++P +NL
Sbjct: 273 ATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNL 332
Query: 245 AQDEQ 249
+
Sbjct: 333 LTRQN 337
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 33.2 bits (75), Expect = 0.039
Identities = 34/267 (12%), Positives = 75/267 (28%), Gaps = 33/267 (12%)
Query: 11 SLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDEVLLA 70
S L + ++ L RG L L + E +
Sbjct: 231 SASTDLQDYTYYFVPAPWLSVKLLRLLQCYP-PPEDPAVRGRLTECLETILNKAQEPPKS 289
Query: 71 LAEQLGTFTPNVG------------GPEYVHCLLPPLESLATVEETVVRDKAVESLRLIS 118
Q V P + L ET +R A+ES+ ++
Sbjct: 290 KKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLA 349
Query: 119 AQHSPHD-LEAHFVPLVQRLASGD-WFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLC 176
+ H+ ++ H ++ L + + + L+++C + AE+ S+
Sbjct: 350 SSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETAD 409
Query: 177 QDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTD 236
++ E+ L + + L ++ DY+ +
Sbjct: 410 YS---------------IREEIVLKVAILAEKYAVDYTWYVDT-ILNLIRI-AGDYVSEE 452
Query: 237 IIPMFVNLAQDEQDSVRLLAVEACVSI 263
+ + + +D V+ A +
Sbjct: 453 VWYRVIQIVI-NRDDVQGYAAKTVFEA 478
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 111
Score = 30.3 bits (67), Expect = 0.11
Identities = 20/120 (16%), Positives = 38/120 (31%), Gaps = 15/120 (12%)
Query: 102 EETVVRDKAVESLRLISAQHSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVT 161
E VR +L + + PL++ L++ DW +A + + R
Sbjct: 4 ENKWVRRDVSTALSRMGDEAFE--------PLLESLSNEDWRIRGAAAWIIGNFQDER-- 53
Query: 162 AGVKAELRSHFRNLCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKL 221
+ + L D ++ G +R+ L + T R+ A L
Sbjct: 54 -----AVEPLIKLLEDDSGFVRSGAARSLEQIGGERVRAAMEKLAETGTGFARKVAVNYL 108
Score = 28.4 bits (62), Expect = 0.44
Identities = 8/54 (14%), Positives = 15/54 (27%), Gaps = 9/54 (16%)
Query: 207 QDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQDSVRLLAVEAC 260
D+ VRR + L + + + +E +R A
Sbjct: 2 ADENKWVRRDVSTALSRMGD---------EAFEPLLESLSNEDWRIRGAAAWII 46
Score = 26.0 bits (56), Expect = 3.4
Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 8/85 (9%)
Query: 175 LCQDDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLK 234
L +D ++ W G+ L +DD+ VR AA L ++ ++
Sbjct: 31 LSNEDWRIRGAAAWIIGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQIGGERVRAAME 90
Query: 235 TDIIPMFVNLAQDEQDSVRLLAVEA 259
LA+ R +AV
Sbjct: 91 --------KLAETGTGFARKVAVNY 107
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId:
10090]}
Length = 434
Score = 31.3 bits (69), Expect = 0.17
Identities = 18/167 (10%), Positives = 46/167 (27%), Gaps = 8/167 (4%)
Query: 121 HSPHDLEAHFVPLVQRLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
+ + + D T + G +V +T + +
Sbjct: 242 TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSN--- 298
Query: 181 PMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKT----D 236
+ G + V L + ++ AA + V+ +
Sbjct: 299 -ITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG 357
Query: 237 IIPMFVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQC 283
II +NL + + + ++A +I + + + + +C
Sbjct: 358 IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEEC 404
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId:
9606]}
Length = 529
Score = 31.4 bits (69), Expect = 0.17
Identities = 23/137 (16%), Positives = 34/137 (24%), Gaps = 12/137 (8%)
Query: 132 PLVQRLASGDWFTSRTSACGLFSVCY--PRVTAGVKAELRSHFRNLCQDDTPMQQGHVWE 189
LVQ L T R ++ G + + L +D
Sbjct: 401 RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV--------HN 452
Query: 190 CGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVE--VDYLKTDIIPMFVNLAQD 247
F L ++R AAG L ELA+ E L
Sbjct: 453 RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHS 512
Query: 248 EQDSVRLLAVEACVSIA 264
+ V A ++
Sbjct: 513 RNEGVATYAAAVLFRMS 529
Score = 29.1 bits (63), Expect = 0.89
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Query: 205 LCQDDTPMVRRAAAGKLGELAKVVEV--DYLKTDIIPMFVNLAQDEQDSVRLLAVEAC 260
+ + R AG L L+ E K+ IP V + DSV A+
Sbjct: 68 MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 125
Score = 28.3 bits (61), Expect = 1.4
Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 4/66 (6%)
Query: 204 NLCQDDTPMVRRAAAGKLGELAKVVEVDYL---KTDIIPMFVNLAQDEQDS-VRLLAVEA 259
L D+ +V AA + +L+K + ++ V Q+ D
Sbjct: 24 KLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGT 83
Query: 260 CVSIAS 265
+++
Sbjct: 84 LHNLSH 89
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 876
Score = 30.9 bits (68), Expect = 0.24
Identities = 39/283 (13%), Positives = 77/283 (27%), Gaps = 20/283 (7%)
Query: 18 LIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTETIYDEDE-------VLLA 70
++ L E ++ + ++ IA A ELIP L + + + L A
Sbjct: 95 VLHTLGTET-YRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEA 153
Query: 71 LAEQLGTFTPNVGGPEYVHCLLPPLESLATVEETVVRDKA------VESLRLISAQHSPH 124
+ P + +L + EE K + SL A
Sbjct: 154 IGYICQDIDPEQLQD-KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKE 212
Query: 125 DLEAHFVPLVQRLASGDWFTSRTSACG----LFSVCYPRVTAGVKAELRSHFRNLCQDDT 180
+ +V R +A + S+ Y + + L + + D
Sbjct: 213 SERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDI 272
Query: 181 PMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPM 240
E S V E + K + + + T +
Sbjct: 273 DEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTK 332
Query: 241 FVNLAQDEQDSVRLLAVEACVSIASLLSQSDVEQLVMPTLRQC 283
D+ + A + +A+ V V+P +++
Sbjct: 333 QDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPH-VLPFIKEH 374
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter
vinelandii [TaxId: 354]}
Length = 233
Score = 27.8 bits (61), Expect = 1.4
Identities = 26/190 (13%), Positives = 44/190 (23%), Gaps = 41/190 (21%)
Query: 89 HCLLPPLESLATVEETVVRDKAVESL---RLISAQHSPH------DLEAHFVPLVQRLAS 139
+ + L L + VVR L +L + + + ++++A+
Sbjct: 65 YSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAA 124
Query: 140 GDWFTSRTSACGLFSVC---------YPRVTAGVKAELRS-HFRNLCQDDTPMQQGHVWE 189
+ R +V V L + QD P + V
Sbjct: 125 DRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVAS 184
Query: 190 CGSGVKAELRSHFRNLCQDDTPMVRRAAAGKLGELAKVVEVDYLKTDIIPMFVNLAQDEQ 249
L D VR AA A + +
Sbjct: 185 RLR------GDDLLELLHDPDWTVRLAAVEHASLEA----------------LRELDEPD 222
Query: 250 DSVRLLAVEA 259
VRL
Sbjct: 223 PEVRLAIAGR 232
Score = 27.4 bits (60), Expect = 1.9
Identities = 15/80 (18%), Positives = 24/80 (30%), Gaps = 9/80 (11%)
Query: 203 RNLCQDDTPMVRRAAAGKLGELA---------KVVEVDYLKTDIIPMFVNLAQDEQDSVR 253
L +D +VRRA A +L + V + + +A D VR
Sbjct: 72 TPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVR 131
Query: 254 LLAVEACVSIASLLSQSDVE 273
V+ D +
Sbjct: 132 AYVVQRIPPGRLFRFMRDED 151
>d1tm9a_ a.225.1.1 (A:) Hypothetical protein MG354 {Mycoplasma
genitalium [TaxId: 2097]}
Length = 137
Score = 25.8 bits (56), Expect = 4.1
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 6 SAPDDSLYPIAVLIDELKNEDVQ-----LRLNSIKKLSTIALALGQ 46
S+ D L PI +I+ K+E+ Q + +N+IK LS++ A GQ
Sbjct: 38 SSVDVPLEPIKNIIEITKDENQQIEITKIAVNNIKTLSSVG-ATGQ 82
>d1j5pa3 d.81.1.3 (A:109-211) Hypothetical protein TM1643
{Thermotoga maritima [TaxId: 2336]}
Length = 103
Score = 25.1 bits (55), Expect = 5.3
Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 39 TIALALGQERTRGELI--PFLTETIY 62
TI L +G E+ + ++ P + I+
Sbjct: 60 TIGLIVGFEKVKVTIVADPAMDHNIH 85
>d1iq8a4 d.17.6.1 (A:361-505) Archaeosine tRNA-guanine
transglycosylase, C2 domain {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 145
Score = 25.1 bits (55), Expect = 7.0
Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 11/94 (11%)
Query: 10 DSLYPIAV-LIDELKNEDVQLRLNSIKKLSTIALALGQERTRGELIPFLTET-------- 60
YP A ++ + + ++IK + IA
Sbjct: 52 SLTYPFAQSEAEDDFKIEKPTKEDAIKYVMAIA-EYQFGEGASRAFDDAKVELSKTGMPR 110
Query: 61 -IYDEDEVLLALAEQLGTFTPNVGGPEYVHCLLP 93
+ + L + G T + G + +H +LP
Sbjct: 111 QVKVNGKRLATVRADDGLLTLGIEGAKRLHRVLP 144
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex,
superhelical domain {Lamprey (Ichthyomyzon unicuspis)
[TaxId: 30308]}
Length = 336
Score = 26.0 bits (57), Expect = 7.5
Identities = 37/161 (22%), Positives = 61/161 (37%), Gaps = 31/161 (19%)
Query: 63 DEDEVLLALAEQLGTFTPNVGGPE---YVHCLLPPLESLATVEETVVRDKAVESLRLISA 119
E+E++LAL + LG N G P + LP T V+ +A+ +LR I A
Sbjct: 185 KEEEIVLAL-KALG----NAGQPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNI-A 238
Query: 120 QHSPHDLEAHFVPLVQ--RLASGDWFTSRTSACGLFSVCYPRVTAGVKAELRSHFRNLCQ 177
+ P ++ +P+ + S R +C +F P L S +
Sbjct: 239 KRDPRKVQEIVLPIFLNVAIKS----ELRIRSCIVFFESKP------SVALVSMVAVRLR 288
Query: 178 DDTPMQQGHVWECGSGVKAELRSHFRNLCQDDTPMVRRAAA 218
+ +Q V + + S R+L + P R AA
Sbjct: 289 REPNLQ----------VASFVYSQMRSLSRSSNPEFRDVAA 319
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.392
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,111,936
Number of extensions: 48781
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 38
Length of query: 318
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 233
Effective length of database: 1,240,546
Effective search space: 289047218
Effective search space used: 289047218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.7 bits)