BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14016
(71 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZME|C Chain C, Integrated Structural And Functional Model Of The Human
Escrt-Ii Complex
pdb|2ZME|D Chain D, Integrated Structural And Functional Model Of The Human
Escrt-Ii Complex
Length = 102
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 39/57 (68%)
Query: 5 QWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFN 61
+WPWQY FPPFFTLQPN +TR+KQL AW LVL + + K + + EA + LF N
Sbjct: 6 EWPWQYRFPPFFTLQPNVDTRQKQLAAWCSLVLSFCRLHKQSSMTVMEAQESPLFNN 62
>pdb|3CUQ|C Chain C, Integrated Structural And Functional Model Of The Human
Escrt-Ii Complex
pdb|3CUQ|D Chain D, Integrated Structural And Functional Model Of The Human
Escrt-Ii Complex
Length = 176
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 41/64 (64%)
Query: 5 QWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFNPAI 64
+WPWQY FPPFFTLQPN +TR+KQL AW LVL + + K + + EA + LF N +
Sbjct: 6 EWPWQYRFPPFFTLQPNVDTRQKQLAAWCSLVLSFCRLHKQSSMTVMEAQESPLFNNVKL 65
Query: 65 SSIL 68
L
Sbjct: 66 QRKL 69
>pdb|1U5T|C Chain C, Structure Of The Escrt-Ii Endosomal Trafficking Complex
pdb|1U5T|D Chain D, Structure Of The Escrt-Ii Endosomal Trafficking Complex
pdb|1W7P|B Chain B, The Crystal Structure Of Endosomal Complex Escrt-Ii
(Vps22VPS25VPS36)
pdb|1W7P|C Chain C, The Crystal Structure Of Endosomal Complex Escrt-Ii
(Vps22VPS25VPS36)
pdb|1XB4|A Chain A, Crystal Structure Of Subunit Vps25 Of The Endosomal
Trafficking Complex Escrt-Ii
pdb|1XB4|B Chain B, Crystal Structure Of Subunit Vps25 Of The Endosomal
Trafficking Complex Escrt-Ii
pdb|1XB4|C Chain C, Crystal Structure Of Subunit Vps25 Of The Endosomal
Trafficking Complex Escrt-Ii
pdb|1XB4|D Chain D, Crystal Structure Of Subunit Vps25 Of The Endosomal
Trafficking Complex Escrt-Ii
Length = 202
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 10 YNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTK 44
Y+FPP +T QPN TR++Q+ W D++ +Y K K
Sbjct: 8 YSFPPLYTRQPNSLTRRQQISTWIDIISQYCKTKK 42
>pdb|1VQZ|A Chain A, Crystal Structure Of A Putative Lipoate-Protein Ligase A
(Sp_1160) From Streptococcus Pneumoniae Tigr4 At 1.99 A
Resolution
Length = 341
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 21 NEETRKKQLEAWRDLVLEYHKK 42
NE +K +E +RDL+LEY KK
Sbjct: 198 NELPKKITVEKFRDLLLEYXKK 219
>pdb|1K38|A Chain A, Crystal Structure Of The Class D Beta-Lactamase Oxa-2
pdb|1K38|B Chain B, Crystal Structure Of The Class D Beta-Lactamase Oxa-2
Length = 254
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 32 WRDLVLEYHKKTKTCIIDIQEADNTALFFNPAISSILYA 70
WR E+ K + D ++AD L F+P S Y+
Sbjct: 10 WRKFFSEFQAKGTIVVADERQADRAMLVFDPVRSKKRYS 48
>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|B Chain B, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|C Chain C, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|D Chain D, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHW|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHY|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
Length = 472
Score = 25.4 bits (54), Expect = 9.5, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 18 LQPNEETRKKQLEAWRDLVLEYHKKTKT 45
++ N++ + LE DL+++Y KK KT
Sbjct: 231 VKENQQEEARCLEEVEDLIVKYRKKKKT 258
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,201,590
Number of Sequences: 62578
Number of extensions: 68727
Number of successful extensions: 178
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 163
Number of HSP's gapped (non-prelim): 18
length of query: 71
length of database: 14,973,337
effective HSP length: 41
effective length of query: 30
effective length of database: 12,407,639
effective search space: 372229170
effective search space used: 372229170
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)