BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14016
(71 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6AX45|VPS25_XENLA Vacuolar protein-sorting-associated protein 25 OS=Xenopus laevis
GN=vps25 PE=2 SV=1
Length = 174
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 43/64 (67%)
Query: 5 QWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFNPAI 64
+WPWQYNFPPFFTLQPN +TR+KQL AW LVL Y ++ K +++ E + LF N I
Sbjct: 4 EWPWQYNFPPFFTLQPNVDTRQKQLSAWSSLVLSYCRQNKLYTMNLMEIQESPLFNNKKI 63
Query: 65 SSIL 68
L
Sbjct: 64 QRKL 67
>sp|Q6NWF4|VPS25_DANRE Vacuolar protein-sorting-associated protein 25 OS=Danio rerio
GN=vps25 PE=2 SV=2
Length = 174
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 43/64 (67%)
Query: 5 QWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFNPAI 64
+WPWQYNFPPFFTLQPN +TR+KQL AW LVL Y + K +D+ EA + +F N I
Sbjct: 4 EWPWQYNFPPFFTLQPNVDTRQKQLAAWCSLVLSYCRHRKLYTLDVLEAQESPVFNNKKI 63
Query: 65 SSIL 68
L
Sbjct: 64 ERKL 67
>sp|Q7JXV9|VPS25_DROME Vacuolar protein-sorting-associated protein 25 OS=Drosophila
melanogaster GN=Vps25 PE=2 SV=1
Length = 174
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 1 MSDVQWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFF 60
M++ QWPW+Y FPPFFTLQP+EETR++QL+ W DL L+Y + T + I + N+ LF
Sbjct: 1 MAEFQWPWEYTFPPFFTLQPHEETRQQQLKVWTDLFLKYLRHTNRFTLSIGD-QNSPLFH 59
Query: 61 NPAISSIL 68
N A+ L
Sbjct: 60 NEALKRRL 67
>sp|P0C0A1|VPS25_RAT Vacuolar protein-sorting-associated protein 25 OS=Rattus
norvegicus GN=Vps25 PE=1 SV=1
Length = 176
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 41/64 (64%)
Query: 5 QWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFNPAI 64
+WPWQY FPPFFTLQPN +TR+KQL AW LVL + + K + + EA + LF N +
Sbjct: 6 EWPWQYRFPPFFTLQPNVDTRQKQLAAWCSLVLSFCRLHKQSSMTVMEAQESPLFNNVKL 65
Query: 65 SSIL 68
L
Sbjct: 66 QRKL 69
>sp|Q9CQ80|VPS25_MOUSE Vacuolar protein-sorting-associated protein 25 OS=Mus musculus
GN=Vps25 PE=2 SV=1
Length = 176
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 41/64 (64%)
Query: 5 QWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFNPAI 64
+WPWQY FPPFFTLQPN +TR+KQL AW LVL + + K + + EA + LF N +
Sbjct: 6 EWPWQYRFPPFFTLQPNVDTRQKQLAAWCSLVLSFCRLHKQSSMTVMEAQESPLFNNVKL 65
Query: 65 SSIL 68
L
Sbjct: 66 QRKL 69
>sp|Q9BRG1|VPS25_HUMAN Vacuolar protein-sorting-associated protein 25 OS=Homo sapiens
GN=VPS25 PE=1 SV=1
Length = 176
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 41/64 (64%)
Query: 5 QWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFNPAI 64
+WPWQY FPPFFTLQPN +TR+KQL AW LVL + + K + + EA + LF N +
Sbjct: 6 EWPWQYRFPPFFTLQPNVDTRQKQLAAWCSLVLSFCRLHKQSSMTVMEAQESPLFNNVKL 65
Query: 65 SSIL 68
L
Sbjct: 66 QRKL 69
>sp|Q5E9A6|VPS25_BOVIN Vacuolar protein-sorting-associated protein 25 OS=Bos taurus
GN=VPS25 PE=2 SV=1
Length = 176
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 41/64 (64%)
Query: 5 QWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFNPAI 64
+WPWQY FPPFFTLQPN +TR+KQL AW LVL + + K + + EA + LF N +
Sbjct: 6 EWPWQYRFPPFFTLQPNVDTRQKQLAAWCSLVLTFCRLHKQSSMTVMEAQESPLFNNVKL 65
Query: 65 SSIL 68
L
Sbjct: 66 QRKL 69
>sp|Q8VZC9|VPS25_ARATH Vacuolar protein sorting-associated protein 25 OS=Arabidopsis
thaliana GN=VPS25 PE=1 SV=1
Length = 179
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 1 MSDVQWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFF 60
++D + P +N+PP+FTLQP +TR+KQ++ W++L+L+Y K K +I ++E + LF
Sbjct: 4 LADFKLPQFFNYPPYFTLQPVRDTREKQIQLWKELILDYCKSQKIFLIGVEE--DFPLFS 61
Query: 61 NPAISSIL 68
N AI L
Sbjct: 62 NSAIDRSL 69
>sp|Q55GD9|VPS25_DICDI Vacuolar protein-sorting-associated protein 25 OS=Dictyostelium
discoideum GN=vps25 PE=1 SV=1
Length = 194
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 5 QWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEA--DNTALFFNP 62
Q+P Y+ PFFT+QP TRKKQ + W+DL+L+Y + K +DI E+ N+ LF N
Sbjct: 7 QFPPYYHKEPFFTIQPILNTRKKQFQMWQDLILQYCRYYKIYELDINESIKSNSVLFNNE 66
Query: 63 AISSIL 68
I+ L
Sbjct: 67 KINRKL 72
>sp|P47142|VPS25_YEAST Vacuolar protein-sorting-associated protein 25 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS25 PE=1
SV=1
Length = 202
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 10 YNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTK 44
Y+FPP +T QPN TR++Q+ W D++ +Y K K
Sbjct: 8 YSFPPLYTRQPNSLTRRQQISTWIDIISQYCKTKK 42
>sp|O74967|VPS25_SCHPO Vacuolar protein-sorting-associated protein 25
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps25 PE=3 SV=1
Length = 175
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 10 YNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQ-EADNTALFFNPAISSIL 68
YNFPPFFT Q N+ T Q AW+ +L + ++ + I I E ++L N I L
Sbjct: 7 YNFPPFFTRQLNDNTWHSQKAAWQMWILLWCRENRQTSITINPELLESSLLHNSTIHRTL 66
>sp|B9KBC2|FMT_THENN Methionyl-tRNA formyltransferase OS=Thermotoga neapolitana (strain
ATCC 49049 / DSM 4359 / NS-E) GN=fmt PE=3 SV=1
Length = 313
Score = 28.9 bits (63), Expect = 9.9, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 9 QYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFNPAI 64
+ N PF T ++ K+ +E +++V+E+ +K + I ++E D+T + P I
Sbjct: 152 EVNIDPFETF---DQLEKRLIELSKEMVIEFLEKLENGEIHLREQDHTRATYAPLI 204
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,109,373
Number of Sequences: 539616
Number of extensions: 859708
Number of successful extensions: 2312
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2301
Number of HSP's gapped (non-prelim): 12
length of query: 71
length of database: 191,569,459
effective HSP length: 43
effective length of query: 28
effective length of database: 168,365,971
effective search space: 4714247188
effective search space used: 4714247188
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)