Query psy14016
Match_columns 71
No_of_seqs 102 out of 187
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 17:23:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14016.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14016hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4068|consensus 100.0 3.4E-35 7.4E-40 202.3 4.9 69 3-71 1-69 (174)
2 PF05871 ESCRT-II: ESCRT-II co 100.0 2.6E-35 5.6E-40 197.4 1.9 64 8-71 1-64 (139)
3 KOG2911|consensus 70.5 6 0.00013 31.4 3.5 31 20-50 33-63 (439)
4 PF03931 Skp1_POZ: Skp1 family 68.5 3 6.4E-05 23.7 1.1 11 34-44 51-61 (62)
5 KOG1724|consensus 55.3 7.8 0.00017 26.7 1.5 12 34-45 57-68 (162)
6 PF12854 PPR_1: PPR repeat 46.8 18 0.00039 18.0 1.7 16 30-45 8-23 (34)
7 smart00512 Skp1 Found in Skp1 40.5 19 0.00042 21.9 1.5 15 34-48 55-69 (104)
8 PF15630 CENP-S: Kinetochore c 37.9 35 0.00075 20.7 2.3 27 26-52 39-65 (76)
9 PF12856 Apc9: Anaphase-promot 36.1 42 0.0009 21.5 2.5 26 7-35 30-55 (100)
10 PF00922 Phosphoprotein: Vesic 31.4 51 0.0011 24.9 2.7 24 26-49 128-151 (283)
11 PF03617 IBV_3A: IBV 3A protei 31.0 46 0.001 19.4 1.9 16 29-44 13-28 (57)
12 TIGR00756 PPR pentatricopeptid 28.1 45 0.00098 15.0 1.3 15 31-45 2-16 (35)
13 PF02177 APP_N: Amyloid A4 N-t 26.0 39 0.00084 21.9 1.1 9 35-43 39-47 (102)
14 PF01535 PPR: PPR repeat; Int 24.1 50 0.0011 14.7 1.1 14 31-44 2-15 (31)
15 PF01843 DIL: DIL domain; Int 22.7 57 0.0012 19.8 1.4 26 22-47 26-51 (105)
16 PRK13679 hypothetical protein; 22.3 93 0.002 20.4 2.4 42 12-53 31-72 (168)
17 PF01510 Amidase_2: N-acetylmu 21.1 1.4E+02 0.003 18.1 2.9 23 24-46 88-110 (132)
18 PF13702 Lysozyme_like: Lysozy 20.1 1.2E+02 0.0026 20.9 2.7 21 27-47 3-23 (160)
No 1
>KOG4068|consensus
Probab=100.00 E-value=3.4e-35 Score=202.25 Aligned_cols=69 Identities=46% Similarity=0.897 Sum_probs=67.0
Q ss_pred CCCCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHhhCceeeeccCcCCCCCCCCccccccCCCC
Q psy14016 3 DVQWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFNPAISSILYAH 71 (71)
Q Consensus 3 ~f~~P~~y~fPPffT~Qpn~~Tr~kQl~~W~~lIl~y~~~~~~~~l~~~~~~~~~lF~N~~I~R~L~~e 71 (71)
.|+|||+|+||||||+|||.+||++|+++|++||++||||+|++.|+++++.+||||+|++|+|+||.|
T Consensus 1 ~f~wPw~Y~FPPffT~Qpn~~Tr~qQl~aW~~lil~ycr~~k~~smsI~~~~~s~LfnN~~l~R~Ls~~ 69 (174)
T KOG4068|consen 1 MFAWPWQYSFPPFFTRQPNSNTRQQQLAAWIDLILQYCRHNKIWSMSIDEAQESPLFNNEKLQRRLSQE 69 (174)
T ss_pred CCCCCcccCCCCceeecCCchhHHHHHHHHHHHHHHHHHhcCeEEEEecchhcccccchHHHhccCCHH
Confidence 489999999999999999999999999999999999999999999999999999999999999999964
No 2
>PF05871 ESCRT-II: ESCRT-II complex subunit; InterPro: IPR008570 This entry represents the vps25 subunit (vacuolar protein sorting-associated protein 25) of the endosome-associated complex ESCRT-II (Endosomal Sorting Complexes Required for Transport protein II). ESCRT (ESCRT-I, -II, -III) complexes orchestrate efficient sorting of ubiquitinated transmembrane receptors to lysosomes via multivesicular bodies (MVBs) []. ESCRT-II recruits the transport machinery for protein sorting at MVB []. In addition, the human ESCRT-II has been shown to form a complex with RNA polymerase II elongation factor ELL in order to exert transcriptional control activity. ESCRT-II transiently associates with the endosomal membrane and thereby initiates the formation of ESCRT-III, a membrane-associated protein complex that functions immediately downstream of ESCRT-II during sorting of MVB cargo. ESCRT-II in turn functions downstream of ESCRT-I, a protein complex that binds to ubiquitinated endosomal cargo []. ESCRT-II is a trilobal complex composed of two copies of vps25, one copy of vps22 and the C-terminal region of vps36. The crystal structure of vps25 revealed two winged-helix domains, the N-terminal domain of vps25 interacting with vps22 and vps35 [].; PDB: 1W7P_B 1U5T_D 1XB4_D 3HTU_E 3CUQ_C 2ZME_D.
Probab=100.00 E-value=2.6e-35 Score=197.44 Aligned_cols=64 Identities=50% Similarity=0.892 Sum_probs=56.8
Q ss_pred CCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHhhCceeeeccCcCCCCCCCCccccccCCCC
Q psy14016 8 WQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFNPAISSILYAH 71 (71)
Q Consensus 8 ~~y~fPPffT~Qpn~~Tr~kQl~~W~~lIl~y~~~~~~~~l~~~~~~~~~lF~N~~I~R~L~~e 71 (71)
|+|+||||||+|||++||++|+++|++|||+||||||+++|++.++.++|||+|++|||+|++|
T Consensus 1 ~~y~FPPFfT~Qpn~~Tr~~Ql~~W~~lIl~y~~~~k~~~l~~~e~~~~~lF~N~~I~R~L~~e 64 (139)
T PF05871_consen 1 WIYSFPPFFTLQPNPETREKQLELWSDLILDYCRHHKIFRLSLSEALESPLFNNESINRRLSPE 64 (139)
T ss_dssp GGGGSGGGGS--SSHHHHHHHHHHHHHHHHHHHHHTT-SEEECHHHHCCCTTEETTTTEE--HH
T ss_pred CccCCCCcceecCCHHHHHHHHHHHHHHHHHHHHHhceeeeecccccCCCCccCccccCCCCHH
Confidence 6899999999999999999999999999999999999999999988889999999999999864
No 3
>KOG2911|consensus
Probab=70.50 E-value=6 Score=31.43 Aligned_cols=31 Identities=32% Similarity=0.605 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhCceeeec
Q psy14016 20 PNEETRKKQLEAWRDLVLEYHKKTKTCIIDI 50 (71)
Q Consensus 20 pn~~Tr~kQl~~W~~lIl~y~~~~~~~~l~~ 50 (71)
-|++-+..=+..|.++|+.||+..+..++++
T Consensus 33 ~n~~gydak~~fWrdlI~~~s~~~g~~if~~ 63 (439)
T KOG2911|consen 33 LNPEGYDAKMNFWRDLILKYSRKSGRRIFLV 63 (439)
T ss_pred cChHhHHhHhhHHHHHHHHHhhhcCCeEeeH
Confidence 3567789999999999999999999988883
No 4
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=68.54 E-value=3 Score=23.70 Aligned_cols=11 Identities=27% Similarity=0.477 Sum_probs=8.9
Q ss_pred HHHHHHHHhhC
Q psy14016 34 DLVLEYHKKTK 44 (71)
Q Consensus 34 ~lIl~y~~~~~ 44 (71)
..|++||.||+
T Consensus 51 ~kViewc~~H~ 61 (62)
T PF03931_consen 51 KKVIEWCEHHK 61 (62)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 35899999986
No 5
>KOG1724|consensus
Probab=55.34 E-value=7.8 Score=26.65 Aligned_cols=12 Identities=42% Similarity=0.565 Sum_probs=10.1
Q ss_pred HHHHHHHHhhCc
Q psy14016 34 DLVLEYHKKTKT 45 (71)
Q Consensus 34 ~lIl~y~~~~~~ 45 (71)
.+|+.||+||+-
T Consensus 57 ~kVIewC~~Hk~ 68 (162)
T KOG1724|consen 57 KKVIEWCKKHKD 68 (162)
T ss_pred HHHHHHHHHccc
Confidence 469999999984
No 6
>PF12854 PPR_1: PPR repeat
Probab=46.79 E-value=18 Score=18.02 Aligned_cols=16 Identities=19% Similarity=0.341 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhhCc
Q psy14016 30 EAWRDLVLEYHKKTKT 45 (71)
Q Consensus 30 ~~W~~lIl~y~~~~~~ 45 (71)
-+|..||..|||.-++
T Consensus 8 ~ty~~lI~~~Ck~G~~ 23 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRV 23 (34)
T ss_pred hHHHHHHHHHHHCCCH
Confidence 3588999999998764
No 7
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=40.50 E-value=19 Score=21.94 Aligned_cols=15 Identities=20% Similarity=0.138 Sum_probs=12.0
Q ss_pred HHHHHHHHhhCceee
Q psy14016 34 DLVLEYHKKTKTCII 48 (71)
Q Consensus 34 ~lIl~y~~~~~~~~l 48 (71)
..|++||.+|+-+..
T Consensus 55 ~~Vi~yc~~h~~~~~ 69 (104)
T smart00512 55 SKVIEYCEHHVDDPP 69 (104)
T ss_pred HHHHHHHHHcccCCC
Confidence 579999999986643
No 8
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C.
Probab=37.86 E-value=35 Score=20.66 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHhhCceeeeccC
Q psy14016 26 KKQLEAWRDLVLEYHKKTKTCIIDIQE 52 (71)
Q Consensus 26 ~kQl~~W~~lIl~y~~~~~~~~l~~~~ 52 (71)
=+|++.|+.=+..+|+|-+--+|+.+|
T Consensus 39 ~~q~~~~a~DLe~FAkHA~R~tI~~dD 65 (76)
T PF15630_consen 39 YKQLENLAKDLEAFAKHAGRSTINMDD 65 (76)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SEE-HHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCeecHHH
Confidence 478999999999999999999998776
No 9
>PF12856 Apc9: Anaphase-promoting complex subunit 9; InterPro: IPR024274 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. All APC subunits are members of the cullin family proteins, which bind to a ring-finger subunit via a conserved cullin domain [].The APC can be divided in four parts, the third of which is a tetratricopeptide repeat arm (TPR) that contains multiple subunits, including Apc9 []. This entry represents Apc9, one of the subunits of the anaphase-promoting complex.
Probab=36.07 E-value=42 Score=21.54 Aligned_cols=26 Identities=23% Similarity=0.594 Sum_probs=20.5
Q ss_pred CCCCCCCCCccccCCHHHHHHHHHHHHHH
Q psy14016 7 PWQYNFPPFFTLQPNEETRKKQLEAWRDL 35 (71)
Q Consensus 7 P~~y~fPPffT~Qpn~~Tr~kQl~~W~~l 35 (71)
..-|+|-||..- ...|+.|+.+|-+-
T Consensus 30 ~~~YDYs~F~~~---~~l~eSkI~~~l~s 55 (100)
T PF12856_consen 30 NSKYDYSPFSDK---NTLRESKIKAWLSS 55 (100)
T ss_pred cCCCCcccccch---hHHHHHHHHHHHHH
Confidence 567999999665 44899999999753
No 10
>PF00922 Phosphoprotein: Vesiculovirus phosphoprotein; InterPro: IPR000224 This entry contains phosphoprotein from vesiculoviruses, which are ssRNA negative-strand rhabdoviruses. It is known as the phosphoprotein or P protein [, ]. This protein may be part of the RNA dependent RNA polymerase complex []. The phosphorylation states of this protein may regulate the transcription and replication complexes [].; GO: 0003968 RNA-directed RNA polymerase activity; PDB: 2K47_A 3PMK_R 2FQM_F 3HHZ_C 3HHW_D.
Probab=31.36 E-value=51 Score=24.90 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHhhCceeee
Q psy14016 26 KKQLEAWRDLVLEYHKKTKTCIID 49 (71)
Q Consensus 26 ~kQl~~W~~lIl~y~~~~~~~~l~ 49 (71)
..|+.+|.+=|.+.|..-|-|+|.
T Consensus 128 ~~Q~~QW~~tI~Al~~sskywnL~ 151 (283)
T PF00922_consen 128 PEQLSQWTSTIEALVQSSKYWNLS 151 (283)
T ss_dssp HHHHHHHHHHHHHHHHHCCCS-GG
T ss_pred HHHHHHHHHHHHHHHHHhcCccee
Confidence 479999999999999888888763
No 11
>PF03617 IBV_3A: IBV 3A protein ; InterPro: IPR005214 The gene product of gene 3 from Infectious bronchitis virus (strain CL190). Currently, the function of this protein remains unknown.
Probab=31.00 E-value=46 Score=19.38 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHhhC
Q psy14016 29 LEAWRDLVLEYHKKTK 44 (71)
Q Consensus 29 l~~W~~lIl~y~~~~~ 44 (71)
+-.|+.|+++.+|+--
T Consensus 13 illwcklvlscf~ecv 28 (57)
T PF03617_consen 13 ILLWCKLVLSCFRECV 28 (57)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4589999999988653
No 12
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=28.15 E-value=45 Score=14.99 Aligned_cols=15 Identities=13% Similarity=0.233 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhhCc
Q psy14016 31 AWRDLVLEYHKKTKT 45 (71)
Q Consensus 31 ~W~~lIl~y~~~~~~ 45 (71)
.|..+|..||+..+.
T Consensus 2 ~~n~li~~~~~~~~~ 16 (35)
T TIGR00756 2 TYNTLIDGLCKAGRV 16 (35)
T ss_pred cHHHHHHHHHHCCCH
Confidence 588899999987653
No 13
>PF02177 APP_N: Amyloid A4 N-terminal heparin-binding; InterPro: IPR015849 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. This entry represents a heparin-binding domain found at the N-terminal of the extracellular domain, which is itself found at the N-terminal of amyloidogenic glycoproteins such as amyloid-beta precursor protein (APP, or A4). The core of the heparin-binding domain has an unusual disulphide-rich fold, consisting of a beta-x-alpha-beta-loop-beta topology []. More information about these protein can be found at Protein of the Month: Amyloid-beta Precursor Protein [].; GO: 0005488 binding, 0016021 integral to membrane; PDB: 3KTM_E 1MWP_A 2FKL_A 1OWT_A.
Probab=25.98 E-value=39 Score=21.85 Aligned_cols=9 Identities=33% Similarity=0.663 Sum_probs=7.2
Q ss_pred HHHHHHHhh
Q psy14016 35 LVLEYHKKT 43 (71)
Q Consensus 35 lIl~y~~~~ 43 (71)
=||+|||.-
T Consensus 39 eIL~YCrkv 47 (102)
T PF02177_consen 39 EILKYCRKV 47 (102)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 589999764
No 14
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=24.07 E-value=50 Score=14.72 Aligned_cols=14 Identities=21% Similarity=0.439 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhhC
Q psy14016 31 AWRDLVLEYHKKTK 44 (71)
Q Consensus 31 ~W~~lIl~y~~~~~ 44 (71)
.|..+|-.||+...
T Consensus 2 ~y~~li~~~~~~~~ 15 (31)
T PF01535_consen 2 TYNSLISGYCKMGQ 15 (31)
T ss_pred cHHHHHHHHHccch
Confidence 58889999987655
No 15
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=22.73 E-value=57 Score=19.84 Aligned_cols=26 Identities=4% Similarity=-0.096 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCcee
Q psy14016 22 EETRKKQLEAWRDLVLEYHKKTKTCI 47 (71)
Q Consensus 22 ~~Tr~kQl~~W~~lIl~y~~~~~~~~ 47 (71)
.-++..|+...-+.|.+||+.+++-.
T Consensus 26 ~~~~g~qi~~nls~l~~W~~~~~l~~ 51 (105)
T PF01843_consen 26 SWSKGVQIRYNLSELEDWARSHGLEE 51 (105)
T ss_dssp -HHHHHHHHHHHHHHHHCCCCTTSTT
T ss_pred ccccHHHHHHHHHHHHHHHHhcccch
Confidence 35688999999999999999888654
No 16
>PRK13679 hypothetical protein; Provisional
Probab=22.26 E-value=93 Score=20.41 Aligned_cols=42 Identities=21% Similarity=0.337 Sum_probs=34.8
Q ss_pred CCCCccccCCHHHHHHHHHHHHHHHHHHHHhhCceeeeccCc
Q psy14016 12 FPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEA 53 (71)
Q Consensus 12 fPPffT~Qpn~~Tr~kQl~~W~~lIl~y~~~~~~~~l~~~~~ 53 (71)
.||..|++.--++-..|++...+.+-+.|+..+-+.+.+++.
T Consensus 31 v~pHITL~f~g~~~~~~~~~l~~~l~~~~~~~~pf~l~l~~~ 72 (168)
T PRK13679 31 IPPHITLKEPFEISDEQLDSIVEELRAIASETKPFTLHVTKV 72 (168)
T ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecc
Confidence 588999986445557789999999999999889899988775
No 17
>PF01510 Amidase_2: N-acetylmuramoyl-L-alanine amidase; InterPro: IPR002502 Proteins families containing this domain include zinc amidases that have N-acetylmuramoyl-L-alanine amidase activity 3.5.1.28 from EC This enzyme domain cleaves the amide bond between N-acetylmuramoyl and L-amino acids in bacterial cell walls (preferentially: D-lactyl-L-Ala). The structure is known for the Bacteriophage T7 structure and shows that two of the conserved histidines are zinc binding.; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity, 0009253 peptidoglycan catabolic process; PDB: 2RKQ_A 2EAV_A 2EAX_B 2XZ4_A 3TRU_A 3NKW_B 3QS0_B 3NW3_C 2Z9N_C 3NNO_B ....
Probab=21.07 E-value=1.4e+02 Score=18.09 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCce
Q psy14016 24 TRKKQLEAWRDLVLEYHKKTKTC 46 (71)
Q Consensus 24 Tr~kQl~~W~~lIl~y~~~~~~~ 46 (71)
-=+.|+++-..|+...|+.+++-
T Consensus 88 ~t~~Q~~a~~~L~~~l~~~~~i~ 110 (132)
T PF01510_consen 88 PTDAQIEALARLIADLCRRYGIP 110 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHHHHHHHHHHHCCcC
Confidence 34689999999999999999866
No 18
>PF13702 Lysozyme_like: Lysozyme-like
Probab=20.12 E-value=1.2e+02 Score=20.86 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHhhCcee
Q psy14016 27 KQLEAWRDLVLEYHKKTKTCI 47 (71)
Q Consensus 27 kQl~~W~~lIl~y~~~~~~~~ 47 (71)
++...|..+|-+||+.+.+-.
T Consensus 3 ~~V~~y~~~V~k~a~e~gi~~ 23 (160)
T PF13702_consen 3 EEVLQYRPMVEKYAKEYGIPE 23 (160)
T ss_pred HHHHHHHHHHHHHHHHcCChh
Confidence 577899999999999998754
Done!