Query psy14016
Match_columns 71
No_of_seqs 102 out of 187
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 17:23:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14016.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14016hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cuq_C Vacuolar protein-sortin 100.0 6.9E-39 2.3E-43 220.6 2.9 71 1-71 2-72 (176)
2 1xb4_A VPS25, hypothetical 23. 100.0 5.3E-36 1.8E-40 209.8 4.8 67 5-71 3-88 (202)
3 3htu_A Vacuolar protein-sortin 66.2 3.9 0.00013 24.3 2.3 18 29-46 7-24 (79)
4 1hv2_A Elongin C, ELC1; protei 41.5 9.7 0.00033 22.6 1.1 13 34-46 55-67 (99)
5 2fnj_C Transcription elongatio 36.5 13 0.00044 21.8 1.1 13 34-46 55-67 (96)
6 1vcb_B Protein (elongin C); tu 34.6 14 0.00049 22.5 1.1 13 34-46 71-83 (112)
7 3v7d_A Suppressor of kinetocho 34.4 18 0.00061 23.4 1.6 13 35-47 64-76 (169)
8 4ajy_C Transcription elongatio 33.3 16 0.00054 21.2 1.1 13 34-46 56-68 (97)
9 1fs1_B SKP1, cyclin A/CDK2-ass 29.7 24 0.00081 21.9 1.6 14 34-47 50-63 (141)
10 3cg6_A Growth arrest and DNA-d 25.9 71 0.0024 20.9 3.4 24 29-52 61-84 (146)
11 1mwp_A Amyloid A4 protein; hep 25.9 25 0.00085 21.6 1.1 9 34-42 40-48 (96)
12 3ffm_A Growth arrest and DNA-d 25.5 71 0.0024 21.4 3.4 23 30-52 83-105 (167)
13 2fqm_A Phosphoprotein, P prote 24.6 47 0.0016 19.6 2.1 24 26-49 30-53 (75)
14 1yfn_E Sigma-E factor negative 24.1 77 0.0026 15.8 2.8 23 18-40 2-29 (32)
15 2ast_A S-phase kinase-associat 21.2 43 0.0015 21.0 1.6 14 34-47 55-68 (159)
16 1aoc_A Coagulogen; coagulation 20.5 26 0.00089 23.3 0.4 6 10-15 76-81 (175)
No 1
>3cuq_C Vacuolar protein-sorting-associated protein 25; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_C
Probab=100.00 E-value=6.9e-39 Score=220.56 Aligned_cols=71 Identities=45% Similarity=0.850 Sum_probs=67.1
Q ss_pred CCCCCCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHhhCceeeeccCcCCCCCCCCccccccCCCC
Q psy14016 1 MSDVQWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFNPAISSILYAH 71 (71)
Q Consensus 1 ~~~f~~P~~y~fPPffT~Qpn~~Tr~kQl~~W~~lIl~y~~~~~~~~l~~~~~~~~~lF~N~~I~R~L~~e 71 (71)
|++|+||++|+||||||+|||.+||++|+++|++|||+||||||+++|++.++.++|||+|++|+|+||+|
T Consensus 2 ~~~f~~P~~y~FPPFfTlQpn~~Tr~kQl~~W~~LIl~ycr~~k~~~l~~~~~~~~pLF~N~~I~R~Ls~e 72 (176)
T 3cuq_C 2 AMSFEWPWQYRFPPFFTLQPNVDTRQKQLAAWCSLVLSFCRLHKQSSMTVMEAQESPLFNNVKLQRKLPVE 72 (176)
T ss_dssp --CCCCCGGGGSGGGGSCCSSHHHHHHHHHHHHHHHHHHHHHHTCCEEEHHHHHTSTTSEETTTTEECCHH
T ss_pred CCCCCCCcccCCCCeeeecCCHHHHHHHHHHHHHHHHHHHHHhCeeEeeccccccCCCcCCccccCcCCHH
Confidence 56899999999999999999999999999999999999999999999999988889999999999999964
No 2
>1xb4_A VPS25, hypothetical 23.6 kDa protein in YUH1-URA8 intergenic region; winged helix, unknown function; 3.10A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_B 1u5t_C
Probab=100.00 E-value=5.3e-36 Score=209.79 Aligned_cols=67 Identities=31% Similarity=0.561 Sum_probs=63.8
Q ss_pred CCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHhhCceeeeccCcCCC-------------------CCCCCcccc
Q psy14016 5 QWPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNT-------------------ALFFNPAIS 65 (71)
Q Consensus 5 ~~P~~y~fPPffT~Qpn~~Tr~kQl~~W~~lIl~y~~~~~~~~l~~~~~~~~-------------------~lF~N~~I~ 65 (71)
+||++|+||||||+|||.+||++||++|++|||+||||||+++|+++++.++ |||+|++||
T Consensus 3 ~~P~~ysFPPFfTlQPn~~Tr~~Ql~~W~~LIL~ycr~~ki~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pLF~N~~I~ 82 (202)
T 1xb4_A 3 ALPPVYSFPPLYTRQPNSLTRRQQISTWIDIISQYCKTKKIWYMSVDGTVINDNELDSGSTDNDDSKKISKNLFNNEDIQ 82 (202)
T ss_dssp CSCSGGGCGGGTSCCSCHHHHHHHHHHHHHHHHHHHHHTTCCEEETTSBBCCC-----------------CBTTEETTTT
T ss_pred CCCCccCCCCccccCCCHHHHHHHHHHHHHHHHHHHHHhCeeEeccccccccccccccccccccccccccCCCcCCcccc
Confidence 6999999999999999999999999999999999999999999999986665 999999999
Q ss_pred ccCCCC
Q psy14016 66 SILYAH 71 (71)
Q Consensus 66 R~L~~e 71 (71)
|+|++|
T Consensus 83 RrLs~e 88 (202)
T 1xb4_A 83 RSVSQV 88 (202)
T ss_dssp EECCHH
T ss_pred CcCCHH
Confidence 999964
No 3
>3htu_A Vacuolar protein-sorting-associated protein 25; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=66.25 E-value=3.9 Score=24.32 Aligned_cols=18 Identities=17% Similarity=0.506 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhhCce
Q psy14016 29 LEAWRDLVLEYHKKTKTC 46 (71)
Q Consensus 29 l~~W~~lIl~y~~~~~~~ 46 (71)
.+.|+++|.+|++..+.-
T Consensus 7 peeWa~~Iy~Wv~~~G~~ 24 (79)
T 3htu_A 7 PEEWGKLIYQWVSRSGQN 24 (79)
T ss_dssp HHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 578999999999998854
No 4
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=41.45 E-value=9.7 Score=22.57 Aligned_cols=13 Identities=15% Similarity=0.225 Sum_probs=10.3
Q ss_pred HHHHHHHHhhCce
Q psy14016 34 DLVLEYHKKTKTC 46 (71)
Q Consensus 34 ~lIl~y~~~~~~~ 46 (71)
..|++||.+|+-.
T Consensus 55 ~kVieyc~~h~~~ 67 (99)
T 1hv2_A 55 EKAVEYLNYNLKY 67 (99)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc
Confidence 4589999999854
No 5
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=36.45 E-value=13 Score=21.82 Aligned_cols=13 Identities=15% Similarity=0.046 Sum_probs=10.2
Q ss_pred HHHHHHHHhhCce
Q psy14016 34 DLVLEYHKKTKTC 46 (71)
Q Consensus 34 ~lIl~y~~~~~~~ 46 (71)
..|++||.+|+-.
T Consensus 55 ~kVieyc~~h~~~ 67 (96)
T 2fnj_C 55 SKVCMYFTYKVRY 67 (96)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccc
Confidence 4589999999854
No 6
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=34.58 E-value=14 Score=22.46 Aligned_cols=13 Identities=15% Similarity=0.046 Sum_probs=10.3
Q ss_pred HHHHHHHHhhCce
Q psy14016 34 DLVLEYHKKTKTC 46 (71)
Q Consensus 34 ~lIl~y~~~~~~~ 46 (71)
..|+.||.+|+-.
T Consensus 71 ~kVieyc~~h~~~ 83 (112)
T 1vcb_B 71 SKVCMYFTYKVRY 83 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhc
Confidence 4589999999854
No 7
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=34.44 E-value=18 Score=23.41 Aligned_cols=13 Identities=15% Similarity=0.322 Sum_probs=10.6
Q ss_pred HHHHHHHhhCcee
Q psy14016 35 LVLEYHKKTKTCI 47 (71)
Q Consensus 35 lIl~y~~~~~~~~ 47 (71)
.|+.||.||+-..
T Consensus 64 kVieyc~~h~~~~ 76 (169)
T 3v7d_A 64 KVIEWAEHHRDSN 76 (169)
T ss_dssp HHHHHHHHTTTCC
T ss_pred HHHHHHHHcccCC
Confidence 5899999998653
No 8
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=33.33 E-value=16 Score=21.24 Aligned_cols=13 Identities=15% Similarity=0.046 Sum_probs=10.2
Q ss_pred HHHHHHHHhhCce
Q psy14016 34 DLVLEYHKKTKTC 46 (71)
Q Consensus 34 ~lIl~y~~~~~~~ 46 (71)
..|++||.||+-.
T Consensus 56 ~kViey~~~h~~~ 68 (97)
T 4ajy_C 56 SKVCMYFTYKVRY 68 (97)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc
Confidence 4689999988754
No 9
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=29.65 E-value=24 Score=21.92 Aligned_cols=14 Identities=14% Similarity=0.166 Sum_probs=11.0
Q ss_pred HHHHHHHHhhCcee
Q psy14016 34 DLVLEYHKKTKTCI 47 (71)
Q Consensus 34 ~lIl~y~~~~~~~~ 47 (71)
..|++||.+|+-..
T Consensus 50 ~kVieyc~~h~~~~ 63 (141)
T 1fs1_B 50 KKVIQWCTHHKDDP 63 (141)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhccCC
Confidence 46899999999543
No 10
>3cg6_A Growth arrest and DNA-damage-inducible 45 gamma; alpha/beta, cell cycle; 1.70A {Mus musculus} PDB: 2wal_A
Probab=25.91 E-value=71 Score=20.89 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhhCceeeeccC
Q psy14016 29 LEAWRDLVLEYHKKTKTCIIDIQE 52 (71)
Q Consensus 29 l~~W~~lIl~y~~~~~~~~l~~~~ 52 (71)
+..-..||-.+|..|.|..|.+++
T Consensus 61 ~~~y~kLveAlC~E~~I~lIkVdd 84 (146)
T 3cg6_A 61 LQIHFTLIQAFCCENDIDIVRVGD 84 (146)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHHHhhcCCCeEEeCc
Confidence 345678999999999999998876
No 11
>1mwp_A Amyloid A4 protein; heparin binding, sugar binding protein; 1.80A {Homo sapiens} SCOP: d.170.2.1
Probab=25.90 E-value=25 Score=21.63 Aligned_cols=9 Identities=22% Similarity=0.604 Sum_probs=7.0
Q ss_pred HHHHHHHHh
Q psy14016 34 DLVLEYHKK 42 (71)
Q Consensus 34 ~lIl~y~~~ 42 (71)
.=||+|||.
T Consensus 40 ~eIL~YCrk 48 (96)
T 1mwp_A 40 EGILQYCQE 48 (96)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 358999975
No 12
>3ffm_A Growth arrest and DNA-damage-inducible protein GADD45 gamma; beta-turn-helix, cell cycle; 2.30A {Homo sapiens}
Probab=25.52 E-value=71 Score=21.40 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhhCceeeeccC
Q psy14016 30 EAWRDLVLEYHKKTKTCIIDIQE 52 (71)
Q Consensus 30 ~~W~~lIl~y~~~~~~~~l~~~~ 52 (71)
..-..||-++|..|.|..|.+++
T Consensus 83 qmy~kLVeAlC~E~~I~LIkV~d 105 (167)
T 3ffm_A 83 QIHFTLIQAFCCENDIDIVRVGD 105 (167)
T ss_dssp HHHHHHHHHHHHHTTCEEEEESC
T ss_pred HHHHHHHHHHHhhcCCCeEEeCC
Confidence 35678999999999999998876
No 13
>2fqm_A Phosphoprotein, P protein; negative strand RNA virus, polymerase, replication, cofactor, viral protein; 2.30A {Vesicular stomatitis indiana virus} SCOP: d.378.1.1
Probab=24.61 E-value=47 Score=19.56 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHhhCceeee
Q psy14016 26 KKQLEAWRDLVLEYHKKTKTCIID 49 (71)
Q Consensus 26 ~kQl~~W~~lIl~y~~~~~~~~l~ 49 (71)
.-|-++|..-|-+.|..-|-|.|+
T Consensus 30 ~~Q~~QW~~TIeav~qSakyWNla 53 (75)
T 2fqm_A 30 GEQKSQWMLTIKAVVQSAKHWNLA 53 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCGG
T ss_pred HHHHHHHHHHHHHHHhhhcccchh
Confidence 458899999999999888877663
No 14
>1yfn_E Sigma-E factor negative regulatory protein; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli}
Probab=24.11 E-value=77 Score=15.77 Aligned_cols=23 Identities=17% Similarity=0.409 Sum_probs=17.6
Q ss_pred ccCCHHHHHH-----HHHHHHHHHHHHH
Q psy14016 18 LQPNEETRKK-----QLEAWRDLVLEYH 40 (71)
Q Consensus 18 ~Qpn~~Tr~k-----Ql~~W~~lIl~y~ 40 (71)
-||.++++++ .+.-|.+-+..+.
T Consensus 2 sQP~p~~w~~~pfw~kvrpw~sqltQvg 29 (32)
T 1yfn_E 2 AQPAPHQWQKMPFWQKVRPWAAQLTQMG 29 (32)
T ss_pred CCCChHHHHhChHHHHhhHHHHHHHHHH
Confidence 3888888887 7888887776654
No 15
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=21.25 E-value=43 Score=20.98 Aligned_cols=14 Identities=14% Similarity=0.166 Sum_probs=11.2
Q ss_pred HHHHHHHHhhCcee
Q psy14016 34 DLVLEYHKKTKTCI 47 (71)
Q Consensus 34 ~lIl~y~~~~~~~~ 47 (71)
..|++||.+|+-..
T Consensus 55 ~kViey~~~h~~~~ 68 (159)
T 2ast_A 55 KKVIQWCTHHKDDP 68 (159)
T ss_dssp HHHHHHHHHTTTCC
T ss_pred HHHHHHHHHcCcCC
Confidence 56999999999554
No 16
>1aoc_A Coagulogen; coagulation factor, clottable protein, cystine knot superfamily; 2.00A {Tachypleus tridentatus} SCOP: g.17.1.5
Probab=20.53 E-value=26 Score=23.31 Aligned_cols=6 Identities=100% Similarity=2.261 Sum_probs=3.9
Q ss_pred CCCCCC
Q psy14016 10 YNFPPF 15 (71)
Q Consensus 10 y~fPPf 15 (71)
|+||||
T Consensus 76 ynf~pf 81 (175)
T 1aoc_A 76 YNFPPF 81 (175)
T ss_dssp GGSTTC
T ss_pred ecCCCc
Confidence 666666
Done!