RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14016
         (71 letters)



>d1xb4a1 a.4.5.54 (A:2-125) Vacuolar protein sorting-associated
          protein VPS25 {Baker's yeast (Saccharomyces cerevisiae)
          [TaxId: 4932]}
          Length = 124

 Score = 72.8 bits (178), Expect = 3e-19
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 6  WPWQYNFPPFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEA 53
           P  Y+FPP +T QPN  TR++Q+  W D++ +Y K  K   + +   
Sbjct: 3  LPPVYSFPPLYTRQPNSLTRRQQISTWIDIISQYCKTKKIWYMSVDGT 50


>d1i3ja_ d.285.1.1 (A:) DNA-binding domain of intron endonuclease
          I-TevI {Bacteriophage T4 [TaxId: 10665]}
          Length = 96

 Score = 27.9 bits (62), Expect = 0.040
 Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 6/59 (10%)

Query: 14 PFFTLQPNEETRKKQLEAWRDLVLEYHKKTKTCIIDIQEADNT---ALFFNPAISSILY 69
           FF  + ++ T+ K  E  +    +     K    D    D     A  F  +   + Y
Sbjct: 28 SFFNHKHSDITKSKISEKMKG---KKPSNIKKISCDGVIFDCAADAARHFKISSGLVTY 83


>d1r5qa_ a.186.1.1 (A:) Circadian clock protein KaiA, C-terminal
          domain {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId:
          103690]}
          Length = 98

 Score = 26.6 bits (59), Expect = 0.13
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 4/54 (7%)

Query: 22 EETRKKQLEA----WRDLVLEYHKKTKTCIIDIQEADNTALFFNPAISSILYAH 71
          E  ++  L+     +R ++L Y    K     I +  N     N  +  I+  H
Sbjct: 1  EVDQQILLQQLKSDYRQILLSYFTTDKALKEKIDKFINAVFCANIPVPEIIEIH 54


>d1r8ja1 a.186.1.1 (A:177-282) Circadian clock protein KaiA,
          C-terminal domain {Synechococcus elongatus PCC 7942
          [TaxId: 1140]}
          Length = 106

 Score = 26.2 bits (58), Expect = 0.21
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 15 FFTLQPNEETRK--KQLEA-WRDLVLEYHKKTKTCIIDIQEADNTALFFNPAISSILYAH 71
          F    P  E++K  + ++  +R++VL Y          I    N A F +  ++ ++  H
Sbjct: 2  FLRNLPAYESQKLHQAMQTSYREIVLSYFSPNSNLNQSIDNFVNMAFFADVPVTKVVEIH 61


>d1v2za_ a.186.1.1 (A:) Circadian clock protein KaiA, C-terminal
          domain {Thermosynechococcus elongatus bp-1 [TaxId:
          197221]}
          Length = 106

 Score = 26.2 bits (58), Expect = 0.24
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 15 FFTLQPNEETRK--KQLEA-WRDLVLEYHKKTKTCIIDIQEADNTALFFNPAISSILYAH 71
          FF      + RK   +L + +R +VLEY          I E  + A F + ++S +L  H
Sbjct: 5  FFRRMSPADKRKLLDELRSIYRTIVLEYFNTDAKVNERIDEFVSKAFFADISVSQVLEIH 64


>d1qh4a2 d.128.1.2 (A:103-381) Creatine kinase, C-terminal domain
           {Chicken (Gallus gallus), brain-type [TaxId: 9031]}
          Length = 279

 Score = 25.3 bits (55), Expect = 0.76
 Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 4/67 (5%)

Query: 9   QYNFPPFFTLQPNEETRKKQLEA----WRDLVLEYHKKTKTCIIDIQEADNTALFFNPAI 64
            +  PP  +        K  +EA      DL  +Y+        + Q+  +    F+  +
Sbjct: 37  GFCLPPHCSRGERRAIEKLSVEALGSLGGDLKGKYYALRNMTDAEQQQLIDDHFLFDKPV 96

Query: 65  SSILYAH 71
           S +L A 
Sbjct: 97  SPLLLAS 103


>d1k38a_ e.3.1.1 (A:) Class D beta-lactamase {Salmonella
          typhimurium, OXA-2 [TaxId: 90371]}
          Length = 241

 Score = 24.4 bits (52), Expect = 1.3
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 28 QLEAWRDLVLEYHKKTKTCIIDIQEADNTALFFNPAISSILYA 70
          +   WR    E+  K    + D ++AD   L F+P  S   Y+
Sbjct: 3  ERSDWRKFFSEFQAKGTIVVADERQADRAMLVFDPVRSKKRYS 45


>d3boea1 c.154.1.1 (A:224-432) Cadmium-specific carbonic anhydrase
           CdCA1 {Thalassiosira weissflogii [TaxId: 67004]}
          Length = 209

 Score = 23.3 bits (50), Expect = 3.2
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 11  NFPPFFTLQPNEETRKKQLEAW 32
           N     TL+PNE  ++  ++ W
Sbjct: 154 NLLANKTLEPNENDQRFIVDGW 175


>d1mbya_ d.223.1.1 (A:) Serine/threonine-protein kinase Sak
          C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 75

 Score = 22.8 bits (49), Expect = 3.3
 Identities = 7/25 (28%), Positives = 11/25 (44%)

Query: 47 IIDIQEADNTALFFNPAISSILYAH 71
           + +Q  D + L     +SSI Y  
Sbjct: 17 AVWVQFNDGSQLVMQAGVSSISYTS 41


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.134    0.440 

Gapped
Lambda     K      H
   0.267   0.0516    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 273,243
Number of extensions: 9812
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 15
Length of query: 71
Length of database: 2,407,596
Length adjustment: 39
Effective length of query: 32
Effective length of database: 1,872,126
Effective search space: 59908032
Effective search space used: 59908032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.4 bits)