BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14017
(115 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C5W|A Chain A, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 232
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 49/61 (80%)
Query: 54 IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
++E CG +T +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+KL
Sbjct: 151 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 210
Query: 114 N 114
Sbjct: 211 T 211
>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|D Chain D, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 582
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 49/61 (80%)
Query: 54 IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
++E CG +T +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+KL
Sbjct: 501 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 560
Query: 114 N 114
Sbjct: 561 T 561
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVR----FNVAKTLQKIG 94
+S +R + +++ +A GP +T L+P N+ D A VR V + + +
Sbjct: 248 KSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLS 307
Query: 95 PILETNVIQSQVKPALDKL 113
NVI SQ+ P + +L
Sbjct: 308 ADCRENVIMSQILPCIKEL 326
>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
pdb|2PKG|B Chain B, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
Length = 580
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 49/61 (80%)
Query: 54 IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
++E CG +T +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+KL
Sbjct: 499 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 558
Query: 114 N 114
Sbjct: 559 T 559
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVR----FNVAKTLQKIG 94
+S +R + +++ +A GP +T L+P N+ D A VR V + + +
Sbjct: 246 KSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLS 305
Query: 95 PILETNVIQSQVKPALDKL 113
NVI SQ+ P + +L
Sbjct: 306 ADCRENVIMSQILPCIKEL 324
>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Tumor- Inducing Toxins
pdb|2IE4|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Okadaic Acid
pdb|2NPP|A Chain A, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|D Chain D, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|3K7V|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-1
pdb|3K7W|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-2
Length = 589
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 49/61 (80%)
Query: 54 IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
++E CG +T +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+KL
Sbjct: 508 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 567
Query: 114 N 114
Sbjct: 568 T 568
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVR----FNVAKTLQKIG 94
+S +R + +++ +A GP +T L+P N+ D A VR V + + +
Sbjct: 255 KSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLS 314
Query: 95 PILETNVIQSQVKPALDKL 113
NVI SQ+ P + +L
Sbjct: 315 ADCRENVIMSQILPCIKEL 333
>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
pdb|1B3U|B Chain B, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
Length = 588
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 49/61 (80%)
Query: 54 IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
++E CG +T +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+KL
Sbjct: 507 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 566
Query: 114 N 114
Sbjct: 567 T 567
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVR----FNVAKTLQKIG 94
+S +R + +++ +A GP +T L+P N+ D A VR V + + +
Sbjct: 254 KSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLS 313
Query: 95 PILETNVIQSQVKPALDKL 113
NVI SQ+ P + +L
Sbjct: 314 ADCRENVIMSQILPCIKEL 332
>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|D Chain D, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2PF4|A Chain A, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|B Chain B, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|C Chain C, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|D Chain D, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
Length = 589
Score = 86.3 bits (212), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 49/61 (80%)
Query: 54 IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
++E CG +T +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+KL
Sbjct: 508 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 567
Query: 114 N 114
Sbjct: 568 T 568
Score = 32.0 bits (71), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVR----FNVAKTLQKIG 94
+S +R + +++ +A GP +T L+P N+ D A VR V + + +
Sbjct: 255 KSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLS 314
Query: 95 PILETNVIQSQVKPALDKL 113
NVI +Q+ P + +L
Sbjct: 315 ADCRENVIMTQILPCIKEL 333
>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction
Length = 588
Score = 86.3 bits (212), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 49/61 (80%)
Query: 54 IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
++E CG +T +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+KL
Sbjct: 507 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 566
Query: 114 N 114
Sbjct: 567 T 567
Score = 32.0 bits (71), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVR----FNVAKTLQKIG 94
+S +R + +++ +A GP +T L+P N+ D A VR V + + +
Sbjct: 254 KSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLS 313
Query: 95 PILETNVIQSQVKPALDKL 113
NVI +Q+ P + +L
Sbjct: 314 ADCRENVIMTQILPCIKEL 332
>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 582
Score = 80.9 bits (198), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/60 (63%), Positives = 47/60 (78%)
Query: 54 IAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
++E CG +T LPTVL AGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+KL
Sbjct: 501 LSEVCGQDITTKHXLPTVLRXAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 560
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 52 SQIAEACGPTVTANFLLPTVLNMAGDNVANVR----FNVAKTLQKIGPILETNVIQSQVK 107
+++ +A GP +T L+P N+ D A VR V + + + NVI SQ+
Sbjct: 261 TELQKAVGPEITKTDLVPAFQNLXKDCEAEVRAAASHKVKEFCENLSADCRENVIXSQIL 320
Query: 108 PALDKL 113
P + +L
Sbjct: 321 PCIKEL 326
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,574,465
Number of Sequences: 62578
Number of extensions: 68856
Number of successful extensions: 207
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 164
Number of HSP's gapped (non-prelim): 44
length of query: 115
length of database: 14,973,337
effective HSP length: 78
effective length of query: 37
effective length of database: 10,092,253
effective search space: 373413361
effective search space used: 373413361
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)