Query psy14017
Match_columns 115
No_of_seqs 102 out of 300
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 17:24:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14017.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14017hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0211|consensus 99.4 9.6E-13 2.1E-17 117.7 7.0 75 40-114 570-644 (759)
2 PF02985 HEAT: HEAT repeat; I 98.1 2.5E-06 5.5E-11 47.2 2.4 30 67-96 1-30 (31)
3 PF13513 HEAT_EZ: HEAT-like re 97.7 5.9E-05 1.3E-09 45.7 4.0 53 41-93 1-55 (55)
4 KOG0211|consensus 97.4 6.9E-05 1.5E-09 67.9 1.5 77 38-114 409-488 (759)
5 PF12755 Vac14_Fab1_bd: Vacuol 97.3 0.00078 1.7E-08 46.6 6.2 59 43-101 2-62 (97)
6 PF13646 HEAT_2: HEAT repeats; 97.2 0.00075 1.6E-08 43.2 4.8 49 38-94 11-59 (88)
7 cd00020 ARM Armadillo/beta-cat 96.9 0.0037 8E-08 41.1 5.9 73 41-113 21-99 (120)
8 KOG1243|consensus 96.3 0.01 2.2E-07 53.6 6.5 78 37-114 340-417 (690)
9 PF12717 Cnd1: non-SMC mitotic 96.2 0.019 4.2E-07 42.6 6.2 74 40-114 38-111 (178)
10 KOG2171|consensus 95.9 0.021 4.5E-07 53.8 6.3 72 40-111 361-437 (1075)
11 PF12348 CLASP_N: CLASP N term 95.7 0.027 5.8E-07 42.3 5.3 63 38-100 142-211 (228)
12 PF01602 Adaptin_N: Adaptin N 95.2 0.046 9.9E-07 45.4 5.7 71 38-113 90-160 (526)
13 KOG1240|consensus 95.1 0.037 8.1E-07 53.0 5.1 80 35-114 431-516 (1431)
14 KOG1240|consensus 94.9 0.038 8.2E-07 52.9 4.8 74 39-112 590-663 (1431)
15 PF10363 DUF2435: Protein of u 94.6 0.18 4E-06 34.5 6.3 60 40-99 16-76 (92)
16 PF12717 Cnd1: non-SMC mitotic 94.3 0.15 3.3E-06 37.8 5.9 54 40-95 1-54 (178)
17 PF12755 Vac14_Fab1_bd: Vacuol 94.1 0.13 2.8E-06 35.5 4.8 54 39-93 39-94 (97)
18 PF01602 Adaptin_N: Adaptin N 92.9 0.27 5.8E-06 40.9 5.7 54 39-93 126-179 (526)
19 PRK09687 putative lyase; Provi 92.7 0.22 4.8E-06 39.9 4.8 46 40-93 141-186 (280)
20 KOG2137|consensus 92.2 0.32 7E-06 44.3 5.6 66 49-114 372-437 (700)
21 PTZ00429 beta-adaptin; Provisi 92.0 0.32 6.9E-06 44.4 5.4 58 39-96 152-209 (746)
22 PF00514 Arm: Armadillo/beta-c 91.9 0.34 7.4E-06 27.5 3.7 34 61-94 7-40 (41)
23 cd00020 ARM Armadillo/beta-cat 91.3 0.25 5.5E-06 32.1 3.1 53 61-113 2-57 (120)
24 PRK09687 putative lyase; Provi 91.1 0.58 1.3E-05 37.5 5.6 46 41-94 37-82 (280)
25 PF12348 CLASP_N: CLASP N term 91.1 1.3 2.8E-05 33.2 7.0 58 39-98 106-163 (228)
26 PF12460 MMS19_C: RNAPII trans 91.0 1.1 2.5E-05 37.3 7.3 70 43-113 339-414 (415)
27 PF13646 HEAT_2: HEAT repeats; 90.5 0.55 1.2E-05 29.7 4.0 45 39-91 43-88 (88)
28 PRK13800 putative oxidoreducta 88.4 0.75 1.6E-05 42.3 4.7 46 40-93 820-865 (897)
29 PF02985 HEAT: HEAT repeat; I 87.9 0.63 1.4E-05 25.2 2.5 20 39-58 12-31 (31)
30 KOG2023|consensus 87.8 0.74 1.6E-05 42.4 4.2 58 39-96 186-245 (885)
31 PTZ00429 beta-adaptin; Provisi 87.8 1.3 2.8E-05 40.6 5.8 75 35-113 113-187 (746)
32 KOG2137|consensus 86.8 1.9 4.1E-05 39.4 6.1 70 43-112 405-475 (700)
33 KOG1242|consensus 86.1 1.9 4.1E-05 38.6 5.7 68 44-113 390-461 (569)
34 PRK13800 putative oxidoreducta 84.0 1.8 3.8E-05 39.9 4.7 49 40-96 634-682 (897)
35 PF04826 Arm_2: Armadillo-like 83.7 4.7 0.0001 32.2 6.5 63 38-100 24-88 (254)
36 PF10508 Proteasom_PSMB: Prote 82.5 3.8 8.2E-05 35.3 5.9 75 39-113 89-168 (503)
37 KOG1243|consensus 82.2 1.6 3.4E-05 39.9 3.6 58 55-112 319-376 (690)
38 KOG1820|consensus 82.0 3.5 7.6E-05 38.3 5.8 66 39-104 383-452 (815)
39 KOG2259|consensus 82.0 2.9 6.2E-05 38.6 5.1 73 19-98 370-442 (823)
40 PF13251 DUF4042: Domain of un 81.6 1.5 3.2E-05 33.6 2.8 55 43-97 2-71 (182)
41 PF11698 V-ATPase_H_C: V-ATPas 80.1 5.7 0.00012 28.7 5.3 49 46-94 63-114 (119)
42 KOG2023|consensus 79.2 1.7 3.8E-05 40.1 2.8 72 42-113 408-481 (885)
43 PF05004 IFRD: Interferon-rela 78.6 9.8 0.00021 31.0 6.8 59 39-97 198-259 (309)
44 smart00185 ARM Armadillo/beta- 77.5 4.1 8.9E-05 22.0 3.1 31 64-94 10-40 (41)
45 COG5181 HSH155 U2 snRNP splice 77.4 5.9 0.00013 36.7 5.6 74 31-109 283-359 (975)
46 COG5096 Vesicle coat complex, 76.5 6.1 0.00013 36.6 5.5 55 36-94 101-155 (757)
47 PF14500 MMS19_N: Dos2-interac 75.6 12 0.00026 29.9 6.4 71 37-113 185-255 (262)
48 KOG2025|consensus 74.3 8 0.00017 36.1 5.6 56 40-95 98-155 (892)
49 KOG0168|consensus 74.0 6.2 0.00013 37.4 4.9 75 29-111 174-260 (1051)
50 PF10508 Proteasom_PSMB: Prote 73.2 13 0.00027 32.1 6.4 66 46-111 57-125 (503)
51 PF10521 DUF2454: Protein of u 72.4 6.3 0.00014 31.4 4.1 51 61-111 114-176 (282)
52 KOG1060|consensus 71.7 9.9 0.00021 35.8 5.6 54 39-94 155-208 (968)
53 KOG1242|consensus 71.6 9.5 0.00021 34.3 5.4 73 39-111 187-261 (569)
54 KOG2171|consensus 71.1 16 0.00035 35.1 7.0 73 39-112 92-166 (1075)
55 PF12830 Nipped-B_C: Sister ch 70.5 16 0.00035 27.3 5.8 57 39-98 20-77 (187)
56 KOG0915|consensus 69.8 11 0.00025 37.6 5.8 68 44-111 1253-1322(1702)
57 TIGR02270 conserved hypothetic 69.7 8 0.00017 33.0 4.4 49 39-95 159-207 (410)
58 COG5096 Vesicle coat complex, 69.2 13 0.00029 34.4 5.9 57 39-96 139-196 (757)
59 PF14668 RICTOR_V: Rapamycin-i 67.9 18 0.00039 23.8 4.9 54 45-98 5-61 (73)
60 cd03568 VHS_STAM VHS domain fa 67.4 36 0.00078 24.8 6.9 60 40-99 50-114 (144)
61 PF09450 DUF2019: Domain of un 65.8 1.6 3.4E-05 31.1 -0.5 28 69-96 50-77 (106)
62 PF04826 Arm_2: Armadillo-like 64.8 16 0.00034 29.2 4.9 74 18-96 50-125 (254)
63 PF12765 Cohesin_HEAT: HEAT re 63.8 11 0.00023 22.0 2.9 26 63-88 15-40 (42)
64 PF10274 ParcG: Parkin co-regu 63.7 36 0.00078 26.3 6.6 57 42-98 53-115 (183)
65 KOG0213|consensus 63.1 19 0.00041 34.2 5.6 65 40-109 489-554 (1172)
66 KOG1949|consensus 62.3 13 0.00028 34.9 4.4 72 40-111 233-308 (1005)
67 KOG2956|consensus 60.8 18 0.0004 32.1 5.0 72 34-114 418-492 (516)
68 PF14663 RasGEF_N_2: Rapamycin 57.9 16 0.00035 25.6 3.5 53 62-114 4-56 (115)
69 KOG1248|consensus 57.8 28 0.00061 33.9 6.0 66 39-104 839-907 (1176)
70 KOG1061|consensus 57.4 24 0.00052 32.7 5.3 59 39-97 133-191 (734)
71 KOG2259|consensus 57.4 29 0.00063 32.3 5.7 68 41-112 424-491 (823)
72 KOG1967|consensus 55.5 29 0.00062 33.3 5.5 64 37-100 919-987 (1030)
73 COG5240 SEC21 Vesicle coat com 55.1 21 0.00046 33.0 4.5 79 16-94 467-554 (898)
74 PF03130 HEAT_PBS: PBS lyase H 53.4 7.4 0.00016 20.5 0.9 14 82-95 1-14 (27)
75 PF10274 ParcG: Parkin co-regu 52.7 63 0.0014 24.9 6.2 62 40-101 93-170 (183)
76 KOG1062|consensus 52.6 35 0.00076 32.2 5.6 51 47-98 124-174 (866)
77 KOG0567|consensus 52.2 11 0.00024 31.1 2.2 78 6-95 169-249 (289)
78 PF09324 DUF1981: Domain of un 52.0 67 0.0015 21.2 5.9 53 39-91 30-84 (86)
79 KOG4224|consensus 51.8 8.8 0.00019 33.7 1.6 59 40-98 391-449 (550)
80 KOG1060|consensus 50.6 50 0.0011 31.4 6.2 55 37-95 118-172 (968)
81 COG5181 HSH155 U2 snRNP splice 50.6 24 0.00051 33.0 4.1 63 37-99 327-391 (975)
82 KOG2005|consensus 50.2 34 0.00073 32.0 5.0 53 39-95 652-704 (878)
83 KOG0213|consensus 48.4 54 0.0012 31.4 6.1 75 36-110 521-600 (1172)
84 COG1413 FOG: HEAT repeat [Ener 47.8 34 0.00074 26.9 4.3 47 42-94 195-241 (335)
85 PLN03200 cellulose synthase-in 47.7 35 0.00075 35.2 5.1 72 20-96 187-262 (2102)
86 PF08389 Xpo1: Exportin 1-like 47.1 69 0.0015 21.6 5.3 49 63-111 83-132 (148)
87 cd03572 ENTH_epsin_related ENT 46.8 39 0.00084 24.4 4.1 60 32-98 10-70 (122)
88 KOG2011|consensus 46.0 40 0.00086 32.5 5.0 57 40-96 300-356 (1048)
89 KOG1949|consensus 45.4 19 0.00041 33.9 2.7 56 39-94 275-330 (1005)
90 COG1413 FOG: HEAT repeat [Ener 44.2 47 0.001 26.1 4.6 28 66-93 74-101 (335)
91 KOG4535|consensus 43.7 61 0.0013 29.5 5.5 57 42-98 270-327 (728)
92 PF12397 U3snoRNP10: U3 small 43.4 43 0.00094 22.9 3.8 36 62-97 2-38 (121)
93 PLN03200 cellulose synthase-in 43.3 65 0.0014 33.4 6.2 74 40-113 664-743 (2102)
94 PF12208 DUF3601: Domain of un 42.4 17 0.00036 24.7 1.5 21 9-30 7-27 (78)
95 COG5234 CIN1 Beta-tubulin fold 42.3 55 0.0012 31.0 5.1 68 39-106 208-286 (993)
96 PF05004 IFRD: Interferon-rela 42.0 92 0.002 25.3 6.0 53 44-96 103-161 (309)
97 KOG1241|consensus 41.3 54 0.0012 30.9 4.9 36 63-98 403-438 (859)
98 KOG0212|consensus 40.5 43 0.00093 30.7 4.1 59 42-100 58-118 (675)
99 PF12074 DUF3554: Domain of un 40.0 1.5E+02 0.0033 23.8 7.0 56 39-95 35-90 (339)
100 cd03567 VHS_GGA VHS domain fam 40.0 1.2E+02 0.0027 22.0 5.9 60 40-99 51-120 (139)
101 smart00567 EZ_HEAT E-Z type HE 39.6 50 0.0011 17.1 2.9 29 42-78 2-30 (30)
102 KOG4413|consensus 38.6 76 0.0017 27.7 5.2 65 36-100 49-116 (524)
103 PF11865 DUF3385: Domain of un 38.1 62 0.0013 23.8 4.1 50 46-95 106-157 (160)
104 PF05918 API5: Apoptosis inhib 37.2 88 0.0019 28.1 5.5 55 40-96 35-89 (556)
105 PF12719 Cnd3: Nuclear condens 35.8 99 0.0021 24.5 5.2 60 39-98 76-148 (298)
106 cd08512 PBP2_NikA_DppA_OppA_li 35.2 25 0.00054 29.0 1.7 74 21-94 249-326 (476)
107 cd03561 VHS VHS domain family; 35.2 1.6E+02 0.0034 20.7 6.9 61 39-99 49-116 (133)
108 PF08623 TIP120: TATA-binding 35.0 1E+02 0.0022 23.4 4.9 57 41-98 41-97 (169)
109 PF07571 DUF1546: Protein of u 34.6 1.4E+02 0.0031 19.9 6.0 70 38-111 17-90 (92)
110 KOG2759|consensus 34.6 37 0.00079 29.8 2.7 26 69-94 412-437 (442)
111 PF00790 VHS: VHS domain; Int 34.2 1.3E+02 0.0028 21.3 5.2 62 39-100 54-123 (140)
112 smart00638 LPD_N Lipoprotein N 34.2 1.1E+02 0.0025 26.3 5.7 53 38-93 491-543 (574)
113 TIGR02270 conserved hypothetic 34.0 85 0.0019 26.8 4.8 27 68-94 149-175 (410)
114 KOG4224|consensus 33.4 1.1E+02 0.0023 27.1 5.3 76 38-113 219-300 (550)
115 KOG1517|consensus 32.5 1E+02 0.0022 30.5 5.3 57 40-96 613-672 (1387)
116 KOG2025|consensus 32.3 1.6E+02 0.0034 27.9 6.4 36 60-95 79-114 (892)
117 cd08489 PBP2_NikA The substrat 32.2 40 0.00088 27.9 2.5 35 19-53 235-269 (488)
118 KOG1837|consensus 31.7 88 0.0019 31.6 5.0 51 64-114 1539-1591(1621)
119 PF03932 CutC: CutC family; I 31.5 20 0.00042 27.9 0.5 43 2-45 55-107 (201)
120 cd08513 PBP2_thermophilic_Hb8_ 31.4 37 0.0008 28.0 2.2 72 22-93 240-316 (482)
121 KOG0567|consensus 31.0 99 0.0022 25.7 4.5 48 38-93 231-278 (289)
122 PF12054 DUF3535: Domain of un 30.6 1.9E+02 0.0041 24.9 6.4 62 39-100 99-160 (441)
123 KOG2032|consensus 29.6 2E+02 0.0043 25.9 6.4 89 20-109 252-343 (533)
124 cd08514 PBP2_AppA_like The sub 28.9 64 0.0014 26.6 3.2 39 15-53 236-274 (483)
125 PF05804 KAP: Kinesin-associat 28.4 1.6E+02 0.0035 27.2 5.9 72 41-113 264-339 (708)
126 PF13001 Ecm29: Proteasome sta 28.4 1E+02 0.0022 26.7 4.4 38 62-99 19-56 (501)
127 PRK11572 copper homeostasis pr 28.1 23 0.00049 28.6 0.4 41 3-44 57-107 (248)
128 PF04078 Rcd1: Cell differenti 27.0 91 0.002 25.5 3.7 42 35-76 104-149 (262)
129 cd03569 VHS_Hrs_Vps27p VHS dom 26.9 2.4E+02 0.0053 20.3 6.8 61 40-100 54-119 (142)
130 smart00288 VHS Domain present 26.4 2.4E+02 0.0051 19.9 7.2 61 40-100 50-116 (133)
131 KOG1824|consensus 26.4 1.5E+02 0.0033 29.0 5.4 42 63-104 44-85 (1233)
132 KOG1058|consensus 26.4 45 0.00098 31.6 2.0 58 35-96 107-164 (948)
133 cd00256 VATPase_H VATPase_H, r 26.4 53 0.0011 28.4 2.3 46 49-94 376-424 (429)
134 PF11701 UNC45-central: Myosin 26.4 2.5E+02 0.0055 20.3 6.0 57 40-97 18-74 (157)
135 KOG1078|consensus 26.3 1E+02 0.0023 29.1 4.3 55 38-94 477-531 (865)
136 PF01347 Vitellogenin_N: Lipop 25.2 89 0.0019 27.0 3.5 54 36-92 533-586 (618)
137 COG5110 RPN1 26S proteasome re 24.6 1.3E+02 0.0029 28.0 4.5 54 38-95 652-705 (881)
138 KOG1837|consensus 24.5 1.4E+02 0.0031 30.2 5.0 61 39-99 1553-1615(1621)
139 cd08501 PBP2_Lpqw The substrat 24.1 60 0.0013 26.9 2.2 39 15-53 240-278 (486)
140 cd00896 PI3Kc_III Phosphoinosi 24.1 2.6E+02 0.0056 23.4 5.9 55 39-99 259-313 (350)
141 cd08494 PBP2_NikA_DppA_OppA_li 24.1 52 0.0011 26.7 1.8 31 23-53 233-263 (448)
142 COG0047 PurL Phosphoribosylfor 23.8 28 0.00061 28.0 0.2 9 7-15 54-62 (231)
143 KOG0212|consensus 23.6 1.6E+02 0.0035 27.1 4.9 63 37-99 177-241 (675)
144 KOG0166|consensus 23.5 1.5E+02 0.0033 26.4 4.6 70 44-113 212-287 (514)
145 KOG1517|consensus 23.4 1.9E+02 0.0041 28.7 5.4 57 39-95 654-732 (1387)
146 COG5218 YCG1 Chromosome conden 23.2 2.2E+02 0.0047 26.7 5.6 59 41-99 105-165 (885)
147 PF04118 Dopey_N: Dopey, N-ter 23.1 3E+02 0.0065 22.7 6.1 54 39-98 151-204 (307)
148 PF13368 Toprim_C_rpt: Topoiso 22.9 45 0.00098 20.8 1.0 10 6-15 12-21 (61)
149 cd08518 PBP2_NikA_DppA_OppA_li 22.1 64 0.0014 26.6 2.0 78 16-94 218-307 (464)
150 KOG1991|consensus 22.0 3.8E+02 0.0083 26.1 7.1 75 39-113 474-552 (1010)
151 KOG1820|consensus 21.9 2.6E+02 0.0056 26.4 6.0 65 35-99 303-369 (815)
152 KOG0417|consensus 21.6 99 0.0022 23.3 2.7 38 49-86 84-121 (148)
153 KOG0915|consensus 21.3 3.3E+02 0.0071 28.0 6.7 71 39-110 1289-1361(1702)
154 cd00995 PBP2_NikA_DppA_OppA_li 21.2 80 0.0017 25.5 2.3 77 17-93 231-312 (466)
155 PF12830 Nipped-B_C: Sister ch 21.0 1.2E+02 0.0025 22.7 3.0 34 62-95 4-37 (187)
156 PF13001 Ecm29: Proteasome sta 21.0 2.3E+02 0.0049 24.6 5.2 65 35-99 382-447 (501)
157 TIGR00051 acyl-CoA thioester h 20.8 92 0.002 20.1 2.2 20 5-24 61-80 (117)
158 KOG1943|consensus 20.8 1.9E+02 0.0041 28.4 4.9 43 62-104 337-379 (1133)
159 COG5201 SKP1 SCF ubiquitin lig 20.2 67 0.0015 24.2 1.5 22 78-99 42-63 (158)
160 PF14888 PBP-Tp47_c: Penicilli 20.1 11 0.00023 28.7 -2.7 18 7-25 51-68 (161)
No 1
>KOG0211|consensus
Probab=99.37 E-value=9.6e-13 Score=117.75 Aligned_cols=75 Identities=37% Similarity=0.484 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHhhh
Q psy14017 40 SAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLN 114 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~kL~ 114 (115)
+-.+|+|++++|..+++++|++++.++++|++..+.+|++||||||+||.|..+.+.+.....++.|+|+++.|.
T Consensus 570 ~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~ 644 (759)
T KOG0211|consen 570 NYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLS 644 (759)
T ss_pred ccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhc
Confidence 568999999999999999999999999999999999999999999999999999999999999999999999875
No 2
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=98.09 E-value=2.5e-06 Score=47.25 Aligned_cols=30 Identities=33% Similarity=0.449 Sum_probs=27.3
Q ss_pred HHHHHhhhcCCCCcchhHHHHHHHHHhccc
Q psy14017 67 LLPTVLNMAGDNVANVRFNVAKTLQKIGPI 96 (115)
Q Consensus 67 ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~ 96 (115)
|+|.++++++|+.|+||.+++++|..+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999999999864
No 3
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.71 E-value=5.9e-05 Score=45.68 Aligned_cols=53 Identities=25% Similarity=0.323 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHhhhChh--HHhHhHHHHHhhhcCCCCcchhHHHHHHHHHh
Q psy14017 41 AEIRRIPQKYSSQIAEACGPT--VTANFLLPTVLNMAGDNVANVRFNVAKTLQKI 93 (115)
Q Consensus 41 ~~VR~t~l~aI~~La~~l~~e--ii~~~ILPivl~L~kD~VPNVRfNVAK~L~~I 93 (115)
+.||.+.+.++..++...+.. .....++|.+..+++|+-+.||-+++.+|..|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 579999999998877555432 36789999999999999999999999999864
No 4
>KOG0211|consensus
Probab=97.37 E-value=6.9e-05 Score=67.91 Aligned_cols=77 Identities=17% Similarity=0.251 Sum_probs=70.0
Q ss_pred chhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHH---HHHHHhcccccchhhhhcHHHHHHhhh
Q psy14017 38 IESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVA---KTLQKIGPILETNVIQSQVKPALDKLN 114 (115)
Q Consensus 38 ~~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVA---K~L~~Ia~~l~~~~v~s~IkP~L~kL~ 114 (115)
-+++|||.+.++.++.+++.++++.+.+.++|.++.+++|..|.||.|.. ..++..-...+...+++..+|++.+|+
T Consensus 409 d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~ 488 (759)
T KOG0211|consen 409 DNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELA 488 (759)
T ss_pred cccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhc
Confidence 36789999999999999999999999999999999999999999999999 556666777777899999999998875
No 5
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.35 E-value=0.00078 Score=46.59 Aligned_cols=59 Identities=22% Similarity=0.281 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhhhChhH--HhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchh
Q psy14017 43 IRRIPQKYSSQIAEACGPTV--TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNV 101 (115)
Q Consensus 43 VR~t~l~aI~~La~~l~~ei--i~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~ 101 (115)
+|.+-+.++...+-.++++. -.++|+|.|++.+.|+.+.||+.++.+|-.+++......
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~ 62 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEI 62 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888764 458999999999999999999999999999998776543
No 6
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.23 E-value=0.00075 Score=43.24 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=40.9
Q ss_pred chhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhc
Q psy14017 38 IESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIG 94 (115)
Q Consensus 38 ~~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia 94 (115)
-.++.+|..++.++..+. ....+|.+..+++|+.|+||..++.+|..++
T Consensus 11 ~~~~~vr~~a~~~L~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~ 59 (88)
T PF13646_consen 11 DPDPQVRAEAARALGELG--------DPEAIPALIELLKDEDPMVRRAAARALGRIG 59 (88)
T ss_dssp SSSHHHHHHHHHHHHCCT--------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH
T ss_pred CCCHHHHHHHHHHHHHcC--------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 356889998888877433 2377999999999999999999999999885
No 7
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.91 E-value=0.0037 Score=41.07 Aligned_cols=73 Identities=18% Similarity=0.146 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHhh---hChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch---hhhhcHHHHHHhh
Q psy14017 41 AEIRRIPQKYSSQIAEA---CGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN---VIQSQVKPALDKL 113 (115)
Q Consensus 41 ~~VR~t~l~aI~~La~~---l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~---~v~s~IkP~L~kL 113 (115)
..+|...+.++..++.. .....+...++|.++++++|+.++||.+++.+|..++...... ..+..+.|.|.++
T Consensus 21 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~ 99 (120)
T cd00020 21 ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNL 99 (120)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHH
Confidence 78999999999999853 4455566699999999999999999999999999998765321 2334466666554
No 8
>KOG1243|consensus
Probab=96.34 E-value=0.01 Score=53.56 Aligned_cols=78 Identities=17% Similarity=0.222 Sum_probs=72.2
Q ss_pred cchhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHhhh
Q psy14017 37 SIESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLN 114 (115)
Q Consensus 37 ~~~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~kL~ 114 (115)
+....++|+-++.-+.+..+.+.++++.++|+|.+...+.|..|-+|-...|++..+++.+...+++.++.-++.+++
T Consensus 340 ~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q 417 (690)
T KOG1243|consen 340 KSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQ 417 (690)
T ss_pred cCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhC
Confidence 345669999999999999999999999999999999999999999999999999999999999888888888887764
No 9
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.16 E-value=0.019 Score=42.60 Aligned_cols=74 Identities=14% Similarity=0.141 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHhhh
Q psy14017 40 SAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLN 114 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~kL~ 114 (115)
++.||.+++.+++.|... +.--+..+++.-++.++.|+.|+||-.+...+.++....+++.+.+.+..++..|.
T Consensus 38 ~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~ 111 (178)
T PF12717_consen 38 DPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLN 111 (178)
T ss_pred CHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 588999999999888754 33445577778888899999999999999999999888767767666666665553
No 10
>KOG2171|consensus
Probab=95.85 E-value=0.021 Score=53.79 Aligned_cols=72 Identities=25% Similarity=0.311 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHHHHhhhChhH--HhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch---hhhhcHHHHHH
Q psy14017 40 SAEIRRIPQKYSSQIAEACGPTV--TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN---VIQSQVKPALD 111 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~~ei--i~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~---~v~s~IkP~L~ 111 (115)
+...|-+.+.||..+++-+++-. ...+|+|+|++.++||.|.||..+..++.+++..+.+. .-.+.+.|.|.
T Consensus 361 ~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~ 437 (1075)
T KOG2171|consen 361 EWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALI 437 (1075)
T ss_pred CHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHH
Confidence 45789999999999999887544 44889999999999999999999999999998887654 33355555554
No 11
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.67 E-value=0.027 Score=42.27 Aligned_cols=63 Identities=14% Similarity=0.181 Sum_probs=48.3
Q ss_pred chhHHHHHHHHHHHHHHHhhhC--h-----hHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch
Q psy14017 38 IESAEIRRIPQKYSSQIAEACG--P-----TVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN 100 (115)
Q Consensus 38 ~~s~~VR~t~l~aI~~La~~l~--~-----eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~ 100 (115)
--|+.+|..++.++..+....+ . ....+.+.|.+.+++.|+-|+||-..-+++..+.+..+..
T Consensus 142 ~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 142 SKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp -S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred CCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 3578999999999999888777 2 2234679999999999999999999999999998777653
No 12
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=95.23 E-value=0.046 Score=45.39 Aligned_cols=71 Identities=27% Similarity=0.340 Sum_probs=49.3
Q ss_pred chhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHhh
Q psy14017 38 IESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113 (115)
Q Consensus 38 ~~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~kL 113 (115)
-+++.+|...+.++..++ .+ .+.+.++|.|.+++.|+.|.||-+++-++.++.+.- ++.+...+.|.+.+|
T Consensus 90 ~~n~~~~~lAL~~l~~i~---~~-~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~-p~~~~~~~~~~l~~l 160 (526)
T PF01602_consen 90 SPNPYIRGLALRTLSNIR---TP-EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKD-PDLVEDELIPKLKQL 160 (526)
T ss_dssp SSSHHHHHHHHHHHHHH----SH-HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-HCCHHGGHHHHHHHH
T ss_pred CCCHHHHHHHHhhhhhhc---cc-chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC-HHHHHHHHHHHHhhh
Confidence 356778876666666555 33 466788999999999999999999999988887663 344333255655554
No 13
>KOG1240|consensus
Probab=95.07 E-value=0.037 Score=52.97 Aligned_cols=80 Identities=16% Similarity=0.272 Sum_probs=66.6
Q ss_pred cccchhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccc------cchhhhhcHHH
Q psy14017 35 DESIESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPIL------ETNVIQSQVKP 108 (115)
Q Consensus 35 ~~~~~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l------~~~~v~s~IkP 108 (115)
-..+...+-|...+.-+..+|..++.|...+.+||.+..++.|+.+.||-.+..+|.++-..+ +...+.+-+.|
T Consensus 431 IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP 510 (1431)
T KOG1240|consen 431 IRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFP 510 (1431)
T ss_pred HHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhh
Confidence 334555677778888889999999999999999999999999999999999999888774433 44577888999
Q ss_pred HHHhhh
Q psy14017 109 ALDKLN 114 (115)
Q Consensus 109 ~L~kL~ 114 (115)
.|+.|.
T Consensus 511 ~L~~l~ 516 (1431)
T KOG1240|consen 511 HLNHLL 516 (1431)
T ss_pred hhHhhh
Confidence 988764
No 14
>KOG1240|consensus
Probab=94.95 E-value=0.038 Score=52.94 Aligned_cols=74 Identities=9% Similarity=0.144 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHh
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDK 112 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~k 112 (115)
+.+.||++++++|..|+...|++.....||+.++..++|..++-|-....++--++-.++...+++-++|.|++
T Consensus 590 ~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q 663 (1431)
T KOG1240|consen 590 SPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQ 663 (1431)
T ss_pred CchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHH
Confidence 34799999999999999999999999999999999999999999988888887777888888889999999875
No 15
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.55 E-value=0.18 Score=34.46 Aligned_cols=60 Identities=17% Similarity=0.146 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHHHHhhhC-hhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc
Q psy14017 40 SAEIRRIPQKYSSQIAEACG-PTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET 99 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~-~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~ 99 (115)
-+.+|.--+.-+..|...-+ .......++.+++.+++|+-|=|=+|+.|+|..++.....
T Consensus 16 ~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 16 LPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred CcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 36799888888888887777 6667789999999999999999999999999999977653
No 16
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.29 E-value=0.15 Score=37.78 Aligned_cols=54 Identities=13% Similarity=0.038 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcc
Q psy14017 40 SAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGP 95 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~ 95 (115)
.|.+|..+.-++..|+-..+ .+.+..+|.+.++++|+.|.||-++..+|..+..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~--~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~ 54 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP--NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLIL 54 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc--HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 36799999999999998776 6778999999999999999999999999998854
No 17
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.07 E-value=0.13 Score=35.46 Aligned_cols=54 Identities=15% Similarity=0.227 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHH--hHhHHHHHhhhcCCCCcchhHHHHHHHHHh
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVT--ANFLLPTVLNMAGDNVANVRFNVAKTLQKI 93 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii--~~~ILPivl~L~kD~VPNVRfNVAK~L~~I 93 (115)
+..-||-..+.|+-.++.+...+.+ -.+|.+.+.+++.|+.||||-.+ ..|..+
T Consensus 39 ~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 39 QDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence 3467999999999999999887775 47899999999999999999654 555443
No 18
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=92.95 E-value=0.27 Score=40.85 Aligned_cols=54 Identities=19% Similarity=0.227 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHh
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKI 93 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~I 93 (115)
+++.||.+++.|+..+... .++.+...++|.+.++++|+.|.|+.++...+..+
T Consensus 126 ~~~~VRk~A~~~l~~i~~~-~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 126 PSPYVRKKAALALLKIYRK-DPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp SSHHHHHHHHHHHHHHHHH-CHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 4679999999999999977 44544433899999999999999999999999999
No 19
>PRK09687 putative lyase; Provisional
Probab=92.68 E-value=0.22 Score=39.89 Aligned_cols=46 Identities=24% Similarity=0.182 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHh
Q psy14017 40 SAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKI 93 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~I 93 (115)
++.||..++.++..+. .+..+|.++.+++|+.++||-.++.+|..+
T Consensus 141 ~~~VR~~a~~aLg~~~--------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 141 STNVRFAVAFALSVIN--------DEAAIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred CHHHHHHHHHHHhccC--------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 5679988888885443 134567777777777777777777777766
No 20
>KOG2137|consensus
Probab=92.23 E-value=0.32 Score=44.26 Aligned_cols=66 Identities=14% Similarity=0.244 Sum_probs=56.6
Q ss_pred HHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHhhh
Q psy14017 49 KYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLN 114 (115)
Q Consensus 49 ~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~kL~ 114 (115)
.-...|.+.+.+|.+.++|||++....+|...+|-=.+.+.+-.+++.+|-..+.+.|.|.|..|+
T Consensus 372 e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~ 437 (700)
T KOG2137|consen 372 ENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLA 437 (700)
T ss_pred hhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcch
Confidence 334457888899999999999999999999999999999999999999998888899999887763
No 21
>PTZ00429 beta-adaptin; Provisional
Probab=91.99 E-value=0.32 Score=44.41 Aligned_cols=58 Identities=10% Similarity=0.041 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI 96 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~ 96 (115)
.+++||.+.+.|+-++-..-+.-.....+++.+.+|+.|+.|.|..|+..+|..+.+.
T Consensus 152 ~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 152 PDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred CCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence 5699999999999999765443323467889999999999999999999999999654
No 22
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=91.86 E-value=0.34 Score=27.50 Aligned_cols=34 Identities=12% Similarity=0.155 Sum_probs=30.2
Q ss_pred hHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhc
Q psy14017 61 TVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIG 94 (115)
Q Consensus 61 eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia 94 (115)
.++....+|.+++|++++.+.|+.+++-+|..|+
T Consensus 7 ~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 7 AIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4566779999999999999999999999998775
No 23
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=91.33 E-value=0.25 Score=32.14 Aligned_cols=53 Identities=23% Similarity=0.216 Sum_probs=39.4
Q ss_pred hHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccc---cchhhhhcHHHHHHhh
Q psy14017 61 TVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPIL---ETNVIQSQVKPALDKL 113 (115)
Q Consensus 61 eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l---~~~~v~s~IkP~L~kL 113 (115)
+.+...++|.++++++|+.+++|.+++.++..++... ....++..+.|.|.++
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~ 57 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQL 57 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHH
Confidence 3456679999999999999999999999999998652 2224444566665543
No 24
>PRK09687 putative lyase; Provisional
Probab=91.15 E-value=0.58 Score=37.50 Aligned_cols=46 Identities=11% Similarity=0.018 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhc
Q psy14017 41 AEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIG 94 (115)
Q Consensus 41 ~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia 94 (115)
..||.+.++++..+.. +.+++.+.++++|+.|.||...+.+|.+++
T Consensus 37 ~~vR~~A~~aL~~~~~--------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg 82 (280)
T PRK09687 37 SLKRISSIRVLQLRGG--------QDVFRLAIELCSSKNPIERDIGADILSQLG 82 (280)
T ss_pred HHHHHHHHHHHHhcCc--------chHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 3455555555544432 244444455555555555555555555554
No 25
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=91.05 E-value=1.3 Score=33.16 Aligned_cols=58 Identities=21% Similarity=0.165 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccccc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE 98 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~ 98 (115)
++..+|.++..|+..+...++ ...+-+.+.+....++..|.||..+++.+..+....+
T Consensus 106 ~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 106 SKKFIREAANNALDAIIESCS--YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp --HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred ccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 456899999999999999877 1222348888899999999999999999999987776
No 26
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=90.99 E-value=1.1 Score=37.32 Aligned_cols=70 Identities=24% Similarity=0.189 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHhhhChhHHh---HhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhh---cHHHHHHhh
Q psy14017 43 IRRIPQKYSSQIAEACGPTVTA---NFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQS---QVKPALDKL 113 (115)
Q Consensus 43 VR~t~l~aI~~La~~l~~eii~---~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s---~IkP~L~kL 113 (115)
.|...+.|+..+-..++++++. .+++|++++.++=+.++|+..+..+|..+...- ++.+++ .+.|.|.+|
T Consensus 339 ~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 339 IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-PELISEHLSSLIPRLLKL 414 (415)
T ss_pred hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHhc
Confidence 7788889999999999999877 679999999998888899999999999887654 344444 456666554
No 27
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=90.51 E-value=0.55 Score=29.67 Aligned_cols=45 Identities=22% Similarity=0.318 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCC-CcchhHHHHHHHH
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDN-VANVRFNVAKTLQ 91 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~-VPNVRfNVAK~L~ 91 (115)
+++.||.+++.++..+. .+..+|.+.++++|+ ...||..++++|.
T Consensus 43 ~~~~vr~~a~~aL~~i~--------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 43 EDPMVRRAAARALGRIG--------DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp SSHHHHHHHHHHHHCCH--------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 56789999999999885 356888888877664 5557999988874
No 28
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=88.40 E-value=0.75 Score=42.26 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHh
Q psy14017 40 SAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKI 93 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~I 93 (115)
++.||.+.+.++..+.. +.-+|.+..+++|+.++||..++.+|..+
T Consensus 820 d~~VR~~Aa~aL~~l~~--------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 820 AWQVRQGAARALAGAAA--------DVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred ChHHHHHHHHHHHhccc--------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 46777777777765432 24458888888899999999998888876
No 29
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=87.88 E-value=0.63 Score=25.17 Aligned_cols=20 Identities=35% Similarity=0.562 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHhhh
Q psy14017 39 ESAEIRRIPQKYSSQIAEAC 58 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l 58 (115)
+++.||.+.++|+..+++.+
T Consensus 12 ~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 12 PSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp SSHHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHHHhhC
Confidence 47899999999999998764
No 30
>KOG2023|consensus
Probab=87.81 E-value=0.74 Score=42.41 Aligned_cols=58 Identities=21% Similarity=0.211 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhH--HhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTV--TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI 96 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~ei--i~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~ 96 (115)
.||-.|.-...|+++....-.+.. -..+++-.+-.+++|+.|+||-||+.+|--+-+.
T Consensus 186 ~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev 245 (885)
T KOG2023|consen 186 PSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV 245 (885)
T ss_pred CChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh
Confidence 488899999999999887666544 3478899999999999999999999999766543
No 31
>PTZ00429 beta-adaptin; Provisional
Probab=87.79 E-value=1.3 Score=40.56 Aligned_cols=75 Identities=19% Similarity=0.076 Sum_probs=51.3
Q ss_pred cccchhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHhh
Q psy14017 35 DESIESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113 (115)
Q Consensus 35 ~~~~~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~kL 113 (115)
|-.-.+|.+|...+.++.. ... ..+.+.+++.+.+.++|+.|-||-++|-++.++-..-..-..+..+.+.|.+|
T Consensus 113 Dl~d~Np~IRaLALRtLs~---Ir~-~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~L 187 (746)
T PTZ00429 113 DTTNSSPVVRALAVRTMMC---IRV-SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVEL 187 (746)
T ss_pred HcCCCCHHHHHHHHHHHHc---CCc-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHH
Confidence 3344678999766655444 333 35788899999999999999999999999999865432211233445555544
No 32
>KOG2137|consensus
Probab=86.77 E-value=1.9 Score=39.45 Aligned_cols=70 Identities=19% Similarity=0.254 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHhhhChhHHhHhHHHHHhhh-cCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHh
Q psy14017 43 IRRIPQKYSSQIAEACGPTVTANFLLPTVLNM-AGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDK 112 (115)
Q Consensus 43 VR~t~l~aI~~La~~l~~eii~~~ILPivl~L-~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~k 112 (115)
+-..++..+...++.++-..+.+.|+|-+-.+ .+-...-|+.||+-|++.+++.+|.-.+-+++.|.+++
T Consensus 405 iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~ 475 (700)
T KOG2137|consen 405 IQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKC 475 (700)
T ss_pred hHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33456677777788888777888888888775 56667778888888888888888777777777777664
No 33
>KOG1242|consensus
Probab=86.06 E-value=1.9 Score=38.60 Aligned_cols=68 Identities=21% Similarity=0.238 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhhh-Chh---HHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHhh
Q psy14017 44 RRIPQKYSSQIAEAC-GPT---VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113 (115)
Q Consensus 44 R~t~l~aI~~La~~l-~~e---ii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~kL 113 (115)
|+++. .+--++.-+ ++. .....++|-+-..+.|++|+||=..+|+|..+.+.++.+.. ....|.|.+.
T Consensus 390 r~t~~-IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e~ 461 (569)
T KOG1242|consen 390 RKTAI-IIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF-DDLIPELSET 461 (569)
T ss_pred hhHHH-HHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHHh
Confidence 55544 344444433 332 34578889999999999999999999999999998887766 6677777653
No 34
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=83.95 E-value=1.8 Score=39.87 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccc
Q psy14017 40 SAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI 96 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~ 96 (115)
.+.||...+.++..+. ....+|.+.++++|+.++||..++++|..+.+.
T Consensus 634 d~~VR~~Av~~L~~~~--------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~ 682 (897)
T PRK13800 634 DPGVRRTAVAVLTETT--------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEV 682 (897)
T ss_pred CHHHHHHHHHHHhhhc--------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 3456655555554443 245678888888999999999999999888543
No 35
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=83.65 E-value=4.7 Score=32.16 Aligned_cols=63 Identities=13% Similarity=0.033 Sum_probs=49.1
Q ss_pred chhHHHHHHHHHHHHHHHhh-hChhHHhH-hHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch
Q psy14017 38 IESAEIRRIPQKYSSQIAEA-CGPTVTAN-FLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN 100 (115)
Q Consensus 38 ~~s~~VR~t~l~aI~~La~~-l~~eii~~-~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~ 100 (115)
..-|..+..+++++...+.. ..++.+.+ -.+|++.++++||.|.||-.+..++.-++...+++
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 34466777777888777663 44565554 78999999999999999999999999888766554
No 36
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=82.47 E-value=3.8 Score=35.33 Aligned_cols=75 Identities=25% Similarity=0.298 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhC---hhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch--hhhhcHHHHHHhh
Q psy14017 39 ESAEIRRIPQKYSSQIAEACG---PTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN--VIQSQVKPALDKL 113 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~---~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~--~v~s~IkP~L~kL 113 (115)
+++.||.-++.++..++..-+ .-.....++|.++.++.|+..+|.-.+++.|..+++.-..- .+.+...+.|.++
T Consensus 89 ~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l 168 (503)
T PF10508_consen 89 PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSL 168 (503)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHH
Confidence 467999999999888764321 22345889999999999999999999999999998754321 2233335555554
No 37
>KOG1243|consensus
Probab=82.24 E-value=1.6 Score=39.92 Aligned_cols=58 Identities=12% Similarity=0.192 Sum_probs=50.6
Q ss_pred HhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHh
Q psy14017 55 AEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDK 112 (115)
Q Consensus 55 a~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~k 112 (115)
+..++.+...+.++|.+++|.+-+.--||+-....+.+.++.+..+.++++|.|.+..
T Consensus 319 ~k~ld~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~ 376 (690)
T KOG1243|consen 319 GKDLDEEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVAL 376 (690)
T ss_pred hhhccccccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHh
Confidence 3345556677889999999999999999999999999999999999999999998754
No 38
>KOG1820|consensus
Probab=81.99 E-value=3.5 Score=38.34 Aligned_cols=66 Identities=14% Similarity=0.176 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhC----hhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhh
Q psy14017 39 ESAEIRRIPQKYSSQIAEACG----PTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQS 104 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~----~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s 104 (115)
-+|..|+-|.......-..++ ...+.+.+.|.+++..+|..++||-+...++..+...++...++.
T Consensus 383 knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k 452 (815)
T KOG1820|consen 383 KNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKK 452 (815)
T ss_pred CChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 578899988766665555444 666889999999999999999999999999999999988765543
No 39
>KOG2259|consensus
Probab=81.97 E-value=2.9 Score=38.59 Aligned_cols=73 Identities=27% Similarity=0.265 Sum_probs=58.4
Q ss_pred eecCCcccccccCCCccccchhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccccc
Q psy14017 19 RDLGGLGRFGLGLTSEDESIESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE 98 (115)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~ 98 (115)
---|.-|-|=-|| ||| .-.||.+.-.++..||..- -.+...-+.++.+|.+|++..||+.+.++|..|+..+.
T Consensus 370 I~sGACGA~VhGl--EDE---f~EVR~AAV~Sl~~La~ss--P~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~ 442 (823)
T KOG2259|consen 370 IPSGACGALVHGL--EDE---FYEVRRAAVASLCSLATSS--PGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA 442 (823)
T ss_pred ccccccceeeeec--hHH---HHHHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe
Confidence 3345566666666 443 5789999999999998542 24677889999999999999999999999999998764
No 40
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=81.59 E-value=1.5 Score=33.58 Aligned_cols=55 Identities=18% Similarity=0.145 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHhhhChhHHh---HhHHHHH------------hhhcCCCCcchhHHHHHHHHHhcccc
Q psy14017 43 IRRIPQKYSSQIAEACGPTVTA---NFLLPTV------------LNMAGDNVANVRFNVAKTLQKIGPIL 97 (115)
Q Consensus 43 VR~t~l~aI~~La~~l~~eii~---~~ILPiv------------l~L~kD~VPNVRfNVAK~L~~Ia~~l 97 (115)
+|++.+.|+..++..+++..+. ..++|.. .-+.+||.|.||..++..+..+-+..
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gs 71 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGS 71 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHcc
Confidence 7999999999999997766542 4444443 33679999999999999999886544
No 41
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=80.05 E-value=5.7 Score=28.68 Aligned_cols=49 Identities=10% Similarity=0.106 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhhC--hhHHh-HhHHHHHhhhcCCCCcchhHHHHHHHHHhc
Q psy14017 46 IPQKYSSQIAEACG--PTVTA-NFLLPTVLNMAGDNVANVRFNVAKTLQKIG 94 (115)
Q Consensus 46 t~l~aI~~La~~l~--~eii~-~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia 94 (115)
.+++=|..++...+ ..++. -..-..|..|+.++.|+||+++.++++++.
T Consensus 63 Vac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 63 VACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred hhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 33444444444332 33332 345678899999999999999999999874
No 42
>KOG2023|consensus
Probab=79.21 E-value=1.7 Score=40.11 Aligned_cols=72 Identities=24% Similarity=0.273 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHhhhChhHHh--HhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHhh
Q psy14017 42 EIRRIPQKYSSQIAEACGPTVTA--NFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113 (115)
Q Consensus 42 ~VR~t~l~aI~~La~~l~~eii~--~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~kL 113 (115)
.+|.+--.|+..+|+-|-+-.+- ..++|+++.++.|.-|=||--.+=+|...++++-.+.-++..+|.|..|
T Consensus 408 ~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~l 481 (885)
T KOG2023|consen 408 KVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGL 481 (885)
T ss_pred hhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHH
Confidence 34555556666666655433322 3489999999999999999999999999999998877778889988875
No 43
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=78.58 E-value=9.8 Score=30.97 Aligned_cols=59 Identities=8% Similarity=0.085 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHHHHHHhhhCh---hHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGP---TVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPIL 97 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~---eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l 97 (115)
.++.+-.+.+.+...|...++. ....+..+|.+..++.-+..|||+.+..++..+-+..
T Consensus 198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 3567999999999999999887 3345668999999999999999999999999885544
No 44
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=77.49 E-value=4.1 Score=21.97 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=26.5
Q ss_pred hHhHHHHHhhhcCCCCcchhHHHHHHHHHhc
Q psy14017 64 ANFLLPTVLNMAGDNVANVRFNVAKTLQKIG 94 (115)
Q Consensus 64 ~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia 94 (115)
....+|.+.++++.+.++++.+++.+|..++
T Consensus 10 ~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 10 DAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 3458899999999989999999999988775
No 45
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=77.40 E-value=5.9 Score=36.74 Aligned_cols=74 Identities=23% Similarity=0.317 Sum_probs=58.4
Q ss_pred CCCccccchh--HHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCC-CcchhHHHHHHHHHhcccccchhhhhcHH
Q psy14017 31 LTSEDESIES--AEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDN-VANVRFNVAKTLQKIGPILETNVIQSQVK 107 (115)
Q Consensus 31 ~~~~~~~~~s--~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~-VPNVRfNVAK~L~~Ia~~l~~~~v~s~Ik 107 (115)
+++-...|++ ++||..++.|....+.++|.+ .++|++-.++..+ .-.-|-...++.++|+..++.+.+ +.+.
T Consensus 283 vs~mrpDi~~~deYVRnvt~ra~~vva~algv~----~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l-~hl~ 357 (975)
T COG5181 283 VSSMRPDITSKDEYVRNVTGRAVGVVADALGVE----ELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRL-SHLG 357 (975)
T ss_pred eeeccCCcccccHHHHHHHHHHHHHHHHhhCcH----HHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHH-hhhh
Confidence 4444444443 599999999999999999976 7899999998887 788899999999999998887654 3444
Q ss_pred HH
Q psy14017 108 PA 109 (115)
Q Consensus 108 P~ 109 (115)
|.
T Consensus 358 ~l 359 (975)
T COG5181 358 PL 359 (975)
T ss_pred hH
Confidence 43
No 46
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=76.53 E-value=6.1 Score=36.56 Aligned_cols=55 Identities=18% Similarity=0.109 Sum_probs=39.8
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhc
Q psy14017 36 ESIESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIG 94 (115)
Q Consensus 36 ~~~~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia 94 (115)
-.-.|+..|..++..++.+- ...+...++|.+.++++|+.|-||-++|-++.++-
T Consensus 101 l~d~N~~iR~~AlR~ls~l~----~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly 155 (757)
T COG5096 101 LQDPNEEIRGFALRTLSLLR----VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLY 155 (757)
T ss_pred ccCCCHHHHHHHHHHHHhcC----hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH
Confidence 34457778876665555443 34678888888888888888888888888877764
No 47
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=75.63 E-value=12 Score=29.91 Aligned_cols=71 Identities=15% Similarity=0.249 Sum_probs=58.0
Q ss_pred cchhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHhh
Q psy14017 37 SIESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113 (115)
Q Consensus 37 ~~~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~kL 113 (115)
.|+...-+.++..|+.. .....+..+|.++.=+....++++..+.++|....+.-+.+.+.+.+.+....|
T Consensus 185 ~IT~edLk~~L~~cl~s------~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 185 GITREDLKRALRNCLSS------TPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNAL 255 (262)
T ss_pred CCCHHHHHHHHHHHhcC------cHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 57777788888877752 235778999999999999999999999999999999998887777777665544
No 48
>KOG2025|consensus
Probab=74.33 E-value=8 Score=36.10 Aligned_cols=56 Identities=16% Similarity=0.088 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHHHHhh--hChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcc
Q psy14017 40 SAEIRRIPQKYSSQIAEA--CGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGP 95 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~--l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~ 95 (115)
+..||--+++-+..+... -=.|.+.+.+.--++.-+.|+.||||+.+.++|..+..
T Consensus 98 dk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~ 155 (892)
T KOG2025|consen 98 DKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQG 155 (892)
T ss_pred chhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc
Confidence 457899999988888873 33577888888888999999999999999999999973
No 49
>KOG0168|consensus
Probab=74.02 E-value=6.2 Score=37.40 Aligned_cols=75 Identities=20% Similarity=0.339 Sum_probs=54.2
Q ss_pred ccCCCc-cccchhHHHHHHHHHHHHHHHhh--hChhH-----HhHhHHHHHhhhcCCCC-cchhHHHHHHHHHhcccccc
Q psy14017 29 LGLTSE-DESIESAEIRRIPQKYSSQIAEA--CGPTV-----TANFLLPTVLNMAGDNV-ANVRFNVAKTLQKIGPILET 99 (115)
Q Consensus 29 ~~~~~~-~~~~~s~~VR~t~l~aI~~La~~--l~~ei-----i~~~ILPivl~L~kD~V-PNVRfNVAK~L~~Ia~~l~~ 99 (115)
.||+.| ||+++ +.++.+|++. ++.|. -.+.++|.+..+++++. ++|-.+++++|--+.+.+..
T Consensus 174 ~gL~~~~Des~Q--------leal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 174 QGLQAESDESQQ--------LEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred HhccccCChHHH--------HHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence 466666 77653 4566677765 33333 34889999999988874 88999999999999888876
Q ss_pred h---hhhhcHHHHHH
Q psy14017 100 N---VIQSQVKPALD 111 (115)
Q Consensus 100 ~---~v~s~IkP~L~ 111 (115)
+ ++.....|+|.
T Consensus 246 S~a~vV~~~aIPvl~ 260 (1051)
T KOG0168|consen 246 SSAIVVDEHAIPVLL 260 (1051)
T ss_pred hhheeecccchHHHH
Confidence 5 55556677765
No 50
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=73.22 E-value=13 Score=32.14 Aligned_cols=66 Identities=15% Similarity=0.121 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch---hhhhcHHHHHH
Q psy14017 46 IPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN---VIQSQVKPALD 111 (115)
Q Consensus 46 t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~---~v~s~IkP~L~ 111 (115)
.++.++..+-.....+.+...+.|.+...++-+.|+||..+++.+..++..-+.. ..+..+.|.+.
T Consensus 57 ~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~ 125 (503)
T PF10508_consen 57 LICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLII 125 (503)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHH
Confidence 3446677777777888889999999999999999999999999998886544321 23344555543
No 51
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=72.39 E-value=6.3 Score=31.38 Aligned_cols=51 Identities=16% Similarity=0.321 Sum_probs=40.2
Q ss_pred hHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch------------hhhhcHHHHHH
Q psy14017 61 TVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN------------VIQSQVKPALD 111 (115)
Q Consensus 61 eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~------------~v~s~IkP~L~ 111 (115)
+.-...++|.++.+++|..|.+|..-.++|..+...+... ++++.+.|+|.
T Consensus 114 ~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~ 176 (282)
T PF10521_consen 114 SQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLY 176 (282)
T ss_pred HHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhh
Confidence 3445788999999999999999999999999998766533 45556666654
No 52
>KOG1060|consensus
Probab=71.69 E-value=9.9 Score=35.84 Aligned_cols=54 Identities=11% Similarity=0.124 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIG 94 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia 94 (115)
.|+.||.+.|+||.+|= .+++|.=. +++-.+-.|++|.-|-|==.++-++++++
T Consensus 155 ~s~yVRk~AA~AIpKLY-sLd~e~k~-qL~e~I~~LLaD~splVvgsAv~AF~evC 208 (968)
T KOG1060|consen 155 PSPYVRKTAAHAIPKLY-SLDPEQKD-QLEEVIKKLLADRSPLVVGSAVMAFEEVC 208 (968)
T ss_pred CcHHHHHHHHHhhHHHh-cCChhhHH-HHHHHHHHHhcCCCCcchhHHHHHHHHhc
Confidence 34555555555555554 33433322 55555555555555555444444444443
No 53
>KOG1242|consensus
Probab=71.62 E-value=9.5 Score=34.27 Aligned_cols=73 Identities=21% Similarity=0.203 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhCh--hHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHH
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGP--TVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALD 111 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~--eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~ 111 (115)
.+..+|...++|.......+|+ |--.-.++|.++....|..+.||-.+..+.+.+...+....+..-+.|.|.
T Consensus 187 ~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~ 261 (569)
T KOG1242|consen 187 KSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLG 261 (569)
T ss_pred chhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHH
Confidence 4567777888888888888883 446678999999999999999999999999999888877666554444443
No 54
>KOG2171|consensus
Probab=71.12 E-value=16 Score=35.14 Aligned_cols=73 Identities=11% Similarity=0.081 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhh--hhcHHHHHHh
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVI--QSQVKPALDK 112 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v--~s~IkP~L~k 112 (115)
+.+.||-.++..|..++...-.+ -+..++|.+.+..+++.|+.|=.+...|..+...++++.. -..+++.+.+
T Consensus 92 ~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q 166 (1075)
T KOG2171|consen 92 TEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQ 166 (1075)
T ss_pred cchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHH
Confidence 45689999999999999998888 8999999999999999999999999999999888876421 1245555543
No 55
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=70.52 E-value=16 Score=27.30 Aligned_cols=57 Identities=12% Similarity=0.167 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHh-HhHHHHHhhhcCCCCcchhHHHHHHHHHhccccc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTA-NFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE 98 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~-~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~ 98 (115)
++..+|.+....+...... -.+. .+.+|+++.|..||.|.+|-.+.+.+..+.++.+
T Consensus 20 ~~~~vr~~Al~~l~~il~q---GLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 20 SDDSVRLAALQVLELILRQ---GLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred CCHHHHHHHHHHHHHHHhc---CCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 3457777766666554432 2333 5789999999999999999999999999877664
No 56
>KOG0915|consensus
Probab=69.84 E-value=11 Score=37.56 Aligned_cols=68 Identities=18% Similarity=0.204 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhhhChhHH--hHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHH
Q psy14017 44 RRIPQKYSSQIAEACGPTVT--ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALD 111 (115)
Q Consensus 44 R~t~l~aI~~La~~l~~eii--~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~ 111 (115)
|.+|++.|..|+.-+++|.+ ..+++-.++..++|..++||-..|.++..+++.-..+..++-+...+.
T Consensus 1253 kvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~ 1322 (1702)
T KOG0915|consen 1253 KVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLA 1322 (1702)
T ss_pred chhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 77899999999999999874 588999999999999999999999999999888776655555444443
No 57
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=69.65 E-value=8 Score=32.96 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGP 95 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~ 95 (115)
+++.||...+.++..+... ..+|.+....+|+.|+||+.++.++..++.
T Consensus 159 ~d~~Vra~A~raLG~l~~~--------~a~~~L~~al~d~~~~VR~aA~~al~~lG~ 207 (410)
T TIGR02270 159 EDALVRAAALRALGELPRR--------LSESTLRLYLRDSDPEVRFAALEAGLLAGS 207 (410)
T ss_pred CCHHHHHHHHHHHHhhccc--------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence 4456666666666555432 445566677888999999988888877753
No 58
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=69.24 E-value=13 Score=34.44 Aligned_cols=57 Identities=16% Similarity=0.192 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHh-HHHHHhhhcCCCCcchhHHHHHHHHHhccc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANF-LLPTVLNMAGDNVANVRFNVAKTLQKIGPI 96 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~-ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~ 96 (115)
++++||.+++.|+-.+= .++++...+. ..-....++.|+.|+|--|+.-+|..+-+.
T Consensus 139 ~~ayVRk~Aalav~kly-~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 139 PHAYVRKTAALAVAKLY-RLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred CcHHHHHHHHHHHHHHH-hcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 46799999999999886 4677877777 888888999999999999999999988665
No 59
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=67.95 E-value=18 Score=23.81 Aligned_cols=54 Identities=15% Similarity=0.131 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhh-hChhHHh-HhHHHHHhhhcC-CCCcchhHHHHHHHHHhccccc
Q psy14017 45 RIPQKYSSQIAEA-CGPTVTA-NFLLPTVLNMAG-DNVANVRFNVAKTLQKIGPILE 98 (115)
Q Consensus 45 ~t~l~aI~~La~~-l~~eii~-~~ILPivl~L~k-D~VPNVRfNVAK~L~~Ia~~l~ 98 (115)
.+.+.|+.-++.. .|-+.+. ..++|.+.+++. .++..||..+.-+|..++.+..
T Consensus 5 KaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~ 61 (73)
T PF14668_consen 5 KAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEE 61 (73)
T ss_pred HHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHH
Confidence 3456666666554 6666666 479999999876 9999999999999999987654
No 60
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=67.45 E-value=36 Score=24.82 Aligned_cols=60 Identities=12% Similarity=0.199 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHHHHhhhCh----hHHhHhHHHHHhhhcCC-CCcchhHHHHHHHHHhcccccc
Q psy14017 40 SAEIRRIPQKYSSQIAEACGP----TVTANFLLPTVLNMAGD-NVANVRFNVAKTLQKIGPILET 99 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~~----eii~~~ILPivl~L~kD-~VPNVRfNVAK~L~~Ia~~l~~ 99 (115)
+++|=.-.+.-+..+...||. |+..+.++..+.+++++ ..++||-.+...++.++.....
T Consensus 50 n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 50 DPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 456666666777788888885 77889999999999999 8889999999999999877764
No 61
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=65.77 E-value=1.6 Score=31.11 Aligned_cols=28 Identities=18% Similarity=0.185 Sum_probs=21.9
Q ss_pred HHHhhhcCCCCcchhHHHHHHHHHhccc
Q psy14017 69 PTVLNMAGDNVANVRFNVAKTLQKIGPI 96 (115)
Q Consensus 69 Pivl~L~kD~VPNVRfNVAK~L~~Ia~~ 96 (115)
..++.|+++|.++||+++|+....+.+.
T Consensus 50 ~aLl~LL~hpn~~VRl~AA~~~L~~~p~ 77 (106)
T PF09450_consen 50 DALLPLLKHPNMQVRLWAAAHTLRYAPE 77 (106)
T ss_dssp GGGGGGGGSS-HHHHHHHHHTTTTT-HH
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHhCHH
Confidence 4567899999999999999988777654
No 62
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=64.85 E-value=16 Score=29.19 Aligned_cols=74 Identities=16% Similarity=0.253 Sum_probs=52.4
Q ss_pred eeecCCcccccccCCCccccchhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhh-cCCC-CcchhHHHHHHHHHhcc
Q psy14017 18 VRDLGGLGRFGLGLTSEDESIESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNM-AGDN-VANVRFNVAKTLQKIGP 95 (115)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L-~kD~-VPNVRfNVAK~L~~Ia~ 95 (115)
+||+||+...+-=+.+ +++.+|...+.|+.-++..-......+..++-+.+. ..++ ..++.....+.|..+.-
T Consensus 50 Ir~~Ggi~lI~~lL~~-----p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv 124 (254)
T PF04826_consen 50 IRDLGGISLIGSLLND-----PNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTV 124 (254)
T ss_pred HHHcCCHHHHHHHcCC-----CChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCC
Confidence 5899999888765544 457899999999999988876555566677777774 3333 35566666688887754
Q ss_pred c
Q psy14017 96 I 96 (115)
Q Consensus 96 ~ 96 (115)
.
T Consensus 125 ~ 125 (254)
T PF04826_consen 125 T 125 (254)
T ss_pred C
Confidence 3
No 63
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=63.81 E-value=11 Score=22.04 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=21.8
Q ss_pred HhHhHHHHHhhhcCCCCcchhHHHHH
Q psy14017 63 TANFLLPTVLNMAGDNVANVRFNVAK 88 (115)
Q Consensus 63 i~~~ILPivl~L~kD~VPNVRfNVAK 88 (115)
..+.+...+.+-+.|+-|.||=.+..
T Consensus 15 ~~~~v~~~i~~rl~D~s~~VR~aav~ 40 (42)
T PF12765_consen 15 DSSDVQSAIIRRLSDSSPSVREAAVD 40 (42)
T ss_pred chHHHHHHHHHHhcCCChHHHHHHHH
Confidence 34689999999999999999977654
No 64
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=63.69 E-value=36 Score=26.25 Aligned_cols=57 Identities=14% Similarity=0.119 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHhhhChhH---HhHhHHHHHhhhcCCCCcchhHHHHHHHHHh---ccccc
Q psy14017 42 EIRRIPQKYSSQIAEACGPTV---TANFLLPTVLNMAGDNVANVRFNVAKTLQKI---GPILE 98 (115)
Q Consensus 42 ~VR~t~l~aI~~La~~l~~ei---i~~~ILPivl~L~kD~VPNVRfNVAK~L~~I---a~~l~ 98 (115)
.+|.-.-.++..|-...+.+. +..++++.+.+.++-+.|.|.-++.++|+.+ .+.++
T Consensus 53 Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 53 PYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 456666677777776634443 3356666677788899999999999999999 65555
No 65
>KOG0213|consensus
Probab=63.06 E-value=19 Score=34.24 Aligned_cols=65 Identities=23% Similarity=0.314 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCC-CcchhHHHHHHHHHhcccccchhhhhcHHHH
Q psy14017 40 SAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDN-VANVRFNVAKTLQKIGPILETNVIQSQVKPA 109 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~-VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~ 109 (115)
-++||.+++.|+...+.++|.+ .++|++-..++.. .-.-|-...|+.++|+..++-..+ +.++|.
T Consensus 489 deYVRnttarafavvasalgip----~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvl-phl~~l 554 (1172)
T KOG0213|consen 489 DEYVRNTTARAFAVVASALGIP----ALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVL-PHLKPL 554 (1172)
T ss_pred cHHHHHHHHHHHHHHHHHhCcH----HHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhh-hhhHHH
Confidence 3699999999999999999865 7899999998887 788899999999999988775543 444443
No 66
>KOG1949|consensus
Probab=62.34 E-value=13 Score=34.95 Aligned_cols=72 Identities=25% Similarity=0.197 Sum_probs=51.3
Q ss_pred hHHHHHHHHHH----HHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHH
Q psy14017 40 SAEIRRIPQKY----SSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALD 111 (115)
Q Consensus 40 s~~VR~t~l~a----I~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~ 111 (115)
-|-||.+.... +...=+.+++.++.+-+--++-.+++|.+.+||..|.+.|..+...-..-.+-++++|+|.
T Consensus 233 ~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~ 308 (1005)
T KOG1949|consen 233 YPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALR 308 (1005)
T ss_pred CchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcc
Confidence 34567665443 3444456788888887778888899999999999999999988765444444456666654
No 67
>KOG2956|consensus
Probab=60.81 E-value=18 Score=32.07 Aligned_cols=72 Identities=18% Similarity=0.184 Sum_probs=56.5
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhhChhHH---hHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHH
Q psy14017 34 EDESIESAEIRRIPQKYSSQIAEACGPTVT---ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPAL 110 (115)
Q Consensus 34 ~~~~~~s~~VR~t~l~aI~~La~~l~~eii---~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L 110 (115)
+||.+.+. +....+++.+-+.+|.+ ...|.|.+++.....-..||=.+.-||-.+-..+|. +.++|.|
T Consensus 418 ~D~~~~~~-----~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~----~~mePhL 488 (516)
T KOG2956|consen 418 ADEPRAVA-----VIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGM----EEMEPHL 488 (516)
T ss_pred CcchHHHH-----HHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhH----HhhhhHh
Confidence 55554433 33467788888888874 478999999999999999999999999999887775 5567778
Q ss_pred Hhhh
Q psy14017 111 DKLN 114 (115)
Q Consensus 111 ~kL~ 114 (115)
++|.
T Consensus 489 ~~Lt 492 (516)
T KOG2956|consen 489 EQLT 492 (516)
T ss_pred hhcc
Confidence 7764
No 68
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=57.85 E-value=16 Score=25.56 Aligned_cols=53 Identities=15% Similarity=0.102 Sum_probs=37.0
Q ss_pred HHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHhhh
Q psy14017 62 VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLN 114 (115)
Q Consensus 62 ii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~kL~ 114 (115)
...+-.++++++-+.|+.++|.-.+.+.|...+..-..-..--..+|.|..|+
T Consensus 4 ~f~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~~~p~l~~L~ 56 (115)
T PF14663_consen 4 DFEDWGIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVSLRPSLDHLG 56 (115)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHHcCcHHHHHH
Confidence 35566788899999999999999999998888765421111133467776664
No 69
>KOG1248|consensus
Probab=57.83 E-value=28 Score=33.86 Aligned_cols=66 Identities=21% Similarity=0.265 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHh---HHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhh
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANF---LLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQS 104 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~---ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s 104 (115)
+++++|.+..-.+..+...++.+.+..+ +||.++.+.+|.--++|..|---|+++..+.+.+.+++
T Consensus 839 ~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~ 907 (1176)
T KOG1248|consen 839 NSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELES 907 (1176)
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHh
Confidence 5789999999999999999998887754 69999999999999999999999999999988876644
No 70
>KOG1061|consensus
Probab=57.43 E-value=24 Score=32.69 Aligned_cols=59 Identities=14% Similarity=0.123 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPIL 97 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l 97 (115)
.++.||.+++.++..+-..=..-....-+++.+..+..|+.|-|=-|+..+|..|.+.-
T Consensus 133 ~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 133 DDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred CChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence 35789999999998887554444455788999999999999999888888888886554
No 71
>KOG2259|consensus
Probab=57.35 E-value=29 Score=32.33 Aligned_cols=68 Identities=16% Similarity=0.100 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHh
Q psy14017 41 AEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDK 112 (115)
Q Consensus 41 ~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~k 112 (115)
.-||.-+.+++..++.. -.+.+..|+.++..+.|..+|||-+.-.-|+ .+...+.+.+.--+.-.|..
T Consensus 424 ~~VRL~ai~aL~~Is~~---l~i~eeql~~il~~L~D~s~dvRe~l~elL~-~~~~~d~~~i~m~v~~lL~~ 491 (823)
T KOG2259|consen 424 EVVRLKAIFALTMISVH---LAIREEQLRQILESLEDRSVDVREALRELLK-NARVSDLECIDMCVAHLLKN 491 (823)
T ss_pred HHHHHHHHHHHHHHHHH---heecHHHHHHHHHHHHhcCHHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHH
Confidence 47999999999999987 4578999999999999999999987644443 34444444443333333333
No 72
>KOG1967|consensus
Probab=55.45 E-value=29 Score=33.26 Aligned_cols=64 Identities=20% Similarity=0.240 Sum_probs=48.0
Q ss_pred cchhHHHHHHHHHHHHHHHhhhChhH--HhHhHHHHHhhhcCCCCcc---hhHHHHHHHHHhcccccch
Q psy14017 37 SIESAEIRRIPQKYSSQIAEACGPTV--TANFLLPTVLNMAGDNVAN---VRFNVAKTLQKIGPILETN 100 (115)
Q Consensus 37 ~~~s~~VR~t~l~aI~~La~~l~~ei--i~~~ILPivl~L~kD~VPN---VRfNVAK~L~~Ia~~l~~~ 100 (115)
|....-||-+.+.++..+-...+.-. =..++.|.++.+.+|+.-| ||..+.++|..+...+...
T Consensus 919 s~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~ 987 (1030)
T KOG1967|consen 919 SMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTK 987 (1030)
T ss_pred CCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCc
Confidence 34455678888888776654433222 2368999999999999977 9999999999999876554
No 73
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=55.10 E-value=21 Score=32.99 Aligned_cols=79 Identities=23% Similarity=0.218 Sum_probs=63.0
Q ss_pred eeeeecCCcccccccCCCccc---------cchhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHH
Q psy14017 16 ISVRDLGGLGRFGLGLTSEDE---------SIESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNV 86 (115)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~---------~~~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNV 86 (115)
|.||=||=|||=|---..... -.++.+||.+...|+++.+-....-...+.+...+.+.++|..-+||=.+
T Consensus 467 I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrA 546 (898)
T COG5240 467 ITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRA 546 (898)
T ss_pred HHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHH
Confidence 567778888887643322211 24788999999999999998888778889999999999999999999999
Q ss_pred HHHHHHhc
Q psy14017 87 AKTLQKIG 94 (115)
Q Consensus 87 AK~L~~Ia 94 (115)
+-.++-+-
T Consensus 547 sf~l~~~~ 554 (898)
T COG5240 547 SFLLRNMR 554 (898)
T ss_pred HHHHHhhh
Confidence 98888663
No 74
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=53.40 E-value=7.4 Score=20.47 Aligned_cols=14 Identities=43% Similarity=0.591 Sum_probs=5.9
Q ss_pred hhHHHHHHHHHhcc
Q psy14017 82 VRFNVAKTLQKIGP 95 (115)
Q Consensus 82 VRfNVAK~L~~Ia~ 95 (115)
||..++++|..+..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 34444444444444
No 75
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=52.69 E-value=63 Score=24.94 Aligned_cols=62 Identities=16% Similarity=0.139 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHH---HhhhChhHH--hHhHHHHHhhhc--C---------CCCcchhHHHHHHHHHhcccccchh
Q psy14017 40 SAEIRRIPQKYSSQI---AEACGPTVT--ANFLLPTVLNMA--G---------DNVANVRFNVAKTLQKIGPILETNV 101 (115)
Q Consensus 40 s~~VR~t~l~aI~~L---a~~l~~eii--~~~ILPivl~L~--k---------D~VPNVRfNVAK~L~~Ia~~l~~~~ 101 (115)
++.|..+++.+++.| ++.+|.+.+ ..++||.+--+. + ..-.|++=-+..+|+.+-..-+.+.
T Consensus 93 ~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA 170 (183)
T PF10274_consen 93 DPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDA 170 (183)
T ss_pred CHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhH
Confidence 568899999999999 888886654 388888887322 2 3457777778888888777666653
No 76
>KOG1062|consensus
Probab=52.61 E-value=35 Score=32.15 Aligned_cols=51 Identities=16% Similarity=0.130 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccccc
Q psy14017 47 PQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE 98 (115)
Q Consensus 47 ~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~ 98 (115)
+..|++.++..+++| ....+.|-|-++++-+-|+||-.++-|+-.+..+..
T Consensus 124 VglAL~alg~i~s~E-mardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P 174 (866)
T KOG1062|consen 124 VGLALCALGNICSPE-MARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP 174 (866)
T ss_pred hHHHHHHhhccCCHH-HhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc
Confidence 557888888777777 778999999999999999999999999999887653
No 77
>KOG0567|consensus
Probab=52.15 E-value=11 Score=31.13 Aligned_cols=78 Identities=23% Similarity=0.280 Sum_probs=50.0
Q ss_pred CCCCCeeeeeeeeeecCCcccc-cccCCCccccchhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCC--CCcch
Q psy14017 6 PRYGDYLRVGISVRDLGGLGRF-GLGLTSEDESIESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGD--NVANV 82 (115)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD--~VPNV 82 (115)
|-|-.| |.=..+||.||=--. .+.=+..++ |..+|-.++|++.+|-.- .=+|.+.+-+.| +.|=|
T Consensus 169 ~l~~Ry-~amF~LRn~g~EeaI~al~~~l~~~---SalfrhEvAfVfGQl~s~--------~ai~~L~k~L~d~~E~pMV 236 (289)
T KOG0567|consen 169 PLFERY-RAMFYLRNIGTEEAINALIDGLADD---SALFRHEVAFVFGQLQSP--------AAIPSLIKVLLDETEHPMV 236 (289)
T ss_pred hHHHHH-hhhhHhhccCcHHHHHHHHHhcccc---hHHHHHHHHHHHhhccch--------hhhHHHHHHHHhhhcchHH
Confidence 444455 667788999874321 112222333 889999999999877544 234555554444 56778
Q ss_pred hHHHHHHHHHhcc
Q psy14017 83 RFNVAKTLQKIGP 95 (115)
Q Consensus 83 RfNVAK~L~~Ia~ 95 (115)
|--+|++|..|+.
T Consensus 237 RhEaAeALGaIa~ 249 (289)
T KOG0567|consen 237 RHEAAEALGAIAD 249 (289)
T ss_pred HHHHHHHHHhhcC
Confidence 8888888887774
No 78
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=51.96 E-value=67 Score=21.23 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHH--hHhHHHHHhhhcCCCCcchhHHHHHHHH
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVT--ANFLLPTVLNMAGDNVANVRFNVAKTLQ 91 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii--~~~ILPivl~L~kD~VPNVRfNVAK~L~ 91 (115)
++..+|.-++.|+.++....+...- ++.++-++...++|+..++=-...++++
T Consensus 30 ~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 30 PSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred CcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 5667888888888888887775442 2556666666677766665544444443
No 79
>KOG4224|consensus
Probab=51.84 E-value=8.8 Score=33.65 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccccc
Q psy14017 40 SAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE 98 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~ 98 (115)
+-+-|++.++++-.+++.-.......-|+|+++.+..|...+||=|.|.+|..+....+
T Consensus 391 svqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~ 449 (550)
T KOG4224|consen 391 SVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVE 449 (550)
T ss_pred hHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhH
Confidence 34557777777777777766666778899999999999999999999999998877654
No 80
>KOG1060|consensus
Probab=50.58 E-value=50 Score=31.41 Aligned_cols=55 Identities=20% Similarity=0.164 Sum_probs=44.1
Q ss_pred cchhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcc
Q psy14017 37 SIESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGP 95 (115)
Q Consensus 37 ~~~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~ 95 (115)
.-.||.+|.+.+.++..+--. .+..-+|-.|.+++.|+-|-||-++|-++.++-.
T Consensus 118 ~DpN~LiRasALRvlSsIRvp----~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs 172 (968)
T KOG1060|consen 118 KDPNQLIRASALRVLSSIRVP----MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS 172 (968)
T ss_pred cCCcHHHHHHHHHHHHhcchh----hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc
Confidence 347899999888777655432 5666777788899999999999999999988853
No 81
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=50.56 E-value=24 Score=32.97 Aligned_cols=63 Identities=24% Similarity=0.266 Sum_probs=53.5
Q ss_pred cchhHHHHHHHHHHHHHHHhhhChhHHh--HhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc
Q psy14017 37 SIESAEIRRIPQKYSSQIAEACGPTVTA--NFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET 99 (115)
Q Consensus 37 ~~~s~~VR~t~l~aI~~La~~l~~eii~--~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~ 99 (115)
|--|-.-|-|+-.++++++..+|..... .-++..+.++++|+---||+..|.+|..+++..++
T Consensus 327 SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~P 391 (975)
T COG5181 327 SRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGP 391 (975)
T ss_pred CccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCC
Confidence 4456678889999999999999977654 56777888999999999999999999999988765
No 82
>KOG2005|consensus
Probab=50.19 E-value=34 Score=32.02 Aligned_cols=53 Identities=19% Similarity=0.153 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGP 95 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~ 95 (115)
.+|+.|.++-.|+..|+..-++ -.++.++.++++|..+||-.|..-++.-++.
T Consensus 652 ge~~iRravPLal~llsvSNPq----~~vlDtLsk~shd~D~eva~naIfamGLiGA 704 (878)
T KOG2005|consen 652 GEPHIRRAVPLALGLLSVSNPQ----VNVLDTLSKFSHDGDLEVAMNAIFAMGLIGA 704 (878)
T ss_pred CCHHHHHHHHHHHhhhccCCCc----chHHHHHHHhccCcchHHHHHHHHHhccccC
Confidence 3568999999999988866443 3688999999999999999999999887754
No 83
>KOG0213|consensus
Probab=48.43 E-value=54 Score=31.36 Aligned_cols=75 Identities=24% Similarity=0.175 Sum_probs=59.7
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhChhHHh--HhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc---hhhhhcHHHHH
Q psy14017 36 ESIESAEIRRIPQKYSSQIAEACGPTVTA--NFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET---NVIQSQVKPAL 110 (115)
Q Consensus 36 ~~~~s~~VR~t~l~aI~~La~~l~~eii~--~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~---~~v~s~IkP~L 110 (115)
.|--|-+-|-|+-.++++++..+|..+.. +-++-++-++++|+-.-||.-.|-++..+++...+ ..+.+-++|.-
T Consensus 521 ~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLw 600 (1172)
T KOG0213|consen 521 GSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLW 600 (1172)
T ss_pred ccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 35556788999999999999999887654 66777888999999999999999999999887654 35555555543
No 84
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=47.85 E-value=34 Score=26.94 Aligned_cols=47 Identities=19% Similarity=0.204 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhc
Q psy14017 42 EIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIG 94 (115)
Q Consensus 42 ~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia 94 (115)
.||...++++..+.... ..+.+.+.+...|+..+||...++.+..+.
T Consensus 195 ~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~ 241 (335)
T COG1413 195 DVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIG 241 (335)
T ss_pred HHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccC
Confidence 56666666666655443 456677777777777777777777776654
No 85
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=47.74 E-value=35 Score=35.23 Aligned_cols=72 Identities=18% Similarity=0.213 Sum_probs=48.9
Q ss_pred ecCCcccccccCCCccccchhHHHHHHHHHHHHHHHhh---hChhHHhHhHHHHHhhhcC-CCCcchhHHHHHHHHHhcc
Q psy14017 20 DLGGLGRFGLGLTSEDESIESAEIRRIPQKYSSQIAEA---CGPTVTANFLLPTVLNMAG-DNVANVRFNVAKTLQKIGP 95 (115)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~s~~VR~t~l~aI~~La~~---l~~eii~~~ILPivl~L~k-D~VPNVRfNVAK~L~~Ia~ 95 (115)
|.|++-.+--.+.+++ +..+..++.++..++.. .-..++....+|.+.++++ ++.++||++++.+|..|+.
T Consensus 187 eaGaVp~LV~LLsS~d-----~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs 261 (2102)
T PLN03200 187 EAGGVDILVKLLSSGN-----SDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSS 261 (2102)
T ss_pred HcCCHHHHHHHHcCCC-----HHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhc
Confidence 4566665555555433 44455555555444432 3345567888999999996 4667999999999999986
Q ss_pred c
Q psy14017 96 I 96 (115)
Q Consensus 96 ~ 96 (115)
.
T Consensus 262 ~ 262 (2102)
T PLN03200 262 Q 262 (2102)
T ss_pred C
Confidence 4
No 86
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=47.05 E-value=69 Score=21.62 Aligned_cols=49 Identities=10% Similarity=0.028 Sum_probs=24.3
Q ss_pred HhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhh-hcHHHHHH
Q psy14017 63 TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQ-SQVKPALD 111 (115)
Q Consensus 63 i~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~-s~IkP~L~ 111 (115)
+.+.+.-++........+++.-.+.+++..+..+++...+. +.+.+.+-
T Consensus 83 i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~ 132 (148)
T PF08389_consen 83 ILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIF 132 (148)
T ss_dssp HHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHH
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHH
Confidence 44444445555444445555556666666666666554332 23444443
No 87
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=46.84 E-value=39 Score=24.36 Aligned_cols=60 Identities=18% Similarity=0.188 Sum_probs=42.7
Q ss_pred CCccccchhHHHHHHHHHHHHHHHhhhCh-hHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccccc
Q psy14017 32 TSEDESIESAEIRRIPQKYSSQIAEACGP-TVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE 98 (115)
Q Consensus 32 ~~~~~~~~s~~VR~t~l~aI~~La~~l~~-eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~ 98 (115)
||.|+.-+.- +...++|+..-. ......++.++.+=++|.-|+|++.+.|.|.-++..-.
T Consensus 10 Tsdd~~p~pg-------y~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~ 70 (122)
T cd03572 10 TSDDDEPTPG-------YLYEEIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN 70 (122)
T ss_pred hcCCCCCCch-------HHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC
Confidence 5555554432 334455544332 24567999999999999999999999999999887654
No 88
>KOG2011|consensus
Probab=45.97 E-value=40 Score=32.54 Aligned_cols=57 Identities=18% Similarity=0.093 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccc
Q psy14017 40 SAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI 96 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~ 96 (115)
.+..|+.|...+..-....+.-.+....|-.+--.++|..-.||..+.|+|..+...
T Consensus 300 ~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~ 356 (1048)
T KOG2011|consen 300 DPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEK 356 (1048)
T ss_pred chHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhc
Confidence 478999999999999999998889999999999999999999999999999999765
No 89
>KOG1949|consensus
Probab=45.37 E-value=19 Score=33.92 Aligned_cols=56 Identities=25% Similarity=0.173 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIG 94 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia 94 (115)
++..||-++-.+++.+..+=-.--+.+.+||.+-.++.|.+..||.....-|..|-
T Consensus 275 t~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 275 TSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred cchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 45589999999999999886677788999999999999999999999988887774
No 90
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=44.19 E-value=47 Score=26.14 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=12.8
Q ss_pred hHHHHHhhhcCCCCcchhHHHHHHHHHh
Q psy14017 66 FLLPTVLNMAGDNVANVRFNVAKTLQKI 93 (115)
Q Consensus 66 ~ILPivl~L~kD~VPNVRfNVAK~L~~I 93 (115)
..+|.+.+++.|+.+.||-.++.+|..+
T Consensus 74 ~av~~l~~~l~d~~~~vr~~a~~aLg~~ 101 (335)
T COG1413 74 EAVPLLRELLSDEDPRVRDAAADALGEL 101 (335)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHcc
Confidence 3444444444444444444444444433
No 91
>KOG4535|consensus
Probab=43.70 E-value=61 Score=29.53 Aligned_cols=57 Identities=18% Similarity=0.128 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHhhhChh-HHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccccc
Q psy14017 42 EIRRIPQKYSSQIAEACGPT-VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE 98 (115)
Q Consensus 42 ~VR~t~l~aI~~La~~l~~e-ii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~ 98 (115)
.+|..+.+.++.||..++.- -..-++.-.|-....|++|.+...+++.+.++...+.
T Consensus 270 ~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv 327 (728)
T KOG4535|consen 270 PMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLI 327 (728)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHh
Confidence 58999999999999998843 3446778888889999999999999999999976654
No 92
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=43.44 E-value=43 Score=22.91 Aligned_cols=36 Identities=14% Similarity=0.102 Sum_probs=25.8
Q ss_pred HHhHhHHHHHhhhcC-CCCcchhHHHHHHHHHhcccc
Q psy14017 62 VTANFLLPTVLNMAG-DNVANVRFNVAKTLQKIGPIL 97 (115)
Q Consensus 62 ii~~~ILPivl~L~k-D~VPNVRfNVAK~L~~Ia~~l 97 (115)
.....++|++.+.++ ...|+.|...-=.+.+++.+.
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~ 38 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKV 38 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhc
Confidence 456678888888777 777888777766666665544
No 93
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=43.30 E-value=65 Score=33.37 Aligned_cols=74 Identities=8% Similarity=0.104 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHHHHhhhChhH----HhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch--hhhhcHHHHHHhh
Q psy14017 40 SAEIRRIPQKYSSQIAEACGPTV----TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN--VIQSQVKPALDKL 113 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~~ei----i~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~--~v~s~IkP~L~kL 113 (115)
+..+|...+.|+..++.....+. +....+|.++++++++.++++-.++.+|..+...-+.. ..+....|.|.++
T Consensus 664 ~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~l 743 (2102)
T PLN03200 664 TEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRV 743 (2102)
T ss_pred ChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHH
Confidence 44688899999999986544442 44678999999999999999999999999998766443 3456666776654
No 94
>PF12208 DUF3601: Domain of unknown function (DUF3601); InterPro: IPR022020 This domain family is found in bacteria, and is approximately 80 amino acids in length. ; PDB: 3G1J_B.
Probab=42.38 E-value=17 Score=24.68 Aligned_cols=21 Identities=38% Similarity=0.445 Sum_probs=11.6
Q ss_pred CCeeeeeeeeeecCCccccccc
Q psy14017 9 GDYLRVGISVRDLGGLGRFGLG 30 (115)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~ 30 (115)
|||+||+=+.||..| -.|..|
T Consensus 7 Gd~vkV~k~F~Dy~g-~~~~~G 27 (78)
T PF12208_consen 7 GDRVKVIKSFRDYDG-FTHKAG 27 (78)
T ss_dssp T-EEEE-S-EE-TT---EE-TT
T ss_pred CCEEEEeeeeEecCC-cEeCCC
Confidence 999999999999998 444444
No 95
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=42.32 E-value=55 Score=30.97 Aligned_cols=68 Identities=25% Similarity=0.276 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhCh-----------hHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcH
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGP-----------TVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQV 106 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~-----------eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~I 106 (115)
++.+.|.-++.|++.++-.+-+ -++.+-++.++..-..|.+..+||.+||.+.+++..+.-..-++.+
T Consensus 208 e~s~L~~~l~~~lS~lGi~llP~~~pi~sN~~sh~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi 286 (993)
T COG5234 208 ENSALRKLLCKCLSRLGIVLLPVNLPIDSNEESHIYLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFI 286 (993)
T ss_pred cHHHHHHHHHHHhhhcCceecccccCcccCcchhHHHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHH
Confidence 3446677778888877655433 3456777788888889999999999999999999888755444433
No 96
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=42.04 E-value=92 Score=25.32 Aligned_cols=53 Identities=13% Similarity=0.124 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhhhC----hhHHhHhHHHHHhhhcCCCC--cchhHHHHHHHHHhccc
Q psy14017 44 RRIPQKYSSQIAEACG----PTVTANFLLPTVLNMAGDNV--ANVRFNVAKTLQKIGPI 96 (115)
Q Consensus 44 R~t~l~aI~~La~~l~----~eii~~~ILPivl~L~kD~V--PNVRfNVAK~L~~Ia~~ 96 (115)
+...+.++..++-.+| .+.+.+.+.|.+.+.++|.- +++|..++.+|..+.=.
T Consensus 103 ~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv 161 (309)
T PF05004_consen 103 QALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFV 161 (309)
T ss_pred HHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHh
Confidence 4445566777776655 67788999999999999875 46777888888766433
No 97
>KOG1241|consensus
Probab=41.28 E-value=54 Score=30.89 Aligned_cols=36 Identities=28% Similarity=0.315 Sum_probs=32.0
Q ss_pred HhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccccc
Q psy14017 63 TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE 98 (115)
Q Consensus 63 i~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~ 98 (115)
+..+-+|.++.++.|+.-.||=..|-+|.++++.+.
T Consensus 403 iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~ 438 (859)
T KOG1241|consen 403 IVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP 438 (859)
T ss_pred HHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch
Confidence 447789999999999999999999999999987774
No 98
>KOG0212|consensus
Probab=40.53 E-value=43 Score=30.65 Aligned_cols=59 Identities=22% Similarity=0.257 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHhhhChhH--HhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch
Q psy14017 42 EIRRIPQKYSSQIAEACGPTV--TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN 100 (115)
Q Consensus 42 ~VR~t~l~aI~~La~~l~~ei--i~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~ 100 (115)
..|..-+-++-..+-++|.+. -.++++|.++....|+.--||+-++.+|-.+++..+..
T Consensus 58 n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~ 118 (675)
T KOG0212|consen 58 NMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGE 118 (675)
T ss_pred ccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccC
Confidence 345555555555555677665 46899999999999999999999999999998877654
No 99
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=40.03 E-value=1.5e+02 Score=23.77 Aligned_cols=56 Identities=7% Similarity=-0.205 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGP 95 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~ 95 (115)
+++....+.+.++..=...+ ...+.+.++..+.+-++|.-|+||--+..++..+..
T Consensus 35 ~nE~aL~~~l~al~~~~~~~-~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 35 SNEAALSALLSALFKHLFFL-SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred cCHHHHHHHHHHHHHHHHHh-CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence 34445555555555555555 345778999999999999999999999999988765
No 100
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=39.96 E-value=1.2e+02 Score=21.97 Aligned_cols=60 Identities=12% Similarity=0.112 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHHHhhhCh----hHHhHhHHHHHhhhcCC------CCcchhHHHHHHHHHhcccccc
Q psy14017 40 SAEIRRIPQKYSSQIAEACGP----TVTANFLLPTVLNMAGD------NVANVRFNVAKTLQKIGPILET 99 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~~----eii~~~ILPivl~L~kD------~VPNVRfNVAK~L~~Ia~~l~~ 99 (115)
++++=+-.+..+..+...||. ++..+.++.-+.+++++ ..++||-.+...++.++..+..
T Consensus 51 n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 120 (139)
T cd03567 51 QEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELPH 120 (139)
T ss_pred CHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 344444455556677777774 56778999999999864 5689999999999999887753
No 101
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=39.61 E-value=50 Score=17.08 Aligned_cols=29 Identities=14% Similarity=0.216 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCC
Q psy14017 42 EIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDN 78 (115)
Q Consensus 42 ~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~ 78 (115)
.||...++++..+.. ..-+|.+.+.++|+
T Consensus 2 ~vR~~aa~aLg~~~~--------~~a~~~L~~~l~d~ 30 (30)
T smart00567 2 LVRHEAAFALGQLGD--------EEAVPALIKALEDE 30 (30)
T ss_pred HHHHHHHHHHHHcCC--------HhHHHHHHHHhcCC
Confidence 467777777776632 24445566666653
No 102
>KOG4413|consensus
Probab=38.62 E-value=76 Score=27.71 Aligned_cols=65 Identities=18% Similarity=0.057 Sum_probs=55.6
Q ss_pred ccchhHHHHHH---HHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch
Q psy14017 36 ESIESAEIRRI---PQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN 100 (115)
Q Consensus 36 ~~~~s~~VR~t---~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~ 100 (115)
-+..+..||.+ |..|+..|=.......+...+.|.+..-+.-+..-|+.-..|+...|.+..|.+
T Consensus 49 fgfeNenhrekttlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtn 116 (524)
T KOG4413|consen 49 FGFENENHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTN 116 (524)
T ss_pred cccccccccchhhhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchh
Confidence 45567789988 777778888888888899999999999999999999999999999998887754
No 103
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=38.09 E-value=62 Score=23.76 Aligned_cols=50 Identities=12% Similarity=0.025 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhhChh--HHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcc
Q psy14017 46 IPQKYSSQIAEACGPT--VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGP 95 (115)
Q Consensus 46 t~l~aI~~La~~l~~e--ii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~ 95 (115)
++..|++.+-..++.. ....+++|.+++.++...++.|=...+.|..+..
T Consensus 106 ~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 106 AVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 6666666666555533 3457888888888886666666666666655543
No 104
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=37.18 E-value=88 Score=28.12 Aligned_cols=55 Identities=13% Similarity=0.169 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccc
Q psy14017 40 SAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI 96 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~ 96 (115)
+...++-.++-|..-....+ ...+.-+..+++|+.|+.++||.++.|.|-.+++.
T Consensus 35 ~~k~K~Laaq~I~kffk~FP--~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~ 89 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKHFP--DLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKD 89 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC-G--GGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T
T ss_pred CHHHHHHHHHHHHHHHhhCh--hhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHh
Confidence 44555555565655555544 46677888999999999999999999999998864
No 105
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=35.84 E-value=99 Score=24.51 Aligned_cols=60 Identities=12% Similarity=0.124 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHH-----------hHhHHHHHhhhcCCCCcchhHHHHHHHHHh--ccccc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVT-----------ANFLLPTVLNMAGDNVANVRFNVAKTLQKI--GPILE 98 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii-----------~~~ILPivl~L~kD~VPNVRfNVAK~L~~I--a~~l~ 98 (115)
+...+|.+++.++..+.-.-|.+.+ ...++.++.+.+++..|++|..++..+.++ ...+.
T Consensus 76 ~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~ 148 (298)
T PF12719_consen 76 DDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRIS 148 (298)
T ss_pred CCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCC
Confidence 3678999999999988877664443 356888999999999999999999999996 44443
No 106
>cd08512 PBP2_NikA_DppA_OppA_like_7 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most si
Probab=35.19 E-value=25 Score=28.99 Aligned_cols=74 Identities=16% Similarity=0.234 Sum_probs=42.6
Q ss_pred cCCcccccccCCCccccchhHHHHHHHHHHHH--HHHhhh--ChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhc
Q psy14017 21 LGGLGRFGLGLTSEDESIESAEIRRIPQKYSS--QIAEAC--GPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIG 94 (115)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~s~~VR~t~l~aI~--~La~~l--~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia 94 (115)
..+.+-..+.+..+.+......||+++++||. .+...+ |.......++|.......+..+...++..|+-+.+.
T Consensus 249 ~~~~~~~~l~~N~~~~~~~d~~vR~Al~~aidr~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~A~~lL~ 326 (476)
T cd08512 249 LPSLTVFYLALNTKKAPFDNPKVRQAIAYAIDYDGIIDQVLKGQGKPHPGPLPDGLPGGAPDLPPYKYDLEKAKELLA 326 (476)
T ss_pred cCCceEEEEEeeCCCCCCCCHHHHHHHHHhcCHHHHHHHHhcCCceecCCCCCCCCCCcCccCCCCCCCHHHHHHHHH
Confidence 33444556677777778899999999999996 333322 122222333443322233445556677776665553
No 107
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=35.16 E-value=1.6e+02 Score=20.67 Aligned_cols=61 Identities=11% Similarity=0.206 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhCh----hHHhHhHHHHHhhhcCCC---CcchhHHHHHHHHHhcccccc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGP----TVTANFLLPTVLNMAGDN---VANVRFNVAKTLQKIGPILET 99 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~----eii~~~ILPivl~L~kD~---VPNVRfNVAK~L~~Ia~~l~~ 99 (115)
.++++..-.+..+..+...||. ++..+.++--+.+++.++ .++||-.+...+..++.....
T Consensus 49 ~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 49 GNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred CCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4678888888888899988886 334447777788888764 668999999999988877765
No 108
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=35.01 E-value=1e+02 Score=23.43 Aligned_cols=57 Identities=14% Similarity=0.206 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccccc
Q psy14017 41 AEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE 98 (115)
Q Consensus 41 ~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~ 98 (115)
-.+|-++-.|+-++-..+....-...++..+..-++| -++||.-+.-.+.+++....
T Consensus 41 LelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p 97 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAP 97 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-H
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCH
Confidence 4689999999999988888777788889999999999 99999999999988866543
No 109
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=34.63 E-value=1.4e+02 Score=19.94 Aligned_cols=70 Identities=14% Similarity=0.201 Sum_probs=53.1
Q ss_pred chhHHHHHHHHHHHHHHHhhhChh--HHhHhHHHHHhhhcCCCCcc--hhHHHHHHHHHhcccccchhhhhcHHHHHH
Q psy14017 38 IESAEIRRIPQKYSSQIAEACGPT--VTANFLLPTVLNMAGDNVAN--VRFNVAKTLQKIGPILETNVIQSQVKPALD 111 (115)
Q Consensus 38 ~~s~~VR~t~l~aI~~La~~l~~e--ii~~~ILPivl~L~kD~VPN--VRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~ 111 (115)
.+.-..|--.+..+..++...+.. .+...+.-++.+.+.|+-.+ ..+-+...|..++ +++++.-|.|.|.
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG----~~~vr~~ilP~l~ 90 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG----PEAVRALILPNLK 90 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH----HHHHHHhhccCcC
Confidence 345688999999999999988854 47888999999988887654 4666777776664 4667777888764
No 110
>KOG2759|consensus
Probab=34.57 E-value=37 Score=29.75 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=22.6
Q ss_pred HHHhhhcCCCCcchhHHHHHHHHHhc
Q psy14017 69 PTVLNMAGDNVANVRFNVAKTLQKIG 94 (115)
Q Consensus 69 Pivl~L~kD~VPNVRfNVAK~L~~Ia 94 (115)
-.+.+|++-+.|||||++.++.+++.
T Consensus 412 e~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 412 ERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 35677899999999999999999875
No 111
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=34.22 E-value=1.3e+02 Score=21.27 Aligned_cols=62 Identities=11% Similarity=0.304 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhC----hhHHhHhHHHHHhhhcCCCCcc----hhHHHHHHHHHhcccccch
Q psy14017 39 ESAEIRRIPQKYSSQIAEACG----PTVTANFLLPTVLNMAGDNVAN----VRFNVAKTLQKIGPILETN 100 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~----~eii~~~ILPivl~L~kD~VPN----VRfNVAK~L~~Ia~~l~~~ 100 (115)
.++++-.-++..+..+...|| .++..+.++..+.++++++-.+ ||=.+.+.+..++.....+
T Consensus 54 ~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~ 123 (140)
T PF00790_consen 54 GNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFKSD 123 (140)
T ss_dssp SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCC
Confidence 456666666777777777776 4556677999999877654443 8999999999998887443
No 112
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=34.20 E-value=1.1e+02 Score=26.26 Aligned_cols=53 Identities=23% Similarity=0.149 Sum_probs=39.8
Q ss_pred chhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHh
Q psy14017 38 IESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKI 93 (115)
Q Consensus 38 ~~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~I 93 (115)
-.++++|.+...|+..++..++ +.+.+.++|++.+ .++.++||..+.-.|-.-
T Consensus 491 ~~~~~iR~~Av~Alr~~a~~~p-~~v~~~l~~i~~n--~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 491 PLSTFIRLAAILALRNLAKRDP-RKVQEVLLPIYLN--RAEPPEVRMAAVLVLMET 543 (574)
T ss_pred CCCHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHcC--CCCChHHHHHHHHHHHhc
Confidence 4578999999999999987554 5588888888854 446678998776555443
No 113
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=34.04 E-value=85 Score=26.77 Aligned_cols=27 Identities=19% Similarity=0.130 Sum_probs=17.0
Q ss_pred HHHHhhhcCCCCcchhHHHHHHHHHhc
Q psy14017 68 LPTVLNMAGDNVANVRFNVAKTLQKIG 94 (115)
Q Consensus 68 LPivl~L~kD~VPNVRfNVAK~L~~Ia 94 (115)
.+.++.+++|+.|.||-..+.+|..+.
T Consensus 149 ~~~L~~~L~d~d~~Vra~A~raLG~l~ 175 (410)
T TIGR02270 149 GPALEAALTHEDALVRAAALRALGELP 175 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhc
Confidence 345555566777777777766666654
No 114
>KOG4224|consensus
Probab=33.44 E-value=1.1e+02 Score=27.13 Aligned_cols=76 Identities=16% Similarity=0.244 Sum_probs=52.1
Q ss_pred chhHHHHHHHHHHHHHHHhh-hChhH---HhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch--hhhhcHHHHHH
Q psy14017 38 IESAEIRRIPQKYSSQIAEA-CGPTV---TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN--VIQSQVKPALD 111 (115)
Q Consensus 38 ~~s~~VR~t~l~aI~~La~~-l~~ei---i~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~--~v~s~IkP~L~ 111 (115)
.+.+-||--|..||..++-- ..... ...+++|.+.+|++|+.+.|+..++-+|.-++.-...+ .++.--+|.+.
T Consensus 219 s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv 298 (550)
T KOG4224|consen 219 SGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLV 298 (550)
T ss_pred cCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHH
Confidence 34556777777777766532 11112 22459999999999999999999999999987654332 44555566666
Q ss_pred hh
Q psy14017 112 KL 113 (115)
Q Consensus 112 kL 113 (115)
+|
T Consensus 299 ~L 300 (550)
T KOG4224|consen 299 EL 300 (550)
T ss_pred HH
Confidence 65
No 115
>KOG1517|consensus
Probab=32.49 E-value=1e+02 Score=30.52 Aligned_cols=57 Identities=12% Similarity=0.021 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHHHhhhChhHHh---HhHHHHHhhhcCCCCcchhHHHHHHHHHhccc
Q psy14017 40 SAEIRRIPQKYSSQIAEACGPTVTA---NFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI 96 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~~eii~---~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~ 96 (115)
-++.|+=++.|+..|=+.....-+. ..=---++.+++|++|+||-.+..+|..+...
T Consensus 613 ~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 613 EPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred cHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 6899999999999887665444332 11112345678999999999999999998765
No 116
>KOG2025|consensus
Probab=32.29 E-value=1.6e+02 Score=27.94 Aligned_cols=36 Identities=17% Similarity=0.104 Sum_probs=31.6
Q ss_pred hhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcc
Q psy14017 60 PTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGP 95 (115)
Q Consensus 60 ~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~ 95 (115)
.+.+.+.++-.+++....+.-+|||+|.+.+..+..
T Consensus 79 e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d 114 (892)
T KOG2025|consen 79 EEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSD 114 (892)
T ss_pred hhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhc
Confidence 344778889999999999999999999999998876
No 117
>cd08489 PBP2_NikA The substrate-binding component of an ABC-type nickel import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain of nickel transport system, which functions in the import of nickel and in the control of chemotactic response away from nickel. The ATP-binding cassette (ABC) type nickel transport system is comprised of five subunits NikABCDE: the two pore-forming integral inner membrane proteins NikB and NikC; the two inner membrane-associated proteins with ATPase activity NikD and NikE; and the periplasmic nickel binding NikA, the initial nickel receptor. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides,
Probab=32.19 E-value=40 Score=27.89 Aligned_cols=35 Identities=11% Similarity=0.025 Sum_probs=26.2
Q ss_pred eecCCcccccccCCCccccchhHHHHHHHHHHHHH
Q psy14017 19 RDLGGLGRFGLGLTSEDESIESAEIRRIPQKYSSQ 53 (115)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~s~~VR~t~l~aI~~ 53 (115)
+...+.+-+++.+........+..||.++++||..
T Consensus 235 ~~~~~~~~~~l~fN~~~~~~~d~~vR~Al~~aiDr 269 (488)
T cd08489 235 AVSEPTSTRFLALNTASEPLSDLKVREAINYAIDK 269 (488)
T ss_pred EEecCCceeEEEecCCCCccccHHHHHHHHHhcCH
Confidence 33344566677777777778999999999999853
No 118
>KOG1837|consensus
Probab=31.71 E-value=88 Score=31.63 Aligned_cols=51 Identities=20% Similarity=0.191 Sum_probs=40.3
Q ss_pred hHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch--hhhhcHHHHHHhhh
Q psy14017 64 ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN--VIQSQVKPALDKLN 114 (115)
Q Consensus 64 ~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~--~v~s~IkP~L~kL~ 114 (115)
.+.+.-=+++-..|.-+|+|+.+..+++.+...++.. ..-++..|.|.+|.
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ 1591 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELM 1591 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHH
Confidence 4444444556688999999999999999999999876 44588899998873
No 119
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=31.46 E-value=20 Score=27.91 Aligned_cols=43 Identities=33% Similarity=0.577 Sum_probs=19.6
Q ss_pred CccCCCCCCeeeeee----------eeeecCCcccccccCCCccccchhHHHHH
Q psy14017 2 AHIRPRYGDYLRVGI----------SVRDLGGLGRFGLGLTSEDESIESAEIRR 45 (115)
Q Consensus 2 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~s~~VR~ 45 (115)
..||||.|||.--.- ..+++| .--|=+|.-.+|.+++-+..+.
T Consensus 55 vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~G-adG~VfG~L~~dg~iD~~~~~~ 107 (201)
T PF03932_consen 55 VMIRPRGGDFVYSDEEIEIMKEDIRMLRELG-ADGFVFGALTEDGEIDEEALEE 107 (201)
T ss_dssp EE--SSSS-S---HHHHHHHHHHHHHHHHTT--SEEEE--BETTSSB-HHHHHH
T ss_pred EEECCCCCCccCCHHHHHHHHHHHHHHHHcC-CCeeEEEeECCCCCcCHHHHHH
Confidence 359999999874221 123343 2346678777788877654443
No 120
>cd08513 PBP2_thermophilic_Hb8_like The substrate-binding component of ABC-type thermophilic oligopeptide-binding protein Hb8-like import systems, contains the type 2 periplasmic binding fold. This family includes the substrate-binding domain of an ABC-type oligopeptide-binding protein Hb8 from Thermus thermophilius and its closest homologs from other bacteria. The structural topology of this substrate-binding domain is similar to those of DppA from Escherichia coli and OppA from Salmonella typhimurium, and thus belongs to the type 2 periplasmic binding fold protein (PBP2) superfamily. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. The type 2 periplasmic binding proteins are soluble ligand-binding components of ABC or tripartite ATP-independent transporter
Probab=31.35 E-value=37 Score=28.03 Aligned_cols=72 Identities=15% Similarity=0.129 Sum_probs=40.8
Q ss_pred CCcccccccCCCcc-ccchhHHHHHHHHHHHHH--HHhhh--ChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHh
Q psy14017 22 GGLGRFGLGLTSED-ESIESAEIRRIPQKYSSQ--IAEAC--GPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKI 93 (115)
Q Consensus 22 ~~~~~~~~~~~~~~-~~~~s~~VR~t~l~aI~~--La~~l--~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~I 93 (115)
.+.+-+.+.+.... +...++.||+++++||.. ++..+ |.......++|.-.....+..+...++..|+-+.|
T Consensus 240 ~~~~~~~l~~N~~~~~~~~d~~vR~Al~~aiDr~~i~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~d~~kAk~lL 316 (482)
T cd08513 240 PGSGYEYLAFNLTNHPILADVRVRQALAYAIDRDAIVKTLYGGKATPAPTPVPPGSWADDPLVPAYEYDPEKAKQLL 316 (482)
T ss_pred cCCcEEEEEEecCCCCccCCHHHHHHHHhhcCHHHHHHHHhcCccceeccCCCCCccccCCCcccCCCCHHHHHHHH
Confidence 33444556666666 778899999999999963 44332 22223334444333223344444566766665544
No 121
>KOG0567|consensus
Probab=31.01 E-value=99 Score=25.69 Aligned_cols=48 Identities=19% Similarity=0.185 Sum_probs=40.5
Q ss_pred chhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHh
Q psy14017 38 IESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKI 93 (115)
Q Consensus 38 ~~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~I 93 (115)
-+.+-||--+|+|+..++. +.-++++.+.++|+.+=||-.|.-+|...
T Consensus 231 ~E~pMVRhEaAeALGaIa~--------e~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 231 TEHPMVRHEAAEALGAIAD--------EDCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred hcchHHHHHHHHHHHhhcC--------HHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 3567899999999988775 36788899999999999999998888754
No 122
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=30.63 E-value=1.9e+02 Score=24.86 Aligned_cols=62 Identities=13% Similarity=0.064 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN 100 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~ 100 (115)
....-|.+.+.|+..+...+..+.....+-|+++.+++.+..=-|+-++=.+.+++......
T Consensus 99 ~v~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~ 160 (441)
T PF12054_consen 99 VVIRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKER 160 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccc
Confidence 55678999999999999999888777777789999999999999999999999998776543
No 123
>KOG2032|consensus
Probab=29.58 E-value=2e+02 Score=25.91 Aligned_cols=89 Identities=18% Similarity=0.138 Sum_probs=60.6
Q ss_pred ecCCcccccccCCCccccchhHHHHHHHHHHHHHHHhhhChhHHh---HhHHHHHhhhcCCCCcchhHHHHHHHHHhccc
Q psy14017 20 DLGGLGRFGLGLTSEDESIESAEIRRIPQKYSSQIAEACGPTVTA---NFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI 96 (115)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~s~~VR~t~l~aI~~La~~l~~eii~---~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~ 96 (115)
|.|-+|.|=+-+ ++..+-++.-.|..++.++..++.-++.+... +.+--++..|.+|...+|-+.+.|+|..+.+.
T Consensus 252 ~~~lL~s~~~~l-a~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~ 330 (533)
T KOG2032|consen 252 KTGLLGSVLLSL-ANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK 330 (533)
T ss_pred ccccHHHHHHHH-HHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence 344444443222 23334466689999999999998887765533 44445556678888899999999999999888
Q ss_pred ccchhhhhcHHHH
Q psy14017 97 LETNVIQSQVKPA 109 (115)
Q Consensus 97 l~~~~v~s~IkP~ 109 (115)
..+..+.+-.+|+
T Consensus 331 ~~~~~l~~~~l~i 343 (533)
T KOG2032|consen 331 ASNDDLESYLLNI 343 (533)
T ss_pred hhhcchhhhchhH
Confidence 8776555544443
No 124
>cd08514 PBP2_AppA_like The substrate-binding component of the oligopeptide-binding protein, AppA, from Bacillus subtilis contains the type 2 periplasmic-binding fold. This family represents the substrate-binding domain of the oligopeptide-binding protein, AppA, from Bacillus subtilis and its closest homologs from other bacteria and archaea. Bacillus subtilis has three ABC-type peptide transport systems, a dipeptide-binding protein (DppA) and two oligopeptide-binding proteins (OppA and AppA) with overlapping specificity. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and also is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains correspondin
Probab=28.87 E-value=64 Score=26.61 Aligned_cols=39 Identities=10% Similarity=0.110 Sum_probs=28.9
Q ss_pred eeeeeecCCcccccccCCCccccchhHHHHHHHHHHHHH
Q psy14017 15 GISVRDLGGLGRFGLGLTSEDESIESAEIRRIPQKYSSQ 53 (115)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~VR~t~l~aI~~ 53 (115)
|+.+....+.+-..+.+....+...++.||.++++||..
T Consensus 236 ~~~~~~~~~~~~~~l~~N~~~~~~~d~~vR~Al~~aidr 274 (483)
T cd08514 236 KINIYEYPSFSYTYLGWNLKRPLFQDKRVRQAITYAIDR 274 (483)
T ss_pred CceEEEcCCCcEEEEEecCCCcccCCHHHHHHHHHHhhH
Confidence 344555455555667777777888899999999999974
No 125
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=28.44 E-value=1.6e+02 Score=27.18 Aligned_cols=72 Identities=14% Similarity=0.092 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHhhhC--hhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc--hhhhhcHHHHHHhh
Q psy14017 41 AEIRRIPQKYSSQIAEACG--PTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET--NVIQSQVKPALDKL 113 (115)
Q Consensus 41 ~~VR~t~l~aI~~La~~l~--~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~--~~v~s~IkP~L~kL 113 (115)
+..|. +...+-.+|+... .....+.+++.+.++++.+.+++..++...|++++-.-++ ...++.+.|.|.+|
T Consensus 264 qLlrv-~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kL 339 (708)
T PF05804_consen 264 QLLRV-AFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKL 339 (708)
T ss_pred HHHHH-HHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHH
Confidence 34453 3344666666543 3346688999999999999999999999999999755443 35567777777765
No 126
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=28.36 E-value=1e+02 Score=26.74 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=28.6
Q ss_pred HHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc
Q psy14017 62 VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET 99 (115)
Q Consensus 62 ii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~ 99 (115)
.+.+.+||.++.-+..+.+.||=.|.+.++.+.+.+..
T Consensus 19 ~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~ 56 (501)
T PF13001_consen 19 QVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKS 56 (501)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhcc
Confidence 34455666666555667889999999999999888876
No 127
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=28.15 E-value=23 Score=28.59 Aligned_cols=41 Identities=29% Similarity=0.455 Sum_probs=22.7
Q ss_pred ccCCCCCCeeeee----eee------eecCCcccccccCCCccccchhHHHH
Q psy14017 3 HIRPRYGDYLRVG----ISV------RDLGGLGRFGLGLTSEDESIESAEIR 44 (115)
Q Consensus 3 ~~~~~~~~~~~~~----~~~------~~~~~~~~~~~~~~~~~~~~~s~~VR 44 (115)
-||||.|||.-=. +-. +++|- --|=+|.-.+|..++-...+
T Consensus 57 MIRPR~gdF~Ys~~E~~~M~~di~~~~~~Ga-dGvV~G~L~~dg~vD~~~~~ 107 (248)
T PRK11572 57 IIRPRGGDFCYSDGEFAAMLEDIATVRELGF-PGLVTGVLDVDGHVDMPRMR 107 (248)
T ss_pred EEecCCCCCCCCHHHHHHHHHHHHHHHHcCC-CEEEEeeECCCCCcCHHHHH
Confidence 4899999986321 112 23332 23456665666666655443
No 128
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=27.01 E-value=91 Score=25.47 Aligned_cols=42 Identities=12% Similarity=0.171 Sum_probs=31.3
Q ss_pred cccchhHHHHHHHHHHHHHHHhhhChhHHh----HhHHHHHhhhcC
Q psy14017 35 DESIESAEIRRIPQKYSSQIAEACGPTVTA----NFLLPTVLNMAG 76 (115)
Q Consensus 35 ~~~~~s~~VR~t~l~aI~~La~~l~~eii~----~~ILPivl~L~k 76 (115)
+.+.+.++.|.|.+-.|..|...-++|++. ..++|..++-++
T Consensus 104 ~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me 149 (262)
T PF04078_consen 104 SKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIME 149 (262)
T ss_dssp --SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHH
T ss_pred ccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHH
Confidence 445568899999999999999987788754 778898887554
No 129
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=26.94 E-value=2.4e+02 Score=20.27 Aligned_cols=61 Identities=10% Similarity=0.200 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHHhhhC----hhHHhHhHHHHHhhhcC-CCCcchhHHHHHHHHHhcccccch
Q psy14017 40 SAEIRRIPQKYSSQIAEACG----PTVTANFLLPTVLNMAG-DNVANVRFNVAKTLQKIGPILETN 100 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~----~eii~~~ILPivl~L~k-D~VPNVRfNVAK~L~~Ia~~l~~~ 100 (115)
++++=.-.+.-+..+...|| .++..+.++.-+.++++ ...++||=.+...++.++.....+
T Consensus 54 n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 54 NPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred ChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 34444444555566666766 46788999999999987 466689999999998888777643
No 130
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=26.45 E-value=2.4e+02 Score=19.91 Aligned_cols=61 Identities=10% Similarity=0.238 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHHHHhhhCh----hHHhHhHHHHHhhhcCCCCcc--hhHHHHHHHHHhcccccch
Q psy14017 40 SAEIRRIPQKYSSQIAEACGP----TVTANFLLPTVLNMAGDNVAN--VRFNVAKTLQKIGPILETN 100 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~~----eii~~~ILPivl~L~kD~VPN--VRfNVAK~L~~Ia~~l~~~ 100 (115)
++++=+-.+..+..+...||. ++..+.++..+.++++++.+. ||-.+...+..++..+.++
T Consensus 50 n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~~ 116 (133)
T smart00288 50 NPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKND 116 (133)
T ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCC
Confidence 455555556666677777664 556788999999998886653 8888888888888877543
No 131
>KOG1824|consensus
Probab=26.44 E-value=1.5e+02 Score=29.03 Aligned_cols=42 Identities=12% Similarity=0.196 Sum_probs=36.0
Q ss_pred HhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhh
Q psy14017 63 TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQS 104 (115)
Q Consensus 63 i~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s 104 (115)
...+++-++++++.|..++|.=-+.||+..+..+++...+++
T Consensus 44 Se~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~ 85 (1233)
T KOG1824|consen 44 SERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLET 85 (1233)
T ss_pred chhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHH
Confidence 457899999999999999999999999999998887654433
No 132
>KOG1058|consensus
Probab=26.44 E-value=45 Score=31.57 Aligned_cols=58 Identities=17% Similarity=0.138 Sum_probs=49.7
Q ss_pred cccchhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccc
Q psy14017 35 DESIESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI 96 (115)
Q Consensus 35 ~~~~~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~ 96 (115)
|-.-+++++|.+.+..+++|-+. .+.+.++|.+...+.-+.+=||-|+.-++-.|-+.
T Consensus 107 DLQHPNEyiRG~TLRFLckLkE~----ELlepl~p~IracleHrhsYVRrNAilaifsIyk~ 164 (948)
T KOG1058|consen 107 DLQHPNEYIRGSTLRFLCKLKEP----ELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN 164 (948)
T ss_pred hccCchHhhcchhhhhhhhcCcH----HHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh
Confidence 44557889999999999998876 68889999999999999999999998777776544
No 133
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=26.39 E-value=53 Score=28.44 Aligned_cols=46 Identities=17% Similarity=0.150 Sum_probs=31.7
Q ss_pred HHHHHHHhhh--ChhHHh-HhHHHHHhhhcCCCCcchhHHHHHHHHHhc
Q psy14017 49 KYSSQIAEAC--GPTVTA-NFLLPTVLNMAGDNVANVRFNVAKTLQKIG 94 (115)
Q Consensus 49 ~aI~~La~~l--~~eii~-~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia 94 (115)
+=|.+++... |+.++. -..-..+.+|++++.||||.++.+|.+++.
T Consensus 376 ~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 376 HDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred hhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3344444443 444433 225566889999999999999999999873
No 134
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=26.36 E-value=2.5e+02 Score=20.28 Aligned_cols=57 Identities=9% Similarity=0.006 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccc
Q psy14017 40 SAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPIL 97 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l 97 (115)
.+.+|+.++-++.++- ...++...+.+-.++..+..+.-.+-..++..++..+-+..
T Consensus 18 ~~~~r~~a~v~l~k~l-~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~ 74 (157)
T PF11701_consen 18 PEEVRSHALVILSKLL-DAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGP 74 (157)
T ss_dssp SCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTT
T ss_pred CHhHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCC
Confidence 4568999999998885 55567788999999999999988888999999998886654
No 135
>KOG1078|consensus
Probab=26.29 E-value=1e+02 Score=29.14 Aligned_cols=55 Identities=16% Similarity=0.130 Sum_probs=48.1
Q ss_pred chhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhc
Q psy14017 38 IESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIG 94 (115)
Q Consensus 38 ~~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia 94 (115)
..+..||.+...|+.+.+ .+.+.....|+-.+.+.+.|++-.||=.+.-.|..+-
T Consensus 477 LEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 477 LENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 367899999999999888 6677888999999999999999999999888887765
No 136
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=25.19 E-value=89 Score=26.97 Aligned_cols=54 Identities=24% Similarity=0.347 Sum_probs=35.5
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHH
Q psy14017 36 ESIESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQK 92 (115)
Q Consensus 36 ~~~~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~ 92 (115)
+.-.+.++|.+...|+..++..+ ++.+.+.++|++.+-..| ++||..+.-.|-.
T Consensus 533 ~~~~~~~~R~~Ai~Alr~~~~~~-~~~v~~~l~~I~~n~~e~--~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 533 KEEVPHFIRVAAIQALRRLAKHC-PEKVREILLPIFMNTTED--PEVRIAAYLILMR 586 (618)
T ss_dssp SS-S-HHHHHHHHHTTTTGGGT--HHHHHHHHHHHHH-TTS---HHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHhhcC-cHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHh
Confidence 33567799999999999886554 556777788877775554 6688877655443
No 137
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=24.65 E-value=1.3e+02 Score=27.95 Aligned_cols=54 Identities=19% Similarity=0.126 Sum_probs=43.6
Q ss_pred chhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcc
Q psy14017 38 IESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGP 95 (115)
Q Consensus 38 ~~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~ 95 (115)
..++|.|..+-.|...+++.-+ +-.++.++.+.++|..-||-.|..-++..++.
T Consensus 652 yg~~hiR~~~PLa~gils~SnP----Qm~vfDtL~r~shd~dl~v~~ntIfamGLiGA 705 (881)
T COG5110 652 YGSSHIRSVLPLAYGILSPSNP----QMNVFDTLERSSHDGDLNVIINTIFAMGLIGA 705 (881)
T ss_pred cCcHHHHHHHHHHHhcccCCCc----chHHHHHHHHhccccchhHHHHHHHHhhcccc
Confidence 3567889998888888887633 34678899999999999999999888887653
No 138
>KOG1837|consensus
Probab=24.54 E-value=1.4e+02 Score=30.22 Aligned_cols=61 Identities=15% Similarity=0.170 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHH--hHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVT--ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET 99 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii--~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~ 99 (115)
.+...|.....++..+...+|..++ ..+++|++-.++.|..-.|.-.+.|...++-+.+|.
T Consensus 1553 s~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE 1615 (1621)
T KOG1837|consen 1553 SSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGE 1615 (1621)
T ss_pred ccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhch
Confidence 3567899999999999999997764 489999999999999999999999988877776664
No 139
>cd08501 PBP2_Lpqw The substrate-binding domain of mycobacterial lipoprotein Lpqw contains type 2 periplasmic binding fold. LpqW is one of key players in synthesis and transport of the unique components of the mycobacterial cell wall which is a complex structure rich in two related lipoglycans, the phosphatidylinositol mannosides (PIMs) and lipoarabinomannans (LAMs). Lpqw is a highly conserved lipoprotein that transport intermediates from a pathway for mature PIMs production into a pathway for LAMs biosynthesis, thus controlling the relative abundance of these two essential components of cell wall. LpqW is thought to have been adapted by the cell-wall biosynthesis machinery of mycobacteria and other closely related pathogens, evolving to play an important role in PIMs/LAMs biosynthesis. Most of periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the LpqW protein. The structural topology of these domains is most similar to
Probab=24.15 E-value=60 Score=26.85 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=29.1
Q ss_pred eeeeeecCCcccccccCCCccccchhHHHHHHHHHHHHH
Q psy14017 15 GISVRDLGGLGRFGLGLTSEDESIESAEIRRIPQKYSSQ 53 (115)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~VR~t~l~aI~~ 53 (115)
++.+...-+.+-+++.+........++.||+++++||..
T Consensus 240 ~~~~~~~~~~~~~~l~~N~~~~~~~d~~vR~Ai~~aiDr 278 (486)
T cd08501 240 GVEVRTGDGPRYLHLTLNTKSPALADVAVRKAFLKAIDR 278 (486)
T ss_pred CeEEEEcCCCcEEEEEecCCCcccCCHHHHHHHHHhCCH
Confidence 334444455666677777777788899999999999964
No 140
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=24.08 E-value=2.6e+02 Score=23.44 Aligned_cols=55 Identities=15% Similarity=0.204 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET 99 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~ 99 (115)
....+|..|..+...|-.. .+.|+.++.-|+.++.|..+.+-.+.+..+.+.+..
T Consensus 259 ~~~~F~~~c~~~~~~lR~~------~~~il~l~~lm~~~~ip~~~~~~~~~i~~l~~rf~l 313 (350)
T cd00896 259 GYQEFKSYCCEAYNILRKS------ANLILNLFSLMVDANIPDIALDPDKAILKVQEKFRL 313 (350)
T ss_pred chHHHHHHHHHHHHHHHhC------HHHHHHHHHHHcCCCCcccccCHHHHHHHHHHHhCC
Confidence 4568999999999988766 356777777888999999987666666666555543
No 141
>cd08494 PBP2_NikA_DppA_OppA_like_6 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most si
Probab=24.08 E-value=52 Score=26.75 Aligned_cols=31 Identities=10% Similarity=0.210 Sum_probs=23.7
Q ss_pred CcccccccCCCccccchhHHHHHHHHHHHHH
Q psy14017 23 GLGRFGLGLTSEDESIESAEIRRIPQKYSSQ 53 (115)
Q Consensus 23 ~~~~~~~~~~~~~~~~~s~~VR~t~l~aI~~ 53 (115)
+.+-+.+++...........||.+++.||..
T Consensus 233 ~~~~~~l~~N~~~~~~~d~~vR~Al~~aidr 263 (448)
T cd08494 233 TTGKVLLAMNNARAPFDDVRVRQAIRYAIDR 263 (448)
T ss_pred CCceEEEEecCCCCCCCCHHHHHHHHHhcCH
Confidence 3445566676666788899999999999963
No 142
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=23.80 E-value=28 Score=27.97 Aligned_cols=9 Identities=78% Similarity=1.556 Sum_probs=7.3
Q ss_pred CCCCeeeee
Q psy14017 7 RYGDYLRVG 15 (115)
Q Consensus 7 ~~~~~~~~~ 15 (115)
.||||||-|
T Consensus 54 SyGDyLr~G 62 (231)
T COG0047 54 SYGDYLRAG 62 (231)
T ss_pred CcccccCcc
Confidence 599999954
No 143
>KOG0212|consensus
Probab=23.56 E-value=1.6e+02 Score=27.07 Aligned_cols=63 Identities=14% Similarity=0.125 Sum_probs=49.5
Q ss_pred cchhHHHHHHHHHHHHHHHhhhChhHHh--HhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc
Q psy14017 37 SIESAEIRRIPQKYSSQIAEACGPTVTA--NFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET 99 (115)
Q Consensus 37 ~~~s~~VR~t~l~aI~~La~~l~~eii~--~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~ 99 (115)
...++..|+.+..=+..|-.+=+-+.+. ..++|.+.+++.|+.++||-.+-.++..+-..+.+
T Consensus 177 y~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s 241 (675)
T KOG0212|consen 177 YVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRS 241 (675)
T ss_pred hcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc
Confidence 4457889999998888877665555544 88999999999999999998887777766555543
No 144
>KOG0166|consensus
Probab=23.49 E-value=1.5e+02 Score=26.44 Aligned_cols=70 Identities=20% Similarity=0.172 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhhhC---hhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch---hhhhcHHHHHHhh
Q psy14017 44 RRIPQKYSSQIAEACG---PTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN---VIQSQVKPALDKL 113 (115)
Q Consensus 44 R~t~l~aI~~La~~l~---~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~---~v~s~IkP~L~kL 113 (115)
...+.-+++.|+..-. +-...+.+||.+.+++++..++|.-.++-++.-+...-... +++..+.|.|.+|
T Consensus 212 lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~l 287 (514)
T KOG0166|consen 212 LRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDL 287 (514)
T ss_pred HHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHH
Confidence 3344556666654331 22678999999999999999999999999998887433211 5556666666654
No 145
>KOG1517|consensus
Probab=23.40 E-value=1.9e+02 Score=28.73 Aligned_cols=57 Identities=16% Similarity=0.121 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHHHHHHHhhh-----------------C-hhHHhHhHHH----HHhhhcCCCCcchhHHHHHHHHHhcc
Q psy14017 39 ESAEIRRIPQKYSSQIAEAC-----------------G-PTVTANFLLP----TVLNMAGDNVANVRFNVAKTLQKIGP 95 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l-----------------~-~eii~~~ILP----ivl~L~kD~VPNVRfNVAK~L~~Ia~ 95 (115)
+.+.||.+..||+..+-... + ++...++..+ .++.+.+|..|=||=.|+-+|..++-
T Consensus 654 ~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~ 732 (1387)
T KOG1517|consen 654 PVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVV 732 (1387)
T ss_pred ccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 67999999999999877642 1 1122455666 78889999999999999999887753
No 146
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=23.19 E-value=2.2e+02 Score=26.74 Aligned_cols=59 Identities=19% Similarity=0.118 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHhhhCh--hHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc
Q psy14017 41 AEIRRIPQKYSSQIAEACGP--TVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET 99 (115)
Q Consensus 41 ~~VR~t~l~aI~~La~~l~~--eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~ 99 (115)
-.||--+++-+..++.+++. |.+.+.++--+.+-.=|+-|-||..+.++|..+.+--++
T Consensus 105 k~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~n 165 (885)
T COG5218 105 KKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELN 165 (885)
T ss_pred hhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCC
Confidence 37999999999999999998 889999999999999999999999999999998765443
No 147
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=23.14 E-value=3e+02 Score=22.66 Aligned_cols=54 Identities=17% Similarity=0.151 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccccc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE 98 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~ 98 (115)
+|+.+..+... +..+...++.+.+.+.++=.++ ..|.+|..+..-+..--+...
T Consensus 151 ~sE~~~~~~~l-l~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~ 204 (307)
T PF04118_consen 151 GSEFFDRTLKL-LDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQ 204 (307)
T ss_pred CchHHHHHHHH-HHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhCCccc
Confidence 66666666544 8999999999999999998888 789999999888887665544
No 148
>PF13368 Toprim_C_rpt: Topoisomerase C-terminal repeat
Probab=22.87 E-value=45 Score=20.78 Aligned_cols=10 Identities=40% Similarity=1.032 Sum_probs=8.2
Q ss_pred CCCCCeeeee
Q psy14017 6 PRYGDYLRVG 15 (115)
Q Consensus 6 ~~~~~~~~~~ 15 (115)
=|||-|+..|
T Consensus 12 GRfGPYv~~g 21 (61)
T PF13368_consen 12 GRFGPYVKHG 21 (61)
T ss_pred CCCCceEEEC
Confidence 3899999776
No 149
>cd08518 PBP2_NikA_DppA_OppA_like_19 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most s
Probab=22.10 E-value=64 Score=26.62 Aligned_cols=78 Identities=10% Similarity=0.041 Sum_probs=41.2
Q ss_pred eeeeecCCcccccccCCCccc--------cchhHHHHHHHHHHHH--HHHhhhCh--hHHhHhHHHHHhhhcCCCCcchh
Q psy14017 16 ISVRDLGGLGRFGLGLTSEDE--------SIESAEIRRIPQKYSS--QIAEACGP--TVTANFLLPTVLNMAGDNVANVR 83 (115)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~--------~~~s~~VR~t~l~aI~--~La~~l~~--eii~~~ILPivl~L~kD~VPNVR 83 (115)
+.+....+.+-+.+.+....+ ......||+++++||. .+++.+-. ......+.|.. ....+..+...
T Consensus 218 ~~~~~~~~~~~~~l~~N~~~~~~~~~~~~~~~d~~vR~Ai~~aiDr~~i~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~ 296 (464)
T cd08518 218 YKLYSIKSADYRGISLPFVPATGKKIGNNVTSDPAIRKALNYAIDRQAIVDGVLNGYGTPAYSPPDGL-PWGNPDAAIYD 296 (464)
T ss_pred eeEEEecCCceEEEEEeccCCcccccccccccCHHHHHHHHhhcCHHHHHHHHhcCcceeecCCCCCC-CCCCCCcccCC
Confidence 344444555555666665555 6789999999999985 34433211 11112222221 11222344456
Q ss_pred HHHHHHHHHhc
Q psy14017 84 FNVAKTLQKIG 94 (115)
Q Consensus 84 fNVAK~L~~Ia 94 (115)
++..|+-+.|.
T Consensus 297 ~d~~~Ak~lL~ 307 (464)
T cd08518 297 YDPEKAKKILE 307 (464)
T ss_pred CCHHHHHHHHH
Confidence 77766655553
No 150
>KOG1991|consensus
Probab=21.96 E-value=3.8e+02 Score=26.08 Aligned_cols=75 Identities=21% Similarity=0.103 Sum_probs=59.3
Q ss_pred hhHHHHHHHHHHHHHHH-hhhChhHHhHhHHHHHhhhcC-CCCcchhHHHHHHHHHhcccccch--hhhhcHHHHHHhh
Q psy14017 39 ESAEIRRIPQKYSSQIA-EACGPTVTANFLLPTVLNMAG-DNVANVRFNVAKTLQKIGPILETN--VIQSQVKPALDKL 113 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La-~~l~~eii~~~ILPivl~L~k-D~VPNVRfNVAK~L~~Ia~~l~~~--~v~s~IkP~L~kL 113 (115)
+.-+-|.-.+..+.+.+ ..........+.+-.+.+.+. |+.==||...|-+|+.+....... .+..+|.|.+++|
T Consensus 474 ~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~l 552 (1010)
T KOG1991|consen 474 PYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQEL 552 (1010)
T ss_pred chhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHH
Confidence 34477888888888888 456666777888888888777 999999999999999997765432 4778888888876
No 151
>KOG1820|consensus
Probab=21.92 E-value=2.6e+02 Score=26.41 Aligned_cols=65 Identities=15% Similarity=0.137 Sum_probs=55.1
Q ss_pred cccchhHHHHHHHHHHHHHHHhhhChh--HHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc
Q psy14017 35 DESIESAEIRRIPQKYSSQIAEACGPT--VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET 99 (115)
Q Consensus 35 ~~~~~s~~VR~t~l~aI~~La~~l~~e--ii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~ 99 (115)
.+.-++-.|=|..+.+|..++..++.. .....+.|.++.-++|..+++|=...+++..+......
T Consensus 303 ~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l 369 (815)
T KOG1820|consen 303 RLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL 369 (815)
T ss_pred hccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH
Confidence 455677788999999999999998855 36688999999999999999999999999998875433
No 152
>KOG0417|consensus
Probab=21.62 E-value=99 Score=23.29 Aligned_cols=38 Identities=11% Similarity=0.136 Sum_probs=31.9
Q ss_pred HHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHH
Q psy14017 49 KYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNV 86 (115)
Q Consensus 49 ~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNV 86 (115)
-|+..|...-++....+++|=.+..|+.|+.|+.=++.
T Consensus 84 IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~ 121 (148)
T KOG0417|consen 84 ICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVP 121 (148)
T ss_pred chHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccH
Confidence 36677777788888899999999999999999986654
No 153
>KOG0915|consensus
Probab=21.27 E-value=3.3e+02 Score=27.98 Aligned_cols=71 Identities=11% Similarity=0.174 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc--hhhhhcHHHHH
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET--NVIQSQVKPAL 110 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~--~~v~s~IkP~L 110 (115)
-|+.+|.++++|+..|+..-..+..++.+--.+-.++.+.-++-...++-... |+..... +..++.|+|.+
T Consensus 1289 RNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~-Ian~s~e~Lkn~asaILPLi 1361 (1702)
T KOG0915|consen 1289 RNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISN-IANYSQEMLKNYASAILPLI 1361 (1702)
T ss_pred ccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHH-HHHhhHHHHHhhHHHHHHHH
Confidence 57889999999999999888887877777777777655555533555554444 5544321 24557777764
No 154
>cd00995 PBP2_NikA_DppA_OppA_like The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain of nickel/dipeptide/oligopeptide transport systems, which function in the import of nickel and peptides, and other closely related proteins. The oligopeptide-binding protein OppA is a periplasmic component of an ATP-binding cassette (ABC) transport system OppABCDEF consisting of five subunits: two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is inv
Probab=21.18 E-value=80 Score=25.47 Aligned_cols=77 Identities=16% Similarity=0.197 Sum_probs=42.6
Q ss_pred eeeecCCcccccccCCCccccchhHHHHHHHHHHHHH--HHhhh--ChhHHhHhHHHHHhh-hcCCCCcchhHHHHHHHH
Q psy14017 17 SVRDLGGLGRFGLGLTSEDESIESAEIRRIPQKYSSQ--IAEAC--GPTVTANFLLPTVLN-MAGDNVANVRFNVAKTLQ 91 (115)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~s~~VR~t~l~aI~~--La~~l--~~eii~~~ILPivl~-L~kD~VPNVRfNVAK~L~ 91 (115)
.+...-+.+-+.+.+....+....+.||.+++.||.. ++..+ |.......++|.-.. ...+..+...++..|+-+
T Consensus 231 ~~~~~~~~~~~~l~~N~~~~~~~d~~vR~Al~~aidr~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~kA~~ 310 (466)
T cd00995 231 RLVTVPSLGTGYLGFNTNKPPFDDKRVRQAISYAIDREEIIDAVLGGYGTPATSPLPPGSWGYYDKDLEPYEYDPEKAKE 310 (466)
T ss_pred eEEeccCCceEEEEeecCCCCCCCHHHHHHHHHhcCHHHHHHHHHhCCcccccCCCCCcccccCCcccCCCCCCHHHHHH
Confidence 3444445556677777777788999999999999953 33322 111222233332222 233444445566666555
Q ss_pred Hh
Q psy14017 92 KI 93 (115)
Q Consensus 92 ~I 93 (115)
.+
T Consensus 311 lL 312 (466)
T cd00995 311 LL 312 (466)
T ss_pred HH
Confidence 44
No 155
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=21.05 E-value=1.2e+02 Score=22.66 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=30.4
Q ss_pred HHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcc
Q psy14017 62 VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGP 95 (115)
Q Consensus 62 ii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~ 95 (115)
-+.+..|+-+++++-++.+.||..+.+.++.+..
T Consensus 4 ~l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~ 37 (187)
T PF12830_consen 4 ALVQRYLKNILELCLSSDDSVRLAALQVLELILR 37 (187)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 3678999999999999999999999999988754
No 156
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=21.00 E-value=2.3e+02 Score=24.59 Aligned_cols=65 Identities=17% Similarity=0.291 Sum_probs=49.6
Q ss_pred cccchhHHHHHHHHHHHHHHHhhhChhHHh-HhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc
Q psy14017 35 DESIESAEIRRIPQKYSSQIAEACGPTVTA-NFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET 99 (115)
Q Consensus 35 ~~~~~s~~VR~t~l~aI~~La~~l~~eii~-~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~ 99 (115)
..+-+....|...=.++..|+...+.-... -.++-.+-+-+.++.++||.++-.+|..++.....
T Consensus 382 ~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~ 447 (501)
T PF13001_consen 382 SNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKD 447 (501)
T ss_pred CCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhc
Confidence 456677899999999999999887754422 33444444555999999999999999999887754
No 157
>TIGR00051 acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon.
Probab=20.82 E-value=92 Score=20.06 Aligned_cols=20 Identities=25% Similarity=0.552 Sum_probs=17.1
Q ss_pred CCCCCCeeeeeeeeeecCCc
Q psy14017 5 RPRYGDYLRVGISVRDLGGL 24 (115)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~ 24 (115)
-|+|||-+.|...+.+.|+-
T Consensus 61 ~~~~gd~v~v~~~~~~~~~~ 80 (117)
T TIGR00051 61 PARLDDVLEIRTQIEELNGF 80 (117)
T ss_pred cccCCCEEEEEEEEEecCcE
Confidence 47899999999999998763
No 158
>KOG1943|consensus
Probab=20.79 E-value=1.9e+02 Score=28.38 Aligned_cols=43 Identities=21% Similarity=0.348 Sum_probs=37.2
Q ss_pred HHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhh
Q psy14017 62 VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQS 104 (115)
Q Consensus 62 ii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s 104 (115)
.+.+.++-.++..++|..--||-.+||.+..++..+......+
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~ 379 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQ 379 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHH
Confidence 5678899999999999999999999999999999987554333
No 159
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=20.16 E-value=67 Score=24.20 Aligned_cols=22 Identities=23% Similarity=0.117 Sum_probs=18.3
Q ss_pred CCcchhHHHHHHHHHhcccccc
Q psy14017 78 NVANVRFNVAKTLQKIGPILET 99 (115)
Q Consensus 78 ~VPNVRfNVAK~L~~Ia~~l~~ 99 (115)
++||||-+|....++.+++..+
T Consensus 42 p~pnVrSsvl~kv~ew~ehh~~ 63 (158)
T COG5201 42 PAPNVRSSVLMKVQEWMEHHTS 63 (158)
T ss_pred cccchhHHHHHHHHHHHHhccc
Confidence 7899999999888888776644
No 160
>PF14888 PBP-Tp47_c: Penicillin-binding protein Tp47 domain C; PDB: 1O75_B.
Probab=20.08 E-value=11 Score=28.67 Aligned_cols=18 Identities=44% Similarity=1.043 Sum_probs=12.9
Q ss_pred CCCCeeeeeeeeeecCCcc
Q psy14017 7 RYGDYLRVGISVRDLGGLG 25 (115)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~ 25 (115)
.||.+|||-++ +|.|+||
T Consensus 51 sygeflRvDl~-g~yg~lg 68 (161)
T PF14888_consen 51 SYGEFLRVDLN-GNYGDLG 68 (161)
T ss_dssp EEEEEEETT---HHHHHHH
T ss_pred ceeeEEEEEcc-CchHHHh
Confidence 48999999988 7777766
Done!