Query psy14017
Match_columns 115
No_of_seqs 102 out of 300
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 17:24:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14017.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14017hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b3u_A Protein (protein phosph 98.8 2E-08 6.8E-13 80.2 7.8 76 39-114 492-567 (588)
2 1b3u_A Protein (protein phosph 98.0 7E-06 2.4E-10 65.4 6.3 75 39-113 176-250 (588)
3 1ibr_B P95, importin beta-1 su 97.7 4E-05 1.4E-09 59.2 5.3 75 39-113 378-456 (462)
4 2qk2_A LP04448P; mini spindles 97.1 0.0013 4.6E-08 48.1 7.0 60 39-98 69-130 (242)
5 2qk2_A LP04448P; mini spindles 97.0 0.0014 4.7E-08 48.0 6.1 63 40-102 146-212 (242)
6 2bpt_A Importin beta-1 subunit 96.8 0.0024 8.3E-08 53.2 6.8 59 39-98 423-485 (861)
7 1ibr_B P95, importin beta-1 su 96.8 0.0031 1.1E-07 48.5 6.9 74 39-113 340-416 (462)
8 2qk1_A Protein STU2; STU2P, XM 96.8 0.0036 1.2E-07 47.3 6.9 70 40-113 159-234 (249)
9 4fdd_A Transportin-1; heat rep 96.7 0.0017 5.8E-08 55.5 5.4 61 39-99 371-433 (852)
10 4fdd_A Transportin-1; heat rep 96.6 0.0038 1.3E-07 53.3 6.5 62 39-100 412-476 (852)
11 1te4_A Conserved protein MTH18 96.5 0.0028 9.5E-08 42.5 4.1 49 39-95 54-102 (131)
12 1qgr_A Protein (importin beta 96.5 0.0065 2.2E-07 50.7 7.1 73 39-112 340-415 (876)
13 3ltm_A Alpha-REP4; protein eng 96.4 0.0079 2.7E-07 42.5 6.4 45 41-93 95-139 (211)
14 1qgr_A Protein (importin beta 96.4 0.0057 1.9E-07 51.1 6.1 61 39-99 378-441 (876)
15 2vgl_B AP-2 complex subunit be 96.1 0.0084 2.9E-07 49.9 6.0 53 39-95 98-150 (591)
16 3ltj_A Alpharep-4; protein eng 96.1 0.017 5.6E-07 40.5 6.6 46 41-94 90-135 (201)
17 3ltm_A Alpha-REP4; protein eng 96.0 0.019 6.6E-07 40.4 6.7 47 40-94 63-109 (211)
18 1u6g_C TIP120 protein, CAND1; 96.0 0.0087 3E-07 53.1 5.7 73 40-112 582-696 (1230)
19 4db6_A Armadillo repeat protei 96.0 0.029 9.9E-07 39.1 7.3 74 40-113 25-104 (210)
20 3ltj_A Alpharep-4; protein eng 96.0 0.023 7.7E-07 39.7 6.7 46 41-94 59-104 (201)
21 4db6_A Armadillo repeat protei 95.9 0.03 1E-06 39.1 6.9 74 40-113 67-146 (210)
22 1u6g_C TIP120 protein, CAND1; 95.8 0.023 7.9E-07 50.4 7.7 74 39-113 60-141 (1230)
23 1oyz_A Hypothetical protein YI 95.8 0.022 7.6E-07 41.8 6.5 55 39-95 103-157 (280)
24 4hxt_A De novo protein OR329; 95.8 0.038 1.3E-06 38.9 7.4 75 39-113 98-178 (252)
25 4ffb_C Protein STU2; tubulin f 95.7 0.0086 2.9E-07 45.0 4.0 74 39-112 151-235 (278)
26 1te4_A Conserved protein MTH18 95.7 0.0091 3.1E-07 39.9 3.7 47 39-93 85-131 (131)
27 4hxt_A De novo protein OR329; 95.7 0.044 1.5E-06 38.6 7.4 74 40-113 57-136 (252)
28 2bpt_A Importin beta-1 subunit 95.7 0.035 1.2E-06 46.3 7.7 59 39-98 343-401 (861)
29 2qk1_A Protein STU2; STU2P, XM 95.6 0.027 9.3E-07 42.4 6.4 60 39-98 73-136 (249)
30 1wa5_C Importin alpha RE-expor 95.6 0.039 1.3E-06 48.1 7.9 73 40-113 471-553 (960)
31 1oyz_A Hypothetical protein YI 95.5 0.029 1E-06 41.1 6.1 48 41-94 173-220 (280)
32 2jdq_A Importin alpha-1 subuni 95.5 0.034 1.2E-06 42.7 6.6 74 40-113 78-157 (450)
33 2vgl_B AP-2 complex subunit be 95.4 0.024 8.2E-07 47.1 6.0 58 39-97 133-191 (591)
34 4db8_A Armadillo-repeat protei 95.3 0.039 1.3E-06 39.4 6.0 75 39-113 108-188 (252)
35 4db8_A Armadillo-repeat protei 95.1 0.082 2.8E-06 37.7 7.1 73 41-113 68-146 (252)
36 2jdq_A Importin alpha-1 subuni 95.0 0.028 9.6E-07 43.2 4.6 74 40-113 289-369 (450)
37 1jdh_A Beta-catenin; beta-cate 94.8 0.045 1.5E-06 43.1 5.6 74 40-113 432-509 (529)
38 1w63_A Adapter-related protein 94.0 0.035 1.2E-06 46.6 3.4 53 39-95 119-171 (618)
39 1wa5_B Importin alpha subunit; 93.9 0.15 5.3E-06 40.9 7.0 60 39-98 395-460 (530)
40 1jdh_A Beta-catenin; beta-cate 93.4 0.16 5.4E-06 39.9 6.1 57 40-96 240-296 (529)
41 4b8j_A Importin subunit alpha- 93.3 0.21 7.1E-06 39.9 6.8 74 40-113 87-168 (528)
42 1wa5_B Importin alpha subunit; 92.8 0.27 9.4E-06 39.4 6.7 74 40-113 312-391 (530)
43 4b8j_A Importin subunit alpha- 92.6 0.32 1.1E-05 38.8 6.8 75 39-113 215-294 (528)
44 1w63_A Adapter-related protein 92.3 0.13 4.4E-06 43.2 4.4 56 39-96 154-209 (618)
45 4ady_A RPN2, 26S proteasome re 91.9 0.21 7.3E-06 45.5 5.6 70 39-113 624-693 (963)
46 1xqr_A HSPBP1 protein; armadil 91.6 0.44 1.5E-05 36.9 6.4 89 20-113 79-175 (296)
47 2vgl_A Adaptor protein complex 91.4 0.18 6.2E-06 42.7 4.3 53 39-95 123-177 (621)
48 3ul1_B Importin subunit alpha- 90.9 0.84 2.9E-05 37.0 7.7 93 21-113 184-282 (510)
49 2x19_B Importin-13; nuclear tr 90.8 0.51 1.7E-05 40.5 6.5 58 40-99 502-560 (963)
50 2z6h_A Catenin beta-1, beta-ca 90.7 0.46 1.6E-05 39.4 6.0 57 40-96 237-293 (644)
51 1xqr_A HSPBP1 protein; armadil 90.4 0.55 1.9E-05 36.4 5.9 76 38-113 51-132 (296)
52 2z6g_A B-catenin; FULL-length, 90.1 0.55 1.9E-05 40.5 6.2 57 40-96 373-429 (780)
53 2vgl_A Adaptor protein complex 89.6 0.37 1.3E-05 40.7 4.7 58 38-96 159-217 (621)
54 2z6h_A Catenin beta-1, beta-ca 89.4 0.77 2.6E-05 38.0 6.4 74 40-113 70-148 (644)
55 3tpo_A Importin subunit alpha- 89.3 1.3 4.5E-05 35.8 7.6 94 20-113 202-301 (529)
56 2of3_A ZYG-9; multifunctional 88.8 0.74 2.5E-05 35.9 5.6 60 39-100 179-241 (266)
57 3ul1_B Importin subunit alpha- 88.8 1.2 3.9E-05 36.2 6.9 57 40-96 114-173 (510)
58 3l9t_A Putative uncharacterize 88.1 0.55 1.9E-05 36.5 4.4 68 42-113 119-186 (240)
59 3m1i_C Exportin-1; heat repeat 87.6 0.85 2.9E-05 40.2 5.8 61 39-99 512-573 (1049)
60 2z6g_A B-catenin; FULL-length, 87.5 1.3 4.6E-05 38.1 6.8 74 40-113 206-284 (780)
61 1xm9_A Plakophilin 1; armadill 86.5 1.1 3.8E-05 35.9 5.5 73 41-113 16-94 (457)
62 4gmo_A Putative uncharacterize 86.4 0.89 3.1E-05 38.7 5.1 74 40-113 47-127 (684)
63 3tpo_A Importin subunit alpha- 85.9 2 6.7E-05 34.8 6.7 57 40-96 390-450 (529)
64 3nmw_A APC variant protein; AR 85.8 1.9 6.6E-05 34.0 6.5 75 38-112 95-177 (354)
65 2x1g_F Cadmus; transport prote 85.3 1.3 4.6E-05 38.1 5.7 56 40-98 519-575 (971)
66 1xm9_A Plakophilin 1; armadill 84.3 2.6 9E-05 33.7 6.7 90 18-113 40-135 (457)
67 3tt9_A Plakophilin-2; cell adh 83.2 4.4 0.00015 30.5 7.2 72 42-113 25-102 (233)
68 2x1g_F Cadmus; transport prote 81.3 1.8 6.1E-05 37.4 4.8 60 40-99 477-539 (971)
69 2iw3_A Elongation factor 3A; a 80.8 6.7 0.00023 35.8 8.6 69 41-111 148-219 (986)
70 3nmw_A APC variant protein; AR 80.1 3.5 0.00012 32.5 5.9 61 40-100 276-339 (354)
71 3tjz_B Coatomer subunit gamma; 79.9 3.3 0.00011 33.3 5.7 53 39-95 116-168 (355)
72 3nmz_A APC variant protein; pr 78.6 5.9 0.0002 32.6 7.0 75 39-113 212-294 (458)
73 3l6x_A Catenin delta-1; cateni 77.6 5.7 0.0002 33.9 6.8 74 40-113 61-141 (584)
74 1lrv_A LRV, leucine-rich repea 76.7 1.1 3.9E-05 34.0 2.0 20 70-89 174-193 (244)
75 1wa5_C Importin alpha RE-expor 74.2 11 0.00037 32.8 7.7 56 41-97 99-154 (960)
76 4hat_C Exportin-1; heat repeat 73.5 1.9 6.5E-05 38.9 2.9 73 39-113 465-545 (1023)
77 3ibv_A Exportin-T; karyopherin 73.4 5.2 0.00018 35.8 5.6 75 38-113 506-583 (980)
78 3l6x_A Catenin delta-1; cateni 71.0 12 0.0004 32.0 7.1 74 40-113 322-403 (584)
79 3tjz_B Coatomer subunit gamma; 70.1 6.4 0.00022 31.6 5.0 56 39-96 151-206 (355)
80 2x19_B Importin-13; nuclear tr 70.0 2.8 9.5E-05 35.9 3.0 60 39-99 461-522 (963)
81 3now_A UNC-45 protein, SD10334 69.7 7.7 0.00026 34.5 5.8 60 39-98 507-568 (810)
82 3gs3_A Symplekin, LD45768P; he 69.0 20 0.00069 27.4 7.5 69 42-113 30-98 (257)
83 3now_A UNC-45 protein, SD10334 68.0 10 0.00035 33.7 6.3 74 40-113 678-758 (810)
84 2iw3_A Elongation factor 3A; a 66.4 11 0.00037 34.4 6.2 67 45-112 70-140 (986)
85 4hat_C Exportin-1; heat repeat 65.1 9.1 0.00031 34.5 5.4 62 39-100 512-574 (1023)
86 3b2a_A TON_1937, putative unch 62.9 22 0.00076 28.0 6.6 60 40-99 46-108 (265)
87 3nmz_A APC variant protein; pr 60.6 18 0.00062 29.6 6.1 57 40-96 392-451 (458)
88 3m1i_C Exportin-1; heat repeat 60.5 7.1 0.00024 34.4 3.8 60 40-99 466-533 (1049)
89 2of3_A ZYG-9; multifunctional 60.4 28 0.00095 26.8 6.8 58 39-100 144-201 (266)
90 1vdy_A Hypothetical protein (R 58.0 24 0.00081 25.0 5.6 49 49-97 30-80 (140)
91 3l9t_A Putative uncharacterize 56.6 8.4 0.00029 29.8 3.2 59 39-97 151-209 (240)
92 1lrv_A LRV, leucine-rich repea 52.4 3.6 0.00012 31.2 0.5 38 39-91 182-219 (244)
93 3gs3_A Symplekin, LD45768P; he 52.1 29 0.001 26.5 5.6 55 39-95 65-119 (257)
94 3ibv_A Exportin-T; karyopherin 51.7 20 0.0007 32.0 5.3 70 40-111 456-538 (980)
95 1x5b_A Signal transducing adap 50.0 48 0.0016 23.4 6.2 61 39-99 64-129 (163)
96 3opb_A SWI5-dependent HO expre 47.6 55 0.0019 29.1 7.3 60 39-98 469-533 (778)
97 4ffb_C Protein STU2; tubulin f 47.4 34 0.0012 25.0 5.2 58 40-100 116-173 (278)
98 2db0_A 253AA long hypothetical 45.8 55 0.0019 25.4 6.2 61 31-98 153-213 (253)
99 4ady_A RPN2, 26S proteasome re 43.8 30 0.001 31.6 5.1 32 66-97 612-643 (963)
100 3b2a_A TON_1937, putative unch 43.2 28 0.00095 27.4 4.2 52 63-114 30-84 (265)
101 3o2t_A Symplekin; heat repeat, 41.2 96 0.0033 25.2 7.4 68 43-113 41-108 (386)
102 3o2t_A Symplekin; heat repeat, 40.7 58 0.002 26.5 6.0 53 40-94 76-128 (386)
103 3oc3_A Helicase MOT1, MOT1; re 40.5 47 0.0016 29.7 5.7 50 42-94 278-327 (800)
104 4gmo_A Putative uncharacterize 40.2 38 0.0013 28.6 5.0 32 63-95 32-63 (684)
105 3g2s_A C-terminal fragment of 38.4 66 0.0023 22.5 5.3 60 40-99 61-130 (149)
106 3ldz_A STAM-1, signal transduc 38.4 67 0.0023 22.0 5.3 60 40-99 55-118 (140)
107 3tt9_A Plakophilin-2; cell adh 36.8 84 0.0029 23.3 6.0 74 18-96 48-125 (233)
108 3gjx_A Exportin-1; transport, 36.4 23 0.00079 32.4 3.2 73 39-113 491-571 (1073)
109 1mhq_A ADP-ribosylation factor 34.2 98 0.0033 21.4 5.6 60 40-99 51-120 (148)
110 2db0_A 253AA long hypothetical 34.1 69 0.0024 24.8 5.1 51 45-97 88-138 (253)
111 3u0r_A Apoptosis inhibitor 5; 31.4 95 0.0033 26.5 6.0 56 39-96 40-95 (507)
112 2fv2_A RCD1 required for cell 31.0 57 0.0019 25.6 4.3 43 34-76 109-155 (268)
113 1ho8_A Vacuolar ATP synthase s 28.4 36 0.0012 28.7 2.9 29 66-94 447-475 (480)
114 2bdq_A Copper homeostasis prot 27.8 18 0.00061 27.6 0.8 45 2-47 59-113 (224)
115 3zyq_A Hepatocyte growth facto 27.6 1.3E+02 0.0045 22.0 5.7 61 39-99 57-122 (226)
116 1dvp_A HRS, hepatocyte growth 27.2 68 0.0023 23.3 4.0 61 39-99 54-119 (220)
117 3opb_A SWI5-dependent HO expre 26.6 78 0.0027 28.2 4.8 57 39-95 666-728 (778)
118 1juq_A ADP-ribosylation factor 26.3 1.1E+02 0.0036 21.8 4.8 60 40-99 63-132 (171)
119 3a6p_A Exportin-5; exportin-5, 25.8 97 0.0033 28.1 5.4 61 39-99 544-617 (1204)
120 1twd_A Copper homeostasis prot 23.2 24 0.00083 27.4 0.8 45 2-47 56-110 (256)
121 3k49_A MRNA-binding protein PU 20.6 58 0.002 25.2 2.6 42 70-114 303-344 (369)
No 1
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.75 E-value=2e-08 Score=80.19 Aligned_cols=76 Identities=53% Similarity=0.782 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHhhh
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLN 114 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~kL~ 114 (115)
.+..+|.+.+.++..++..++.+...+.++|.++++++|+.||||.+++++|..+...++.+...+.+.|.|.+|.
T Consensus 492 ~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~ 567 (588)
T 1b3u_A 492 PNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLT 567 (588)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHc
Confidence 4578999999999999999999999999999999999999999999999999999999988877788999998864
No 2
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.04 E-value=7e-06 Score=65.42 Aligned_cols=75 Identities=19% Similarity=0.291 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHhh
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~kL 113 (115)
+++.||.+++.++..++..++.+...+.++|.+..+++|+.++||..++++|..+++.++.....+.+.|.+.++
T Consensus 176 ~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ 250 (588)
T 1b3u_A 176 DTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQA 250 (588)
T ss_dssp SCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 367889999999999988888888888889998888888888999888888888888776655666777777665
No 3
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.72 E-value=4e-05 Score=59.24 Aligned_cols=75 Identities=21% Similarity=0.175 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhH---HhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchh-hhhcHHHHHHhh
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTV---TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNV-IQSQVKPALDKL 113 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~ei---i~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~-v~s~IkP~L~kL 113 (115)
++..+|.++++++..++..+..+. ....++|.++++++|+.|+||..++.++..++..++... ..+.+.|.+..|
T Consensus 378 ~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~L 456 (462)
T 1ibr_B 378 PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCL 456 (462)
T ss_dssp SSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHH
Confidence 357899999999999998766432 347899999999999999999999999999999887643 234555555443
No 4
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.12 E-value=0.0013 Score=48.06 Aligned_cols=60 Identities=13% Similarity=0.131 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhChh--HHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccccc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPT--VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE 98 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~e--ii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~ 98 (115)
.+..||...+.++..|+..++.+ ...+.++|.++..++|+.+.||-.+..+|..+.+...
T Consensus 69 ~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~ 130 (242)
T 2qk2_A 69 SNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS 130 (242)
T ss_dssp SCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC
Confidence 46789999999999999988875 3457789999999999999999999999998887654
No 5
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.01 E-value=0.0014 Score=48.00 Aligned_cols=63 Identities=11% Similarity=0.197 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHHHhhhChh----HHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhh
Q psy14017 40 SAEIRRIPQKYSSQIAEACGPT----VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVI 102 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~~e----ii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v 102 (115)
++.+|..++..+..+....+++ .....++|.+..+++|+.++||-.+.+++..++..++.+.+
T Consensus 146 ~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~ 212 (242)
T 2qk2_A 146 NPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAV 212 (242)
T ss_dssp CHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHH
Confidence 6899999999999987665543 24468999999999999999999999999999999886543
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=96.82 E-value=0.0024 Score=53.22 Aligned_cols=59 Identities=15% Similarity=0.129 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhChh----HHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccccc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPT----VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE 98 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~e----ii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~ 98 (115)
+++.||.+++.++..++..++.+ ...+.++|.+++.++|+ |+||.++++++..+++.++
T Consensus 423 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~ 485 (861)
T 2bpt_A 423 QSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLA 485 (861)
T ss_dssp SCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcc
Confidence 36899999999999999998753 46789999999999998 9999999999999987765
No 7
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=96.82 E-value=0.0031 Score=48.51 Aligned_cols=74 Identities=15% Similarity=0.060 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhh---hhcHHHHHHhh
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVI---QSQVKPALDKL 113 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v---~s~IkP~L~kL 113 (115)
.+..+|.+.+.++..++..++ +.+...++|.+..+++|+.+++|..+..++..++...+.+.+ -.++.|.|.++
T Consensus 340 ~~~~~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~ 416 (462)
T 1ibr_B 340 DDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIEL 416 (462)
T ss_dssp TCCSHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHG
T ss_pred ccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999 567789999999999999999999999999999976553221 25567766553
No 8
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.0036 Score=47.26 Aligned_cols=70 Identities=14% Similarity=0.165 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHHHHHhhhCh--hH---Hh-HhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHhh
Q psy14017 40 SAEIRRIPQKYSSQIAEACGP--TV---TA-NFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~~--ei---i~-~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~kL 113 (115)
++++|+.++.+|..++...+. +. .. +.++|.+.+++.|+.+.||=...+++..++..++... +.|.+.+|
T Consensus 159 ~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~----~~p~l~~L 234 (249)
T 2qk1_A 159 TPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNT----FVKTLEHL 234 (249)
T ss_dssp SHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGG----GHHHHHHS
T ss_pred ChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHH----HHHHHHHH
Confidence 689999999999999988774 32 34 8899999999999999999999999999999998754 44444443
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=96.74 E-value=0.0017 Score=55.46 Aligned_cols=61 Identities=20% Similarity=0.147 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhChh--HHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPT--VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET 99 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~e--ii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~ 99 (115)
++..+|.+.+.++..+++.++.. .....++|.++++++|+.|.||-.++.++..+++.+..
T Consensus 371 ~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 433 (852)
T 4fdd_A 371 HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVS 433 (852)
T ss_dssp SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 36899999999999999877643 24578999999999999999999999999999987654
No 10
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=96.60 E-value=0.0038 Score=53.29 Aligned_cols=62 Identities=16% Similarity=0.043 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhCh---hHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGP---TVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN 100 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~---eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~ 100 (115)
+++.||.+++.++..++..++. +.....++|.+++.++|+.|.||-+++.++..+++..+..
T Consensus 412 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~ 476 (852)
T 4fdd_A 412 KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE 476 (852)
T ss_dssp SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh
Confidence 4689999999999999998764 3456789999999999999999999999999998777653
No 11
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.48 E-value=0.0028 Score=42.54 Aligned_cols=49 Identities=20% Similarity=0.291 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGP 95 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~ 95 (115)
+++.||...+.++..+.. +..+|.++++++|+.|.||..++.+|..+..
T Consensus 54 ~~~~vR~~A~~aL~~~~~--------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~ 102 (131)
T 1te4_A 54 EDWRIRGAAAWIIGNFQD--------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG 102 (131)
T ss_dssp SCHHHHHHHHHHHGGGCS--------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHhcCC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 457899998888776652 3458888999999999999999999999873
No 12
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=96.48 E-value=0.0065 Score=50.74 Aligned_cols=73 Identities=14% Similarity=0.039 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhh---hhcHHHHHHh
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVI---QSQVKPALDK 112 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v---~s~IkP~L~k 112 (115)
.+..+|.+.+.++..++..++. .+...++|.+...++|+.+++|..++.++..++.....+.+ -.++.|.+.+
T Consensus 340 ~~~~~r~~a~~~l~~l~~~~~~-~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~ 415 (876)
T 1qgr_A 340 DDWNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIE 415 (876)
T ss_dssp TCCCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHCcH-hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999985 56779999999999999999999999999999987763322 2345555543
No 13
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.43 E-value=0.0079 Score=42.45 Aligned_cols=45 Identities=20% Similarity=0.159 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHh
Q psy14017 41 AEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKI 93 (115)
Q Consensus 41 ~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~I 93 (115)
+.||...+.++..+.. ...+|.+.++++|+.|.||..++.+|..+
T Consensus 95 ~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 95 GWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEI 139 (211)
T ss_dssp HHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 4455555555444432 12344444444444444444444444444
No 14
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=96.37 E-value=0.0057 Score=51.10 Aligned_cols=61 Identities=21% Similarity=0.165 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhH---HhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTV---TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET 99 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~ei---i~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~ 99 (115)
.+..+|.+.+.++..++..++++. ....++|.++++++|+.|.||-.++.++..++..+..
T Consensus 378 ~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 441 (876)
T 1qgr_A 378 PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (876)
T ss_dssp SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred CChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCch
Confidence 357899999999999998887443 3467999999999999999999999999999987754
No 15
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=96.15 E-value=0.0084 Score=49.86 Aligned_cols=53 Identities=17% Similarity=0.127 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGP 95 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~ 95 (115)
+++.+|...+.++..+ .. ..+.+.++|.+.++++|+.|.||..++.++..+..
T Consensus 98 ~n~~ir~~AL~~L~~i---~~-~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~ 150 (591)
T 2vgl_B 98 PNPLIRALAVRTMGCI---RV-DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHD 150 (591)
T ss_dssp SSHHHHHHHHHHHHTC---CS-GGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC---Ch-HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHh
Confidence 4567775554444333 23 33556677777777777777777777777777765
No 16
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=96.11 E-value=0.017 Score=40.45 Aligned_cols=46 Identities=22% Similarity=0.203 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhc
Q psy14017 41 AEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIG 94 (115)
Q Consensus 41 ~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia 94 (115)
+.||...+.++..+.. ...+|.+.++++|+.|.||..++.+|..+.
T Consensus 90 ~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 90 GWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIG 135 (201)
T ss_dssp HHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 4455555555444322 124444444455555555555555554443
No 17
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.04 E-value=0.019 Score=40.42 Aligned_cols=47 Identities=26% Similarity=0.283 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhc
Q psy14017 40 SAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIG 94 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia 94 (115)
++.||...+.++..+.. ...+|.+.++++|+.|.||..++.+|..+.
T Consensus 63 ~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~ 109 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGD--------ERAVEPLIKALKDEDGWVRQSAAVALGQIG 109 (211)
T ss_dssp CHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhhCC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 34555555555544431 234455555555555555555555555554
No 18
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=96.01 E-value=0.0087 Score=53.08 Aligned_cols=73 Identities=12% Similarity=0.153 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHHHHhhhChh------------------------------------------HHhHhHHHHHhhhcCC
Q psy14017 40 SAEIRRIPQKYSSQIAEACGPT------------------------------------------VTANFLLPTVLNMAGD 77 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~~e------------------------------------------ii~~~ILPivl~L~kD 77 (115)
++.+|.++++|+..++...|.+ .+.+.++|.+.+.++|
T Consensus 582 ~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~ 661 (1230)
T 1u6g_C 582 DQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRK 661 (1230)
T ss_dssp CHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHh
Confidence 4578888888888888776543 2336677777778888
Q ss_pred CCcchhHHHHHHHHHhcccccchhhhhcHHHHHHh
Q psy14017 78 NVANVRFNVAKTLQKIGPILETNVIQSQVKPALDK 112 (115)
Q Consensus 78 ~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~k 112 (115)
+.+++|.|+++++..++...+.....+.+.|.+..
T Consensus 662 ~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ 696 (1230)
T 1u6g_C 662 NQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDE 696 (1230)
T ss_dssp CCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHH
Confidence 89999999999999998877654444566666644
No 19
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=95.96 E-value=0.029 Score=39.11 Aligned_cols=74 Identities=20% Similarity=0.144 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHHHHHhh---hChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc---hhhhhcHHHHHHhh
Q psy14017 40 SAEIRRIPQKYSSQIAEA---CGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET---NVIQSQVKPALDKL 113 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~---l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~---~~v~s~IkP~L~kL 113 (115)
++.+|...+.++..++.. .-...+....+|.++++++++.++||-.++.+|..++..-+. ..++....|.|.++
T Consensus 25 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 104 (210)
T 4db6_A 25 DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 104 (210)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHH
Confidence 468999999999999842 223345567899999999999999999999999999843221 23444556666554
No 20
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=95.96 E-value=0.023 Score=39.74 Aligned_cols=46 Identities=26% Similarity=0.286 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhc
Q psy14017 41 AEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIG 94 (115)
Q Consensus 41 ~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia 94 (115)
+.+|...+.++..+.. ...+|.+.++++|+.|.||..++++|..+.
T Consensus 59 ~~vr~~a~~~L~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 104 (201)
T 3ltj_A 59 AWVRRAAADALGQIGD--------ERAVEPLIKALKDEDGWVRQSAAVALGQIG 104 (201)
T ss_dssp HHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhCC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 4555555555444321 134455555555555555555555555544
No 21
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=95.86 E-value=0.03 Score=39.06 Aligned_cols=74 Identities=20% Similarity=0.136 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHHHHhh---hChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc---hhhhhcHHHHHHhh
Q psy14017 40 SAEIRRIPQKYSSQIAEA---CGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET---NVIQSQVKPALDKL 113 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~---l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~---~~v~s~IkP~L~kL 113 (115)
++.+|..++.++..++.. .-...+....+|.++++++++.+++|.+++.+|..++..-.. ..++....|.|.++
T Consensus 67 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 146 (210)
T 4db6_A 67 NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 146 (210)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHH
Confidence 578999999999988742 223345567899999999999999999999999999864322 13345566766654
No 22
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=95.84 E-value=0.023 Score=50.37 Aligned_cols=74 Identities=9% Similarity=0.080 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch--------hhhhcHHHHH
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN--------VIQSQVKPAL 110 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~--------~v~s~IkP~L 110 (115)
.++.+|.+.+.++..++..++. ...+.++|.++..+.|+.++||-.+++++..++..++.. ...+++.|.|
T Consensus 60 ~~~~vR~~A~~~L~~l~~~~~~-~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L 138 (1230)
T 1u6g_C 60 KNGEVQNLAVKCLGPLVSKVKE-YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRL 138 (1230)
T ss_dssp SSHHHHHHHHHHHHHHHTTSCH-HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHH
Confidence 4689999999999999998876 466889999999999999999999999999999887754 1346777777
Q ss_pred Hhh
Q psy14017 111 DKL 113 (115)
Q Consensus 111 ~kL 113 (115)
.+.
T Consensus 139 ~~~ 141 (1230)
T 1u6g_C 139 TSA 141 (1230)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 23
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=95.84 E-value=0.022 Score=41.81 Aligned_cols=55 Identities=20% Similarity=0.120 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGP 95 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~ 95 (115)
+++.||..++.++..++...+ .....++|.+.++++|+.|.||..++.+|..+..
T Consensus 103 ~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 103 KSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp SCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence 457899999999888874322 1245678888888888888888888888887653
No 24
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=95.80 E-value=0.038 Score=38.95 Aligned_cols=75 Identities=13% Similarity=0.161 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHHHHHHHhh---hChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc---hhhhhcHHHHHHh
Q psy14017 39 ESAEIRRIPQKYSSQIAEA---CGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET---NVIQSQVKPALDK 112 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~---l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~---~~v~s~IkP~L~k 112 (115)
+++.+|..++.++..++.. .-........+|.++++++|+.+++|.+++.+|..++..-+. ..++..+.|.|.+
T Consensus 98 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 177 (252)
T 4hxt_A 98 TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVK 177 (252)
T ss_dssp SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHH
Confidence 3578999999999999842 223344557899999999999999999999999999864332 2344556677665
Q ss_pred h
Q psy14017 113 L 113 (115)
Q Consensus 113 L 113 (115)
+
T Consensus 178 l 178 (252)
T 4hxt_A 178 L 178 (252)
T ss_dssp H
T ss_pred H
Confidence 4
No 25
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.75 E-value=0.0086 Score=44.98 Aligned_cols=74 Identities=22% Similarity=0.210 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHH-----hHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchh------hhhcHH
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVT-----ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNV------IQSQVK 107 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii-----~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~------v~s~Ik 107 (115)
-+|.+|..++..+..+-...|...+ .+.+++.+.+++.|+.|+||=...+.+..+..+++... +-+.++
T Consensus 151 Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lk 230 (278)
T 4ffb_C 151 KLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLK 230 (278)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----------CTTSSC
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCC
Confidence 4789999999999998877765443 35567778889999999999999999999998887532 224566
Q ss_pred HHHHh
Q psy14017 108 PALDK 112 (115)
Q Consensus 108 P~L~k 112 (115)
|.+.+
T Consensus 231 p~~~k 235 (278)
T 4ffb_C 231 PIQVK 235 (278)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 26
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=95.73 E-value=0.0091 Score=39.94 Aligned_cols=47 Identities=15% Similarity=0.087 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHh
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKI 93 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~I 93 (115)
.++.||...+.++..+.. ...+|.+.++++|+.+.||..++.+|.+|
T Consensus 85 ~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 85 DSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp CCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred CCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 456899999999887762 45789999999999999999999988654
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=95.70 E-value=0.044 Score=38.59 Aligned_cols=74 Identities=14% Similarity=0.163 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHHHHhh---hChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc---hhhhhcHHHHHHhh
Q psy14017 40 SAEIRRIPQKYSSQIAEA---CGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET---NVIQSQVKPALDKL 113 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~---l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~---~~v~s~IkP~L~kL 113 (115)
++.+|..++.++..++.. .-...+....+|.++++++|+.+.+|.+++.+|..++..-+. ...+....|.|.++
T Consensus 57 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~ 136 (252)
T 4hxt_A 57 DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL 136 (252)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 378999999999999853 333445567899999999999999999999999999853221 13344556666554
No 28
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=95.67 E-value=0.035 Score=46.27 Aligned_cols=59 Identities=12% Similarity=0.018 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccccc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE 98 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~ 98 (115)
+...+|.+.+.++..++..++ +.+...++|.+..+++|+.+.+|-.++.++..++...+
T Consensus 343 ~~~~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~ 401 (861)
T 2bpt_A 343 DDWNVSMSAGACLQLFAQNCG-NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPD 401 (861)
T ss_dssp CCCHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC
T ss_pred ccCcHHHHHHHHHHHHHHHcc-HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCC
Confidence 345899999999999999998 55678999999999999999999999999999997665
No 29
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=95.63 E-value=0.027 Score=42.40 Aligned_cols=60 Identities=12% Similarity=0.181 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhC-hhH---HhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccccc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACG-PTV---TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE 98 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~-~ei---i~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~ 98 (115)
.+..||...++|+..|+..++ ++. -...++|.++..++|.-++||=.+..++..+.+.++
T Consensus 73 ~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~ 136 (249)
T 2qk1_A 73 ANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYD 136 (249)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcc
Confidence 467899999999999999998 553 346789999999999999999999999999988774
No 30
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=95.55 E-value=0.039 Score=48.12 Aligned_cols=73 Identities=21% Similarity=0.131 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccccc----------chhhhhcHHHH
Q psy14017 40 SAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE----------TNVIQSQVKPA 109 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~----------~~~v~s~IkP~ 109 (115)
++.+|.+++.++.+.++.+.++ ..+.++|.+++.+.|+.+-||..++.++..+.+..+ .+.+...+.+.
T Consensus 471 ~p~vr~~a~~~lg~~~~~~~~~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~l 549 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQLTKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEIL 549 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGSCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHH
T ss_pred CceehHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHH
Confidence 8899999999999999998765 578899999999999989999999999999987543 33455555555
Q ss_pred HHhh
Q psy14017 110 LDKL 113 (115)
Q Consensus 110 L~kL 113 (115)
+.+|
T Consensus 550 l~~L 553 (960)
T 1wa5_C 550 LKNL 553 (960)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 31
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=95.52 E-value=0.029 Score=41.15 Aligned_cols=48 Identities=13% Similarity=0.035 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhc
Q psy14017 41 AEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIG 94 (115)
Q Consensus 41 ~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia 94 (115)
+.||...+.++..+.. -....+|.+.++++|+.++||..++.+|..+.
T Consensus 173 ~~vr~~a~~aL~~~~~------~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 173 GDVRNWAAFAININKY------DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp HHHHHHHHHHHHHHTC------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhcc------CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 3455555555544421 12345566666666666666666666666554
No 32
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=95.50 E-value=0.034 Score=42.70 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHHHHhh---hChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccccc---chhhhhcHHHHHHhh
Q psy14017 40 SAEIRRIPQKYSSQIAEA---CGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE---TNVIQSQVKPALDKL 113 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~---l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~---~~~v~s~IkP~L~kL 113 (115)
++.+|...+.++..++.. .....+....+|.+.++++|+.|+||..++.+|..++.... ...++..+.|.|.++
T Consensus 78 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~ 157 (450)
T 2jdq_A 78 NCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQL 157 (450)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHH
Confidence 578999999999998852 22234457899999999999999999999999999986432 113344556666554
No 33
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=95.44 E-value=0.024 Score=47.11 Aligned_cols=58 Identities=14% Similarity=0.199 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHh-HhHHHHHhhhcCCCCcchhHHHHHHHHHhcccc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTA-NFLLPTVLNMAGDNVANVRFNVAKTLQKIGPIL 97 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~-~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l 97 (115)
.++.||.+.+.|+..+... +++.+. ..++|.+.++++|+.|.||.+++.+|..+++.-
T Consensus 133 ~~~~VRk~A~~al~~i~~~-~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~ 191 (591)
T 2vgl_B 133 EDPYVRKTAAVCVAKLHDI-NAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESH 191 (591)
T ss_dssp SCHHHHHHHHHHHHHHHHS-SCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSC
T ss_pred CChHHHHHHHHHHHHHHhh-ChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhC
Confidence 5789999999999999984 455544 378999999999999999999999999998753
No 34
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=95.32 E-value=0.039 Score=39.45 Aligned_cols=75 Identities=20% Similarity=0.160 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhC---hhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch---hhhhcHHHHHHh
Q psy14017 39 ESAEIRRIPQKYSSQIAEACG---PTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN---VIQSQVKPALDK 112 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~---~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~---~v~s~IkP~L~k 112 (115)
.++.+|..++.++..++..-. ........+|.++++++|+.++||.+++.+|..++..-+.. .++..+.|.|.+
T Consensus 108 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 187 (252)
T 4db8_A 108 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 187 (252)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHH
Confidence 357899999999999986533 22455679999999999999999999999999998643221 334556666665
Q ss_pred h
Q psy14017 113 L 113 (115)
Q Consensus 113 L 113 (115)
+
T Consensus 188 l 188 (252)
T 4db8_A 188 L 188 (252)
T ss_dssp G
T ss_pred H
Confidence 4
No 35
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=95.06 E-value=0.082 Score=37.69 Aligned_cols=73 Identities=21% Similarity=0.138 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHhh---hChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch---hhhhcHHHHHHhh
Q psy14017 41 AEIRRIPQKYSSQIAEA---CGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN---VIQSQVKPALDKL 113 (115)
Q Consensus 41 ~~VR~t~l~aI~~La~~---l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~---~v~s~IkP~L~kL 113 (115)
+.+|..++.++..++.. .-...+....+|.++++++++.+.||-+++.+|..++..-... .++....|.|.++
T Consensus 68 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 146 (252)
T 4db8_A 68 EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 146 (252)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHH
Confidence 78999999999988852 2233344569999999999999999999999999998654332 4455567777654
No 36
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=94.96 E-value=0.028 Score=43.19 Aligned_cols=74 Identities=14% Similarity=0.102 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHHHHhhhC---hhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch----hhhhcHHHHHHh
Q psy14017 40 SAEIRRIPQKYSSQIAEACG---PTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN----VIQSQVKPALDK 112 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~---~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~----~v~s~IkP~L~k 112 (115)
++.+|..++.++..++.... ...+...++|.++++++|+.++||.+++.++..++...... .++..+.|.|.+
T Consensus 289 ~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ 368 (450)
T 2jdq_A 289 KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCD 368 (450)
T ss_dssp SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHH
Confidence 57899999999999985211 22334689999999999999999999999999997542222 334556777766
Q ss_pred h
Q psy14017 113 L 113 (115)
Q Consensus 113 L 113 (115)
+
T Consensus 369 l 369 (450)
T 2jdq_A 369 L 369 (450)
T ss_dssp G
T ss_pred H
Confidence 4
No 37
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=94.81 E-value=0.045 Score=43.05 Aligned_cols=74 Identities=12% Similarity=0.057 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHHHHHhhhC--hhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccc--cchhhhhcHHHHHHhh
Q psy14017 40 SAEIRRIPQKYSSQIAEACG--PTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPIL--ETNVIQSQVKPALDKL 113 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~--~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l--~~~~v~s~IkP~L~kL 113 (115)
..+++..++.++..|+..-. ........+|.+.++++|+.+|||.+++++|..++..- .....+....+.|.+|
T Consensus 432 ~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l 509 (529)
T 1jdh_A 432 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTEL 509 (529)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHG
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHH
Confidence 45677778888888875422 22456778899999999999999999999999987431 1112344455666655
No 38
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=93.99 E-value=0.035 Score=46.62 Aligned_cols=53 Identities=8% Similarity=-0.038 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGP 95 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~ 95 (115)
.++.+|...+.++..++ + ..+.+.++|.+.++++|+.|.||-+++.++.++..
T Consensus 119 ~n~~vr~lAL~~L~~i~---~-~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~ 171 (618)
T 1w63_A 119 STQFVQGLALCTLGCMG---S-SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIR 171 (618)
T ss_dssp SSSHHHHHHHHHHHHHC---C-HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHhcC---C-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 45667766666555554 2 23556777777777777777777777777777654
No 39
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=93.92 E-value=0.15 Score=40.87 Aligned_cols=60 Identities=7% Similarity=-0.084 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhCh------hHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccccc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGP------TVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE 98 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~------eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~ 98 (115)
.++.+|..++.++..++...++ ..+...++|.+..+++++.|+||.+++.+|..+....+
T Consensus 395 ~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 395 AEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE 460 (530)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 3568999999999999876543 33456799999999999999999999999999876543
No 40
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=93.38 E-value=0.16 Score=39.90 Aligned_cols=57 Identities=18% Similarity=0.079 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccc
Q psy14017 40 SAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI 96 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~ 96 (115)
++.+|..++.++..++.........+.++|.+.++++++.++||.+++.+|..++..
T Consensus 240 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 296 (529)
T 1jdh_A 240 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296 (529)
T ss_dssp CHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred ChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 567888899999999877655556678999999999999999999999999999764
No 41
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=93.34 E-value=0.21 Score=39.91 Aligned_cols=74 Identities=15% Similarity=0.161 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHHHHhhhC----hhHHhHhHHHHHhhhcCCCC-cchhHHHHHHHHHhcccccc---hhhhhcHHHHHH
Q psy14017 40 SAEIRRIPQKYSSQIAEACG----PTVTANFLLPTVLNMAGDNV-ANVRFNVAKTLQKIGPILET---NVIQSQVKPALD 111 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~----~eii~~~ILPivl~L~kD~V-PNVRfNVAK~L~~Ia~~l~~---~~v~s~IkP~L~ 111 (115)
++.+|...+.++..++..-. ...+...++|.++++++++- |++|+.++.+|..++..-.. ..++....|.|.
T Consensus 87 ~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 166 (528)
T 4b8j_A 87 DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV 166 (528)
T ss_dssp CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHH
Confidence 46788888888888865433 34566789999999999886 99999999999999874221 134445666666
Q ss_pred hh
Q psy14017 112 KL 113 (115)
Q Consensus 112 kL 113 (115)
++
T Consensus 167 ~l 168 (528)
T 4b8j_A 167 KL 168 (528)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 42
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=92.80 E-value=0.27 Score=39.40 Aligned_cols=74 Identities=19% Similarity=0.188 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHHHHhh---hChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc---hhhhhcHHHHHHhh
Q psy14017 40 SAEIRRIPQKYSSQIAEA---CGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET---NVIQSQVKPALDKL 113 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~---l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~---~~v~s~IkP~L~kL 113 (115)
++.+|..++.++..++.. .....+...++|.++.+++++.+.||..++.+|..++..... ..++..+.|.|.++
T Consensus 312 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~l 391 (530)
T 1wa5_B 312 STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKL 391 (530)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 468899999999888743 223344568999999999999999999999999999863221 12344566666553
No 43
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=92.55 E-value=0.32 Score=38.79 Aligned_cols=75 Identities=17% Similarity=0.116 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHHHHHHHhhh--ChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch---hhhhcHHHHHHhh
Q psy14017 39 ESAEIRRIPQKYSSQIAEAC--GPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN---VIQSQVKPALDKL 113 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l--~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~---~v~s~IkP~L~kL 113 (115)
.++.+|..++.++..|+..- ........++|.+.++++++.++|+.+++.+|..++...+.. .++..+.|.|.++
T Consensus 215 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~l 294 (528)
T 4b8j_A 215 TKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 294 (528)
T ss_dssp CCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHH
Confidence 46789999999999998752 334456889999999999999999999999999998654321 2344556666554
No 44
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=92.35 E-value=0.13 Score=43.18 Aligned_cols=56 Identities=13% Similarity=0.215 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI 96 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~ 96 (115)
.++.||.+.+.|+..+... .++. .+.++|.+.+++.|+.|.|+.+++..|..+++.
T Consensus 154 ~~~~VRk~A~~al~~l~~~-~p~~-v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~ 209 (618)
T 1w63_A 154 SNSYLRKKAALCAVHVIRK-VPEL-MEMFLPATKNLLNEKNHGVLHTSVVLLTEMCER 209 (618)
T ss_dssp CCHHHHHHHHHHHHHHHHH-CGGG-GGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCS
T ss_pred CCHHHHHHHHHHHHHHHHH-ChHH-HHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHh
Confidence 5789999999999999975 4454 458999999999999999999999999999864
No 45
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.93 E-value=0.21 Score=45.51 Aligned_cols=70 Identities=16% Similarity=0.033 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHhh
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~kL 113 (115)
.++++|..++.|+..++.--+. ..++.++.++++|+++.||.+++.+|..++.--. +...+.+...+.+|
T Consensus 624 ~d~~VR~gAalALGli~aGn~~----~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtn-na~~~rva~~l~~L 693 (963)
T 4ady_A 624 HNAHVRCGTAFALGIACAGKGL----QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQT-EKLNPQVADINKNF 693 (963)
T ss_dssp SCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCC-TTTCTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCc-cccchHHHHHHHHH
Confidence 4589999999999888754333 5667788888999999999999999999975332 22223455555544
No 46
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=91.59 E-value=0.44 Score=36.92 Aligned_cols=89 Identities=15% Similarity=0.091 Sum_probs=61.1
Q ss_pred ecCCcccccc-cCCCccccchhHHHHHHHHHHHHHHHhh---hChhHHhHhHHHHHhhhcC-CCCcchhHHHHHHHHHhc
Q psy14017 20 DLGGLGRFGL-GLTSEDESIESAEIRRIPQKYSSQIAEA---CGPTVTANFLLPTVLNMAG-DNVANVRFNVAKTLQKIG 94 (115)
Q Consensus 20 ~~~~~~~~~~-~~~~~~~~~~s~~VR~t~l~aI~~La~~---l~~eii~~~ILPivl~L~k-D~VPNVRfNVAK~L~~Ia 94 (115)
..||+-.+=- -|.+ +++.+|...+.++..++.. +-..++....+|.++++++ |+.++||-+++.+|..++
T Consensus 79 ~~G~l~~Lv~~lL~s-----~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~ 153 (296)
T 1xqr_A 79 QLSGMHLLVGRYLEA-----GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLV 153 (296)
T ss_dssp HTTHHHHHHHTTTTC-----SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 3566554422 2333 4679999999999999853 3334555679999999998 568999999999999997
Q ss_pred ccccc---hhhhhcHHHHHHhh
Q psy14017 95 PILET---NVIQSQVKPALDKL 113 (115)
Q Consensus 95 ~~l~~---~~v~s~IkP~L~kL 113 (115)
..-.. ..++....|.|.++
T Consensus 154 ~~~~~~~~~~~~~ggi~~L~~l 175 (296)
T 1xqr_A 154 REQEAGLLQFLRLDGFSVLMRA 175 (296)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHH
T ss_pred cCCcHHHHHHHHCCCHHHHHHH
Confidence 53322 23344566666554
No 47
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=91.41 E-value=0.18 Score=42.65 Aligned_cols=53 Identities=11% Similarity=0.166 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhc--CCCCcchhHHHHHHHHHhcc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMA--GDNVANVRFNVAKTLQKIGP 95 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~--kD~VPNVRfNVAK~L~~Ia~ 95 (115)
+++.+|...+.++..+.. + .+.+.++|.+.+++ .|+.|.||-+++-++.++.+
T Consensus 123 ~n~~ir~lALr~L~~i~~---~-e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~ 177 (621)
T 2vgl_A 123 RNPTFMGLALHCIANVGS---R-EMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYR 177 (621)
T ss_dssp CCHHHHHHHHHHHHHHCC---H-HHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhccCC---H-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 456777666666655532 2 36677777777777 77888888777777777765
No 48
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=90.93 E-value=0.84 Score=36.97 Aligned_cols=93 Identities=19% Similarity=0.143 Sum_probs=60.4
Q ss_pred cCCcccccccCCCccccchhHHHHHHHHHHHHHHHhhh---ChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccc
Q psy14017 21 LGGLGRFGLGLTSEDESIESAEIRRIPQKYSSQIAEAC---GPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPIL 97 (115)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~s~~VR~t~l~aI~~La~~l---~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l 97 (115)
-|++-.+=-=+.+.+.+.....+...++.++..++..- ..-.....++|.+.++++++.++|+.+++.+|..++..-
T Consensus 184 ~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~ 263 (510)
T 3ul1_B 184 HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP 263 (510)
T ss_dssp TTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC
T ss_pred cCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhch
Confidence 34443332234455555455556666677777776432 223345789999999999999999999999999998654
Q ss_pred cch---hhhhcHHHHHHhh
Q psy14017 98 ETN---VIQSQVKPALDKL 113 (115)
Q Consensus 98 ~~~---~v~s~IkP~L~kL 113 (115)
... ..+..+.|.|.+|
T Consensus 264 ~~~~~~i~~~g~i~~Lv~l 282 (510)
T 3ul1_B 264 NERIEMVVKKGVVPQLVKL 282 (510)
T ss_dssp HHHHHHHHTTTCHHHHHHH
T ss_pred hhhHHHHHhcccchhhhhh
Confidence 321 3345566666654
No 49
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=90.78 E-value=0.51 Score=40.51 Aligned_cols=58 Identities=21% Similarity=0.216 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHHHHhhhChh-HHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc
Q psy14017 40 SAEIRRIPQKYSSQIAEACGPT-VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET 99 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~~e-ii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~ 99 (115)
++.+|.+++.++.+.+..+... ...+.++|.++..++| |.|+-.++.++..+++..+.
T Consensus 502 ~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~ 560 (963)
T 2x19_B 502 NVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKY 560 (963)
T ss_dssp SHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGG
T ss_pred cHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999987632 4677899999998887 89999999999999876653
No 50
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=90.67 E-value=0.46 Score=39.40 Aligned_cols=57 Identities=18% Similarity=0.079 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccc
Q psy14017 40 SAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI 96 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~ 96 (115)
++.+|..++.++..|+..-......+.++|.++++++++.++||-+++.+|..++..
T Consensus 237 ~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 237 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 293 (644)
T ss_dssp CHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 577888999999999876555556678999999999999999999999999998764
No 51
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=90.38 E-value=0.55 Score=36.38 Aligned_cols=76 Identities=11% Similarity=0.084 Sum_probs=55.7
Q ss_pred chhHHHHHHHHHHHHHHHhhhC--hhHHhHhHHHHHhh-hcCCCCcchhHHHHHHHHHhccccc---chhhhhcHHHHHH
Q psy14017 38 IESAEIRRIPQKYSSQIAEACG--PTVTANFLLPTVLN-MAGDNVANVRFNVAKTLQKIGPILE---TNVIQSQVKPALD 111 (115)
Q Consensus 38 ~~s~~VR~t~l~aI~~La~~l~--~eii~~~ILPivl~-L~kD~VPNVRfNVAK~L~~Ia~~l~---~~~v~s~IkP~L~ 111 (115)
-.+...|...+..+..+.+..+ .+....-.+|.++. +++++.|+||-.++.++..++..-+ ...++....|.|.
T Consensus 51 ~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 51 AADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHH
Confidence 3455688888888888887544 23444567899999 9999999999999999999986432 1244555666665
Q ss_pred hh
Q psy14017 112 KL 113 (115)
Q Consensus 112 kL 113 (115)
+|
T Consensus 131 ~L 132 (296)
T 1xqr_A 131 RL 132 (296)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 52
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=90.09 E-value=0.55 Score=40.48 Aligned_cols=57 Identities=18% Similarity=0.079 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccc
Q psy14017 40 SAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI 96 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~ 96 (115)
++.++..++.++..|+...........++|.++++++++.++||.+++.+|..++..
T Consensus 373 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~ 429 (780)
T 2z6g_A 373 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 429 (780)
T ss_dssp CHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred chHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 345777778888888876655555678999999999999999999999999999764
No 53
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=89.61 E-value=0.37 Score=40.70 Aligned_cols=58 Identities=7% Similarity=0.076 Sum_probs=50.1
Q ss_pred chhHHHHHHHHHHHHHHHhhhChhHHh-HhHHHHHhhhcCCCCcchhHHHHHHHHHhccc
Q psy14017 38 IESAEIRRIPQKYSSQIAEACGPTVTA-NFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI 96 (115)
Q Consensus 38 ~~s~~VR~t~l~aI~~La~~l~~eii~-~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~ 96 (115)
-.+++||.+.+.|+-.+.. ..++.+. +.+.+.+.+++.|+.|.|..++...+..+++.
T Consensus 159 d~~~~VRK~A~~al~kl~~-~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 217 (621)
T 2vgl_A 159 DTMDSVKQSAALCLLRLYR-TSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK 217 (621)
T ss_dssp SSCHHHHHHHHHHHHHHHH-HCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH-hChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh
Confidence 3589999999999999998 5566554 38999999999999999999999999988754
No 54
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=89.42 E-value=0.77 Score=38.02 Aligned_cols=74 Identities=18% Similarity=0.126 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHHHhhhC--hhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc---hhhhhcHHHHHHhh
Q psy14017 40 SAEIRRIPQKYSSQIAEACG--PTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET---NVIQSQVKPALDKL 113 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~--~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~---~~v~s~IkP~L~kL 113 (115)
++.+|...+.++..|+..-. ..+.....+|.++++++++.+.+|++++.+|..++..-+. ...+....|.|.++
T Consensus 70 ~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~l 148 (644)
T 2z6h_A 70 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 148 (644)
T ss_dssp CHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHG
T ss_pred CHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHH
Confidence 56788888888887775321 2233456899999999999999999999999999754322 23345667766654
No 55
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=89.34 E-value=1.3 Score=35.83 Aligned_cols=94 Identities=19% Similarity=0.143 Sum_probs=59.8
Q ss_pred ecCCcccccccCCCccccchhHHHHHHHHHHHHHHHhhh---ChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccc
Q psy14017 20 DLGGLGRFGLGLTSEDESIESAEIRRIPQKYSSQIAEAC---GPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI 96 (115)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~s~~VR~t~l~aI~~La~~l---~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~ 96 (115)
+.|++-.+=-=+.+.+.+.....+...++.++..++..- ..-.....++|.+.++++++.++|+.+++.+|..++..
T Consensus 202 ~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~ 281 (529)
T 3tpo_A 202 KHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG 281 (529)
T ss_dssp HTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS
T ss_pred HcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhh
Confidence 344443332234444444444555556666777666432 22345578999999999999999999999999998764
Q ss_pred ccch---hhhhcHHHHHHhh
Q psy14017 97 LETN---VIQSQVKPALDKL 113 (115)
Q Consensus 97 l~~~---~v~s~IkP~L~kL 113 (115)
-... .+...+.|.|.+|
T Consensus 282 ~~~~~~~v~~~g~i~~Lv~l 301 (529)
T 3tpo_A 282 PNERIEMVVKKGVVPQLVKL 301 (529)
T ss_dssp CHHHHHHHHTTTCHHHHHHH
T ss_pred hhhhHHHHHhccchHHHHHH
Confidence 3221 3445566666654
No 56
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=88.84 E-value=0.74 Score=35.88 Aligned_cols=60 Identities=20% Similarity=0.056 Sum_probs=52.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHhHH---HHHhhhcCCCCcchhHHHHHHHHHhcccccch
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLL---PTVLNMAGDNVANVRFNVAKTLQKIGPILETN 100 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~IL---Pivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~ 100 (115)
-|.-+|..|+..+..+-+..|.. ....+ |.+.+++.|+.++||=.+..++..+-...|.+
T Consensus 179 KN~R~R~e~l~~l~~li~~~G~~--~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 179 KNARQRSECLLVIEYYITNAGIS--PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ 241 (266)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCSG--GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCC--ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 35789999999999999999976 45678 99999999999999999999999887777654
No 57
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=88.76 E-value=1.2 Score=36.15 Aligned_cols=57 Identities=14% Similarity=0.082 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHHHhh---hChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccc
Q psy14017 40 SAEIRRIPQKYSSQIAEA---CGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI 96 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~---l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~ 96 (115)
++.++...+.|+..+|.. ....++..-.+|.++++++++.++||-+++.+|..|+..
T Consensus 114 ~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d 173 (510)
T 3ul1_B 114 CSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD 173 (510)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 467888899999999742 112344456899999999999999999999999999753
No 58
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=88.13 E-value=0.55 Score=36.52 Aligned_cols=68 Identities=9% Similarity=0.004 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHhh
Q psy14017 42 EIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113 (115)
Q Consensus 42 ~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~kL 113 (115)
-||-.++.++..++...++| ..+|.+...++|+.++||--+...+...+.......-.+.+.|+|..|
T Consensus 119 rVre~lA~a~~~~~~~~~pe----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L 186 (240)
T 3l9t_A 119 RVQEVLAKAFDEFCKKIEYK----KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADL 186 (240)
T ss_dssp HHHHHHHHHHHHHHHHHCTT----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHhcCHH----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHh
Confidence 46666666666666544444 255666677777777777776666544333222122234455555554
No 59
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=87.61 E-value=0.85 Score=40.19 Aligned_cols=61 Identities=10% Similarity=-0.056 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhCh-hHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGP-TVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET 99 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~-eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~ 99 (115)
+.+.+|.+++.++.+.+..+.. ......+++.++..+.|+.|.||-.++.++..+++..+.
T Consensus 512 ~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~ 573 (1049)
T 3m1i_C 512 NKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1049)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH
T ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4556776788899988876553 235677888888899999999999999999999987654
No 60
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=87.50 E-value=1.3 Score=38.07 Aligned_cols=74 Identities=19% Similarity=0.152 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHHHHhhhC--hhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc---hhhhhcHHHHHHhh
Q psy14017 40 SAEIRRIPQKYSSQIAEACG--PTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET---NVIQSQVKPALDKL 113 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~--~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~---~~v~s~IkP~L~kL 113 (115)
++.+|..++.++..|+..-. ..+.....+|.++++++++.+.||..++.+|..++..-+. ...+..+.|.|.++
T Consensus 206 d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~l 284 (780)
T 2z6g_A 206 DVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 284 (780)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHG
T ss_pred CHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHH
Confidence 67889999999988875421 2344467999999999999999999999999999754322 13345566666654
No 61
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=86.53 E-value=1.1 Score=35.87 Aligned_cols=73 Identities=12% Similarity=-0.021 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHhhhC---hhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc---hhhhhcHHHHHHhh
Q psy14017 41 AEIRRIPQKYSSQIAEACG---PTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET---NVIQSQVKPALDKL 113 (115)
Q Consensus 41 ~~VR~t~l~aI~~La~~l~---~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~---~~v~s~IkP~L~kL 113 (115)
+.++...+.++..++..-. ..+.....+|.+.++++++.+++++.++.+|..|+..-+. ..++.-..|.|.+|
T Consensus 16 ~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~l 94 (457)
T 1xm9_A 16 EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSL 94 (457)
T ss_dssp THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHH
Confidence 4678888888888874322 2566678899999999999999999999999999864111 13345556666654
No 62
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=86.43 E-value=0.89 Score=38.70 Aligned_cols=74 Identities=14% Similarity=0.111 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHHHHhhhC--hhHHhHhHH-HHHhhhcCCCCcchhHHHHHHHHHhcccccch----hhhhcHHHHHHh
Q psy14017 40 SAEIRRIPQKYSSQIAEACG--PTVTANFLL-PTVLNMAGDNVANVRFNVAKTLQKIGPILETN----VIQSQVKPALDK 112 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~--~eii~~~IL-Pivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~----~v~s~IkP~L~k 112 (115)
++..|...+.|+..|+..-. +....+.++ |++.+++.|+.+.||-.++-+|..|+..-+.+ .+.+.|.|.|..
T Consensus 47 ~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il~~L~~ 126 (684)
T 4gmo_A 47 DAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDVLTAIEH 126 (684)
T ss_dssp CCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcChHHHHHH
Confidence 45789999999999986321 223445555 55677999999999999999999987654443 345567666654
Q ss_pred h
Q psy14017 113 L 113 (115)
Q Consensus 113 L 113 (115)
+
T Consensus 127 ~ 127 (684)
T 4gmo_A 127 A 127 (684)
T ss_dssp H
T ss_pred H
Confidence 3
No 63
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=85.93 E-value=2 Score=34.82 Aligned_cols=57 Identities=4% Similarity=-0.007 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHHHHhhhChhH----HhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccc
Q psy14017 40 SAEIRRIPQKYSSQIAEACGPTV----TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI 96 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~~ei----i~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~ 96 (115)
+..+|..++.|+..++.....+. +...++|.+.+|++.+.++++.+++.+|..|.+.
T Consensus 390 ~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~ 450 (529)
T 3tpo_A 390 DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 450 (529)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 45788999999999887656553 3467899999999999999999999999887543
No 64
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=85.84 E-value=1.9 Score=34.04 Aligned_cols=75 Identities=9% Similarity=0.038 Sum_probs=54.5
Q ss_pred chhHHHHHHHHHHHHHHHhhh--ChhHH--hHhHHHHHhhhcCCCCcchhHHHHHHHHHhccc--cc--chhhhhcHHHH
Q psy14017 38 IESAEIRRIPQKYSSQIAEAC--GPTVT--ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI--LE--TNVIQSQVKPA 109 (115)
Q Consensus 38 ~~s~~VR~t~l~aI~~La~~l--~~eii--~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~--l~--~~~v~s~IkP~ 109 (115)
..++.+|...+.++..|+..- .+..+ ..-.+|.++++++.+.++++.+++.+|..++.. -+ ....+....|.
T Consensus 95 ~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~ 174 (354)
T 3nmw_A 95 HYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKA 174 (354)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHH
Confidence 357789999999999997431 23333 345799999999999999999999999999763 11 12344555666
Q ss_pred HHh
Q psy14017 110 LDK 112 (115)
Q Consensus 110 L~k 112 (115)
|.+
T Consensus 175 Lv~ 177 (354)
T 3nmw_A 175 LME 177 (354)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 65
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=85.28 E-value=1.3 Score=38.14 Aligned_cols=56 Identities=2% Similarity=-0.079 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHHHHhhhChh-HHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccccc
Q psy14017 40 SAEIRRIPQKYSSQIAEACGPT-VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE 98 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~~e-ii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~ 98 (115)
.+.||.+.+.++..+++.+..+ .....++|.++..+ | |.|+-.++.++..+++..+
T Consensus 519 ~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~ 575 (971)
T 2x1g_F 519 NVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQ 575 (971)
T ss_dssp CHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999998743 35677888888877 5 9999999999999997665
No 66
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=84.33 E-value=2.6 Score=33.67 Aligned_cols=90 Identities=13% Similarity=0.132 Sum_probs=63.0
Q ss_pred eeecCCcccccccCCCccccchhHHHHHHHHHHHHHHHh---hhChhHHhHhHHHHHhhhcC-CCCcchhHHHHHHHHHh
Q psy14017 18 VRDLGGLGRFGLGLTSEDESIESAEIRRIPQKYSSQIAE---ACGPTVTANFLLPTVLNMAG-DNVANVRFNVAKTLQKI 93 (115)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~s~~VR~t~l~aI~~La~---~l~~eii~~~ILPivl~L~k-D~VPNVRfNVAK~L~~I 93 (115)
+.+.||+-.+---|.+. ++.++...+.++..|+. ..-..++..-.+|.++++++ ++.++++.+++.+|..+
T Consensus 40 i~~~g~i~~Lv~lL~s~-----~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nL 114 (457)
T 1xm9_A 40 VYQLGGICKLVDLLRSP-----NQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNL 114 (457)
T ss_dssp HHHTTHHHHHHHHTTSS-----CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 45667766665455543 45788888899998884 22233445667999999999 88999999999999999
Q ss_pred cccccc--hhhhhcHHHHHHhh
Q psy14017 94 GPILET--NVIQSQVKPALDKL 113 (115)
Q Consensus 94 a~~l~~--~~v~s~IkP~L~kL 113 (115)
+..-+. ..++ ...|.|.++
T Consensus 115 a~~~~~~~~i~~-g~i~~Lv~l 135 (457)
T 1xm9_A 115 SSTDELKEELIA-DALPVLADR 135 (457)
T ss_dssp HTSSSTHHHHHH-HHHHHHHHH
T ss_pred hcCHHhHHHHHh-ccHHHHHHH
Confidence 865221 1344 666666654
No 67
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=83.16 E-value=4.4 Score=30.49 Aligned_cols=72 Identities=11% Similarity=0.014 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHhh---hChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccc-cc--hhhhhcHHHHHHhh
Q psy14017 42 EIRRIPQKYSSQIAEA---CGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPIL-ET--NVIQSQVKPALDKL 113 (115)
Q Consensus 42 ~VR~t~l~aI~~La~~---l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l-~~--~~v~s~IkP~L~kL 113 (115)
.++...+.++..|+.. ....+...-.+|.++++++.+.++++++++.+|..|+..- ++ ...+.--.|.|.+|
T Consensus 25 ~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~l 102 (233)
T 3tt9_A 25 SRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQV 102 (233)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHH
Confidence 5666666777777743 2234555678899999999999999999999999998632 21 13344455555554
No 68
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=81.29 E-value=1.8 Score=37.37 Aligned_cols=60 Identities=10% Similarity=-0.069 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHHHhhhChhH--HhHhHHHHHhhhc-CCCCcchhHHHHHHHHHhcccccc
Q psy14017 40 SAEIRRIPQKYSSQIAEACGPTV--TANFLLPTVLNMA-GDNVANVRFNVAKTLQKIGPILET 99 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~~ei--i~~~ILPivl~L~-kD~VPNVRfNVAK~L~~Ia~~l~~ 99 (115)
+...|.+.++++..+++.+..+. ....+++.+..+. +|+.|-||..++.++.++++.+..
T Consensus 477 ~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~ 539 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLME 539 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-
T ss_pred cHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhc
Confidence 44689999999999999887543 3455677555555 478999999999999999988864
No 69
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=80.77 E-value=6.7 Score=35.78 Aligned_cols=69 Identities=14% Similarity=0.107 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHhhhChhHH---hHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHH
Q psy14017 41 AEIRRIPQKYSSQIAEACGPTVT---ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALD 111 (115)
Q Consensus 41 ~~VR~t~l~aI~~La~~l~~eii---~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~ 111 (115)
-+.+++.+.++..|+... ++.+ ...++|.+...+.|.=|+|.-..-+++.+++..+++..++.. .|.|.
T Consensus 148 w~~k~~~l~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~-~~~~~ 219 (986)
T 2iw3_A 148 WQEKIAILAAFSAMVDAA-KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERF-IPSLI 219 (986)
T ss_dssp HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGG-HHHHH
T ss_pred hHHHHHHHHHHHHHHHHh-HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhh-HHHHH
Confidence 477889999999999776 4444 478999999999999999999999999999999999877553 44443
No 70
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=80.09 E-value=3.5 Score=32.52 Aligned_cols=61 Identities=8% Similarity=-0.057 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHHHhh---hChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch
Q psy14017 40 SAEIRRIPQKYSSQIAEA---CGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN 100 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~---l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~ 100 (115)
+..++..++.++..++.. .-..++..-.+|.+.++++++.+++|-+++.+|..++..-..+
T Consensus 276 ~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 276 SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred ChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 345778888888888731 2233445677999999999999999999999999998764433
No 71
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=79.87 E-value=3.3 Score=33.31 Aligned_cols=53 Identities=11% Similarity=0.008 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGP 95 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~ 95 (115)
+++.+|...+.+++.+. .+ .+.+.+.+.+.+.+.|+.|-||-+++=+..++.+
T Consensus 116 ~N~~iR~lALRtL~~I~---~~-~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~ 168 (355)
T 3tjz_B 116 KEDSYRGPAVRALCQIT---DS-TMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLK 168 (355)
T ss_dssp SCHHHHHHHHHHHHHHC---CT-TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTT
T ss_pred CcHhHHHHHHHHHhcCC---CH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhc
Confidence 44555554444433332 22 2455566666666666666666666655555543
No 72
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=78.60 E-value=5.9 Score=32.56 Aligned_cols=75 Identities=9% Similarity=0.028 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHHHHHHHhhh--ChhHH--hHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccc--c--chhhhhcHHHHH
Q psy14017 39 ESAEIRRIPQKYSSQIAEAC--GPTVT--ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPIL--E--TNVIQSQVKPAL 110 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l--~~eii--~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l--~--~~~v~s~IkP~L 110 (115)
.++.++...+.++..|+..= .+..+ ....+|.++++++.+.++|+-+++-+|..++..- + ....+....|.|
T Consensus 212 ~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~L 291 (458)
T 3nmz_A 212 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 291 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHH
Confidence 56778888999999888431 22333 3567999999999999999999999999997631 1 123444556666
Q ss_pred Hhh
Q psy14017 111 DKL 113 (115)
Q Consensus 111 ~kL 113 (115)
.+|
T Consensus 292 V~l 294 (458)
T 3nmz_A 292 MEC 294 (458)
T ss_dssp HHH
T ss_pred HHH
Confidence 663
No 73
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=77.59 E-value=5.7 Score=33.91 Aligned_cols=74 Identities=14% Similarity=0.175 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHHHHhh---hChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccc--ccc--hhhhhcHHHHHHh
Q psy14017 40 SAEIRRIPQKYSSQIAEA---CGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI--LET--NVIQSQVKPALDK 112 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~---l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~--l~~--~~v~s~IkP~L~k 112 (115)
++.++...+.++..++.. .-..+....-+|.++++++.+.++|+++++.+|..|+.. -++ ..++.-..|.|.+
T Consensus 61 ~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~ 140 (584)
T 3l6x_A 61 LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVR 140 (584)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHH
Confidence 345666677788877742 123345567899999999999999999999999999863 222 2444555666655
Q ss_pred h
Q psy14017 113 L 113 (115)
Q Consensus 113 L 113 (115)
|
T Consensus 141 L 141 (584)
T 3l6x_A 141 L 141 (584)
T ss_dssp H
T ss_pred H
Confidence 4
No 74
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=76.69 E-value=1.1 Score=34.02 Aligned_cols=20 Identities=30% Similarity=0.180 Sum_probs=12.9
Q ss_pred HHhhhcCCCCcchhHHHHHH
Q psy14017 70 TVLNMAGDNVANVRFNVAKT 89 (115)
Q Consensus 70 ivl~L~kD~VPNVRfNVAK~ 89 (115)
.+..+++|+.++||.+++..
T Consensus 174 ll~~ll~D~d~~VR~aaa~~ 193 (244)
T 1lrv_A 174 SLGLMTQDPEPEVRRIVASR 193 (244)
T ss_dssp GGGGSTTCSSHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHh
Confidence 44456677777777777665
No 75
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=74.22 E-value=11 Score=32.78 Aligned_cols=56 Identities=14% Similarity=0.005 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccc
Q psy14017 41 AEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPIL 97 (115)
Q Consensus 41 ~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l 97 (115)
..+|..++.+|..++..--++ -+..++|.+..+++.+.++.+..+..+|..+.+..
T Consensus 99 ~~ir~~l~~~ia~ia~~d~p~-~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~ 154 (960)
T 1wa5_C 99 NNLQVQIGEAISSIADSDFPD-RWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRW 154 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHSTT-TCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHhhCcc-chhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 688999999999998875443 46899999999999999999999999999988755
No 76
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=73.53 E-value=1.9 Score=38.92 Aligned_cols=73 Identities=14% Similarity=0.050 Sum_probs=54.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhChh---HHhHhHHHHHhhhcC-----CCCcchhHHHHHHHHHhcccccchhhhhcHHHHH
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPT---VTANFLLPTVLNMAG-----DNVANVRFNVAKTLQKIGPILETNVIQSQVKPAL 110 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~e---ii~~~ILPivl~L~k-----D~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L 110 (115)
.+-+.|-++++|+..+++.+..+ .....++|.++.+.. |+-+-||-+++-++++.++++... .+.+.|.|
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~--~~~L~~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH--WNFLRTVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC--HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc--HHHHHHHH
Confidence 45789999999999999998865 356788888888876 566667778889999888888542 23455555
Q ss_pred Hhh
Q psy14017 111 DKL 113 (115)
Q Consensus 111 ~kL 113 (115)
..|
T Consensus 543 ~~L 545 (1023)
T 4hat_C 543 LKL 545 (1023)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 77
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=73.37 E-value=5.2 Score=35.77 Aligned_cols=75 Identities=8% Similarity=-0.000 Sum_probs=57.0
Q ss_pred chhHHHHHHHHHHHHHHHhhhChh-HHhHhHHHHHhh--hcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHhh
Q psy14017 38 IESAEIRRIPQKYSSQIAEACGPT-VTANFLLPTVLN--MAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113 (115)
Q Consensus 38 ~~s~~VR~t~l~aI~~La~~l~~e-ii~~~ILPivl~--L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~kL 113 (115)
.+.+.||.+....+...+..+... .....+|+.++. .+.|+.+.||-.++.++..+.+.+... +...+.+.|.++
T Consensus 506 ~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~-L~~~~~~il~~l 583 (980)
T 3ibv_A 506 HPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQ-VVNYTESSLAML 583 (980)
T ss_dssp CCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTT-CSSSHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHH-hhhHHHHHHHHH
Confidence 456899999999999999987632 245666777777 777889999999999999998887654 334555555544
No 78
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=71.01 E-value=12 Score=31.97 Aligned_cols=74 Identities=12% Similarity=0.136 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHHHHhhh---C---hhHH-hHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch-hhhhcHHHHHH
Q psy14017 40 SAEIRRIPQKYSSQIAEAC---G---PTVT-ANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN-VIQSQVKPALD 111 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l---~---~eii-~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~-~v~s~IkP~L~ 111 (115)
++.++..++-|+..|+.-- . ...+ .+..+|.+.+|+..+.+.|+-+++.+|..++...... .+.....|.|.
T Consensus 322 ~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV 401 (584)
T 3l6x_A 322 TPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLV 401 (584)
T ss_dssp CHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHH
Confidence 5778888888888886321 1 1122 2577999999999999999999999999997654432 55666777776
Q ss_pred hh
Q psy14017 112 KL 113 (115)
Q Consensus 112 kL 113 (115)
+|
T Consensus 402 ~L 403 (584)
T 3l6x_A 402 KN 403 (584)
T ss_dssp HT
T ss_pred HH
Confidence 54
No 79
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=70.13 E-value=6.4 Score=31.57 Aligned_cols=56 Identities=9% Similarity=0.046 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI 96 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~ 96 (115)
.+|+||.+.+.|+..|.+. .+|.+ +.+++-+.+++.|+.|-|-+++...|..+.+.
T Consensus 151 ~~pyVRk~A~l~~~kL~~~-~pe~v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~ 206 (355)
T 3tjz_B 151 KVPSVSSSALVSSLHLLKC-SFDVV-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKN 206 (355)
T ss_dssp SSHHHHHHHHHHHHHHTTT-CHHHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhcc-CHHHH-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh
Confidence 4789999999999998855 45654 68999999999999999999999998888753
No 80
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=70.01 E-value=2.8 Score=35.92 Aligned_cols=60 Identities=13% Similarity=-0.048 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhChh--HHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPT--VTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET 99 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~e--ii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~ 99 (115)
.+...|-++++|+..+++.+..+ .....+++.+..+.. +.|-||..++.++.++++.+..
T Consensus 461 ~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~-~~~~vr~~~~~~l~~~~~~l~~ 522 (963)
T 2x19_B 461 YSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISI-SNVQLADTVMFTIGALSEWLAD 522 (963)
T ss_dssp CCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCC-CSHHHHHHHHHHHHHTHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCC-CcHHHHHHHHHHHHHHHHHHHh
Confidence 35678999999999999988753 244567776665554 5788999999999999987753
No 81
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=69.70 E-value=7.7 Score=34.52 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHHHHHHhh--hChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccccc
Q psy14017 39 ESAEIRRIPQKYSSQIAEA--CGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE 98 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~--l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~ 98 (115)
+++.+|...+.++..+|.. .-..++..-.+|.++.++++..+.+|.+++.+|..++...+
T Consensus 507 ~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~ 568 (810)
T 3now_A 507 ESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITIN 568 (810)
T ss_dssp CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCC
Confidence 3477888888888888743 22334556789999999999999999999999999875543
No 82
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=69.00 E-value=20 Score=27.43 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHhh
Q psy14017 42 EIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113 (115)
Q Consensus 42 ~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~kL 113 (115)
..|...+..+.+++-.-+++ ...+++|.++.+..|+-.+||--++.-+++.... ...+...+.++|..|
T Consensus 30 ~~kl~~L~qa~el~~~~dp~-ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~L 98 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAE-LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSML 98 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGG-GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHh-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 47777788888876665565 7799999999999999999999999988877633 234556677777655
No 83
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=68.04 E-value=10 Score=33.68 Aligned_cols=74 Identities=12% Similarity=0.111 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHHHHhh---hChhHHh-HhHHHHHhhhcCCCCcchhHHHHHHHHHhccccc---chhhhhcHHHHHHh
Q psy14017 40 SAEIRRIPQKYSSQIAEA---CGPTVTA-NFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE---TNVIQSQVKPALDK 112 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~---l~~eii~-~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~---~~~v~s~IkP~L~k 112 (115)
...+|...+.|+..|+.. .-+.++. ...+|.+..|++++.+++|-.++.++..+...-+ ...++....|.|.+
T Consensus 678 d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~ 757 (810)
T 3now_A 678 DEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSG 757 (810)
T ss_dssp SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence 457888999999988862 2234455 6899999999999999999999999999875321 22555666777766
Q ss_pred h
Q psy14017 113 L 113 (115)
Q Consensus 113 L 113 (115)
|
T Consensus 758 L 758 (810)
T 3now_A 758 L 758 (810)
T ss_dssp S
T ss_pred H
Confidence 5
No 84
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=66.38 E-value=11 Score=34.41 Aligned_cols=67 Identities=18% Similarity=0.191 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhhh----ChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHh
Q psy14017 45 RIPQKYSSQIAEAC----GPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDK 112 (115)
Q Consensus 45 ~t~l~aI~~La~~l----~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~k 112 (115)
...+.++..|+... +.|...-.++|.++.+..|..++||=.+..+...+.+.+.+..+ ..++|.|.+
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~ 140 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-KALLPHLTN 140 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHH
Confidence 55667777777544 33555556789999999999999999999999999999988776 677777754
No 85
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=65.09 E-value=9.1 Score=34.52 Aligned_cols=62 Identities=10% Similarity=-0.049 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhCh-hHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGP-TVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN 100 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~-eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~ 100 (115)
..+.||.+++..+...++.+.. ....+.++..+...+.|+.|.|.-+++.++..|++.....
T Consensus 512 ~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~ 574 (1023)
T 4hat_C 512 NKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYH 574 (1023)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHH
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999998887642 1235666677777789999999999999999999877644
No 86
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=62.94 E-value=22 Score=27.99 Aligned_cols=60 Identities=10% Similarity=0.031 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHHHHhhhC---hhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc
Q psy14017 40 SAEIRRIPQKYSSQIAEACG---PTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET 99 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~---~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~ 99 (115)
.+.++.-.++++..+-..++ .-...+.++|.++++++++.-.|-+.+.|++..+....+-
T Consensus 46 D~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL 108 (265)
T 3b2a_A 46 DETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPM 108 (265)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCB
T ss_pred chHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCC
Confidence 45789999999998887753 2346789999999999999999999999999999766543
No 87
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=60.61 E-value=18 Score=29.61 Aligned_cols=57 Identities=9% Similarity=-0.053 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHHHh---hhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccc
Q psy14017 40 SAEIRRIPQKYSSQIAE---ACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI 96 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~---~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~ 96 (115)
+..++..++.++..++. ..-..++..-.+|.+.++++.+.+++|.+++.+|..|...
T Consensus 392 ~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 392 SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 34578888888888873 2223345567899999999999999999999999999765
No 88
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=60.50 E-value=7.1 Score=34.35 Aligned_cols=60 Identities=13% Similarity=0.056 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHHhhhChh---HHhHhHHHHHhhhc-----CCCCcchhHHHHHHHHHhcccccc
Q psy14017 40 SAEIRRIPQKYSSQIAEACGPT---VTANFLLPTVLNMA-----GDNVANVRFNVAKTLQKIGPILET 99 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~~e---ii~~~ILPivl~L~-----kD~VPNVRfNVAK~L~~Ia~~l~~ 99 (115)
+...|-++++|+..+++.++.+ .....+++.+..+. +|+-|-||.+++.++.+.++.+..
T Consensus 466 ~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~ 533 (1049)
T 3m1i_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKA 533 (1049)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHh
Confidence 4577999999999999887765 23566667666654 367777887788888888877654
No 89
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=60.36 E-value=28 Score=26.84 Aligned_cols=58 Identities=12% Similarity=0.153 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN 100 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~ 100 (115)
+...||...-..+..+..+.++. .+.+.+...++...+.+|--+...+..+.+..|..
T Consensus 144 ~k~~vR~~~r~il~~l~~v~~~~----~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~ 201 (266)
T 2of3_A 144 AKDNMRTSVRDIVNVLSDVVGPL----KMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS 201 (266)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCHH----HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG
T ss_pred ChHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC
Confidence 34579999999999998876655 56677777778899999999999999888877765
No 90
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=57.98 E-value=24 Score=24.95 Aligned_cols=49 Identities=6% Similarity=-0.042 Sum_probs=36.8
Q ss_pred HHHHHHHhhh--ChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccc
Q psy14017 49 KYSSQIAEAC--GPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPIL 97 (115)
Q Consensus 49 ~aI~~La~~l--~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l 97 (115)
+.+.++|... ..+...+.|++++.+-++|.-|||.+.+.|.|+-+...-
T Consensus 30 ylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~G 80 (140)
T 1vdy_A 30 YKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKS 80 (140)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhC
Confidence 3444555443 223455899999999999999999999999999887654
No 91
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=56.64 E-value=8.4 Score=29.80 Aligned_cols=59 Identities=15% Similarity=0.091 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPIL 97 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l 97 (115)
++++||.+++.+.---+.......--+.++|++..+..|+.-=||=.|+-.|..+++.-
T Consensus 151 ~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~ 209 (240)
T 3l9t_A 151 SNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF 209 (240)
T ss_dssp SSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence 56799999888764322111223445779999999999999999999999999998764
No 92
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=52.43 E-value=3.6 Score=31.20 Aligned_cols=38 Identities=21% Similarity=0.202 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHH
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQ 91 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~ 91 (115)
+++.||.+.+..+ + .|.+..+++|+.+.||.++++.+.
T Consensus 182 ~d~~VR~aaa~~l-------~--------~~~L~~Ll~D~d~~VR~~aa~~l~ 219 (244)
T 1lrv_A 182 PEPEVRRIVASRL-------R--------GDDLLELLHDPDWTVRLAAVEHAS 219 (244)
T ss_dssp SSHHHHHHHHHHC-------C--------GGGGGGGGGCSSHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHhC-------C--------HHHHHHHHcCCCHHHHHHHHHcCC
Confidence 4568999888752 2 156788899999999999998876
No 93
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=52.07 E-value=29 Score=26.49 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGP 95 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~ 95 (115)
.+..+|.-++.-|.+.... +.....++++.+..|++|+.|+|-=.+..+...+-+
T Consensus 65 ~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~ 119 (257)
T 3gs3_A 65 SNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYK 119 (257)
T ss_dssp SCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 4578999888888777633 456888999999999999999998888887766543
No 94
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=51.67 E-value=20 Score=31.96 Aligned_cols=70 Identities=7% Similarity=0.052 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHHHHhhhChh--------HHhHhHHHHHhhhcC-----CCCcchhHHHHHHHHHhcccccchhhhhcH
Q psy14017 40 SAEIRRIPQKYSSQIAEACGPT--------VTANFLLPTVLNMAG-----DNVANVRFNVAKTLQKIGPILETNVIQSQV 106 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~~e--------ii~~~ILPivl~L~k-----D~VPNVRfNVAK~L~~Ia~~l~~~~v~s~I 106 (115)
+-..+-+.++++..+++.+... .....+++++..+++ |+.|-||.....++.+.++++.... +.+
T Consensus 456 ~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~--~~l 533 (980)
T 3ibv_A 456 SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYES--AAI 533 (980)
T ss_dssp HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCC--TTH
T ss_pred CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCc--hhH
Confidence 3577899999999999987642 223467888888855 8999999999999999999986432 334
Q ss_pred HHHHH
Q psy14017 107 KPALD 111 (115)
Q Consensus 107 kP~L~ 111 (115)
.|.|.
T Consensus 534 ~~~L~ 538 (980)
T 3ibv_A 534 PALIE 538 (980)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 95
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=49.97 E-value=48 Score=23.41 Aligned_cols=61 Identities=8% Similarity=0.082 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhCh----hHHhHhHHHHHhhhcCC-CCcchhHHHHHHHHHhcccccc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGP----TVTANFLLPTVLNMAGD-NVANVRFNVAKTLQKIGPILET 99 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~----eii~~~ILPivl~L~kD-~VPNVRfNVAK~L~~Ia~~l~~ 99 (115)
.++++..-.+.-+..+...||. ++..+.++.-+.++++. ..|.||-.+...++.++.....
T Consensus 64 ~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 64 KVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp SSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3567776777777788888886 66668888888887765 5578998888888888876654
No 96
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=47.64 E-value=55 Score=29.15 Aligned_cols=60 Identities=10% Similarity=0.116 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhC--hhHHhHhHHHHHhhhcCCCCcc---hhHHHHHHHHHhccccc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACG--PTVTANFLLPTVLNMAGDNVAN---VRFNVAKTLQKIGPILE 98 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~--~eii~~~ILPivl~L~kD~VPN---VRfNVAK~L~~Ia~~l~ 98 (115)
+++.+|..++.++..|+..-. ...+.+-.+|.++.++...-++ +|.+++.+|..+.-..+
T Consensus 469 ~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~n 533 (778)
T 3opb_A 469 LSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTN 533 (778)
T ss_dssp SCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCC
Confidence 467788888888888875422 3356688899999998887666 89999999999975544
No 97
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=47.45 E-value=34 Score=24.97 Aligned_cols=58 Identities=5% Similarity=-0.010 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch
Q psy14017 40 SAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN 100 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~ 100 (115)
.+.+|.....++..++..... ...++..+...++...|.||-.+...|..+....+..
T Consensus 116 k~~~~~~a~~~l~~~~~~~~~---~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~ 173 (278)
T 4ffb_C 116 RATTKTQSMSCILSLCGLDTS---ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLT 173 (278)
T ss_dssp CHHHHHHHHHHHHHHHHTSSS---SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCC
Confidence 456777777777777765432 2445677788899999999999999988887665544
No 98
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=45.79 E-value=55 Score=25.36 Aligned_cols=61 Identities=20% Similarity=0.300 Sum_probs=47.1
Q ss_pred CCCccccchhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccccc
Q psy14017 31 LTSEDESIESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE 98 (115)
Q Consensus 31 ~~~~~~~~~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~ 98 (115)
+||.| ..-|.+.++.|..++++ +.+ ...-+||-+..|+.|..-=||-.+..+|..++..-+
T Consensus 153 ltskd-----~~Dkl~aLnFi~alGen-~~~-yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~np 213 (253)
T 2db0_A 153 LSSKN-----REDKLTALNFIEAMGEN-SFK-YVNPFLPRIINLLHDGDEIVRASAVEALVHLATLND 213 (253)
T ss_dssp TSCSS-----HHHHHHHHHHHHTCCTT-THH-HHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH
T ss_pred hcCCC-----hHHHHHHHHHHHHHhcc-Ccc-ccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCH
Confidence 56655 45677888887777654 223 445789999999999999999999999999987643
No 99
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=43.85 E-value=30 Score=31.62 Aligned_cols=32 Identities=19% Similarity=-0.001 Sum_probs=24.3
Q ss_pred hHHHHHhhhcCCCCcchhHHHHHHHHHhcccc
Q psy14017 66 FLLPTVLNMAGDNVANVRFNVAKTLQKIGPIL 97 (115)
Q Consensus 66 ~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l 97 (115)
.+..++-.+.++..|+||+.++-+|..+..--
T Consensus 612 ~v~rlv~~L~~~~d~~VR~gAalALGli~aGn 643 (963)
T 4ady_A 612 TVPRIVQLLSKSHNAHVRCGTAFALGIACAGK 643 (963)
T ss_dssp SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCC
Confidence 34444445788899999999999999986433
No 100
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=43.17 E-value=28 Score=27.43 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=38.8
Q ss_pred HhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccch---hhhhcHHHHHHhhh
Q psy14017 63 TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETN---VIQSQVKPALDKLN 114 (115)
Q Consensus 63 i~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~---~v~s~IkP~L~kL~ 114 (115)
..+..+-++..+++|..+-|+.|+..+++.+.+..+.. ..-+.+.|.+.++.
T Consensus 30 ~~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~ll 84 (265)
T 3b2a_A 30 EDKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINAL 84 (265)
T ss_dssp HCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTC
T ss_pred hchhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 34557888999999999999999999999998875332 22355666666553
No 101
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=41.17 E-value=96 Score=25.17 Aligned_cols=68 Identities=15% Similarity=0.112 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHhh
Q psy14017 43 IRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113 (115)
Q Consensus 43 VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~kL 113 (115)
.+...+.-+.+|.-.-+++ +...++|-++.+..|+...||--++.-+++.+.. .......+.++|..|
T Consensus 41 ~Kl~~L~q~~EL~l~~dps-Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~~l~~L~~L 108 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPT-LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLKLIANLNML 108 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGG-GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHH-HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 5777777777776554454 6789999999999999999999998888877653 223335666666654
No 102
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=40.70 E-value=58 Score=26.50 Aligned_cols=53 Identities=15% Similarity=0.125 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhc
Q psy14017 40 SAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIG 94 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia 94 (115)
+..+|..++..|.+.+.. ..| ....+++.+..|++|+.|+|--.+..+...+-
T Consensus 76 ~~~vRk~~a~FieEa~~~-~~e-l~~~~l~~L~~LL~d~d~~V~K~~I~~~tslY 128 (386)
T 3o2t_A 76 SIEVRKFVIGFIEEACKR-DIE-LLLKLIANLNMLLRDENVNVVKKAILTMTQLY 128 (386)
T ss_dssp CHHHHHHHHHHHHHHHHH-CGG-GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 567999998888877743 344 45899999999999999998888888777664
No 103
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=40.50 E-value=47 Score=29.69 Aligned_cols=50 Identities=8% Similarity=0.029 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhc
Q psy14017 42 EIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIG 94 (115)
Q Consensus 42 ~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia 94 (115)
+||-+-+.++.-+.+.+.. ...++|.++..++|+.-+||-.+|.+|..++
T Consensus 278 EVRHGGLLGLKYL~DLL~~---Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 278 QVQFSGLIALGYLKEFVED---KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP 327 (800)
T ss_dssp HHHHHHHHHHHHTGGGCCC---HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC
T ss_pred eehhhhHHHHHHHHHHHHH---HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc
Confidence 5666666666666333322 5788899999999999999999999999988
No 104
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=40.17 E-value=38 Score=28.59 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=27.5
Q ss_pred HhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcc
Q psy14017 63 TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGP 95 (115)
Q Consensus 63 i~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~ 95 (115)
-.++|+|++-+ ++.+.|+.|..++.++..|+.
T Consensus 32 ~~~~i~Pll~~-L~S~~~~~r~~A~~al~~l~~ 63 (684)
T 4gmo_A 32 REDKILPVLKD-LKSPDAKSRTTAAGAIANIVQ 63 (684)
T ss_dssp HHHTTHHHHHH-HSSSCCSHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHH-cCCCCHHHHHHHHHHHHHHHc
Confidence 45689998765 678999999999999999986
No 105
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=38.39 E-value=66 Score=22.49 Aligned_cols=60 Identities=12% Similarity=0.068 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHHHhhhC----hhHHhHhHHHHHhhhcCC------CCcchhHHHHHHHHHhcccccc
Q psy14017 40 SAEIRRIPQKYSSQIAEACG----PTVTANFLLPTVLNMAGD------NVANVRFNVAKTLQKIGPILET 99 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~----~eii~~~ILPivl~L~kD------~VPNVRfNVAK~L~~Ia~~l~~ 99 (115)
++++=+-.+.-+..+...|| .++..+.++.-+.+++++ ..++||-.+...++.++..+..
T Consensus 61 n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 130 (149)
T 3g2s_A 61 QEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPE 130 (149)
T ss_dssp SHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 45565556666777777787 456678899999999876 4678999999999999877754
No 106
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=38.35 E-value=67 Score=21.96 Aligned_cols=60 Identities=10% Similarity=0.101 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHHHhhhCh----hHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccccc
Q psy14017 40 SAEIRRIPQKYSSQIAEACGP----TVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILET 99 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~~----eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~ 99 (115)
++++=+-.+.-+..+...||. ++..+.++.-+.++++..-|.||-.+...+..++.....
T Consensus 55 n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~ 118 (140)
T 3ldz_A 55 DPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKN 118 (140)
T ss_dssp SHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCC
Confidence 445544455566677777775 555688888888888778899999999999998877654
No 107
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=36.77 E-value=84 Score=23.30 Aligned_cols=74 Identities=12% Similarity=0.085 Sum_probs=52.0
Q ss_pred eeecCCcccccccCCCccccchhHHHHHHHHHHHHHHHhh---hChhHHhHhHHHHHhhhcC-CCCcchhHHHHHHHHHh
Q psy14017 18 VRDLGGLGRFGLGLTSEDESIESAEIRRIPQKYSSQIAEA---CGPTVTANFLLPTVLNMAG-DNVANVRFNVAKTLQKI 93 (115)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~s~~VR~t~l~aI~~La~~---l~~eii~~~ILPivl~L~k-D~VPNVRfNVAK~L~~I 93 (115)
|.+.||+-.+=-=|.| .++.++...+.|+.-|+.. --..+...--+|.++++++ .+.++++-+++.+|-.+
T Consensus 48 I~~~G~Ip~LV~lL~s-----~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nL 122 (233)
T 3tt9_A 48 VNQLRGILKLLQLLKV-----QNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNL 122 (233)
T ss_dssp HHHTTHHHHHHHGGGC-----CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 4456666544323333 3567888899999998852 1233445668999999997 47899999999999888
Q ss_pred ccc
Q psy14017 94 GPI 96 (115)
Q Consensus 94 a~~ 96 (115)
+..
T Consensus 123 S~~ 125 (233)
T 3tt9_A 123 SSN 125 (233)
T ss_dssp HTS
T ss_pred HcC
Confidence 754
No 108
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=36.43 E-value=23 Score=32.36 Aligned_cols=73 Identities=16% Similarity=0.059 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhChh---HHhHhHHHHHhhhcC-----CCCcchhHHHHHHHHHhcccccchhhhhcHHHHH
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPT---VTANFLLPTVLNMAG-----DNVANVRFNVAKTLQKIGPILETNVIQSQVKPAL 110 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~e---ii~~~ILPivl~L~k-----D~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L 110 (115)
.+-+.+-++++|+..+|..+..+ ....+++|.++.+.. |.-+=|+-++.=++++..+++... .+.+.|.+
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h--~~~L~~vl 568 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAH--WKFLKTVV 568 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHC--HHHHHHHH
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhC--HHHHHHHH
Confidence 45788999999999999888853 455667777776663 334456666555677766666532 24455555
Q ss_pred Hhh
Q psy14017 111 DKL 113 (115)
Q Consensus 111 ~kL 113 (115)
.+|
T Consensus 569 ~~L 571 (1073)
T 3gjx_A 569 NKL 571 (1073)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 109
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=34.22 E-value=98 Score=21.44 Aligned_cols=60 Identities=12% Similarity=0.093 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHHHhhhC----hhHHhHhHHHHHhhhcCC------CCcchhHHHHHHHHHhcccccc
Q psy14017 40 SAEIRRIPQKYSSQIAEACG----PTVTANFLLPTVLNMAGD------NVANVRFNVAKTLQKIGPILET 99 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~----~eii~~~ILPivl~L~kD------~VPNVRfNVAK~L~~Ia~~l~~ 99 (115)
++++=+-.+.-+..+...|| .++..+.++.-+.+++++ ..++||-.+...++.++..+..
T Consensus 51 n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 120 (148)
T 1mhq_A 51 QEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPE 120 (148)
T ss_dssp SHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 56666666666777777877 455679999999999886 3678999998888888877654
No 110
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=34.10 E-value=69 Score=24.79 Aligned_cols=51 Identities=18% Similarity=0.197 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhcccc
Q psy14017 45 RIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPIL 97 (115)
Q Consensus 45 ~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~l 97 (115)
+..+.++.+++.. .+| ....++|++..-.+=.-|.+|+|++-.|+.|+..-
T Consensus 88 qeIa~a~G~la~i-~Pe-~v~~vVp~lfanyrigd~kikIn~~yaLeeIaran 138 (253)
T 2db0_A 88 QEIAKAFGQMAKE-KPE-LVKSMIPVLFANYRIGDEKTKINVSYALEEIAKAN 138 (253)
T ss_dssp HHHHHHHHHHHHH-CHH-HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhHHHHh-CHH-HHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhC
Confidence 4566777777754 444 56788999999888889999999999999997653
No 111
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=31.45 E-value=95 Score=26.48 Aligned_cols=56 Identities=13% Similarity=0.200 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhChhHHhHhHHHHHhhhcCCCCcchhHHHHHHHHHhccc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI 96 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~eii~~~ILPivl~L~kD~VPNVRfNVAK~L~~Ia~~ 96 (115)
.++..++-.++-|..--...+ ...+.=+...++|+.|+.++||.++.|.|-.+++.
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP--~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~ 95 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFP--ELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG 95 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCG--GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT
T ss_pred CCHHHHHHHHHHHHHHHhhCh--hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh
Confidence 345566666666666665554 35677788899999999999999999999998874
No 112
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=30.97 E-value=57 Score=25.62 Aligned_cols=43 Identities=9% Similarity=0.074 Sum_probs=33.3
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhhChhHHh----HhHHHHHhhhcC
Q psy14017 34 EDESIESAEIRRIPQKYSSQIAEACGPTVTA----NFLLPTVLNMAG 76 (115)
Q Consensus 34 ~~~~~~s~~VR~t~l~aI~~La~~l~~eii~----~~ILPivl~L~k 76 (115)
.+.+-+.++.|.|.+-.|..|...=++|++. ..|+|..++.++
T Consensus 109 ~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime 155 (268)
T 2fv2_A 109 VSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIME 155 (268)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHH
T ss_pred ccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHh
Confidence 3445568899999999999999887777654 678888887543
No 113
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=28.42 E-value=36 Score=28.71 Aligned_cols=29 Identities=14% Similarity=0.146 Sum_probs=25.5
Q ss_pred hHHHHHhhhcCCCCcchhHHHHHHHHHhc
Q psy14017 66 FLLPTVLNMAGDNVANVRFNVAKTLQKIG 94 (115)
Q Consensus 66 ~ILPivl~L~kD~VPNVRfNVAK~L~~Ia 94 (115)
..-..|.+|+.++.||||+++.+|++++.
T Consensus 447 g~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 447 GGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp SHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 35678889999999999999999999875
No 114
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=27.81 E-value=18 Score=27.64 Aligned_cols=45 Identities=22% Similarity=0.445 Sum_probs=29.2
Q ss_pred CccCCCCCCeeeeee----------eeeecCCcccccccCCCccccchhHHHHHHH
Q psy14017 2 AHIRPRYGDYLRVGI----------SVRDLGGLGRFGLGLTSEDESIESAEIRRIP 47 (115)
Q Consensus 2 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~s~~VR~t~ 47 (115)
.-||||.|||.-=.. ..+++|-= -|=+|.-.+|..|.-+..+.-+
T Consensus 59 vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~Gad-GvV~G~Lt~dg~iD~~~~~~Li 113 (224)
T 2bdq_A 59 VMIRPRGGNFVYNDLELRIMEEDILRAVELESD-ALVLGILTSNNHIDTEAIEQLL 113 (224)
T ss_dssp EECCSSSSCSCCCHHHHHHHHHHHHHHHHTTCS-EEEECCBCTTSSBCHHHHHHHH
T ss_pred EEECCCCCCCcCCHHHHHHHHHHHHHHHHcCCC-EEEEeeECCCCCcCHHHHHHHH
Confidence 358999999874311 13455543 3567777888888877666544
No 115
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=27.64 E-value=1.3e+02 Score=22.04 Aligned_cols=61 Identities=11% Similarity=0.198 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhCh----hHHhHhHHHHHhhhcCC-CCcchhHHHHHHHHHhcccccc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGP----TVTANFLLPTVLNMAGD-NVANVRFNVAKTLQKIGPILET 99 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~----eii~~~ILPivl~L~kD-~VPNVRfNVAK~L~~Ia~~l~~ 99 (115)
.++++-+-.+.-+..+...+|. ++..+.++..+.++++. ..++||-.+...++.++.....
T Consensus 57 ~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 57 KNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN 122 (226)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 4566666666777788888775 56678888888777654 3468999999999888877654
No 116
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=27.24 E-value=68 Score=23.33 Aligned_cols=61 Identities=13% Similarity=0.091 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhCh----hHHhHhHHHHHhhhcCC-CCcchhHHHHHHHHHhcccccc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGP----TVTANFLLPTVLNMAGD-NVANVRFNVAKTLQKIGPILET 99 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~----eii~~~ILPivl~L~kD-~VPNVRfNVAK~L~~Ia~~l~~ 99 (115)
.++++-.-.+.-+..+...+|+ ++..+.++..+.+++++ +.++||-.+...++.++.....
T Consensus 54 ~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (220)
T 1dvp_A 54 PNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRS 119 (220)
T ss_dssp SSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 4566666666677777777765 55667788887777654 4578888888888877766543
No 117
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=26.60 E-value=78 Score=28.19 Aligned_cols=57 Identities=12% Similarity=0.105 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHHHHHHh---hhChhHHhH-hHHHHHhhhcCC--CCcchhHHHHHHHHHhcc
Q psy14017 39 ESAEIRRIPQKYSSQIAE---ACGPTVTAN-FLLPTVLNMAGD--NVANVRFNVAKTLQKIGP 95 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~---~l~~eii~~-~ILPivl~L~kD--~VPNVRfNVAK~L~~Ia~ 95 (115)
+...+|.+.+-|+..++. .+-...+.. ..+..++.+++| +.+++|-+.+.++..++.
T Consensus 666 ~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 666 SDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp SCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 345788888888888753 333444554 588899999999 899999999999999986
No 118
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=26.30 E-value=1.1e+02 Score=21.78 Aligned_cols=60 Identities=13% Similarity=0.070 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHHHhhhCh----hHHhHhHHHHHhhhcCC------CCcchhHHHHHHHHHhcccccc
Q psy14017 40 SAEIRRIPQKYSSQIAEACGP----TVTANFLLPTVLNMAGD------NVANVRFNVAKTLQKIGPILET 99 (115)
Q Consensus 40 s~~VR~t~l~aI~~La~~l~~----eii~~~ILPivl~L~kD------~VPNVRfNVAK~L~~Ia~~l~~ 99 (115)
++++..-.+.-+..+...||. ++..+.++.-+.+++++ ..+.||-.+...++.++.....
T Consensus 63 n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 132 (171)
T 1juq_A 63 QEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPE 132 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 566666666677777777774 66778899999998864 3478999999999998877754
No 119
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=25.79 E-value=97 Score=28.08 Aligned_cols=61 Identities=11% Similarity=-0.016 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHHHHHHhhhChh-HHhHhHHHHHhhhcCC------------CCcchhHHHHHHHHHhcccccc
Q psy14017 39 ESAEIRRIPQKYSSQIAEACGPT-VTANFLLPTVLNMAGD------------NVANVRFNVAKTLQKIGPILET 99 (115)
Q Consensus 39 ~s~~VR~t~l~aI~~La~~l~~e-ii~~~ILPivl~L~kD------------~VPNVRfNVAK~L~~Ia~~l~~ 99 (115)
+.|.+|.+...++..++..+... .....+|..++..+.| .+.+||..++.++..++.....
T Consensus 544 ~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~ 617 (1204)
T 3a6p_A 544 KDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQ 617 (1204)
T ss_dssp SCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred CChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhH
Confidence 46789999999999998886622 2344555555555555 2448999999999999887753
No 120
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=23.17 E-value=24 Score=27.42 Aligned_cols=45 Identities=29% Similarity=0.426 Sum_probs=29.0
Q ss_pred CccCCCCCCeeeeee----------eeeecCCcccccccCCCccccchhHHHHHHH
Q psy14017 2 AHIRPRYGDYLRVGI----------SVRDLGGLGRFGLGLTSEDESIESAEIRRIP 47 (115)
Q Consensus 2 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~s~~VR~t~ 47 (115)
.-||||.|||.-=.. ..+++|-= -|=+|.-.+|..|.-+..+.-+
T Consensus 56 vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~Gad-GvV~G~Lt~dg~iD~~~~~~Li 110 (256)
T 1twd_A 56 PIIRPRGGDFCYSDGEFAAILEDVRTVRELGFP-GLVTGVLDVDGNVDMPRMEKIM 110 (256)
T ss_dssp EBCCSSSSCSCCCHHHHHHHHHHHHHHHHTTCS-EEEECCBCTTSSBCHHHHHHHH
T ss_pred EEECCCCCCCcCCHHHHHHHHHHHHHHHHcCCC-EEEEeeECCCCCcCHHHHHHHH
Confidence 459999999874321 13445433 3567777788888877665544
No 121
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=20.63 E-value=58 Score=25.21 Aligned_cols=42 Identities=26% Similarity=0.340 Sum_probs=28.4
Q ss_pred HHhhhcCCCCcchhHHHHHHHHHhcccccchhhhhcHHHHHHhhh
Q psy14017 70 TVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKLN 114 (115)
Q Consensus 70 ivl~L~kD~VPNVRfNVAK~L~~Ia~~l~~~~v~s~IkP~L~kL~ 114 (115)
.+..|++|+..| +.+.+.|.. +..-....+-+.++|.+.+|.
T Consensus 303 ~l~~L~~D~~gN--yViq~~l~~-~~~~~~~~l~~~i~p~l~~L~ 344 (369)
T 3k49_A 303 PMILMIKDQFAN--YVIQKLVNV-SEGEGKKLIVIAIRAYLDKLN 344 (369)
T ss_dssp HHHHHHTSTTHH--HHHHHHHHH-CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcchH--HHHHHHHHh-CCHHHHHHHHHHHHHHHHHHh
Confidence 366799998877 566666654 433334566678899888874
Done!