RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy14017
         (115 letters)



>gnl|CDD|202500 pfam02985, HEAT, HEAT repeat.  The HEAT repeat family is related
          to armadillo/beta-catenin-like repeats (see pfam00514).
          Length = 31

 Score = 33.3 bits (77), Expect = 0.002
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 67 LLPTVLNMAGDNVANVRFNVAKTLQKIGPIL 97
          LLP +L +  D    VR   A+ L  +  +L
Sbjct: 1  LLPLLLELLNDPDPEVREAAAEALGALAEVL 31


>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
            (vWA) domain [General function prediction only].
          Length = 4600

 Score = 29.6 bits (66), Expect = 0.35
 Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 5/81 (6%)

Query: 30   GLTSEDESIESAEIRRIPQKYSSQIAEACGPTVTA----NFLLPTVLNMAGDNVANVRFN 85
            G++S D    S        K         GP V A    +F L   +++A D+V   R N
Sbjct: 1256 GISSSDNDNLSFIGESFIFKNRKLFEWKDGPLVKAMKCGDFFLLDEISLADDSVLE-RLN 1314

Query: 86   VAKTLQKIGPILETNVIQSQV 106
                 Q+   + ET     +V
Sbjct: 1315 SVLESQRTLYLTETGNAAEEV 1335


>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats.  This family includes multiple
          HEAT repeats.
          Length = 88

 Score = 25.4 bits (56), Expect = 3.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 68 LPTVLNMAGDNVANVRFNVAKTLQKIG 94
          LP +L +  D    VR   A+ L K+G
Sbjct: 33 LPALLELLKDPDPEVRRAAAEALGKLG 59


>gnl|CDD|227577 COG5252, COG5252, Uncharacterized conserved protein, contains
           CCCH-type Zn-finger protein [General function prediction
           only].
          Length = 299

 Score = 26.2 bits (57), Expect = 4.0
 Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 1/58 (1%)

Query: 36  ESIESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKI 93
           E +   E RR P+K   +        V A FL  T         A+     A+  +K 
Sbjct: 61  EKMRMEEKRREPEKQVIRAGVDPKTVVCALFLNKTCAKGDACKFAH-GKEEARKTEKP 117


>gnl|CDD|211614 TIGR00885, fucP, L-fucose:H+ symporter permease.  This family
           describes the L-fucose permease in bacteria.
           L-fucose(6-deoxy-L-galactose) is a monosaccharide found
           in glycoproteins and cell wall polysaccharides. L-fucose
           is used in bacteria through an inducible pathway
           mediated by atleast four enzymes: a permease, isomerase,
           kinase and an aldolase which are encoded by fucP, fucI,
           fucK, fucA respectively. The fuc genes belong to a
           regulon comprising of four linked operons: fucO, fucA,
           fucPIK and fucR. The positive regulator is encoded by
           fucR, whose protein responds to fuculose-1-phosphate,
           which acts as an effector [Transport and binding
           proteins, Carbohydrates, organic alcohols, and acids].
          Length = 408

 Score = 26.0 bits (57), Expect = 4.8
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 11/60 (18%)

Query: 63  TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNV----IQSQVKP----ALDKLN 114
            AN   P +L M  ++ A  R N+A++    G I+   V    I S +       LDKL+
Sbjct: 114 AAN---PYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLS 170


>gnl|CDD|200084 TIGR01201, HU_rel, DNA-binding protein, histone-like, putative.
          This model describes a set of proteins related to but
          longer than DNA-binding protein HU. Its distinctive
          domain architecture compared to HU and related
          histone-like DNA-binding proteins justifies the
          designation as superfamily. Members include, so far,
          one from Bacteroides fragilis, a gut bacterium, and ten
          from Porphyromonas gingivalis, an oral anaerobe [DNA
          metabolism, Chromosome-associated proteins].
          Length = 145

 Score = 25.0 bits (55), Expect = 7.6
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 10 DYLRVGISVRDLGGLGRFGLGLTSEDESIESAE 42
            L  G +VR LG +G F L  T++   +E AE
Sbjct: 64 RELANGKTVR-LGEIGTFRLSATAKGSGVEEAE 95


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.318    0.137    0.386 

Gapped
Lambda     K      H
   0.267   0.0715    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,701,208
Number of extensions: 473628
Number of successful extensions: 379
Number of sequences better than 10.0: 1
Number of HSP's gapped: 379
Number of HSP's successfully gapped: 15
Length of query: 115
Length of database: 10,937,602
Length adjustment: 79
Effective length of query: 36
Effective length of database: 7,433,636
Effective search space: 267610896
Effective search space used: 267610896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.2 bits)