RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14017
(115 letters)
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 69.7 bits (170), Expect = 2e-15
Identities = 39/62 (62%), Positives = 50/62 (80%)
Query: 52 SQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALD 111
+ ++E CG +T +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+
Sbjct: 505 NVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILE 564
Query: 112 KL 113
KL
Sbjct: 565 KL 566
Score = 40.8 bits (95), Expect = 3e-05
Identities = 13/61 (21%), Positives = 25/61 (40%)
Query: 53 QIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDK 112
IA+ ++PT+ A D VR+ VA ++ + + ++ + PA
Sbjct: 229 NIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQN 288
Query: 113 L 113
L
Sbjct: 289 L 289
Score = 40.0 bits (93), Expect = 5e-05
Identities = 14/75 (18%), Positives = 30/75 (40%)
Query: 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE 98
++ +RR + A+ + ++P N+A D +VR + I +L
Sbjct: 176 DTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLP 235
Query: 99 TNVIQSQVKPALDKL 113
+++ V P L +
Sbjct: 236 QEDLEALVMPTLRQA 250
Score = 38.5 bits (89), Expect = 2e-04
Identities = 14/62 (22%), Positives = 24/62 (38%)
Query: 52 SQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALD 111
++ G T LLP L D VR N+ L + ++ + + PA+
Sbjct: 349 MGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIV 408
Query: 112 KL 113
+L
Sbjct: 409 EL 410
Score = 38.5 bits (89), Expect = 2e-04
Identities = 12/75 (16%), Positives = 26/75 (34%)
Query: 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE 98
IR ++ E G ++P VL M+GD R + + +
Sbjct: 453 HVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG 512
Query: 99 TNVIQSQVKPALDKL 113
++ + P + ++
Sbjct: 513 QDITTKHMLPTVLRM 527
Score = 35.8 bits (82), Expect = 0.001
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPIL- 97
+S +R + +++ +A GP +T L+P N+ D A VR + +++ L
Sbjct: 254 KSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLS 313
Query: 98 ---ETNVIQSQVKPALDKL 113
NVI SQ+ P + +L
Sbjct: 314 ADCRENVIMSQILPCIKEL 332
Score = 35.0 bits (80), Expect = 0.003
Identities = 9/62 (14%), Positives = 19/62 (30%)
Query: 52 SQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALD 111
+A G L + D+V +R L+K+ + + P +
Sbjct: 427 PLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVL 486
Query: 112 KL 113
+
Sbjct: 487 AM 488
Score = 35.0 bits (80), Expect = 0.003
Identities = 12/83 (14%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Query: 31 LTSEDESIESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTL 90
+ + + +A ++ ++ ++ C V + +LP + + D +V+ +A +
Sbjct: 290 MKDCEAEVRAAASHKVK-EFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVI 348
Query: 91 QKIGPILETNVIQSQVKPALDKL 113
+ PIL + + P
Sbjct: 349 MGLSPILGKDNTIEHLLPLFLAQ 371
Score = 33.8 bits (77), Expect = 0.007
Identities = 11/61 (18%), Positives = 24/61 (39%)
Query: 53 QIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDK 112
G + LLP + ++A VR ++L+ I + +++ P + +
Sbjct: 74 TFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKR 133
Query: 113 L 113
L
Sbjct: 134 L 134
Score = 33.5 bits (76), Expect = 0.010
Identities = 13/75 (17%), Positives = 25/75 (33%)
Query: 39 ESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILE 98
E E+R + E G + LLP ++ +A D VR + + + + L
Sbjct: 375 ECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLG 434
Query: 99 TNVIQSQVKPALDKL 113
++
Sbjct: 435 VEFFDEKLNSLCMAW 449
Score = 31.5 bits (71), Expect = 0.049
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 31 LTSEDESIESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTL 90
L +ED + I+++ IA A G T + LLP + + D V +A+ L
Sbjct: 19 LRNEDVQLRLNSIKKLST-----IALALGVERTRSELLPFLTDTIYDE-DEVLLALAEQL 72
Query: 91 QKIGPILETNVIQSQVKPALDKL 113
++ + P L+ L
Sbjct: 73 GTFTTLVGGPEYVHCLLPPLESL 95
Score = 30.8 bits (69), Expect = 0.088
Identities = 11/77 (14%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 37 SIESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI 96
++E +R + I+ P+ +P V +AG + R + P
Sbjct: 97 TVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPR 156
Query: 97 LETNVIQSQVKPALDKL 113
+ ++ ++++++ L
Sbjct: 157 V-SSAVKAELRQYFRNL 172
Score = 29.2 bits (65), Expect = 0.27
Identities = 5/42 (11%), Positives = 16/42 (38%)
Query: 52 SQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKI 93
+I + + + P + + D +V++ + L +
Sbjct: 544 QKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 31.7 bits (71), Expect = 0.040
Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 52 SQIAEACGPTVTANFL---LPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKP 108
I + ++ LP++LN+ D V+ A + +I + ++ Q P
Sbjct: 394 GSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLP 453
Query: 109 AL 110
+
Sbjct: 454 GV 455
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 30.9 bits (69), Expect = 0.084
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 52 SQIAEACGPTVTANF--LLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPA 109
IAE C + L+P ++ D A VR TL + + + + +KP
Sbjct: 384 GAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPL 443
Query: 110 LDKL 113
+ +L
Sbjct: 444 MTEL 447
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear
transport receptor, cell cycle, translation; HET: GNP;
2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A
1f59_A 1o6o_A 1o6p_A
Length = 462
Score = 30.6 bits (68), Expect = 0.097
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 52 SQIAEACGPTVTANFL---LPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKP 108
I E P+ + +PT++ + D VR A T+ +I +L I
Sbjct: 391 GCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLA 450
Query: 109 AL 110
L
Sbjct: 451 PL 452
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.30A {Homo sapiens}
SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A
2qna_A
Length = 876
Score = 29.8 bits (66), Expect = 0.16
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 52 SQIAEACGPTVTANFL---LPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKP 108
I E P+ + +PT++ + D VR A T+ +I +L I
Sbjct: 391 GCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLA 450
Query: 109 AL 110
L
Sbjct: 451 PL 452
>2cye_A TTHA1846, putative thioesterase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: COA; 1.90A {Thermus thermophilus} SCOP:
d.38.1.1
Length = 133
Score = 26.0 bits (58), Expect = 2.0
Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 11/67 (16%)
Query: 7 RYGDYLRVGISVRDLGGL-GRFGLGLTSEDESIESAEI----------RRIPQKYSSQIA 55
GD + VG+ LG R +T+ ES +P+ +I
Sbjct: 67 LLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWLEGGRPAPLPEAIRERIR 126
Query: 56 EACGPTV 62
G +
Sbjct: 127 ALEGRPL 133
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.8 bits (56), Expect = 4.2
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 18/70 (25%)
Query: 44 RRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGP---ILETN 100
+RI + YS+ I E V + ++ + F + T
Sbjct: 1682 KRIRENYSAMIFETI---VDGKLKTEKIFKEINEHSTSYTFR--------SEKGLLSATQ 1730
Query: 101 VIQSQVKPAL 110
Q PAL
Sbjct: 1731 FTQ----PAL 1736
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage,
structural evolution, transcription; 1.40A {Xylella
fastidiosa}
Length = 79
Score = 24.5 bits (53), Expect = 4.7
Identities = 7/28 (25%), Positives = 9/28 (32%)
Query: 44 RRIPQKYSSQIAEACGPTVTANFLLPTV 71
R+P + I V L P V
Sbjct: 35 GRVPAERCIDIERVTNGAVICRELRPDV 62
>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure
initiative, PSI-2, NYSGXRC, structural genomics; 2.33A
{Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18
Length = 418
Score = 25.0 bits (55), Expect = 6.1
Identities = 6/23 (26%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 10 DYLRVGI-SVRDLGGLGRFGLGL 31
+ G +VR +G G + L
Sbjct: 101 VTFKSGFTTVRQVGDSGLVAISL 123
>3gnh_A L-lysine, L-arginine carboxypeptidase CC2672; N-methyl phosphonate
derivative of L- arginine, hydrolase; HET: KCX M3R;
1.70A {Caulobacter crescentus CB15} PDB: 3mtw_A*
Length = 403
Score = 25.0 bits (55), Expect = 6.3
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 10 DYLRVGI-SVRDLGGLGRFGLGL 31
L G +VR++G +GL
Sbjct: 96 KTLEAGFTTVRNVGAADYDDVGL 118
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein;
NMR {Saccharomyces cerevisiae}
Length = 108
Score = 24.4 bits (53), Expect = 6.3
Identities = 7/45 (15%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 57 ACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNV 101
AC + + + ++ + GD R V + + + + N+
Sbjct: 63 ACNGNIVKDPEMGEIIQLQGD----QRAKVCEFMISQLGLQKKNI 103
>3be7_A Zn-dependent arginine carboxypeptidase; unknown source,
amidohydrolase, sargasso SEA, structural GEN protein
structure initiative, PSI; HET: ARG; 2.30A
{Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A*
Length = 408
Score = 25.0 bits (55), Expect = 6.6
Identities = 5/23 (21%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 10 DYLRVGI-SVRDLGGLGRFGLGL 31
L G +VR++G + +
Sbjct: 95 KTLMAGFTTVRNVGAANYADVSV 117
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 25.0 bits (54), Expect = 7.0
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 67 LLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPAL 110
L+P + AG+ ++ ++TL I + I + P L
Sbjct: 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-KALLPHL 138
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive
structure, iron sulfur proteins, nitrogen fixation;
2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Length = 244
Score = 24.8 bits (54), Expect = 7.6
Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 4/64 (6%)
Query: 31 LTSEDESIESAEIRRIPQKYSSQIA----EACGPTVTANFLLPTVLNMAGDNVANVRFNV 86
D + + ++RIP + V ++ M D VR V
Sbjct: 131 AADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIV 190
Query: 87 AKTL 90
A L
Sbjct: 191 ASRL 194
>2p9b_A Possible prolidase; protein structure initiative II, PSI-2,
amidohydrolase, structural genomics; 1.70A
{Bifidobacterium longum NCC2705} SCOP: b.92.1.10
c.1.9.17
Length = 458
Score = 24.7 bits (54), Expect = 8.4
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 10 DYLRVGI-SVRDLGGLGRFGLGL 31
L G+ ++R LG +G + L
Sbjct: 123 TLLESGVTTIRTLGDVGYEVVTL 145
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.386
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,663,759
Number of extensions: 86140
Number of successful extensions: 201
Number of sequences better than 10.0: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 35
Length of query: 115
Length of database: 6,701,793
Length adjustment: 78
Effective length of query: 37
Effective length of database: 4,523,955
Effective search space: 167386335
Effective search space used: 167386335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.0 bits)