RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14017
         (115 letters)



>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein
           phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 588

 Score = 73.7 bits (179), Expect = 3e-17
 Identities = 39/62 (62%), Positives = 50/62 (80%)

Query: 52  SQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALD 111
           + ++E CG  +T   +LPTVL MAGD VANVRFNVAK+LQKIGPIL+ + +QS+VKP L+
Sbjct: 505 NVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILE 564

Query: 112 KL 113
           KL
Sbjct: 565 KL 566



 Score = 40.9 bits (94), Expect = 9e-06
 Identities = 13/74 (17%), Positives = 28/74 (37%)

Query: 42  EIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNV 101
           E+     +         G     + LLP + ++A      VR    ++L+ I      + 
Sbjct: 63  EVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSD 122

Query: 102 IQSQVKPALDKLNG 115
           +++   P + +L G
Sbjct: 123 LEAHFVPLVKRLAG 136



 Score = 35.9 bits (81), Expect = 4e-04
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 6/83 (7%)

Query: 31  LTSEDESIESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTL 90
           L +ED  +    I+++     S IA A G   T + LLP + +   D    V   +A+ L
Sbjct: 19  LRNEDVQLRLNSIKKL-----STIALALGVERTRSELLPFLTDTIYDE-DEVLLALAEQL 72

Query: 91  QKIGPILETNVIQSQVKPALDKL 113
                ++        + P L+ L
Sbjct: 73  GTFTTLVGGPEYVHCLLPPLESL 95



 Score = 27.8 bits (60), Expect = 0.28
 Identities = 8/54 (14%), Positives = 20/54 (37%)

Query: 41  AEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIG 94
           A +R    K   +I      +   + + P +  +  D   +V++   + L  + 
Sbjct: 533 ANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586



 Score = 26.7 bits (57), Expect = 0.71
 Identities = 11/77 (14%), Positives = 29/77 (37%), Gaps = 1/77 (1%)

Query: 37  SIESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPI 96
           ++E   +R    +    I+    P+      +P V  +AG +    R +         P 
Sbjct: 97  TVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPR 156

Query: 97  LETNVIQSQVKPALDKL 113
           + +  ++++++     L
Sbjct: 157 VSSA-VKAELRQYFRNL 172


>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 458

 Score = 39.0 bits (89), Expect = 4e-05
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 3/62 (4%)

Query: 52  SQIAEACGPTVTANFL---LPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKP 108
             I E   P+     +   +PT++ +  D    VR   A T+ +I  +L    I      
Sbjct: 390 GCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLA 449

Query: 109 AL 110
            L
Sbjct: 450 PL 451


>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein
           1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 1207

 Score = 25.5 bits (54), Expect = 2.3
 Identities = 6/51 (11%), Positives = 19/51 (37%)

Query: 63  TANFLLPTVLNMAGDNVANVRFNVAKTLQKIGPILETNVIQSQVKPALDKL 113
           +   ++  +L +  D    V+    K L  +   ++   +++ V      +
Sbjct: 42  SERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNM 92


>d2i74a1 b.18.1.29 (A:472-651) Peptide:N-glycanase, PNGase,
           C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 180

 Score = 24.1 bits (52), Expect = 4.6
 Identities = 9/44 (20%), Positives = 15/44 (34%)

Query: 31  LTSEDESIESAEIRRIPQKYSSQIAEACGPTVTANFLLPTVLNM 74
             S    +++  IR   Q + S        + TA   L    N+
Sbjct: 83  CGSAGLKVDTVSIRTSSQSFESGSVRWKLRSETAQVNLLGDKNL 126


>d1t8ha_ d.194.1.2 (A:) Hypothetical protein YlmD {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 272

 Score = 23.6 bits (50), Expect = 6.6
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 3/38 (7%)

Query: 72  LNMA---GDNVANVRFNVAKTLQKIGPILETNVIQSQV 106
           LNM    GD+  +V  N  +  + +   LE  V   QV
Sbjct: 42  LNMGLHVGDDRTDVVNNRRRLAEWLAFPLERWVCCEQV 79


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.137    0.386 

Gapped
Lambda     K      H
   0.267   0.0608    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 390,185
Number of extensions: 14836
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 9
Length of query: 115
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 42
Effective length of database: 1,405,306
Effective search space: 59022852
Effective search space used: 59022852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)