BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14029
(277 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FV2|A Chain A, The Hc Fragment Of Tetanus Toxin Complexed With An
Analogue Of Its Ganglioside Receptor Gt1b
pdb|1FV3|A Chain A, The Hc Fragment Of Tetanus Toxin Complexed With An
Analogue Of Its Ganglioside Receptor Gt1b
pdb|1FV3|B Chain B, The Hc Fragment Of Tetanus Toxin Complexed With An
Analogue Of Its Ganglioside Receptor Gt1b
Length = 472
Score = 33.9 bits (76), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 28/155 (18%)
Query: 102 NGFTFTTWFRLDPINSVNIEREKPYLYSFKTSK-------GVGYTAHFVGNCLVLTSMKI 154
N FT + W R+ +++ ++E+ YS +S G G++ GN L+ T
Sbjct: 105 NNFTVSFWLRVPKVSASHLEQYGTNEYSIISSMKKHSLSIGSGWSVSLKGNNLIWTLKDS 164
Query: 155 KGKGFQHCVKYEFQPRKWYMIAIVYIYNRWT--------KSEIKCFVNGQLASSTEMAWF 206
G+ Q + + P K+ Y+ N+W S ++NG L S E+
Sbjct: 165 AGEVRQ--ITFRDLPDKFN----AYLANKWVFITITNDRLSSANLYINGVLMGSAEITGL 218
Query: 207 VSTNEP------FDKCYIGAT-PELDEERVFCGQM 234
+ E D+C +D+ R+FC +
Sbjct: 219 GAIREDNNITLKLDRCNNNNQYVSIDKFRIFCKAL 253
>pdb|1D0H|A Chain A, The Hc Fragment Of Tetanus Toxin Complexed With N-Acetyl-
Galactosamine
Length = 469
Score = 33.9 bits (76), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 28/155 (18%)
Query: 102 NGFTFTTWFRLDPINSVNIEREKPYLYSFKTSK-------GVGYTAHFVGNCLVLTSMKI 154
N FT + W R+ +++ ++E+ YS +S G G++ GN L+ T
Sbjct: 102 NNFTVSFWLRVPKVSASHLEQYGTNEYSIISSMKKHSLSIGSGWSVSLKGNNLIWTLKDS 161
Query: 155 KGKGFQHCVKYEFQPRKWYMIAIVYIYNRWT--------KSEIKCFVNGQLASSTEMAWF 206
G+ Q + + P K+ Y+ N+W S ++NG L S E+
Sbjct: 162 AGEVRQ--ITFRDLPDKFN----AYLANKWVFITITNDRLSSANLYINGVLMGSAEITGL 215
Query: 207 VSTNEP------FDKCYIGAT-PELDEERVFCGQM 234
+ E D+C +D+ R+FC +
Sbjct: 216 GAIREDNNITLKLDRCNNNNQYVSIDKFRIFCKAL 250
>pdb|1DLL|A Chain A, The Hc Fragement Of Tetanus Toxin Complexed With Lactose
pdb|1YXW|A Chain A, A Common Binding Site For Disialyllactose And A
Tri-Peptide In The C-Fragment Of Tetanus Neurotoxin
pdb|1YYN|A Chain A, A Common Binding Site For Disialyllactose And A
Tri-Peptide In The C-Fragment Of Tetanus Neurotoxin
Length = 441
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 28/155 (18%)
Query: 102 NGFTFTTWFRLDPINSVNIEREKPYLYSFKTSK-------GVGYTAHFVGNCLVLTSMKI 154
N FT + W R+ +++ ++E+ YS +S G G++ GN L+ T
Sbjct: 74 NNFTVSFWLRVPKVSASHLEQYGTNEYSIISSMKKHSLSIGSGWSVSLKGNNLIWTLKDS 133
Query: 155 KGKGFQHCVKYEFQPRKWYMIAIVYIYNRWT--------KSEIKCFVNGQLASSTEMAWF 206
G+ Q + + P K+ Y+ N+W S ++NG L S E+
Sbjct: 134 AGEVRQ--ITFRDLPDKFN----AYLANKWVFITITNDRLSSANLYINGVLMGSAEITGL 187
Query: 207 VSTNEP------FDKCYIGAT-PELDEERVFCGQM 234
+ E D+C +D+ R+FC +
Sbjct: 188 GAIREDNNITLKLDRCNNNNQYVSIDKFRIFCKAL 222
>pdb|1A8D|A Chain A, Tetanus Toxin C Fragment
pdb|1AF9|A Chain A, Tetanus Neurotoxin C Fragment
Length = 452
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 28/155 (18%)
Query: 102 NGFTFTTWFRLDPINSVNIEREKPYLYSFKTSK-------GVGYTAHFVGNCLVLTSMKI 154
N FT + W R+ +++ ++E+ YS +S G G++ GN L+ T
Sbjct: 85 NNFTVSFWLRVPKVSASHLEQYGTNEYSIISSMKKHSLSIGSGWSVSLKGNNLIWTLKDS 144
Query: 155 KGKGFQHCVKYEFQPRKWYMIAIVYIYNRWT--------KSEIKCFVNGQLASSTEMAWF 206
G+ Q + + P K+ Y+ N+W S ++NG L S E+
Sbjct: 145 AGEVRQ--ITFRDLPDKFN----AYLANKWVFITITNDRLSSANLYINGVLMGSAEITGL 198
Query: 207 VSTNEP------FDKCYIGAT-PELDEERVFCGQM 234
+ E D+C +D+ R+FC +
Sbjct: 199 GAIREDNNITLKLDRCNNNNQYVSIDKFRIFCKAL 233
>pdb|1DIW|A Chain A, The Hc Fragment Of Tetanus Toxin Complexed With Galactose
Length = 441
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 28/155 (18%)
Query: 102 NGFTFTTWFRLDPINSVNIEREKPYLYSFKTSK-------GVGYTAHFVGNCLVLTSMKI 154
N FT + W R+ +++ ++E+ YS +S G G++ GN L+ T
Sbjct: 74 NNFTVSFWLRVPKVSASHLEQYGTNEYSIISSMKKHSLSIGSGWSVSLKGNNLIWTLKDS 133
Query: 155 KGKGFQHCVKYEFQPRKWYMIAIVYIYNRWT--------KSEIKCFVNGQLASSTEMAWF 206
G+ Q + + P K+ Y+ N+W S ++NG L S E+
Sbjct: 134 AGEVRQ--ITFRDLPDKFN----AYLANKWVFITITNDRLSSANLYINGVLMGSAEITGL 187
Query: 207 VSTNEP------FDKCYIGAT-PELDEERVFCGQM 234
+ E D+C +D+ R+FC +
Sbjct: 188 GAIREDNNITLKLDRCNNNNQYVSIDKFRIFCKAL 222
>pdb|3HMY|A Chain A, Crystal Structure Of Hcr/t Complexed With Gt2
pdb|3HN1|A Chain A, Crystal Structure Of HcrT COMPLEXED WITH GT2 AND LACTOSE
Length = 450
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 28/155 (18%)
Query: 102 NGFTFTTWFRLDPINSVNIEREKPYLYSFKTSK-------GVGYTAHFVGNCLVLTSMKI 154
N FT + W R+ +++ ++E+ YS +S G G++ GN L+ T
Sbjct: 83 NNFTVSFWLRVPKVSASHLEQYGTNEYSIISSMKKHSLSIGSGWSVSLKGNNLIWTLKDS 142
Query: 155 KGKGFQHCVKYEFQPRKWYMIAIVYIYNRWT--------KSEIKCFVNGQLASSTEMAWF 206
G+ Q + + P K+ Y+ N+W S ++NG L S E+
Sbjct: 143 AGEVRQ--ITFRDLPDKFN----AYLANKWVFITITNDRLSSANLYINGVLMGSAEITGL 196
Query: 207 VSTNEP------FDKCYIGAT-PELDEERVFCGQM 234
+ E D+C +D+ R+FC +
Sbjct: 197 GAIREDNNITLKLDRCNNNNQYVSIDKFRIFCKAL 231
>pdb|1DFQ|A Chain A, The Hc Fragment Of Tetanus Toxin Complexed With Sialic
Acid
Length = 444
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 28/155 (18%)
Query: 102 NGFTFTTWFRLDPINSVNIEREKPYLYSFKTSK-------GVGYTAHFVGNCLVLTSMKI 154
N FT + W R+ +++ ++E+ YS +S G G++ GN L+ T
Sbjct: 77 NNFTVSFWLRVPKVSASHLEQYGTNEYSIISSMKKHSLSIGSGWSVSLKGNNLIWTLKDS 136
Query: 155 KGKGFQHCVKYEFQPRKWYMIAIVYIYNRWT--------KSEIKCFVNGQLASSTEMAWF 206
G+ Q + + P K+ Y+ N+W S ++NG L S E+
Sbjct: 137 AGEVRQ--ITFRDLPDKFN----AYLANKWVFITITNDRLSSANLYINGVLMGSAEITGL 190
Query: 207 VSTNEP------FDKCYIGAT-PELDEERVFCGQM 234
+ E D+C +D+ R+FC +
Sbjct: 191 GAIREDNNITLKLDRCNNNNQYVSIDKFRIFCKAL 225
>pdb|1MUH|A Chain A, Crystal Structure Of Tn5 Transposase Complexed With
Transposon End Dna
Length = 481
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/103 (19%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Query: 57 PRHSTKLLNVLRQMPQRNGPDVFFSFPGKKGSAMVLPPLAKWPHENGFTFTTWFRLDPIN 116
PR + +L+NV Q+ + +G + S G K + + P+ + + +
Sbjct: 29 PRRTARLVNVAAQLAKYSGKSITISSEGSKAAQEGAYRFIRNPNVSAEAIR---KAGAMQ 85
Query: 117 SVNIEREKPYLYSFKTSKGVGYTAHFVGNCLVLTSMKIKGKGF 159
+V + +E P L + + + + Y L S++ K +G+
Sbjct: 86 TVKLAQEFPELLAIEDTTSLSYRHQVAEELGKLGSIQDKSRGW 128
>pdb|4DM0|A Chain A, Tn5 Transposase: 20mer Outside End 2 Mn Complex
Length = 477
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/103 (19%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Query: 57 PRHSTKLLNVLRQMPQRNGPDVFFSFPGKKGSAMVLPPLAKWPHENGFTFTTWFRLDPIN 116
PR + +L+NV Q+ + +G + S G K + + P+ + + +
Sbjct: 25 PRRTARLVNVAAQLAKYSGKSITISSEGSKAAQEGAYRFIRNPNVSAEAIR---KAGAMQ 81
Query: 117 SVNIEREKPYLYSFKTSKGVGYTAHFVGNCLVLTSMKIKGKGF 159
+V + +E P L + + + + Y L S++ K +G+
Sbjct: 82 TVKLAQEFPELLAIEDTTSLSYRHQVAEELGKLGSIQDKSRGW 124
>pdb|1MM8|A Chain A, Crystal Structure Of Tn5 Transposase Complexed With Me Dna
Length = 481
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/103 (19%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Query: 57 PRHSTKLLNVLRQMPQRNGPDVFFSFPGKKGSAMVLPPLAKWPHENGFTFTTWFRLDPIN 116
PR + +L+NV Q+ + +G + S G K + + P+ + + +
Sbjct: 29 PRRTARLVNVAAQLAKYSGKSITISSEGSKAAQEGAYRFIRNPNVSAEAIR---KAGAMQ 85
Query: 117 SVNIEREKPYLYSFKTSKGVGYTAHFVGNCLVLTSMKIKGKGF 159
+V + +E P L + + + + Y L S++ K +G+
Sbjct: 86 TVKLAQEFPELLAIEDTTSLSYRHQVAEELGKLGSIQDKSRGW 128
>pdb|3ECP|A Chain A, Crystal Structure Of Tn5 Transposase Complexed With 5'
Phosphorylated Transposon End Dna
Length = 477
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/103 (19%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Query: 57 PRHSTKLLNVLRQMPQRNGPDVFFSFPGKKGSAMVLPPLAKWPHENGFTFTTWFRLDPIN 116
PR + +L+NV Q+ + +G + S G K + + P+ + + +
Sbjct: 25 PRRTARLVNVAAQLAKYSGKSITISSEGSKAAQEGAYRFIRNPNVSAEAIR---KAGAMQ 81
Query: 117 SVNIEREKPYLYSFKTSKGVGYTAHFVGNCLVLTSMKIKGKGF 159
+V + +E P L + + + + Y L S++ K +G+
Sbjct: 82 TVKLAQEFPELLAIEDTTSLSYRHQVAEELGKLGSIQDKSRGW 124
>pdb|4D93|A Chain A, Crystal Structure Of Tep1s
pdb|4D93|B Chain B, Crystal Structure Of Tep1s
pdb|4D93|C Chain C, Crystal Structure Of Tep1s
Length = 1323
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 66/180 (36%), Gaps = 12/180 (6%)
Query: 36 SITVKELKLFFAAMKAVNNKWPRHSTKLLN-VLRQMP----QRNGPDVFFSFPGKKGSAM 90
S +K KL A++ + H T L V+R MP Q FF F K
Sbjct: 736 SFLIKARKLGEMAVRVKASIMLGHETDALEKVIRVMPESLAQPKMDTSFFCFDDYKNQTF 795
Query: 91 VLPPLAKWPHENGFTFTTWFRLDPINSVNIEREKPYLYSFKTSKGVGYTAHFVGNCLVLT 150
+NG + FRL+P + + L + T G FV N LVL
Sbjct: 796 PFNLDINKKADNG-SKKIEFRLNPNLLTMVIKNLDNLLAVPTGCGEQNMVKFVPNILVLD 854
Query: 151 SMKIKGKGFQHCV-KYEFQPRKWYMIAIVY-----IYNRWTKSEIKCFVNGQLASSTEMA 204
+ G QH + K R+ Y + Y + W KS F+ +A+S + A
Sbjct: 855 YLYATGSKEQHLIDKATNLLRQGYQNQMRYRQTDGSFGVWEKSGSSVFLTAFVATSMQTA 914
>pdb|2PN5|A Chain A, Crystal Structure Of Tep1r
Length = 1325
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 49/133 (36%), Gaps = 6/133 (4%)
Query: 36 SITVKELKLFFAAMKAVNNKWPRHSTKLLN-VLRQMP----QRNGPDVFFSFPGKKGSAM 90
S +K KL A++ + H T L V+R MP Q FF F K
Sbjct: 736 SFLIKARKLGEMAVRVKASIMLGHETDALEKVIRVMPESLVQPRMDTRFFCFDDHKNQTF 795
Query: 91 VLPPLAKWPHENGFTFTTWFRLDPINSVNIEREKPYLYSFKTSKGVGYTAHFVGNCLVLT 150
+ ++G T FRL+P + + +L T G FV N LVL
Sbjct: 796 PINLDINKKADSGST-KIEFRLNPNLLTTVIKNLDHLLGVPTGCGEQNMVKFVPNILVLD 854
Query: 151 SMKIKGKGFQHCV 163
+ G QH +
Sbjct: 855 YLHAIGSKEQHLI 867
>pdb|4D94|A Chain A, Crystal Structure Of Tep1r
Length = 1325
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 49/133 (36%), Gaps = 6/133 (4%)
Query: 36 SITVKELKLFFAAMKAVNNKWPRHSTKLLN-VLRQMP----QRNGPDVFFSFPGKKGSAM 90
S +K KL A++ + H T L V+R MP Q FF F K
Sbjct: 736 SFLIKARKLGEMAVRVKASIMLGHETDALEKVIRVMPESLVQPRMDTRFFCFDDHKNQTF 795
Query: 91 VLPPLAKWPHENGFTFTTWFRLDPINSVNIEREKPYLYSFKTSKGVGYTAHFVGNCLVLT 150
+ ++G T FRL+P + + +L T G FV N LVL
Sbjct: 796 PINLDINKKADSGST-KIEFRLNPNLLTTVIKNLDHLLGVPTGCGEQNMVKFVPNILVLD 854
Query: 151 SMKIKGKGFQHCV 163
+ G QH +
Sbjct: 855 YLHAIGSKEQHLI 867
>pdb|3VN3|A Chain A, Fungal Antifreeze Protein Exerts Hyperactivity By
Constructing An Inequable Beta-Helix
pdb|3VN3|B Chain B, Fungal Antifreeze Protein Exerts Hyperactivity By
Constructing An Inequable Beta-Helix
Length = 223
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 10/51 (19%)
Query: 73 RNGPDVFFSFPGKKGSAMVLPPLAKWPHENG----FTFT-----TW-FRLD 113
R+GPD + G G +LP L KW G FT + TW F++D
Sbjct: 97 RSGPDFLEIYTGALGGTTLLPGLYKWTSSVGASADFTISGTSTDTWIFQID 147
>pdb|1CFM|A Chain A, Cytochrome F From Chlamydomonas Reinhardtii
pdb|1CFM|B Chain B, Cytochrome F From Chlamydomonas Reinhardtii
pdb|1CFM|C Chain C, Cytochrome F From Chlamydomonas Reinhardtii
pdb|1EWH|A Chain A, Structure Of Cytochrome F From Chlamydomonas Reinhardtii
pdb|1EWH|B Chain B, Structure Of Cytochrome F From Chlamydomonas Reinhardtii
pdb|1EWH|C Chain C, Structure Of Cytochrome F From Chlamydomonas Reinhardtii
Length = 251
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 78 VFFSFPGKKGSAMVLPPLAKWPHENG----FTFTTWFRLDPINSVNIEREKPYLYSFKTS 133
V PGKK S MV+P L+ P +N + +F N R + Y K++
Sbjct: 114 VVGPVPGKKYSEMVVPILSPDPAKNKNVSYLKYPIYF------GGNRGRGQVYPDGKKSN 167
Query: 134 KGVGYTAHFVGNCLVLTSMKIKGKGFQHCVK 164
+ Y A G + +T++ K GF+ ++
Sbjct: 168 NTI-YNASAAGKIVAITALSEKKGGFEVSIE 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,831,788
Number of Sequences: 62578
Number of extensions: 356804
Number of successful extensions: 746
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 744
Number of HSP's gapped (non-prelim): 19
length of query: 277
length of database: 14,973,337
effective HSP length: 98
effective length of query: 179
effective length of database: 8,840,693
effective search space: 1582484047
effective search space used: 1582484047
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)