RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14029
(277 letters)
>gnl|CDD|222092 pfam13385, Laminin_G_3, Concanavalin A-like lectin/glucanases
superfamily. This domain belongs to the Concanavalin
A-like lectin/glucanases superfamily.
Length = 156
Score = 61.3 bits (149), Expect = 1e-11
Identities = 33/148 (22%), Positives = 55/148 (37%), Gaps = 14/148 (9%)
Query: 102 NGFTFTTWFRLDPINSVNIEREKPYLYSFKTSKGVGYTAHFVGNCLVLTSMKIKGKGFQH 161
FT + W + D + L S G G L T G
Sbjct: 22 GSFTVSAWVKPDSLPGGT-----RLLIGGSGSGGFGLGLD-GSGKLRFTVGGGGGGAATV 75
Query: 162 CVKYEFQPRKWYMIAIVYIYNRWTKSEIKCFVNGQLASSTEMAWFVSTNEPFDKCYIGAT 221
P +W+ +A+ Y +K +VNG L ST ++ +++ YIGA+
Sbjct: 76 TSGAPLPPGQWHHVAVTY-----DGGTLKLYVNGVLVGSTTLSGTITSGTTGP-LYIGAS 129
Query: 222 PELDEERVFCGQMAAIYLFNESLSTHQI 249
+R F G + + ++N +LS +I
Sbjct: 130 N--GGDRYFNGAIDEVRIYNRALSAAEI 155
>gnl|CDD|165225 PHA02902, PHA02902, putative IMV membrane protein; Provisional.
Length = 70
Score = 29.1 bits (65), Expect = 0.40
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 215 KCYIGATPELDEERVFCGQMAAIYLFNESLSTHQICAMHRL 255
K Y D + F + LF +SL+ QI A+HRL
Sbjct: 25 KRYKCIPSPDDRDERFGDTLEDDPLFKDSLTPDQIKALHRL 65
>gnl|CDD|226686 COG4233, COG4233, Uncharacterized protein predicted to be involved
in C-type cytochrome biogenesis [Posttranslational
modification, protein turnover, chaperones / Energy
production and conversion].
Length = 273
Score = 28.6 bits (64), Expect = 3.4
Identities = 14/66 (21%), Positives = 18/66 (27%), Gaps = 8/66 (12%)
Query: 57 PRHSTKLLNVLRQMPQRNGPDVFFSF-PGKKGSAMVLPPLAKWPHENGFTFTTWFRLDPI 115
L P+ G D F K + LPPL P +F
Sbjct: 164 SAARFTAERALAAQPRPAGLDASFDVAYQPKELEVTLPPLKGAPAA-----GAYF--VAE 216
Query: 116 NSVNIE 121
SV+
Sbjct: 217 PSVDFA 222
>gnl|CDD|216842 pfam02009, Rifin_STEVOR, Rifin/stevor family. Several multicopy
gene families have been described in Plasmodium
falciparum, including the stevor family of subtelomeric
open reading frames and the rif interspersed repetitive
elements. Both families contain three predicted
transmembrane segments. It has been proposed that stevor
and rif are members of a larger superfamily that code
for variant surface antigens.
Length = 290
Score = 28.5 bits (64), Expect = 3.6
Identities = 15/74 (20%), Positives = 20/74 (27%), Gaps = 9/74 (12%)
Query: 144 GNCLVLTSMKIKGKGFQHCVKYEFQPRKWYMIAIVYIYNRWTKSEIKCFVNGQLASSTEM 203
G L +K GK R I Y S + A + +
Sbjct: 138 GIAAGLKKLKGLGKYVVILKLN----RCTSGIINASNY-----SAPLTLIGAIAAKAATI 188
Query: 204 AWFVSTNEPFDKCY 217
VS NE C+
Sbjct: 189 CAAVSANEGSKCCF 202
>gnl|CDD|216266 pfam01051, Rep_3, Initiator Replication protein. This protein is
an initiator of plasmid replication. RepB possesses
nicking-closing (topoisomerase I) like activity. It is
also able to perform a strand transfer reaction on
ssDNA that contains its target. This family also
includes RepA which is an E.coli protein involved in
plasmid replication. The RepA protein binds to DNA
repeats that flank the repA gene.
Length = 218
Score = 27.6 bits (62), Expect = 6.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 31 VLASYSITVKELKLFFAAMKAVNNK 55
+ ASY +T+ ELKLFF + +
Sbjct: 12 IEASYKLTLLELKLFFLLLSKIKPD 36
>gnl|CDD|198442 cd10474, EphR_LBD_B4, Ligand Binding Domain of Ephrin type-B
Receptor 4. Ephrin receptors (EphRs) comprise the
largest subfamily of receptor tyrosine kinases (RTKs).
Class EphB receptors bind to transmembrane ephrin-B
ligands. There are six vertebrate EhpB receptors
(EphB1-6), which display promiscuous interactions with
three ephrin-B ligands. EphB4 plays a role in osteoblast
differentiation and has been linked to multiple myeloma.
EphRs contain a ligand binding domain and two
fibronectin repeats extracellularly, a transmembrane
segment, and a cytoplasmic tyrosine kinase domain.
Binding of the ephrin ligand to EphR requires cell-cell
contact since both are anchored to the plasma membrane.
The resulting downstream signals occur bidirectionally
in both EphR-expressing cells (forward signaling) and
ephrin-expressing cells (reverse signaling).
Length = 180
Score = 27.2 bits (60), Expect = 7.1
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 241 NESLSTHQICAMHRLG-PGYKVKTGWVE 267
S+ T+++C R G + ++TGWV
Sbjct: 36 QHSVRTYEVCDAQRAGGQAHWLRTGWVP 63
>gnl|CDD|177062 CHL00140, rpl6, ribosomal protein L6; Validated.
Length = 178
Score = 27.2 bits (61), Expect = 7.4
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 6/33 (18%)
Query: 134 KGVGYTAHFVGNCLVLTSMKIKGKGFQHCVKYE 166
+GVGY A G L+L G+ H VK +
Sbjct: 90 QGVGYRAQVQGKDLILNL------GYSHPVKIK 116
>gnl|CDD|213843 TIGR03654, L6_bact, ribosomal protein L6, bacterial type. [Protein
synthesis, Ribosomal proteins: synthesis and
modification].
Length = 175
Score = 27.0 bits (61), Expect = 7.9
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 6/33 (18%)
Query: 134 KGVGYTAHFVGNCLVLTSMKIKGKGFQHCVKYE 166
GVGY A G L L+ G+ H V+YE
Sbjct: 89 VGVGYRAQLQGKKLNLSL------GYSHPVEYE 115
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.136 0.441
Gapped
Lambda K H
0.267 0.0691 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,202,123
Number of extensions: 1308655
Number of successful extensions: 900
Number of sequences better than 10.0: 1
Number of HSP's gapped: 896
Number of HSP's successfully gapped: 14
Length of query: 277
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 181
Effective length of database: 6,679,618
Effective search space: 1209010858
Effective search space used: 1209010858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.2 bits)