RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14029
(277 letters)
>d1a8da1 b.29.1.6 (A:1-247) Tetanus neurotoxin {Clostridium tetani
[TaxId: 1513]}
Length = 247
Score = 42.9 bits (100), Expect = 2e-05
Identities = 26/165 (15%), Positives = 52/165 (31%), Gaps = 20/165 (12%)
Query: 102 NGFTFTTWFRLDPINS-------VNIEREKPYLYSFKTSKGVGYTAHFVGNCLVLT---- 150
N FT + W R+ +++ N + S G G++ GN L+ T
Sbjct: 85 NNFTVSFWLRVPKVSASHLEQYGTNEYSIISSMKKHSLSIGSGWSVSLKGNNLIWTLKDS 144
Query: 151 --SMKIKGKGFQHCVKYEFQPRKWYMIAIVYIYNRWTKSEIKCFVNGQLASSTEMAWFVS 208
++ + KW I I S ++NG L S E+ +
Sbjct: 145 AGEVRQITFRDLPDKFNAYLANKWVFITITNDRL----SSANLYINGVLMGSAEITGLGA 200
Query: 209 TNEPFDKCYIGATPELDEERVFCGQMAAIYLFNESLSTHQICAMH 253
+ + + +F ++L+ +I ++
Sbjct: 201 IR-EDNNITLKLDR--CNNNNQYVSIDKFRIFCKALNPKEIEKLY 242
>d1epwa1 b.29.1.6 (A:862-1079) Botulinum neurotoxin {Clostridium
botulinum, serotype B [TaxId: 1491]}
Length = 218
Score = 38.8 bits (89), Expect = 3e-04
Identities = 28/156 (17%), Positives = 52/156 (33%), Gaps = 16/156 (10%)
Query: 102 NGFTFTTWFRLDPINS--VNIEREKPYLYSFKTSKGVGYTAHFVGNCLVLTSMKIKGKGF 159
F+ + W R+ + + Y G+ GN ++ T + I GK
Sbjct: 62 LDFSVSFWIRIPKYKNDGIQNYIHNEYTIINCMKNNSGWKISIRGNRIIWTLIDINGKTK 121
Query: 160 QHCVKYE------FQPRKWYMIAIVYIYNRWTKSEIKCFVNGQLASSTEMAWFVSTNEPF 213
+Y +W+ + I + K ++NG+L S+T++
Sbjct: 122 SVFFEYNIREDISEYINRWFFVTITN-----NLNNAKIYINGKLESNTDIKDIREVI-AN 175
Query: 214 DKCYIGATPELDEERVFCGQMAAIYLFNESLSTHQI 249
+ ++D R M +FN LS I
Sbjct: 176 GEIIFKLDGDID--RTQFIWMKYFSIFNTELSQSNI 209
>d2slia1 b.29.1.9 (A:81-276) Leech intramolecular trans-sialidase,
N-terminal domain {North american leech (Macrobdella
decora) [TaxId: 6405]}
Length = 196
Score = 37.2 bits (85), Expect = 8e-04
Identities = 21/162 (12%), Positives = 47/162 (29%), Gaps = 23/162 (14%)
Query: 102 NGFTFTTWFRLDPINSVNIEREKPYLYSFKTSKGVGYTAHFVGNCLVLTSMKIKGKGFQH 161
T ++ N + L+S S HF + I+ +
Sbjct: 35 TQGTIILSYKSTSENGIQ------SLFSVGNSTAGNQDRHFHIYITNSGGIGIELRNTDG 88
Query: 162 CVKY-----------EFQPRKWYMIAIVYIYNRWTKSEIKCFVNGQLASSTEMA---WFV 207
Y R + +A+ + + F NG+L ++ + +
Sbjct: 89 VFNYTLDRPASVRALYKGERVFNTVALKA---DAANKQCRLFANGELLATLDKDAFKFIS 145
Query: 208 STNEPFDKCYIGATPELDEERVFCGQMAAIYLFNESLSTHQI 249
+ G + F G + I +++ +LS ++
Sbjct: 146 DITGVDNVTLGGTKRQGKIAYPFGGTIGDIKVYSNALSDEEL 187
>d1saca_ b.29.1.5 (A:) Serum amyloid P component (SAP) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 204
Score = 34.9 bits (79), Expect = 0.006
Identities = 22/183 (12%), Positives = 52/183 (28%), Gaps = 19/183 (10%)
Query: 80 FSFPGKKGSAMVLPPLAKWPHENGFTFTTWFRLDPINSVNIEREKPYLYSFKTSKGVGYT 139
F FP + + V FT D + ++ +S+ T
Sbjct: 9 FVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSL-------FSYNTQGRDNEL 61
Query: 140 AHFVGNCLVLTSMKIKGKGFQHCVKYEFQPRKWYMIAIVYIYNRWTKSEIKCFVNGQLAS 199
+ + + K K + I + + + + ++NG
Sbjct: 62 LVYKERVGEYSLYIGRHKVT---SKVIEKFPAPVHICVSW---ESSSGIAEFWINGTPLV 115
Query: 200 STEMAWFVSTNEPFDKCYIGATPE-----LDEERVFCGQMAAIYLFNESLSTHQICAMHR 254
+ +G + D + F G++ +Y+++ L I + ++
Sbjct: 116 KKGLRQGYFVEAQPK-IVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQ 174
Query: 255 LGP 257
P
Sbjct: 175 GTP 177
>d1b09a_ b.29.1.5 (A:) C-reactive protein (CRP) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 33.4 bits (75), Expect = 0.018
Identities = 20/182 (10%), Positives = 53/182 (29%), Gaps = 15/182 (8%)
Query: 80 FSFPGKKGSAMVLPPLAKWPHENGFTFTTWFRLDPINSVNIEREKPYLYSFKTSKGVGYT 139
F FP + ++ V FT F + ++ ++S+ T +
Sbjct: 9 FVFPKESDTSYVSLKAPLTKPLKAFTVCLHFYTELSSTRGY-----SIFSYATKRQDNEI 63
Query: 140 AHFVGNCLVLTSMKIKGKGFQHCVKYEFQPRKWYMIAIVYIYNRWTKSEIKCFVNGQLAS 199
F + + G + + I + ++ +V+G+
Sbjct: 64 LIFWSKDIGYS---FTVGGSEILFEVPEVTVAPVHICTSW---ESASGIVEFWVDGKPRV 117
Query: 200 STEMA----WFVSTNEPFDKCYIGATPELDEERVFCGQMAAIYLFNESLSTHQICAMHRL 255
+ + + + + G + + +++ LS +I ++
Sbjct: 118 RKSLKKGYTVGAEASIILGQEQDSFGGNFEGSQSLVGDIGNVNMWDFVLSPDEINTIYLG 177
Query: 256 GP 257
GP
Sbjct: 178 GP 179
>d2erfa1 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 206
Score = 30.0 bits (67), Expect = 0.20
Identities = 21/155 (13%), Positives = 42/155 (27%), Gaps = 24/155 (15%)
Query: 95 LAKWPHENGFTFTTWFRLDPINSVNIEREKPYLYSFKTSKGVGYTAHFVGNCLVLT-SMK 153
+ E GF R L + + G V N T +
Sbjct: 52 VDAVRTEKGFLLLASLRQMKKTRG-------TLLALERKDHSGQVFSVVSNGKAGTLDLS 104
Query: 154 IKGKGFQHCV---KYEFQPRKWYMIAIVYIYNRWTKSEIKCFVNGQLASSTEMAWFVSTN 210
+ +G QH V + +W I + + + +++ + + E+ + +
Sbjct: 105 LTVQGKQHVVSVEEALLATGQWKSITLF-----VQEDRAQLYIDCEKMENAELDVPIQSV 159
Query: 211 EPFDKCYIGATPELDEERVFCGQMAAIYLFNESLS 245
D I R+ + F L
Sbjct: 160 FTRDLASIA--------RLRIAKGGVNDNFQGVLQ 186
>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase,
central and FMN domains {Synechocystis sp. [TaxId:
1143]}
Length = 809
Score = 26.8 bits (59), Expect = 3.3
Identities = 5/47 (10%), Positives = 14/47 (29%), Gaps = 1/47 (2%)
Query: 176 AIVYIYNRWTKSEIKCFVNGQLASSTEMA-WFVSTNEPFDKCYIGAT 221
+ I ++ S + + Q+ + + V +G
Sbjct: 280 GLFKILSKMGISLLASYHGAQIFEAIGLGAELVEYAFAGTTSRVGGL 326
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 25.1 bits (54), Expect = 6.4
Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 2/72 (2%)
Query: 55 KWPRHSTKLLNVLRQMPQRN-GPDVFFSFPGKKGSAMVLPPLAKWPHENGFTFTTWFRLD 113
++ RH++ +L L ++ R+ DV ++ A L FT + +
Sbjct: 4 QFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHK-TVLMACSGLFYSIFTDQLKRN 62
Query: 114 PINSVNIEREKP 125
P
Sbjct: 63 LSVINLDPEINP 74
>d1repc1 a.4.5.10 (C:15-143) RepE54 {Escherichia coli, mini-F
plasmid [TaxId: 562]}
Length = 129
Score = 25.2 bits (55), Expect = 6.7
Identities = 3/23 (13%), Positives = 12/23 (52%)
Query: 33 ASYSITVKELKLFFAAMKAVNNK 55
A+YS++ + ++ + + +
Sbjct: 13 AAYSLSRDQKRMLYLFVDQIRKS 35
>d1hkqa_ a.4.5.10 (A:) Replication protein A, repA {Pseudomonas
syringae pv. savastanoi [TaxId: 29438]}
Length = 125
Score = 24.8 bits (54), Expect = 8.1
Identities = 5/23 (21%), Positives = 15/23 (65%)
Query: 33 ASYSITVKELKLFFAAMKAVNNK 55
+S+++T+ E +L A ++++
Sbjct: 8 SSHTLTLNEKRLVLCAASLIDSR 30
>d1hdma2 d.19.1.1 (A:13-93) Class II MHC alpha chain, N-terminal
domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}
Length = 81
Score = 24.0 bits (52), Expect = 8.2
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 77 DVFFSFPGKKGSAMV-LPPLAKWPHENG--FTFTTWFRLDPINSV-NIEREKP 125
D F F + + + LP A W E G F F I + ++ + P
Sbjct: 28 DQLFFFDFSQNTRVPRLPEFADWAQEQGDAILFDKEFCEWMIQQIPKLDGKIP 80
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.136 0.441
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,107,635
Number of extensions: 50931
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 15
Length of query: 277
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 193
Effective length of database: 1,254,276
Effective search space: 242075268
Effective search space used: 242075268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.0 bits)