RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1403
(384 letters)
>gnl|CDD|163657 cd07414, MPP_PP1_PPKL, PP1, PPKL (PP1 and kelch-like) enzymes, and
related proteins, metallophosphatase domain. PP1
(protein phosphatase type 1) is a serine/threonine
phosphatase that regulates many cellular processes
including: cell-cycle progression, protein synthesis,
muscle contraction, carbohydrate metabolism,
transcription and neuronal signaling, through its
interaction with at least 180 known targeting proteins.
PP1 occurs in all tissues and regulates many pathways,
ranging from cell-cycle progression to carbohydrate
metabolism. Also included here are the PPKL (PP1 and
kelch-like) enzymes including the PPQ, PPZ1, and PPZ2
fungal phosphatases. These PPKLs have a large
N-terminal kelch repeat in addition to a C-terminal
phosphoesterase domain. The PPP (phosphoprotein
phosphatase) family, to which PP1 belongs, is one of two
known protein phosphatase families specific for serine
and threonine. The PPP family also includes: PP2A, PP2B
(calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE,
PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain
is defined by three conserved motifs (-GDXHG-, -GDXVDRG-
and -GNHE-). The PPP enzyme family is ancient with
members found in all eukaryotes, and in most bacterial
and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 293
Score = 601 bits (1552), Expect = 0.0
Identities = 230/293 (78%), Positives = 262/293 (89%)
Query: 78 DLDLIIQKLLDLRGTRQRRNVRLEEKEIVSLIQISRKIFMSQPMLLELEPPLKICGDVHG 137
D+D II++LL++RG+R +NV+L E EI L SR+IF+SQP+LLELE PLKICGD+HG
Sbjct: 1 DIDSIIERLLEVRGSRPGKNVQLTEAEIRGLCLKSREIFLSQPILLELEAPLKICGDIHG 60
Query: 138 QYTDLLRLFDHGKFPPASNYLFLGDYVDRGKQSLETICLLLAYKIKHPETFFLLRGNHES 197
QY DLLRLF++G FPP SNYLFLGDYVDRGKQSLETICLLLAYKIK+PE FFLLRGNHE
Sbjct: 61 QYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHEC 120
Query: 198 ANINRIYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPDLDSFEDIK 257
A+INRIYGFYDECKRRYN+KLWKTFT+CFNC+PVAAI+DEKIFC HGGLSPDL S E I+
Sbjct: 121 ASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPVAAIIDEKIFCMHGGLSPDLQSMEQIR 180
Query: 258 RIPRPTDVPDQGLLCDLLWSDPDNNILDWGDNDRGVSYTFGPNVVKTFLDKHHMDLICRA 317
RI RPTDVPDQGLLCDLLWSDPD ++ WG+NDRGVS+TFG +VV FL+KH +DLICRA
Sbjct: 181 RIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGKDVVAKFLNKHDLDLICRA 240
Query: 318 HQVVEEGYEFFADKKLVTLFSAPNYCGEFDNAGAMMSVDQNLMCSFQILKPTE 370
HQVVE+GYEFFA ++LVTLFSAPNYCGEFDNAGAMMSVD+ LMCSFQILKP E
Sbjct: 241 HQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAE 293
>gnl|CDD|185658 PTZ00480, PTZ00480, serine/threonine-protein phosphatase;
Provisional.
Length = 320
Score = 485 bits (1250), Expect = e-173
Identities = 214/300 (71%), Positives = 256/300 (85%)
Query: 78 DLDLIIQKLLDLRGTRQRRNVRLEEKEIVSLIQISRKIFMSQPMLLELEPPLKICGDVHG 137
D+D II++LL +RG++ +NV L E E+ L +R IF+SQP+LLELE PLKICGDVHG
Sbjct: 10 DVDNIIERLLSVRGSKPGKNVNLTEAEVRGLCIKARDIFISQPILLELEAPLKICGDVHG 69
Query: 138 QYTDLLRLFDHGKFPPASNYLFLGDYVDRGKQSLETICLLLAYKIKHPETFFLLRGNHES 197
QY DLLRLF++G +PP SNYLFLGDYVDRGKQSLETICLLLAYKIK+PE FFLLRGNHE
Sbjct: 70 QYFDLLRLFEYGGYPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHEC 129
Query: 198 ANINRIYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPDLDSFEDIK 257
A+INRIYGFYDECKRRY +KLWKTFT+CFNC+PVAA++DEKI C HGGLSP+L + E I+
Sbjct: 130 ASINRIYGFYDECKRRYTIKLWKTFTDCFNCLPVAALIDEKILCMHGGLSPELSNLEQIR 189
Query: 258 RIPRPTDVPDQGLLCDLLWSDPDNNILDWGDNDRGVSYTFGPNVVKTFLDKHHMDLICRA 317
RI RPTDVPD GLLCDLLWSDPD ++ W DN+RGVSY F +V+ FL KH +DLICRA
Sbjct: 190 RIMRPTDVPDTGLLCDLLWSDPDKDVQGWADNERGVSYVFSQEIVQVFLKKHELDLICRA 249
Query: 318 HQVVEEGYEFFADKKLVTLFSAPNYCGEFDNAGAMMSVDQNLMCSFQILKPTERNRAGPK 377
HQVVE+GYEFF+ ++LVTLFSAPNYCGEFDNAG+MM++D++LMCSFQILKP E+ + +
Sbjct: 250 HQVVEDGYEFFSKRQLVTLFSAPNYCGEFDNAGSMMTIDESLMCSFQILKPAEQGQGASQ 309
>gnl|CDD|197547 smart00156, PP2Ac, Protein phosphatase 2A homologues, catalytic
domain. Large family of serine/threonine phosphatases,
that includes PP1, PP2A and PP2B (calcineurin) family
members.
Length = 271
Score = 423 bits (1091), Expect = e-150
Identities = 145/269 (53%), Positives = 199/269 (73%)
Query: 102 EKEIVSLIQISRKIFMSQPMLLELEPPLKICGDVHGQYTDLLRLFDHGKFPPASNYLFLG 161
++EI+ L++ ++IF +P L+E+ P+ +CGD+HGQ+ DLLRLFD PP +NY+FLG
Sbjct: 3 KEEILELLREVKEIFRQEPNLVEVSAPVTVCGDIHGQFDDLLRLFDKNGQPPETNYVFLG 62
Query: 162 DYVDRGKQSLETICLLLAYKIKHPETFFLLRGNHESANINRIYGFYDECKRRYNVKLWKT 221
DYVDRG S+E I LL A KI +P LLRGNHES ++N IYGFYDECKR+Y ++++
Sbjct: 63 DYVDRGPFSIEVILLLFALKILYPNRIVLLRGNHESRSMNEIYGFYDECKRKYGERIYEK 122
Query: 222 FTECFNCMPVAAIVDEKIFCCHGGLSPDLDSFEDIKRIPRPTDVPDQGLLCDLLWSDPDN 281
F E F+ +P+AA+++ KI C HGGLSPDL + +DI+++ RP + PD GLL DLLWSDPD
Sbjct: 123 FNEAFSWLPLAALINGKILCMHGGLSPDLTTLDDIRKLKRPQEPPDDGLLIDLLWSDPDQ 182
Query: 282 NILDWGDNDRGVSYTFGPNVVKTFLDKHHMDLICRAHQVVEEGYEFFADKKLVTLFSAPN 341
+ +G + RG SY FGP+ V FL K+++ LI RAHQVV++GYEFFAD KLVT+FSAPN
Sbjct: 183 PVNGFGPSIRGASYIFGPDAVDEFLKKNNLKLIIRAHQVVDDGYEFFADGKLVTIFSAPN 242
Query: 342 YCGEFDNAGAMMSVDQNLMCSFQILKPTE 370
YC F N A++ VD++L +F+ KP +
Sbjct: 243 YCDRFGNKAAVLKVDKDLKLTFEQFKPGK 271
>gnl|CDD|140271 PTZ00244, PTZ00244, serine/threonine-protein phosphatase PP1;
Provisional.
Length = 294
Score = 406 bits (1044), Expect = e-142
Identities = 170/285 (59%), Positives = 222/285 (77%)
Query: 82 IIQKLLDLRGTRQRRNVRLEEKEIVSLIQISRKIFMSQPMLLELEPPLKICGDVHGQYTD 141
+I+K+L ++G R +R + + E++I +++ R+IFMSQPMLLE+ PP+++CGD HGQY D
Sbjct: 7 LIEKMLTVKGNRTQRQILIREEDIRAVLTEVREIFMSQPMLLEIRPPVRVCGDTHGQYYD 66
Query: 142 LLRLFDHGKFPPASNYLFLGDYVDRGKQSLETICLLLAYKIKHPETFFLLRGNHESANIN 201
LLR+F+ FPP SNYLFLGDYVDRGK S+ETI L YKI +PE FFLLRGNHE A+IN
Sbjct: 67 LLRIFEKCGFPPYSNYLFLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECASIN 126
Query: 202 RIYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPDLDSFEDIKRIPR 261
++YGF+D+ KRRYN+KL+K FT+ FN MPV ++ EKI C HGGLSPDL S + I R
Sbjct: 127 KMYGFFDDVKRRYNIKLFKAFTDVFNTMPVCCVISEKIICMHGGLSPDLTSLASVNEIER 186
Query: 262 PTDVPDQGLLCDLLWSDPDNNILDWGDNDRGVSYTFGPNVVKTFLDKHHMDLICRAHQVV 321
P DVPD+G+LCDLLW+DP++ + + ++DRGVSY FG ++V FLD MDLI RAHQV+
Sbjct: 187 PCDVPDRGILCDLLWADPEDEVRGFLESDRGVSYLFGEDIVNDFLDMVDMDLIVRAHQVM 246
Query: 322 EEGYEFFADKKLVTLFSAPNYCGEFDNAGAMMSVDQNLMCSFQIL 366
E GY FFA ++LVT+FSAPNYCGEFDN A+M++D L CSF I+
Sbjct: 247 ERGYGFFASRQLVTVFSAPNYCGEFDNDAAVMNIDDKLQCSFLII 291
>gnl|CDD|163658 cd07415, MPP_PP2A_PP4_PP6, PP2A, PP4, and PP6 phosphoprotein
phosphatases, metallophosphatase domain. PP2A-like
family of phosphoprotein phosphatases (PPP's) including
PP4 and PP6. PP2A (Protein phosphatase 2A) is a
critical regulator of many cellular activities. PP2A
comprises about 1% of total cellular proteins. PP2A,
together with protein phosphatase 1 (PP1), accounts for
more than 90% of all serine/threonine phosphatase
activities in most cells and tissues. The PP2A subunit
in addition to having a catalytic domain homologous to
PP1, has a unique C-terminal tail, containing a motif
that is conserved in the catalytic subunits of all
PP2A-like phosphatases including PP4 and PP6, and has an
important role in PP2A regulation. The PP2A-like family
of phosphatases all share a similar heterotrimeric
architecture, that includes: a 65kDa scaffolding subunit
(A), a 36kDa catalytic subunit (C), and one of 18
regulatory subunits (B). The PPP (phosphoprotein
phosphatase) family, to which PP2A belongs, is one of
two known protein phosphatase families specific for
serine and threonine. The PPP family also includes:
PP1, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC,
PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic
domain is defined by three conserved motifs (-GDXHG-,
-GDXVDRG- and -GNHE-). The PPP enzyme family is ancient
with members found in all eukaryotes, and in most
bacterial and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 285
Score = 355 bits (914), Expect = e-123
Identities = 138/292 (47%), Positives = 198/292 (67%), Gaps = 10/292 (3%)
Query: 78 DLDLIIQKLLDLRGTRQRRNVRLEEKEIVSLIQISRKIFMSQPMLLELEPPLKICGDVHG 137
DLD I++L ++ L E E+ SL + +++I + + + + P+ +CGD+HG
Sbjct: 1 DLDKWIEQL--------KKCELLPESEVKSLCEKAKEILVKESNVQRVRSPVTVCGDIHG 52
Query: 138 QYTDLLRLFDHGKFPPASNYLFLGDYVDRGKQSLETICLLLAYKIKHPETFFLLRGNHES 197
Q+ DLL LF G PP +NYLFLGDYVDRG S+ET LLLA K+++P+ LLRGNHES
Sbjct: 53 QFYDLLELFRVGGDPPDTNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHES 112
Query: 198 ANINRIYGFYDECKRRY-NVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPDLDSFEDI 256
I ++YGFYDEC R+Y N +WK T+ F+ +P+AA++D +IFC HGGLSP +D+ + I
Sbjct: 113 RQITQVYGFYDECLRKYGNANVWKYCTDLFDYLPLAALIDNQIFCVHGGLSPSIDTLDQI 172
Query: 257 KRIPRPTDVPDQGLLCDLLWSDPDNNILDWGDNDRGVSYTFGPNVVKTFLDKHHMDLICR 316
+ I R +VP +G +CDLLWSDPD +I WG + RG Y FG +VV+ F + + LICR
Sbjct: 173 RAIDRFQEVPHEGPMCDLLWSDPD-DIEGWGISPRGAGYLFGQDVVEEFNHNNGLTLICR 231
Query: 317 AHQVVEEGYEFFADKKLVTLFSAPNYCGEFDNAGAMMSVDQNLMCSFQILKP 368
AHQ+V EGY++ D KLVT++SAPNYC N ++M +D++L SF++ +
Sbjct: 232 AHQLVMEGYQWMFDDKLVTVWSAPNYCYRCGNVASIMELDEHLKRSFKVFEA 283
>gnl|CDD|173488 PTZ00239, PTZ00239, serine/threonine protein phosphatase 2A;
Provisional.
Length = 303
Score = 281 bits (720), Expect = 3e-93
Identities = 125/309 (40%), Positives = 193/309 (62%), Gaps = 15/309 (4%)
Query: 78 DLDLIIQKLLDLRGTRQRRNVRLEEKEIVSLIQISRKIFMSQPMLLELEPPLKICGDVHG 137
D+D I LL+ G R+++L + + +++IF+ + + + P+ +CGD+HG
Sbjct: 2 DIDRHIATLLN-GGCLPERDLKL-------ICERAKEIFLEESNVQPVRAPVNVCGDIHG 53
Query: 138 QYTDLLRLFDHGKFPPASNYLFLGDYVDRGKQSLETICLLLAYKIKHPETFFLLRGNHES 197
Q+ DL LF G P +NY+F+GD+VDRG S+ET+ LL K+K+P LLRGNHES
Sbjct: 54 QFYDLQALFKEGGDIPNANYIFIGDFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHES 113
Query: 198 ANINRIYGFYDECKRRY-NVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPDLDSFEDI 256
++YGFY+E R+Y N W+ F + F+C+P+AA+++ +I C HGGLSPD+ + + I
Sbjct: 114 RQCTQVYGFYEEILRKYGNSNPWRLFMDVFDCLPLAALIEGQILCVHGGLSPDMRTIDQI 173
Query: 257 KRIPRPTDVPDQGLLCDLLWSDPDNNILDWGDNDRGVSYTFGPNVVKTFLDKHHMDLICR 316
+ I R ++P +G CDL+WSDP+ + W N RG Y FG V K F + + LICR
Sbjct: 174 RTIDRKIEIPHEGPFCDLMWSDPE-EVEYWAVNSRGAGYLFGAKVTKEFCRLNDLTLICR 232
Query: 317 AHQVVEEGYEF-FADKKLVTLFSAPNYCGEFDNAGAMMSVDQNLMCSFQILKP-TERNRA 374
AHQ+V EGY++ F D+ LVT++SAPNYC N +++ +D+NL +++ K E ++
Sbjct: 233 AHQLVMEGYKYWFPDQNLVTVWSAPNYCYRCGNIASILCLDENLQQTWKTFKEVPESAKS 292
Query: 375 GPKAIPRNV 383
P+NV
Sbjct: 293 IN---PKNV 298
>gnl|CDD|163662 cd07419, MPP_Bsu1_C, Arabidopsis thaliana Bsu1 phosphatase and
related proteins, C-terminal metallophosphatase domain.
Bsu1 encodes a nuclear serine-threonine protein
phosphatase found in plants and protozoans. Bsu1 has a
C-terminal phosphatase domain and an N-terminal
Kelch-repeat domain. Bsu1 is preferentially expressed
in elongating plant cells. It modulates the
phosphorylation state of Bes1, a transcriptional
regulator phosphorylated by the glycogen synthase kinase
Bin2, as part of a steroid hormone signal transduction
pathway. The PPP (phosphoprotein phosphatase) family,
to which Bsu1 belongs, is one of two known protein
phosphatase families specific for serine and threonine.
The PPP family also includes: PP1, PP2A, PP2B
(calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE,
PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain
is defined by three conserved motifs (-GDXHG-, -GDXVDRG-
and -GNHE-). The PPP enzyme family is ancient with
members found in all eukaryotes, and in most bacterial
and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 311
Score = 276 bits (708), Expect = 2e-91
Identities = 126/302 (41%), Positives = 177/302 (58%), Gaps = 24/302 (7%)
Query: 82 IIQKLLDLRGTRQRRNVR--LEEKEIVSLIQISRKIFMSQPMLLELEPPLKICGDVHGQY 139
II LL R + + R EI+ L + IF +PM+L L P+KI GD+HGQ+
Sbjct: 1 IITHLLKPRIWKPPTDRRFFFNWNEILELCDAAEDIFKQEPMVLRLRAPIKIFGDIHGQF 60
Query: 140 TDLLRLFDHGKFPPAS--------NYLFLGDYVDRGKQSLETICLLLAYKIKHPETFFLL 191
DL+RLFD P +YLFLGDYVDRG SLETICLLLA K+K+P L+
Sbjct: 61 GDLMRLFDEYGSPVTEAAGDIEYIDYLFLGDYVDRGSNSLETICLLLALKVKYPNQIHLI 120
Query: 192 RGNHESANINRIYGFYDECKRRYN------VKLWKTFTECFNCMPVAAIVDEKIFCCHGG 245
RGNHE +IN ++GF +ECK R +W+ F +P+AAI+++KI C HGG
Sbjct: 121 RGNHEDRDINALFGFREECKERLGEDPNDGDSVWRRINRLFEWLPLAAIIEDKILCMHGG 180
Query: 246 LSPDLDSFEDIKRIPRP-TDVPDQGLLCDLLWSDPDNN--ILDWGDNDR-----GVSYTF 297
+ ++ +I+ + RP T + ++ DLLWSDP N +L N G+ F
Sbjct: 181 IGRSINHVSEIEDLKRPLTMEFGEQVVMDLLWSDPTENDSVLGLRPNAIDPRGPGLIVKF 240
Query: 298 GPNVVKTFLDKHHMDLICRAHQVVEEGYEFFADKKLVTLFSAPNYCGEFDNAGAMMSVDQ 357
GP+ V FL+++ + +I RAH+ V +G+E FA KL+TLFSA NYCG NAGA++ + +
Sbjct: 241 GPDRVHRFLEENDLQMIIRAHECVMDGFERFAQGKLITLFSATNYCGTAGNAGAILVLGR 300
Query: 358 NL 359
+L
Sbjct: 301 DL 302
>gnl|CDD|163659 cd07416, MPP_PP2B, PP2B, metallophosphatase domain. PP2B
(calcineurin) is a unique serine/threonine protein
phosphatase in its regulation by a second messenger
(calcium and calmodulin). PP2B is involved in many
biological processes including immune responses, the
second messenger cAMP pathway, sodium/potassium ion
transport in the nephron, cell cycle progression in
lower eukaryotes, cardiac hypertrophy, and memory
formation. PP2B is highly conserved from yeast to
humans, but is absent from plants. PP2B is a
heterodimer consisting of a catalytic subunit (CnA) and
a regulatory subunit (CnB); CnB contains four Ca2+
binding motifs referred to as EF hands. The PPP
(phosphoprotein phosphatase) family, to which PP2B
belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP4, PP5, PP6, PP7,
Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 305
Score = 276 bits (708), Expect = 3e-91
Identities = 112/298 (37%), Positives = 175/298 (58%), Gaps = 21/298 (7%)
Query: 77 PDLDLIIQKLLDLRGTRQRRNVRLEEKEIVSLIQISRKIFMSQPMLLELEPPLKICGDVH 136
P +D++ R RL E++ + +I +I +P LL +E P+ +CGD+H
Sbjct: 1 PRIDVLKAHF--------MREGRLSEEDALRIITEGAEILRQEPNLLRIEAPVTVCGDIH 52
Query: 137 GQYTDLLRLFDHGKFPPASNYLFLGDYVDRGKQSLETICLLLAYKIKHPETFFLLRGNHE 196
GQ+ DLL+LF+ G P + YLFLGDYVDRG S+E + L A KI +P+T FLLRGNHE
Sbjct: 53 GQFYDLLKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHE 112
Query: 197 SANINRIYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPDLDSFEDI 256
++ + F ECK +Y+ +++ E F+C+P+AA+++++ C HGGLSP+L + +DI
Sbjct: 113 CRHLTEYFTFKQECKIKYSERVYDACMEAFDCLPLAALMNQQFLCVHGGLSPELKTLDDI 172
Query: 257 KRIPRPTDVPDQGLLCDLLWSDP------DNNILDWGDND-RGVSYTFGPNVVKTFLDKH 309
+++ R + P G +CDLLWSDP + + N RG SY + V FL K+
Sbjct: 173 RKLDRFREPPAFGPMCDLLWSDPLEDFGNEKTQEHFVHNTVRGCSYFYSYRAVCEFLQKN 232
Query: 310 HMDLICRAHQVVEEGYEFFADKK------LVTLFSAPNYCGEFDNAGAMMSVDQNLMC 361
++ I RAH+ + GY + + L+T+FSAPNY ++N A++ + N+M
Sbjct: 233 NLLSIIRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVMN 290
>gnl|CDD|163660 cd07417, MPP_PP5_C, PP5, C-terminal metallophosphatase domain.
Serine/threonine protein phosphatase-5 (PP5) is a member
of the PPP gene family of protein phosphatases that is
highly conserved among eukaryotes and widely expressed
in mammalian tissues. PP5 has a C-terminal phosphatase
domain and an extended N-terminal TPR (tetratricopeptide
repeat) domain containing three TPR motifs. The PPP
(phosphoprotein phosphatase) family, to which PP5
belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 316
Score = 270 bits (692), Expect = 8e-89
Identities = 109/261 (41%), Positives = 166/261 (63%), Gaps = 12/261 (4%)
Query: 108 LIQISRKIFMSQPMLLELEPP----LKICGDVHGQYTDLLRLFDHGKFPPASN-YLFLGD 162
L+Q+ +++ P L+E+ P + +CGD HGQ+ DLL +F+ P +N YLF GD
Sbjct: 38 LLQV-KELLKKLPSLVEITIPEGEKITVCGDTHGQFYDLLNIFELNGLPSETNPYLFNGD 96
Query: 163 YVDRGKQSLETICLLLAYKIKHPETFFLLRGNHESANINRIYGFYDECKRRYNVKLWKTF 222
+VDRG S+E I L A+K+ +P F L RGNHE+ N+N++YGF E K +YN +++ F
Sbjct: 97 FVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETDNMNKMYGFEGEVKAKYNEQMFDLF 156
Query: 223 TECFNCMPVAAIVDEKIFCCHGGL-SPDLDSFEDIKRIPRPTDVPDQGLLCDLLWSDPD- 280
+E FN +P+A +++ K+ HGGL S D + +DI++I R PD GL+C+LLWSDP
Sbjct: 157 SEVFNWLPLAHLINGKVLVVHGGLFSDDGVTLDDIRKIDRFRQPPDSGLMCELLWSDPQP 216
Query: 281 -NNILDWGDNDRGVSYTFGPNVVKTFLDKHHMDLICRAHQVVEEGYEFFADKKLVTLFSA 339
+ RGV FGP+V K FL++++++ I R+H+V +EGYE D K +T+FSA
Sbjct: 217 QPGR---SPSKRGVGCQFGPDVTKRFLEENNLEYIIRSHEVKDEGYEVEHDGKCITVFSA 273
Query: 340 PNYCGEFDNAGAMMSVDQNLM 360
PNYC + N GA + + + +
Sbjct: 274 PNYCDQMGNKGAFIRITGSDL 294
>gnl|CDD|163613 cd00144, MPP_PPP_family, phosphoprotein phosphatases of the
metallophosphatase superfamily, metallophosphatase
domain. The PPP (phosphoprotein phosphatase) family is
one of two known protein phosphatase families specific
for serine and threonine. This family includes: PP1,
PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1,
RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 225
Score = 243 bits (621), Expect = 2e-79
Identities = 103/235 (43%), Positives = 134/235 (57%), Gaps = 21/235 (8%)
Query: 131 ICGDVHGQYTDLLRLFDHGKFPPASNYLFLGDYVDRGKQSLETICLLLAYKIKHPETFFL 190
+ GD+HG DLLRL + FPP +FLGDYVDRG S+E I LLLA KI P+ L
Sbjct: 2 VIGDIHGCLDDLLRLLEKIGFPPNDKLIFLGDYVDRGPDSVEVIDLLLALKIL-PDNVIL 60
Query: 191 LRGNHESANINRIYGFYDE---------CKRRYNVKLWKTFTECFNCMPVAAIVD-EKIF 240
LRGNHE +N +YGFYDE ++ LW+ F + F +P+AA+++ +K+
Sbjct: 61 LRGNHEDMLLNFLYGFYDEDEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKVL 120
Query: 241 CCHGGLSPDLDSFEDIKRIPRPTDVPDQGLLCDLLWSDPDNNILDWGDNDRGVSYTFGPN 300
C HGGLSP L E IK + P+ L DLLWSDP +G + RG GP+
Sbjct: 121 CVHGGLSPGLPLEEQIK------EEPEDQLPEDLLWSDPLELPGGFGSSRRGG----GPD 170
Query: 301 VVKTFLDKHHMDLICRAHQVVEEGYEFFADKKLVTLFSAPNYCGEFDNAGAMMSV 355
V+ FL K+ + LI R H VEEGYEF D L+T+ S NYCG N A + +
Sbjct: 171 AVEWFLKKNGLKLIVRGHTPVEEGYEFGHDGNLITIDSGCNYCGGGGNKLAALVL 225
>gnl|CDD|163663 cd07420, MPP_RdgC, Drosophila melanogaster RdgC and related
proteins, metallophosphatase domain. RdgC (retinal
degeneration C) is a vertebrate serine-threonine protein
phosphatase that is required to prevent light-induced
retinal degeneration. In addition to its catalytic
domain, RdgC has two C-terminal EF hands. Homologs of
RdgC include the human phosphatases protein phosphatase
with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1
transcripts are present at low levels in the retina,
PPEF-2 transcripts and PPEF-2 protein are present at
high levels in photoreceptors. The PPP (phosphoprotein
phosphatase) family, to which RdgC belongs, is one of
two known protein phosphatase families specific for
serine and threonine. The PPP family also includes:
PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1,
PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic
domain is defined by three conserved motifs (-GDXHG-,
-GDXVDRG- and -GNHE-). The PPP enzyme family is ancient
with members found in all eukaryotes, and in most
bacterial and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 321
Score = 181 bits (462), Expect = 2e-54
Identities = 92/263 (34%), Positives = 132/263 (50%), Gaps = 30/263 (11%)
Query: 131 ICGDVHGQYTDLLRLFDHGKFPPASN-YLFLGDYVDRGKQSLETICLLLAYKIKHPETFF 189
ICGD+HG+ DL +F P N Y+F GD+VDRGK+S+E + +L A+ + +P
Sbjct: 55 ICGDLHGKLDDLFLIFYKNGLPSPENPYVFNGDFVDRGKRSIEILIILFAFFLVYPNEVH 114
Query: 190 LLRGNHESANINRIYGFYDECKRRYNV---KLWKTFTECFNCMPVAAIVDEKIFCCHGGL 246
L RGNHE +N YGF E +Y + K+ + + F+ +P+A I+D KI HGG+
Sbjct: 115 LNRGNHEDHIMNLRYGFTKEVMSKYKLHGKKILRLLEDVFSWLPLATIIDNKILVVHGGI 174
Query: 247 S--PDLDSFEDIKR------------------------IPRPTDVPDQGLLCDLLWSDPD 280
S DLD + I R P D + + D+LWSDP
Sbjct: 175 SDSTDLDLLDKIDRHKYVSVLRPPLRKGMEELTGEEEDPSEPLDKTEWRQILDILWSDPK 234
Query: 281 NNILDWGDNDRGVSYTFGPNVVKTFLDKHHMDLICRAHQVVEEGYEFFADKKLVTLFSAP 340
+ RG FGP+V L KH + L+ R+H+ EGYEF + K++T+FSA
Sbjct: 235 AQKGCKPNTFRGGGCYFGPDVTSKVLQKHGLSLLIRSHECKPEGYEFCHNNKVITIFSAS 294
Query: 341 NYCGEFDNAGAMMSVDQNLMCSF 363
NY E N GA + + +L F
Sbjct: 295 NYYEEGSNRGAYIKLGPDLTPHF 317
>gnl|CDD|163661 cd07418, MPP_PP7, PP7, metallophosphatase domain. PP7 is a plant
phosphoprotein phosphatase that is highly expressed in a
subset of stomata and thought to play an important role
in sensory signaling. PP7 acts as a positive regulator
of signaling downstream of cryptochrome blue light
photoreceptors. PP7 also controls amplification of
phytochrome signaling, and interacts with
nucleotidediphosphate kinase 2 (NDPK2), a positive
regulator of phytochrome signalling. In addition, PP7
interacts with heat shock transcription factor HSF and
up-regulates protective heat shock proteins. PP7 may
also play a role in salicylic acid-dependent defense
signaling. The PPP (phosphoprotein phosphatase) family,
to which PP7 belongs, is one of two known protein
phosphatase families specific for serine and threonine.
The PPP family also includes: PP2A, PP2B (calcineurin),
PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 377
Score = 156 bits (397), Expect = 3e-44
Identities = 95/301 (31%), Positives = 143/301 (47%), Gaps = 62/301 (20%)
Query: 100 LEEKEIVSLIQISRKIFMSQPMLLELEPPLKIC-----GDVHGQYTDLLRLFDHGKFPPA 154
L SL+ + KI +P + + +C GDVHGQ D+L L + FP
Sbjct: 35 LPVNVFDSLVLTAHKILHREPNCVRI-DVEDVCEVVVVGDVHGQLHDVLFLLEDAGFPDQ 93
Query: 155 SN-YLFLGDYVDRGKQSLETICLLLAYKIKHPETFFLLRGNHESANINRIYGFYDECKRR 213
+ Y+F GDYVDRG LET LLL++K+ P+ +LLRGNHES +YGF E +
Sbjct: 94 NRFYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESKFCTSMYGFEQEVLTK 153
Query: 214 YN---VKLWKTFTECFNCMPVAAIVDEKIFCCHGGL------------------------ 246
Y +++ CF +P+A+I+ +++ HGGL
Sbjct: 154 YGDKGKHVYRKCLGCFEGLPLASIIAGRVYTAHGGLFRSPSLPKRKKQKGKNRRVLLLEP 213
Query: 247 ---SPDLDSFEDIKRIPRPT-DVPDQGLLC---DLLWSDPDNNILDWG---DNDRGVSYT 296
S L + +D+ + R D P +G D+LWSDP L G + RG+
Sbjct: 214 ESESLKLGTLDDLMKARRSVLDPPGEGSNLIPGDVLWSDP---SLTPGLSPNKQRGIGLL 270
Query: 297 FGPNVVKTFLDKHHMDLICRAHQ------------VVEEGYEFFAD---KKLVTLFSAPN 341
+GP+ + FL+K+++ LI R+H+ + +GY D KL+TLFSAP+
Sbjct: 271 WGPDCTEEFLEKNNLKLIIRSHEGPDAREKRPGLAGMNKGYTVDHDVESGKLITLFSAPD 330
Query: 342 Y 342
Y
Sbjct: 331 Y 331
>gnl|CDD|215750 pfam00149, Metallophos, Calcineurin-like phosphoesterase. This
family includes a diverse range of phosphoesterases,
including protein phosphoserine phosphatases,
nucleotidases, sphingomyelin phosphodiesterases and
2'-3' cAMP phosphodiesterases as well as nucleases such
as bacterial SbcD or yeast MRE11. The most conserved
regions in this superfamily centre around the metal
chelating residues.
Length = 185
Score = 114 bits (286), Expect = 2e-30
Identities = 66/222 (29%), Positives = 88/222 (39%), Gaps = 66/222 (29%)
Query: 128 PLKICGDVHGQYTDL---LRLFDHGKFPPASNYLFLGDYVDRGKQSLETICLLLAYKIKH 184
+ + GD+HG DL L L + P LFLGD VDRG SLE + LL A K+K
Sbjct: 1 RILVIGDLHGGLDDLDLLLLLLELLGEPKPDLVLFLGDLVDRGPPSLEVLALLFALKLKA 60
Query: 185 PETFFLLRGNHESANINRIYGFYDECKRR-------------------------YNVKLW 219
P +L+RGNH+ + N GFY EC +W
Sbjct: 61 PGPVYLVRGNHDFDSGNSELGFYLECAGLPYVLGNGDVSNGTVEIIGLSSLYGKGGGLVW 120
Query: 220 KTFTECFNCMPVAAIVDEKIFCCHGGLSPDLDSFEDIKRIPRPTDVPDQGLLCDLLWSDP 279
+ F E + + +AA+VD KI HG LSP LDS +DI
Sbjct: 121 EEFLELLDLLLLAALVDGKILLVHGPLSPSLDSGDDI----------------------- 157
Query: 280 DNNILDWGDNDRGVSYTFGPNVVKTFLDKHHMDLICRAHQVV 321
Y FG ++ L + +DL+ R H V
Sbjct: 158 ---------------YLFGEEALEDLLKDNGVDLVLRGHTHV 184
>gnl|CDD|223712 COG0639, ApaH, Diadenosine tetraphosphatase and related
serine/threonine protein phosphatases [Signal
transduction mechanisms].
Length = 155
Score = 112 bits (281), Expect = 5e-30
Identities = 59/156 (37%), Positives = 77/156 (49%), Gaps = 10/156 (6%)
Query: 198 ANINRIYGFYDECKRRYNVKL-WKT---FTECFNCMPVAAIVDE-KIFCCHGGLSPDLDS 252
+ +YGFYDE R+Y +L W E F+ +P+AA+ + K+ C HGGLSP LD
Sbjct: 1 MLLTALYGFYDEKLRKYGEELEWLRAAGGLETFDSLPLAAVAEGGKLLCHHGGLSPGLDR 60
Query: 253 F-EDIKRIPRPT--DVPDQGLLCDLLWSDPDNN-ILDWGDNDRGVSYTFGPNVVKTFLDK 308
+ I+ + R +VP G DLLWSDPD W RGV +V F
Sbjct: 61 LLDIIEVLDRLRACEVPHAGHTHDLLWSDPDGGDRRIWNPGPRGVPRDG-GDVTAVFGIV 119
Query: 309 HHMDLICRAHQVVEEGYEFFADKKLVTLFSAPNYCG 344
H LI RAH + + L+T FSAPNYC
Sbjct: 120 HTPKLIERAHVLYDIDTGAVFGGGLLTAFSAPNYCY 155
>gnl|CDD|163667 cd07424, MPP_PrpA_PrpB, PrpA and PrpB, metallophosphatase domain.
PrpA and PrpB are bacterial type I serine/threonine and
tyrosine phosphatases thought to modulate the expression
of proteins that protect the cell upon accumulation of
misfolded proteins in the periplasm. The PPP
(phosphoprotein phosphatase) family, to which PrpA and
PrpB belong, is one of two known protein phosphatase
families specific for serine and threonine. This family
also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5,
PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 207
Score = 57.7 bits (140), Expect = 8e-10
Identities = 43/162 (26%), Positives = 66/162 (40%), Gaps = 27/162 (16%)
Query: 131 ICGDVHGQYTDLLRLFDHGKFPPASNYLF-LGDYVDRGKQSLETICLLLAYKIKHPETFF 189
+ GD+HG Y+ L + D F PA + L +GD +DRG +SL + LLL P F
Sbjct: 5 VVGDIHGHYSLLQKALDAVGFDPARDRLISVGDLIDRGPESLACLELLLE-----P-WFH 58
Query: 190 LLRGNHESANINRI-YGFYDECKRRYNVKLW----------KTFTECFNCMPVAAIV--- 235
+RGNHE I+ + D + N W + +P+A V
Sbjct: 59 AVRGNHEQMAIDALRAEPLDAVRWLANGGEWFLDLPDEELRRWLALKLEQLPLAIEVETE 118
Query: 236 DEKIFCCHGGLSPDLDSFEDIKRIPRPTDVPDQGLLCDLLWS 277
K+ H P D + + + + ++ LLWS
Sbjct: 119 GGKVGIVHAD-YPSDDWSDGVGAVTLRPEDIEE-----LLWS 154
>gnl|CDD|163656 cd07413, MPP_PA3087, Pseudomonas aeruginosa PA3087 and related
proteins, metallophosphatase domain. PA3087 is an
uncharacterized protein from Pseudomonas aeruginosa with
a metallophosphatase domain that belongs to the
phosphoprotein phosphatase (PPP) family. The PPP family
also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5,
PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 222
Score = 50.7 bits (122), Expect = 2e-07
Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 31/130 (23%)
Query: 131 ICGDVHGQYTDLLRLFDH-------GKFP-PASNYLFLGDYVDRGKQSLETI-------- 174
GD+HG L+ L G + P +FLGD +DRG + E +
Sbjct: 3 FIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVD 62
Query: 175 -----CLL-------LAYKIKHPETFFLLRGNHESANINRIYGFYDECKRRYNVKLWKTF 222
++ +A+ K P LR H N+ + F ++ R + + K +
Sbjct: 63 AGHALAVMGNHEFNAIAWHTKDPSGGEWLR-AHSKKNLRQHQAFLEQF--REHSEEHKDW 119
Query: 223 TECFNCMPVA 232
E F +P+
Sbjct: 120 LEWFKTLPLF 129
>gnl|CDD|234673 PRK00166, apaH, diadenosine tetraphosphatase; Reviewed.
Length = 275
Score = 50.9 bits (123), Expect = 3e-07
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 133 GDVHGQYTDLLRLFDHGKFPPASNYL-FLGDYVDRGKQSLETICLLLAYKIKHPETFFLL 191
GD+ G Y +L RL + F PA + L +GD V+RG SLE L + ++ +
Sbjct: 7 GDIQGCYDELQRLLEKIDFDPAKDTLWLVGDLVNRGPDSLEV----LRFVKSLGDSAVTV 62
Query: 192 RGNHE 196
GNH+
Sbjct: 63 LGNHD 67
>gnl|CDD|163665 cd07422, MPP_ApaH, Escherichia coli ApaH and related proteins,
metallophosphatase domain. ApaH (also known as
symmetrically cleaving Ap4A hydrolase and
bis(5'nucleosyl)-tetraphosphatase) is a bacterial member
of the PPP (phosphoprotein phosphatase) family of
serine/threonine phosphatases that hydrolyzes the
nucleotide-signaling molecule diadenosine tetraphosphate
(Ap(4)A) into two ADP and also hydrolyzes Ap(5)A,
Gp(4)G, and other extending compounds. Null mutations
in apaH result in high intracellular levels of Ap(4)A
which correlate with multiple phenotypes, including a
decreased expression of catabolite-repressible genes, a
reduction in the expression of flagellar operons, and an
increased sensitivity to UV and heat. Ap4A hydrolase
is important in responding to heat shock and oxidative
stress via regulating the concentration of Ap4A in
bacteria. Ap4A hydrolase is also thought to play a role
in siderophore production, but the mechanism by which
ApaH interacts with siderophore pathways in unknown.
The PPP (phosphoprotein phosphatase) family, to which
ApaH belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and PrpA/PrpB. The
PPP catalytic domain is defined by three conserved
motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme
family is ancient with members found in all eukaryotes,
and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 257
Score = 49.8 bits (120), Expect = 6e-07
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 133 GDVHGQYTDLLRLFDHGKFPPASNYL-FLGDYVDRGKQSLETICLLLAYKIKHPETFFLL 191
GD+ G Y +L RL + F PA + L +GD V+RG SLET L + ++ +
Sbjct: 5 GDIQGCYDELQRLLEKINFDPAKDRLWLVGDLVNRGPDSLET----LRFVKSLGDSAKTV 60
Query: 192 RGNHE 196
GNH+
Sbjct: 61 LGNHD 65
>gnl|CDD|163668 cd07425, MPP_Shelphs, Shewanella-like phosphatases,
metallophosphatase domain. This family includes
bacterial, eukaryotic, and archeal proteins orthologous
to the Shewanella cold-active protein-tyrosine
phosphatase, CAPTPase. CAPTPase is an uncharacterized
protein that belongs to the Shelph (Shewanella-like
phosphatase) family of PPP (phosphoprotein
phosphatases). The PPP family is one of two known
protein phosphatase families specific for serine and
threonine. In addition to Shelps, the PPP family also
includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6,
PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase.
The PPP catalytic domain is defined by three conserved
motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme
family is ancient with members found in all eukaryotes,
and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 208
Score = 49.2 bits (118), Expect = 7e-07
Identities = 42/145 (28%), Positives = 55/145 (37%), Gaps = 38/145 (26%)
Query: 133 GDVHGQYTDLLRLF----------DHGKFPPASNYLF-LGDYVDRGKQSLETICLLLAYK 181
GD+HG D R DH S +L LGD DRG +E + LL YK
Sbjct: 4 GDLHGDL-DAFREILKGAGVIDSNDHWIG--GSTHLVQLGDIFDRGPDVIEILWLL--YK 58
Query: 182 IKHPE------TFFLLRGNHESANINRIY---------GFYDECKRRYNVKLWKTFTECF 226
++ E L GNHE N+ + F RR +L+ E
Sbjct: 59 LE-QEAAKAGGKVHFLLGNHELMNLCGDFRYVHPKYFNEFGGLAMRRR--ELFSPGGELG 115
Query: 227 N---CMPVAAIVDEKIFCCHGGLSP 248
PV V++ +F HGGL P
Sbjct: 116 RWLRSKPVIVKVNDTLF-VHGGLGP 139
>gnl|CDD|163614 cd00838, MPP_superfamily, metallophosphatase superfamily,
metallophosphatase domain. Metallophosphatases (MPPs),
also known as metallophosphoesterases,
phosphodiesterases (PDEs), binuclear
metallophosphoesterases, and dimetal-containing
phosphoesterases (DMPs), represent a diverse superfamily
of enzymes with a conserved domain containing an active
site consisting of two metal ions (usually manganese,
iron, or zinc) coordinated with octahedral geometry by a
cage of histidine, aspartate, and asparagine residues.
This superfamily includes: the phosphoprotein
phosphatases (PPPs), Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 131
Score = 47.3 bits (112), Expect = 9e-07
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 131 ICGDVHGQYTDLLRLFDHG--KFPPASNYLFLGDYVDRGKQSLETICLLLAYKIKHPETF 188
+ D+HG L + + L LGD V G E + LA +
Sbjct: 2 VISDIHGNLEALEAVLEAALAAAEKPDFVLVLGDLVGDGPDPEEVLAAALALLLLLGIPV 61
Query: 189 FLLRGNHE 196
+++ GNH+
Sbjct: 62 YVVPGNHD 69
>gnl|CDD|107154 PHA02239, PHA02239, putative protein phosphatase.
Length = 235
Score = 46.9 bits (111), Expect = 6e-06
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
Query: 134 DVHGQYTDLLRLFDH--GKFPPASNYLFLGDYVDRGKQSLETICLLLAYKIKHPETFFLL 191
D+HG+Y LL + D + P +FLGDYVDRGK+S + + + + + + L
Sbjct: 8 DIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFDL-MSNDDNVVTL 66
Query: 192 RGNHES------ANINRIYGFYD-ECKRRY 214
GNH+ N++R+ YD E RY
Sbjct: 67 LGNHDDEFYNIMENVDRL-SIYDIEWLSRY 95
>gnl|CDD|163664 cd07421, MPP_Rhilphs, Rhilph phosphatases, metallophosphatase
domain. Rhilphs (Rhizobiales/ Rhodobacterales/
Rhodospirillaceae-like phosphatases) are a
phylogenetically distinct group of PPP (phosphoprotein
phosphatases), found only in land plants. They are named
for their close relationship to to PPP phosphatases from
alpha-Proteobacteria, including Rhizobiales,
Rhodobacterales and Rhodospirillaceae. The PPP
(phosphoprotein phosphatase) family, to which the
Rhilphs belong, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and
ApA4 hydrolase. The PPP catalytic domain is defined by
three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-).
The PPP enzyme family is ancient with members found in
all eukaryotes, and in most bacterial and archeal
genomes. Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 304
Score = 46.7 bits (111), Expect = 8e-06
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 127 PPLKIC-GDVHGQYTDLLRLFDH--GKFPP----ASNYLFLGDYVDRGKQSLETICLLLA 179
P + IC GD+HG + L L+ + P ++ +FLGDY DRG ++ + I L++
Sbjct: 1 PRVVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLIS 60
Query: 180 YKIKHP-ETFFLLRGNHESA 198
KHP + L GNH+ A
Sbjct: 61 LPEKHPKQRHVFLCGNHDFA 80
>gnl|CDD|236911 PRK11439, pphA, serine/threonine protein phosphatase 1;
Provisional.
Length = 218
Score = 44.0 bits (104), Expect = 4e-05
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 131 ICGDVHGQYTDLLRLFDHGKFPPASNYLF-LGDYVDRGKQSLETICLLLAYKIKHPETFF 189
+ GD+HG + L+R H +F P + L +GD +DRG QSL + LL
Sbjct: 21 LVGDIHGCFEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLRCLQLL------EEHWVR 74
Query: 190 LLRGNHE 196
+RGNHE
Sbjct: 75 AVRGNHE 81
>gnl|CDD|182173 PRK09968, PRK09968, serine/threonine-specific protein phosphatase
2; Provisional.
Length = 218
Score = 42.2 bits (99), Expect = 2e-04
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 133 GDVHGQYTDLLRLFDHGKFPPASNYLF-LGDYVDRGKQSLETICLLLAYKIKHPETFFLL 191
GD+HG+Y L F P ++ L +GD +DRG +SL + LL + F +
Sbjct: 21 GDIHGEYQLLQSRLHQLSFCPETDLLISVGDNIDRGPESLNVLRLL------NQPWFISV 74
Query: 192 RGNHES 197
+GNHE+
Sbjct: 75 KGNHEA 80
>gnl|CDD|233082 TIGR00668, apaH, bis(5'-nucleosyl)-tetraphosphatase (symmetrical).
Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a
regulatory metabolite of stress conditions. It is
hydrolyzed to two ADP by this enzyme. Alternate names
include diadenosine-tetraphosphatase and Ap4A hydrolase
[Cellular processes, Adaptations to atypical
conditions].
Length = 279
Score = 42.2 bits (99), Expect = 3e-04
Identities = 35/127 (27%), Positives = 50/127 (39%), Gaps = 13/127 (10%)
Query: 133 GDVHGQYTDLLRLFDHGKFPPASNYLFL-GDYVDRGKQSLETICLLLAYKIKHPETFFLL 191
GD+HG Y +L L + +F P + L+L GD V RG SLE L + + L+
Sbjct: 7 GDLHGCYDELQALLERVEFDPGQDTLWLTGDLVARGPGSLE--VLRYVKSLG--DAVRLV 62
Query: 192 RGNHE------SANINRIYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFC-CHG 244
GNH+ A I+R D P+ +EK H
Sbjct: 63 LGNHDLHLLAVFAGISRNKP-KDRLDPLLEAPDADELLNWLRRQPLLQHDEEKKLVMAHA 121
Query: 245 GLSPDLD 251
G++P D
Sbjct: 122 GITPQWD 128
>gnl|CDD|163666 cd07423, MPP_PrpE, Bacillus subtilis PrpE and related proteins,
metallophosphatase domain. PrpE (protein phosphatase E)
is a bacterial member of the PPP (phosphoprotein
phosphatase) family of serine/threonine phosphatases and
a key signal transduction pathway component controlling
the expression of spore germination receptors GerA and
GerK in Bacillus subtilis. PrpE is closely related to
ApaH (also known symmetrical Ap(4)A hydrolase and
bis(5'nucleosyl)-tetraphosphatase). PrpE has
specificity for phosphotyrosine only, unlike the
serine/threonine phosphatases to which it is related.
The Bacilli members of this family are single domain
proteins while the other members have N- and C-terminal
domains in addition to this phosphatase domain. The PPP
(phosphoprotein phosphatase) family, to which PrpE
belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 234
Score = 40.7 bits (96), Expect = 5e-04
Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 12/79 (15%)
Query: 128 PLKICGDVHGQYTDLLRLFDH----------GKFPPASNYLFLGDYVDRGKQSLETICLL 177
P I GDVHG Y +L L + P +F+GD VDRG S E L
Sbjct: 2 PFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEV--LR 59
Query: 178 LAYKIKHPETFFLLRGNHE 196
L + + GNH+
Sbjct: 60 LVMSMVAAGAALCVPGNHD 78
>gnl|CDD|234457 TIGR04075, bacter_Pnkp, polynucleotide kinase-phosphatase. Members
of this protein family are the bacterial polynucleotide
kinase-phosphatase (Pnkp) whose genes occur paired with
genes for the 3' terminal RNA ribose
2'-O-methyltransferase Hen1. All members of the seed
alignment belong to a cassette with the Hen1. The pair
acts in bacterial RNA repair. This enzyme performs
end-healing reactions on broken RNA, preparing from the
RNA ligase to close the break. The working hypothesis is
that the combination of Pnkp (RNA repair) and Hen1 (RNA
modification) serves to first repair RNA damage from
ribotoxins and then perform a modification that prevents
the damage from recurring [Transcription, RNA
processing].
Length = 851
Score = 39.2 bits (92), Expect = 0.004
Identities = 45/182 (24%), Positives = 71/182 (39%), Gaps = 42/182 (23%)
Query: 48 LIALA-HHHVPKLGDNTIFN---KISKSVSMADPDLDL---IIQKLLD-----LRGTRQ- 94
L+ALA +HV L + + K+ + A PD D ++++ L+G ++
Sbjct: 90 LVALAREYHV--LPVAIVLDLPEKVCLERNAARPDRDFGPHVVRRQHQELRRSLKGLKRE 147
Query: 95 --RRNVRLEEKEIVSLIQISRKIFMSQP---MLLELEPPLKICGDVHGQYTDLLRLFD-- 147
R+ L E V I R +P + P I GDVHG +L L +
Sbjct: 148 GFRKVHVLRSPEEVDAATIER-----EPLWNDKRDEHGPFDIIGDVHGCRDELETLLEEL 202
Query: 148 --------HGKFPPASN-----YLFLGDYVDRGKQSLETICLLLAYKIKHPETFFLLRGN 194
G+ ++ +F+GD VDRG S L L + T + GN
Sbjct: 203 GYQIERDEGGRPVDVTHPEGRKAVFVGDLVDRGPDSPGV--LRLVMGMVAAGTALCVPGN 260
Query: 195 HE 196
H+
Sbjct: 261 HD 262
>gnl|CDD|184187 PRK13625, PRK13625, bis(5'-nucleosyl)-tetraphosphatase PrpE;
Provisional.
Length = 245
Score = 37.4 bits (87), Expect = 0.008
Identities = 37/163 (22%), Positives = 62/163 (38%), Gaps = 47/163 (28%)
Query: 131 ICGDVHGQYTDLLRL-------FDHGK--FPPASNYLFLGDYVDRGKQSLETICLLLAYK 181
I GD+HG Y + L + G P F+GD DRG SL I ++ ++
Sbjct: 5 IIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIV--WE 62
Query: 182 IKHPETFFLLRGNHESANINRIYGFYDECKRRYNVKL----------WKT---------- 221
+ + + + GNH N++Y F+ R NV + ++
Sbjct: 63 LVEKKAAYYVPGNH----CNKLYRFF---LGR-NVTIAHGLETTVAEYEALPSHKQNMIK 114
Query: 222 --FTECFNCMPVAAIVDE-KIFCCHGGLSPDLDSFEDIKRIPR 261
F + P+ I+DE ++ H G+ D I R +
Sbjct: 115 EKFITLYEQAPLYHILDEGRLVVAHAGIRQD-----YIGRQDK 152
>gnl|CDD|235672 PRK06012, flhA, flagellar biosynthesis protein FlhA; Validated.
Length = 697
Score = 28.9 bits (66), Expect = 4.8
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 18 SPSIMNTKISSILGKRHKSQYCEHHETQQLLIALAHHHVPKLGDNTIFNKIS 69
+++ T ++ ++ K H ++ E QQLL LA + PKL + + +S
Sbjct: 484 PSTVVATHLTEVI-KNHAAELLGRQEVQQLLDRLAKEY-PKLVEELVPKVLS 533
>gnl|CDD|132166 TIGR03122, one_C_dehyd_C, formylmethanofuran dehydrogenase subunit
C. Members of this largely archaeal protein family are
subunit C of the formylmethanofuran dehydrogenase.
Nomenclature in some bacteria may reflect inclusion of
the formyltransferase described by TIGR03119 as part of
the complex, and therefore call this protein
formyltransferase/hydrolase complex Fhc subunit C. Note
that this model does not distinguish tungsten (FwdC)
from molybdenum-containing (FmdC) forms of this enzyme.
Length = 260
Score = 28.1 bits (63), Expect = 7.5
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 124 ELEPPLKICGDVHGQYTDLLRLFDHGKFPPASNYLFLGDYVDRGK 168
EL P K G+ + LL L + F GDY ++GK
Sbjct: 212 ELLPSFKFEGEHELPFLPLL-LKSAFTQAIGTFRKFTGDYANKGK 255
>gnl|CDD|163628 cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins,
C-terminal metallophosphatase domain. YkuE is an
uncharacterized Bacillus subtilis protein with a
C-terminal metallophosphatase domain and an N-terminal
twin-arginine (RR) motif. An RR-signal peptide derived
from the Bacillus subtilis YkuE protein can direct
Tat-dependent secretion of agarase in Streptomyces
lividans. This is an indication that YkuE is transported
by the Bacillus subtilis Tat (Twin-arginine
translocation) pathway machinery. YkuE belongs to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 223
Score = 28.0 bits (63), Expect = 7.7
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 158 LFLGDYVDRGKQSLETICLLLAYKIKHPE-TFFLLRGNHE 196
+ GD VD LE + LL K+K P + +L GNH+
Sbjct: 37 VLTGDLVDGSVDVLELLLELLK-KLKAPLGVYAVL-GNHD 74
>gnl|CDD|133018 cd02537, GT8_Glycogenin, Glycogenin belongs the GT 8 family and
initiates the biosynthesis of glycogen. Glycogenin
initiates the biosynthesis of glycogen by incorporating
glucose residues through a self-glucosylation reaction
at a Tyr residue, and then acts as substrate for chain
elongation by glycogen synthase and branching enzyme. It
contains a conserved DxD motif and an N-terminal
beta-alpha-beta Rossmann-like fold that are common to
the nucleotide-binding domains of most
glycosyltransferases. The DxD motif is essential for
coordination of the catalytic divalent cation, most
commonly Mn2+. Glycogenin can be classified as a
retaining glycosyltransferase, based on the relative
anomeric stereochemistry of the substrate and product in
the reaction catalyzed. It is placed in
glycosyltransferase family 8 which includes
lipopolysaccharide glucose and galactose transferases
and galactinol synthases.
Length = 240
Score = 28.0 bits (63), Expect = 7.7
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 241 CCHGG---LSPDLDSFEDI---KRIPRPTDVPDQGLL 271
+ G L P ++F D+ + D DQGLL
Sbjct: 127 LFNSGVFVLKPSEETFNDLLDALQDTPSFDGGDQGLL 163
>gnl|CDD|147832 pfam05894, Podovirus_Gp16, Podovirus DNA encapsidation protein
(Gp16). This family consists of several DNA
encapsidation protein (Gp16) sequences from the
phi-29-like viruses. Gene product 16 catalyzes the in
vivo and in vitro genome-encapsidation reaction.
Length = 333
Score = 28.3 bits (63), Expect = 8.3
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 147 DHGKFPP--ASNYLFLGDYVDRGKQSLETICLLLAYKIKHPETFFLLRGNHESANINRIY 204
D+G + P N+L L D V R ++ + ICL A I +P +FLL H +IN +
Sbjct: 126 DYGSYDPNEVRNFLNLMDTVFRARERVRCICLSNAVSIVNP--YFLLF--HIEPSINEPF 181
Query: 205 GFYDECK 211
DE
Sbjct: 182 QVDDEAV 188
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.140 0.434
Gapped
Lambda K H
0.267 0.0780 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,876,343
Number of extensions: 1944492
Number of successful extensions: 1456
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1408
Number of HSP's successfully gapped: 38
Length of query: 384
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 285
Effective length of database: 6,546,556
Effective search space: 1865768460
Effective search space used: 1865768460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (26.8 bits)