RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1403
(384 letters)
>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit;
carbohydrate metabolism, cell cycle, cell division; HET:
1ZN; 1.63A {Homo sapiens} PDB: 3e7b_A* 3egg_A* 3egh_A*
3hvq_A 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A
2o8a_A 1u32_A* 1s70_A*
Length = 299
Score = 585 bits (1510), Expect = 0.0
Identities = 230/298 (77%), Positives = 261/298 (87%)
Query: 73 SMADPDLDLIIQKLLDLRGTRQRRNVRLEEKEIVSLIQISRKIFMSQPMLLELEPPLKIC 132
M +LD II +LL+++G+R +NV+L E EI L SR+IF+SQP+LLELE PLKIC
Sbjct: 2 HMGSLNLDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAPLKIC 61
Query: 133 GDVHGQYTDLLRLFDHGKFPPASNYLFLGDYVDRGKQSLETICLLLAYKIKHPETFFLLR 192
GD+HGQY DLLRLF++G FPP SNYLFLGDYVDRGKQSLETICLLLAYKIK+PE FFLLR
Sbjct: 62 GDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLR 121
Query: 193 GNHESANINRIYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPDLDS 252
GNHE A+INRIYGFYDECKRRYN+KLWKTFT+CFNC+P+AAIVDEKIFCCHGGLSPDL S
Sbjct: 122 GNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQS 181
Query: 253 FEDIKRIPRPTDVPDQGLLCDLLWSDPDNNILDWGDNDRGVSYTFGPNVVKTFLDKHHMD 312
E I+RI RPTDVPDQGLLCDLLWSDPD ++ WG+NDRGVS+TFG VV FL KH +D
Sbjct: 182 MEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDLD 241
Query: 313 LICRAHQVVEEGYEFFADKKLVTLFSAPNYCGEFDNAGAMMSVDQNLMCSFQILKPTE 370
LICRAHQVVE+GYEFFA ++LVTLFSAPNYCGEFDNAGAMMSVD+ LMCSFQILKP +
Sbjct: 242 LICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAD 299
>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase,
toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN;
2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
Length = 330
Score = 584 bits (1507), Expect = 0.0
Identities = 232/307 (75%), Positives = 266/307 (86%), Gaps = 3/307 (0%)
Query: 74 MADP---DLDLIIQKLLDLRGTRQRRNVRLEEKEIVSLIQISRKIFMSQPMLLELEPPLK 130
M+D +LD II +LL+++G+R +NV+L E EI L SR+IF+SQP+LLELE PLK
Sbjct: 1 MSDSEKLNLDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAPLK 60
Query: 131 ICGDVHGQYTDLLRLFDHGKFPPASNYLFLGDYVDRGKQSLETICLLLAYKIKHPETFFL 190
ICGD+HGQY DLLRLF++G FPP SNYLFLGDYVDRGKQSLETICLLLAYKIK+PE FFL
Sbjct: 61 ICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFL 120
Query: 191 LRGNHESANINRIYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPDL 250
LRGNHE A+INRIYGFYDECKRRYN+KLWKTFT+CFNC+P+AAIVDEKIFCCHGGLSPDL
Sbjct: 121 LRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDL 180
Query: 251 DSFEDIKRIPRPTDVPDQGLLCDLLWSDPDNNILDWGDNDRGVSYTFGPNVVKTFLDKHH 310
S E I+RI RPTDVPDQGLLCDLLWSDPD ++ WG+NDRGVS+TFG VV FL KH
Sbjct: 181 QSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHD 240
Query: 311 MDLICRAHQVVEEGYEFFADKKLVTLFSAPNYCGEFDNAGAMMSVDQNLMCSFQILKPTE 370
+DLICRAHQVVE+GYEFFA ++LVTLFSAPNYCGEFDNAGAMMSVD+ LMCSFQILKP +
Sbjct: 241 LDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAD 300
Query: 371 RNRAGPK 377
+N+
Sbjct: 301 KNKGKYG 307
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic
subunit alpha isoform; protein-protein complex, heat
repeat, signaling protein; HET: OKA; 2.60A {Homo
sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C*
3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C*
2nyl_C*
Length = 309
Score = 560 bits (1446), Expect = 0.0
Identities = 132/301 (43%), Positives = 194/301 (64%), Gaps = 10/301 (3%)
Query: 73 SMADPDLDLIIQKLLDLRGTRQRRNVRLEEKEIVSLIQISRKIFMSQPMLLELEPPLKIC 132
+ +LD I++L + + +L E ++ SL + +++I + + E+ P+ +C
Sbjct: 4 KVFTKELDQWIEQLNECK--------QLSESQVKSLCEKAKEILTKESNVQEVRCPVTVC 55
Query: 133 GDVHGQYTDLLRLFDHGKFPPASNYLFLGDYVDRGKQSLETICLLLAYKIKHPETFFLLR 192
GDVHGQ+ DL+ LF G P +NYLF+GDYVDRG S+ET+ LL+A K+++ E +LR
Sbjct: 56 GDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILR 115
Query: 193 GNHESANINRIYGFYDECKRRY-NVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPDLD 251
GNHES I ++YGFYDEC R+Y N +WK FT+ F+ +P+ A+VD +IFC HGGLSP +D
Sbjct: 116 GNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSID 175
Query: 252 SFEDIKRIPRPTDVPDQGLLCDLLWSDPDNNILDWGDNDRGVSYTFGPNVVKTFLDKHHM 311
+ + I+ + R +VP +G +CDLLWSDPD + WG + RG YTFG ++ +TF + +
Sbjct: 176 TLDHIRALDRLQEVPHEGPMCDLLWSDPD-DRGGWGISPRGAGYTFGQDISETFNHANGL 234
Query: 312 DLICRAHQVVEEGYEFFADKKLVTLFSAPNYCGEFDNAGAMMSVDQNLMCSFQILKPTER 371
L+ RAHQ+V EGY + D+ +VT+FSAPNYC N A+M +D L SF P R
Sbjct: 235 TLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPR 294
Query: 372 N 372
Sbjct: 295 R 295
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform;
protein-peptide docking, protein targeting, AKA
beta-augmentation, calmodulin-binding, membrane,
hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A*
1tco_A* 1mf8_A* 2jog_A
Length = 357
Score = 515 bits (1328), Expect = 0.0
Identities = 109/320 (34%), Positives = 181/320 (56%), Gaps = 27/320 (8%)
Query: 58 KLGDNTIFNKISKSVSMADPDLDLIIQKLLDLRGTRQRRNVRLEEKEIVSLIQISRKIFM 117
+L +F+ K P +D++ L + RLEE + +I I
Sbjct: 15 RLTAKEVFDNDGK------PRVDILKAHL--------MKEGRLEESVALRIITEGASILR 60
Query: 118 SQPMLLELEPPLKICGDVHGQYTDLLRLFDHGKFPPASNYLFLGDYVDRGKQSLETICLL 177
+ LL+++ P+ +CGD+HGQ+ DL++LF+ G P + YLFLGDYVDRG S+E + L
Sbjct: 61 QEKNLLDIDAPVTVCGDIHGQFFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYL 120
Query: 178 LAYKIKHPETFFLLRGNHESANINRIYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDE 237
A KI +P+T FLLRGNHE ++ + F ECK +Y+ +++ + F+C+P+AA++++
Sbjct: 121 WALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQ 180
Query: 238 KIFCCHGGLSPDLDSFEDIKRIPRPTDVPDQGLLCDLLWSDPDNNILDWGDND------- 290
+ C HGGLSP++++ +DI+++ R + P G +CD+LWSDP + + +
Sbjct: 181 QFLCVHGGLSPEINTLDDIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTV 240
Query: 291 RGVSYTFGPNVVKTFLDKHHMDLICRAHQVVEEGYEFFADKK------LVTLFSAPNYCG 344
RG SY + V FL +++ I RAH+ + GY + + L+T+FSAPNY
Sbjct: 241 RGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLD 300
Query: 345 EFDNAGAMMSVDQNLMCSFQ 364
++N A++ + N+M Q
Sbjct: 301 VYNNKAAVLKYENNVMNIRQ 320
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein,
structural genomics, PSI-2, protein structu initiative;
2.30A {Saccharomyces cerevisiae}
Length = 335
Score = 502 bits (1296), Expect = e-180
Identities = 104/305 (34%), Positives = 156/305 (51%), Gaps = 10/305 (3%)
Query: 73 SMADPDLDLIIQKLLD-LRGTRQRRNVRLEEKEIVSLIQISRKIFMSQPMLLELEP---- 127
+ + + Q+ + + + L +K + ++I + +F +P ++ELE
Sbjct: 3 AFKGAKIKNMSQEFISKMVNDLFLKGKYLPKKYVAAIISHADTLFRQEPSMVELENNSTP 62
Query: 128 --PLKICGDVHGQYTDLLRLFDH-GKFPPASNYLFLGDYVDRGKQSLETICLLLAYKIKH 184
+ +CGD HGQ+ D+L LF GK P YLF GD+VDRG S E L KI H
Sbjct: 63 DVKISVCGDTHGQFYDVLNLFRKFGKVGPKHTYLFNGDFVDRGSWSCEVALLFYCLKILH 122
Query: 185 PETFFLLRGNHESANINRIYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHG 244
P FFL RGNHES N+N+IYGF DECK +Y+ +++ F + F +P+A +++ HG
Sbjct: 123 PNNFFLNRGNHESDNMNKIYGFEDECKYKYSQRIFNMFAQSFESLPLATLINNDYLVMHG 182
Query: 245 GL-SPDLDSFEDIKRIPRPTDVPDQGLLCDLLWSDPDNNILDWGDNDRGVSYTFGPNVVK 303
GL S + D K I R P G +LLW+DP G + RG+ + FGP++
Sbjct: 183 GLPSDPSATLSDFKNIDRFAQPPRDGAFMELLWADPQ-EANGMGPSQRGLGHAFGPDITD 241
Query: 304 TFLDKHHMDLICRAHQVVEEGYEFFADKKLVTLFSAPNYCGEFDNAGAMMSVDQNLMCSF 363
FL + + I R+H++ G +F KL+T+FSAPNYC N G ++ V
Sbjct: 242 RFLRNNKLRKIFRSHELRMGGVQFEQKGKLMTVFSAPNYCDSQGNLGGVIHVVPGHGILQ 301
Query: 364 QILKP 368
Sbjct: 302 AGRND 306
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase,
immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Length = 521
Score = 504 bits (1300), Expect = e-178
Identities = 109/321 (33%), Positives = 181/321 (56%), Gaps = 27/321 (8%)
Query: 58 KLGDNTIFNKISKSVSMADPDLDLIIQKLLDLRGTRQRRNVRLEEKEIVSLIQISRKIFM 117
+L +F+ K P +D++ L + RLEE + +I I
Sbjct: 28 RLTAKEVFDNDGK------PRVDILKAHL--------MKEGRLEESVALRIITEGASILR 73
Query: 118 SQPMLLELEPPLKICGDVHGQYTDLLRLFDHGKFPPASNYLFLGDYVDRGKQSLETICLL 177
+ LL+++ P+ +CGD+HGQ+ DL++LF+ G P + YLFLGDYVDRG S+E + L
Sbjct: 74 QEKNLLDIDAPVTVCGDIHGQFFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYL 133
Query: 178 LAYKIKHPETFFLLRGNHESANINRIYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDE 237
A KI +P+T FLLRGNHE ++ + F ECK +Y+ +++ + F+C+P+AA++++
Sbjct: 134 WALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQ 193
Query: 238 KIFCCHGGLSPDLDSFEDIKRIPRPTDVPDQGLLCDLLWSDPDNNILDWGDND------- 290
+ C HGGLSP++++ +DI+++ R + P G +CD+LWSDP + + +
Sbjct: 194 QFLCVHGGLSPEINTLDDIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTV 253
Query: 291 RGVSYTFGPNVVKTFLDKHHMDLICRAHQVVEEGYEFFADKK------LVTLFSAPNYCG 344
RG SY + V FL +++ I RAH+ + GY + + L+T+FSAPNY
Sbjct: 254 RGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLD 313
Query: 345 EFDNAGAMMSVDQNLMCSFQI 365
++N A++ + N+M Q
Sbjct: 314 VYNNKAAVLKYENNVMNIRQF 334
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors,
drug design, cytoplasm, hydrolase, iron, manganese,
metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens}
PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A*
3h68_A* 3h69_A* 1s95_A
Length = 315
Score = 490 bits (1263), Expect = e-175
Identities = 109/312 (34%), Positives = 169/312 (54%), Gaps = 16/312 (5%)
Query: 74 MADPDLDLIIQKLLDLRGTRQRRNVRLEEKEIVSLIQISRKIFMSQPMLLELE----PPL 129
+ + ++Q + +L K ++ +++ L+E +
Sbjct: 11 VTISFMKELMQWY--------KDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKI 62
Query: 130 KICGDVHGQYTDLLRLFDHGKFPPASN-YLFLGDYVDRGKQSLETICLLLAYKIKHPETF 188
+CGD HGQ+ DLL +F+ P +N Y+F GD+VDRG S+E I L +K+ +P+ F
Sbjct: 63 TVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHF 122
Query: 189 FLLRGNHESANINRIYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGL-S 247
LLRGNHE+ N+N+IYGF E K +Y ++++ F+E F +P+A ++ K+ HGGL S
Sbjct: 123 HLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFS 182
Query: 248 PDLDSFEDIKRIPRPTDVPDQGLLCDLLWSDPDNNILDWGDNDRGVSYTFGPNVVKTFLD 307
D + +DI++I R PD G +CDLLWSDP + RGVS FGP+V K FL+
Sbjct: 183 EDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQ-PQNGRSISKRGVSCQFGPDVTKAFLE 241
Query: 308 KHHMDLICRAHQVVEEGYEFFADKKLVTLFSAPNYCGEFDNAGAMMSVDQN-LMCSFQIL 366
++++D I R+H+V EGYE + VT+FSAPNYC + N + + + + L F
Sbjct: 242 ENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQF 301
Query: 367 KPTERNRAGPKA 378
P A
Sbjct: 302 TAVPHPNVKPMA 313
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 484 bits (1247), Expect = e-170
Identities = 109/313 (34%), Positives = 169/313 (53%), Gaps = 16/313 (5%)
Query: 73 SMADPDLDLIIQKLLDLRGTRQRRNVRLEEKEIVSLIQISRKIFMSQPMLLELE----PP 128
+ + ++Q + +L K ++ +++ L+E
Sbjct: 163 KVTISFMKELMQWY--------KDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEK 214
Query: 129 LKICGDVHGQYTDLLRLFDHGKFPPASN-YLFLGDYVDRGKQSLETICLLLAYKIKHPET 187
+ +CGD HGQ+ DLL +F+ P +N Y+F GD+VDRG S+E I L +K+ +P+
Sbjct: 215 ITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDH 274
Query: 188 FFLLRGNHESANINRIYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGL- 246
F LLRGNHE+ N+N+IYGF E K +Y ++++ F+E F +P+A ++ K+ HGGL
Sbjct: 275 FHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLF 334
Query: 247 SPDLDSFEDIKRIPRPTDVPDQGLLCDLLWSDPDNNILDWGDNDRGVSYTFGPNVVKTFL 306
S D + +DI++I R PD G +CDLLWSDP + RGVS FGP+V K FL
Sbjct: 335 SEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQ-PQNGRSISKRGVSCQFGPDVTKAFL 393
Query: 307 DKHHMDLICRAHQVVEEGYEFFADKKLVTLFSAPNYCGEFDNAGAMMSVDQN-LMCSFQI 365
+++++D I R+H+V EGYE + VT+FSAPNYC + N + + + + L F
Sbjct: 394 EENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQ 453
Query: 366 LKPTERNRAGPKA 378
P A
Sbjct: 454 FTAVPHPNVKPMA 466
>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle,
hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A
Length = 342
Score = 109 bits (274), Expect = 2e-27
Identities = 56/246 (22%), Positives = 83/246 (33%), Gaps = 24/246 (9%)
Query: 110 QISRKIFMSQPMLLELEPPLKICGDVHGQYTDLLRLFDHGKFPPASN--------YLFLG 161
++S +I P + DVHGQY LL L K + + G
Sbjct: 54 KLSSEIKQIMPDTYLGIKKVVALSDVHGQYDVLLTLLKKQKIIDSDGNWAFGEGHMVMTG 113
Query: 162 DYVDRGKQSLETICLLLAYKIKHPET---FFLLRGNHESANI-------NRIYGFYDECK 211
D DRG Q E + + + + LL GNHE + ++ Y
Sbjct: 114 DIFDRGHQVNEVLWFMYQLDQQARDAGGMVHLLMGNHEQMVLGGDLRYVHQRYDIATTLI 173
Query: 212 RRYNVKLWKTFTECFNCMPV--AAIVDEKIFCCHGGLSPDLDSFEDIKRIPRPTDVPDQG 269
R KL+ TE + I + HGG+S + S E +
Sbjct: 174 NRPYNKLYSADTEIGQWLRSKNTIIKINDVLYMHGGISSEWISRELTLDKANALYRANVD 233
Query: 270 LLCDLLWSDPDNNILDWGDN---DRG-VSYTFGPNVVKTFLDKHHMDLICRAHQVVEEGY 325
L +D N L +G+ RG S TF + T L +++ I H E
Sbjct: 234 ASKKSLKADDLLNFLFFGNGPTWYRGYFSETFTEAELDTILQHFNVNHIVVGHTSQERVL 293
Query: 326 EFFADK 331
F +K
Sbjct: 294 GLFHNK 299
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine
tetraphosphatase, monomer, PSI- 2, protein structure
initiative, nysgrc; 2.05A {Trypanosoma brucei}
Length = 262
Score = 72.4 bits (178), Expect = 1e-14
Identities = 27/159 (16%), Positives = 54/159 (33%), Gaps = 26/159 (16%)
Query: 109 IQISRKIFMSQPMLLELEPPLKICGDVHGQYTDLLRLFDHGKFPPASNYL-FLGDYVDRG 167
+ + + + + L + + I GD+HG L L F S+ L +GD V++G
Sbjct: 1 MSLKVQGYANVVTLPNVTGRVIIVGDIHGCRAQLEDLLRAVSFKQGSDTLVAVGDLVNKG 60
Query: 168 KQSLETICLLLAYKIKHPETFFLLRGNHESANINRIYGFYDECKRRYNVKLWKTFTEC-- 225
S + LL + + GNH+ ++ + ++ +K +
Sbjct: 61 PDSFGVVRLLKRLG------AYSVLGNHD----AKLLKLVKKLGKKECLKGRDAKSSLAP 110
Query: 226 ------------FNCMPVAAIVDE-KIFCCHGGLSPDLD 251
+ +P + + H GL P
Sbjct: 111 LAQSIPTDVETYLSQLPHIIRIPAHNVMVAHAGLHPQRP 149
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr
protein phosphatase, ppase, manganese, sulfate, viral
protein; 2.15A {Enterobacteria phage lambda} SCOP:
d.159.1.3
Length = 221
Score = 65.6 bits (160), Expect = 1e-12
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 131 ICGDVHGQYTDLLRLFDHGKFPPASNYL-FLGDYVDRGKQSLETICLLLAYKIKHPETFF 189
+ GD+HG YT+L+ D F + L +GD VDRG +++E + L+ F
Sbjct: 17 VVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLELITFPW------FR 70
Query: 190 LLRGNHE 196
+RGNHE
Sbjct: 71 AVRGNHE 77
>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture,
hydrolase; 2.72A {Shigella flexneri 2A}
Length = 280
Score = 64.8 bits (157), Expect = 5e-12
Identities = 35/168 (20%), Positives = 59/168 (35%), Gaps = 11/168 (6%)
Query: 133 GDVHGQYTDLLRLFDHGKFPPASNYL-FLGDYVDRGKQSLETICLLLAYKIKHPETFFLL 191
GDVHG Y +L+ L +F P + L GD V RG SL+ + + ++ L+
Sbjct: 7 GDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYV----KSLGDSVRLV 62
Query: 192 RGNHESANINRIYGFYDECKRR-----YNVKLWKTFTECFNCMPVAAIVD-EKIFCCHGG 245
GNH+ + G + P+ I + +K+ H G
Sbjct: 63 LGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMAHAG 122
Query: 246 LSPDLDSFEDIKRIPRPTDVPDQGLLCDLLWSDPDNNILDWGDNDRGV 293
++P D + V L + + +W RG+
Sbjct: 123 ITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMPNNWSPELRGL 170
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural
genomics, MCSG, Zn binding, hydrolase; 1.95A
{Sphaerobacter thermophilus}
Length = 246
Score = 48.2 bits (114), Expect = 1e-06
Identities = 22/132 (16%), Positives = 38/132 (28%), Gaps = 21/132 (15%)
Query: 131 ICGDVHGQYTDLLRLFDHGKFPPASNYLFLGDYVDRGKQSLETICLLLAYKIKHPETFFL 190
I DVH L + + LGD V G + E + L+
Sbjct: 8 IISDVHANLVALEAVLSDAG--RVDDIWSLGDIVGYGPRPRECVELVRVLAPNIS----- 60
Query: 191 LRGNHESANINRIYGFYDECKRRYNVKLWKTFT---------ECFNCMPVAAIVDEKIFC 241
+ GNH+ A G + + +T + +P ++D
Sbjct: 61 VIGNHDWA----CIGRLSLDEFNPVARFASYWTTMQLQAEHLQYLESLPN-RMIDGDWTV 115
Query: 242 CHGGLSPDLDSF 253
HG + +
Sbjct: 116 VHGSPRHPIWEY 127
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric
AP4A hydrolase, phosphodiesterase, binding, Mn2+
binding, hydrolase; 1.90A {Streptococcus pneumoniae}
PDB: 3qfn_A 3qfo_A*
Length = 270
Score = 46.6 bits (110), Expect = 4e-06
Identities = 22/145 (15%), Positives = 38/145 (26%), Gaps = 20/145 (13%)
Query: 131 ICGDVHGQYTDLLRLFDHGKFPPASNYLFLGDYVDRGKQSLETICLLLAYKIKHPETFFL 190
+ D+HG T L + + Y LGD + G + LL I
Sbjct: 16 LLSDIHGNTTALEAVLADARQLGVDEYWLLGDILMPGTGRRRILDLLDQLPITA-----R 70
Query: 191 LRGNHESANINRIYGFYDECKRRYNVKL-------------WKTFTECFNCMPVAAIVDE 237
+ GN E + + + D + L D
Sbjct: 71 VLGNWEDSLWHGVRKELDSTRPSQRYLLRQCQYVLEEISLEEIEVLHNQPLQIHRQFGDL 130
Query: 238 KIFCCHGGLSPDLDSFEDIKRIPRP 262
+ H PD + ++ +
Sbjct: 131 TVGISHH--LPDKNWGRELIHTGKQ 153
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.0 bits (108), Expect = 2e-05
Identities = 51/358 (14%), Positives = 105/358 (29%), Gaps = 111/358 (31%)
Query: 14 ALSLSPSIMNTKISSILGKRHKSQYCEHHETQQLLIALAHHHVPKLGDN-------TIFN 66
SL ++ + + + + + +IA + DN +
Sbjct: 303 VKSLLLKYLDCRPQDL-----PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 67 KISKSVSMADPDL------DLII--------QKLLD-LRGTRQRRNVRLEEKEIV--SLI 109
I S+++ +P L + LL + + +V + ++ SL+
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 110 QISRKIFMSQ-PML-LELEPPLKICGDVH----GQYTDLLRLFDHGKF--PPASNYLFLG 161
+ K P + LEL+ L+ +H Y ++ + FD P Y +
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY-NIPKTFDSDDLIPPYLDQYFY-- 474
Query: 162 DYVDRGKQSLETICLLLAY---KIKHPETFFLLRGNHESANINRIY---GFYDECKRRYN 215
+ + + I+HPE L R ++ F ++ K R++
Sbjct: 475 SH--------------IGHHLKNIEHPERMTLFR---------MVFLDFRFLEQ-KIRHD 510
Query: 216 VKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPDLDSFEDIKRIPRPTDVPDQGLLCDLL 275
W G + L + K D + L+ +L
Sbjct: 511 STAW---------------------NASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549
Query: 276 WSDPDNNILDWGDNDRGVSYTFGPNVVKTFLDKHHMDLICRAHQVVEEGYEFFADKKL 333
F P + + + + DL+ A +E A K++
Sbjct: 550 --------------------DFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
Score = 28.3 bits (62), Expect = 5.2
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 11 TRPALSLSPSIMNTKISSILGKRHKSQYCEHHETQQLLIALAHHHVPKLGDNTIFNKISK 70
A + S SI+NT + + K +K C++ + L+ +PK+ +N I +K +
Sbjct: 510 DSTAWNASGSILNT-LQQL--KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
Query: 71 SVSMA 75
+ +A
Sbjct: 567 LLRIA 571
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP:
d.159.1.5 PDB: 2gju_A
Length = 252
Score = 42.1 bits (98), Expect = 1e-04
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 7/71 (9%)
Query: 133 GDVHGQYTDLLRLFDH-----GKFPPASNYLFLGDYVDRGKQSLETICLLLAYKIKHPET 187
++ G L + Y LG+ V E I ++ K E
Sbjct: 8 ANIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPYPKEVIEVIKDLTKK--EN 65
Query: 188 FFLLRGNHESA 198
++RG ++
Sbjct: 66 VKIIRGKYDQI 76
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 0.001
Identities = 60/335 (17%), Positives = 91/335 (27%), Gaps = 171/335 (51%)
Query: 6 ILFS------QTRPALSLSPSIMNTKISSILGKRHKSQYCEHHETQQLLIALAHHHVPK- 58
+LF + P SL PSI+ E++E VP
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSIL-------------EDSLENNEG-----------VPSP 337
Query: 59 -LGDNTIFNKISKSVSMADPDLDL-IIQKLLDLRGTRQRRNVRL-EEKEI-VSLIQISRK 114
L S+S +L +Q ++ + N L K++ +SL+ K
Sbjct: 338 ML-----------SIS----NLTQEQVQDYVN------KTNSHLPAGKQVEISLV-NGAK 375
Query: 115 IFMSQPMLLELEPPLKICGDVHGQYTDLLRLFDHGKFPPASNYLFLGDYVDRGKQSLETI 174
+ + G PP QSL +
Sbjct: 376 NLV-------------VSG------------------PP---------------QSLYGL 389
Query: 175 CLLLAYKIKHPETFFLLRGNHESANINRIYGFYDECKRRYNVKLWKTFTECFNCMPVAAI 234
L L K K P + +RI F +R KL F+ F +PVA+
Sbjct: 390 NLTLR-KAKAPSG----------LDQSRI-PF---SER----KL--KFSNRF--LPVAS- 425
Query: 235 VDEKIFCCHGGLSPDLDS-----FEDIK-----------RIP----------RPTDVPDQ 268
F H S L +D+ +IP R
Sbjct: 426 ----PF--H---SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS 476
Query: 269 GLLCDLLWSDPDNNILDWGDNDRGVSYT----FGP 299
+ D + P + W + T FGP
Sbjct: 477 ERIVDCIIRLP----VKWETTTQ-FKATHILDFGP 506
Score = 39.6 bits (92), Expect = 0.002
Identities = 56/371 (15%), Positives = 106/371 (28%), Gaps = 104/371 (28%)
Query: 8 FSQTRPALSLSPSIMNTKISSI------LGKRHKSQYCEHHETQQ----LLIALAHHHVP 57
F++ P + + + + LG + S E + Q L + L
Sbjct: 37 FNKILPEPTEGFAADDEPTTPAELVGKFLG--YVSSLVEPSKVGQFDQVLNLCLTEFENC 94
Query: 58 KLGDN---TIFNKISKSVSMADPDLDLIIQKLLDLRGTRQR----------------RNV 98
L N + K+ + +I+ + R +R N
Sbjct: 95 YLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA 154
Query: 99 RL----------EE--KEIVSLIQISRK-----IFMSQPMLLELEPPLKICGDVHGQYTD 141
+L ++ +E+ L Q I S L EL V Q +
Sbjct: 155 QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 142 LLR-LFDHGKFPPASNYLFLGDYVDRGKQSLETICL--LLAYKI------KHPETFF-LL 191
+L L + P DY+ S I + L Y + P L
Sbjct: 215 ILEWLENPSNTPDK-------DYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL 267
Query: 192 RGNHESANINRIY------------GFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKI 239
+G + + + F+ ++ V + C+ P +
Sbjct: 268 KGA--TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF-IGVRCYEAYPNTS------ 318
Query: 240 FCCHGGLSPDL--DSFEDIKRIPRP----TDVPDQGLLCDLLWSDPDNNILDWGDNDRGV 293
L P + DS E+ + +P P +++ + + + + N+ L +
Sbjct: 319 ------LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV---NKTNSHLP-AGKQVEI 368
Query: 294 SYTFGPN--VV 302
S G VV
Sbjct: 369 SLVNGAKNLVV 379
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.10A {Thermus
thermophilus} SCOP: d.159.1.6
Length = 228
Score = 35.1 bits (80), Expect = 0.024
Identities = 27/210 (12%), Positives = 57/210 (27%), Gaps = 27/210 (12%)
Query: 133 GDVHGQYTDLLRLFDHGKFPPASNYLFLGDYVDRGKQSLETICLLLAYKIKHPETFFLLR 192
+ G L + A +G+ + + +S + H T ++
Sbjct: 12 SNPMGDLEALEKFVKLAPDTGADAIALIGNLMPKAAKSRDYAAFFRILSEAHLPTAYVP- 70
Query: 193 GNHESANINRIYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPDLDS 252
G ++ + + ++ + GG D
Sbjct: 71 GPQDAPIWEYLREAANVELVHPEMRNVHET--------FTFWRGPYLVAGVGGEIADEGE 122
Query: 253 FEDIKRIPRPTDVPDQGLLCDLLWSDPDNNIL--------DWGDNDRGVSYTFGPNVVKT 304
E+ + + P V + L LW D + G N++G V
Sbjct: 123 PEEHEALRYPAWVAEYRL--KALWELKDYPKIFLFHTMPYHKGLNEQGSH------EVAH 174
Query: 305 FLDKHHMDLICRAHQVVEEGYEFFADKKLV 334
+ H+ L+ A + +E +V
Sbjct: 175 LIKTHNPLLVLVAG--KGQKHEMLGASWVV 202
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase,
PSI, protein structure initiative, midwest center for
structural genomics, MCSG; 2.25A {Escherichia coli}
SCOP: d.159.1.7
Length = 208
Score = 30.5 bits (69), Expect = 0.67
Identities = 18/118 (15%), Positives = 37/118 (31%), Gaps = 21/118 (17%)
Query: 131 ICGDVHGQYTDLLRLFDHGKFPPASNYLFLGDYVDRGKQSLETICL----LLAYKIKHPE 186
D+HG R+ + A + LGD ++ G ++ ++ +
Sbjct: 30 FASDIHGSLPATERVLELFAQSGAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNEVAH 89
Query: 187 TFFLLRGNHESANINRIYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHG 244
+RGN +S + F + L + +++F HG
Sbjct: 90 KVIAVRGNCDSEVDQMLLHF--PITAPWQQVLLE---------------KQRLFLTHG 130
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria
monocytogenes}
Length = 443
Score = 29.4 bits (65), Expect = 2.1
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 158 LFLGDYVDRG-KQSLETICLLLAYKIKHPETFFLLRGNHESANINRIYGFYDECKRRYNV 216
+ GD + G K S E + L K+ F++ GNH+ N D+ +
Sbjct: 97 IISGDLTNNGEKTSHEELAKKLTQVEKNGTQVFVVPGNHDINNPWARKFEKDKQLPTDTI 156
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 2.7
Identities = 5/19 (26%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 4 SIILFS-QTRPALSLSPSI 21
S+ L++ + PAL++ ++
Sbjct: 28 SLKLYADDSAPALAIKATM 46
Score = 28.0 bits (61), Expect = 3.5
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 102 EKEIVSLIQISRKIFM--SQPML 122
EK+ + +Q S K++ S P L
Sbjct: 18 EKQALKKLQASLKLYADDSAPAL 40
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Length = 540
Score = 28.8 bits (64), Expect = 3.5
Identities = 9/116 (7%), Positives = 24/116 (20%), Gaps = 9/116 (7%)
Query: 161 GDYVDRGKQSLETICLLLAYKIKHPETFFLLRGNHESANINRIYGFYDECKRRYNVKLWK 220
+ L + G + +++ + F + YN
Sbjct: 244 CHELSLMPLPDRETNGELIVVTRAYLNI--DEGPVKKSSLKSLLKFVEMKGDLYNCNGSL 301
Query: 221 TFTECFNCMPVAAIVDEK---IFCCHGG-LSPDLDSFEDIKRIPRPTDVPDQGLLC 272
+ ++ K + G L + + +I
Sbjct: 302 VKVPSDVNQLIEDALNVKTFKVLM--SGTLPE-SLTLTNSYKIVVNESYGRGEYYY 354
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown
function, NPPSFA, national PROJ protein structural and
functional analyses; 1.60A {Aquifex aeolicus} SCOP:
d.159.1.6
Length = 260
Score = 27.8 bits (61), Expect = 5.1
Identities = 8/64 (12%), Positives = 20/64 (31%), Gaps = 2/64 (3%)
Query: 128 PLKI--CGDVHGQYTDLLRLFDHGKFPPASNYLFLGDYVDRGKQSLETICLLLAYKIKHP 185
P K+ + ++ L +L + +G+ + E LA + +
Sbjct: 5 PRKVLAIKNFKERFDLLPKLKGVIAEKQPDILVVVGNILKNEALEKEYERAHLARREPNR 64
Query: 186 ETFF 189
+
Sbjct: 65 KVIH 68
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.8 bits (61), Expect = 5.4
Identities = 4/12 (33%), Positives = 8/12 (66%)
Query: 93 RQRRNVRLEEKE 104
R+ + RL+E +
Sbjct: 91 REEQRKRLQELD 102
>3mix_A Flagellar biosynthesis protein FLHA; flagella biosynthesis, protein
transport, type III secretion; 2.30A {Bacillus subtilis}
Length = 382
Score = 27.8 bits (62), Expect = 5.6
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 19 PSIMNTKISSILGKRHKSQYCEHHETQQLLIALAHHHVPKLGDNTIFNKISKSVSMADPD 78
S+++T I+ + K+H + ET+QL+ L + P L + N +S
Sbjct: 171 ASVVSTHITEKI-KQHAHELIGRQETKQLIDHLKESY-PVLVEEVTPNPLSVGD------ 222
Query: 79 LDLIIQKLLD 88
+ ++ KLL
Sbjct: 223 IQKVLAKLLK 232
>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1
protease, hydrolase; 1.73A {Saccharomyces cerevisiae}
PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A
1gcb_A
Length = 457
Score = 27.8 bits (61), Expect = 7.1
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 7/72 (9%)
Query: 141 DLLRLFDHGKFPPASNYLFLGDYVDRGKQSLETICLLLAYKIKHPETFFLLRGN------ 194
++L + +F + YLF D +++ L+ I I +LL
Sbjct: 89 NVLSELNLKEFELSQAYLFFYDKLEKANYFLDQIVSSADQDIDSRLVQYLLAAPTEDGGQ 148
Query: 195 -HESANINRIYG 205
N+ + YG
Sbjct: 149 YSMFLNLVKKYG 160
>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A
{Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A
1jmy_A
Length = 579
Score = 27.3 bits (61), Expect = 9.0
Identities = 7/40 (17%), Positives = 14/40 (35%)
Query: 281 NNILDWGDNDRGVSYTFGPNVVKTFLDKHHMDLICRAHQV 320
L + + +F P + F+ ++L A V
Sbjct: 271 KLPLGSTEYPKLHYLSFVPVIDGDFIPDDPVNLYANAADV 310
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.434
Gapped
Lambda K H
0.267 0.0524 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,057,208
Number of extensions: 369311
Number of successful extensions: 602
Number of sequences better than 10.0: 1
Number of HSP's gapped: 568
Number of HSP's successfully gapped: 34
Length of query: 384
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 289
Effective length of database: 4,049,298
Effective search space: 1170247122
Effective search space used: 1170247122
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.6 bits)