RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1403
(384 letters)
>d1jk7a_ d.159.1.3 (A:) Protein phosphatase-1 (PP-1) {Human (Homo
sapiens), beta isoform [TaxId: 9606]}
Length = 294
Score = 381 bits (980), Expect = e-133
Identities = 230/291 (79%), Positives = 262/291 (90%)
Query: 78 DLDLIIQKLLDLRGTRQRRNVRLEEKEIVSLIQISRKIFMSQPMLLELEPPLKICGDVHG 137
++D IIQ+LL++RG++ +NV+L+E EI L SR+IF+SQP+LLELE PLKICGD+HG
Sbjct: 3 NIDSIIQRLLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHG 62
Query: 138 QYTDLLRLFDHGKFPPASNYLFLGDYVDRGKQSLETICLLLAYKIKHPETFFLLRGNHES 197
QY DLLRLF++G FPP SNYLFLGDYVDRGKQSLETICLLLAYKIK+PE FFLLRGNHE
Sbjct: 63 QYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHEC 122
Query: 198 ANINRIYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPDLDSFEDIK 257
A+INRIYGFYDECKRRYN+KLWKTFT+CFNC+P+AAIVDEKIFCCHGGLSPDL S E I+
Sbjct: 123 ASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQIR 182
Query: 258 RIPRPTDVPDQGLLCDLLWSDPDNNILDWGDNDRGVSYTFGPNVVKTFLDKHHMDLICRA 317
RI RPTDVPDQGLLCDLLWSDPD ++L WG+NDRGVS+TFG VV FL KH +DLICRA
Sbjct: 183 RIMRPTDVPDQGLLCDLLWSDPDKDVLGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRA 242
Query: 318 HQVVEEGYEFFADKKLVTLFSAPNYCGEFDNAGAMMSVDQNLMCSFQILKP 368
HQVVE+GYEFFA ++LVTLFSAPNYCGEFDNAGAMMSVD+ LMCSFQILKP
Sbjct: 243 HQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKP 293
>d1auia_ d.159.1.3 (A:) Protein phosphatase-2B (PP-2B, calcineurin A
subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 473
Score = 351 bits (903), Expect = e-119
Identities = 106/301 (35%), Positives = 175/301 (58%), Gaps = 21/301 (6%)
Query: 77 PDLDLIIQKLLDLRGTRQRRNVRLEEKEIVSLIQISRKIFMSQPMLLELEPPLKICGDVH 136
P +D++ L + RLEE + +I I + LL+++ P+ +CGD+H
Sbjct: 28 PRVDILKAHL--------MKEGRLEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIH 79
Query: 137 GQYTDLLRLFDHGKFPPASNYLFLGDYVDRGKQSLETICLLLAYKIKHPETFFLLRGNHE 196
GQ+ DL++LF+ G P + YLFLGDYVDRG S+E + L A KI +P+T FLLRGNHE
Sbjct: 80 GQFFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHE 139
Query: 197 SANINRIYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPDLDSFEDI 256
++ + F ECK +Y+ +++ + F+C+P+AA+++++ C HGGLSP++++ +DI
Sbjct: 140 CRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINTLDDI 199
Query: 257 KRIPRPTDVPDQGLLCDLLWSDPDNNILDWGDND-------RGVSYTFGPNVVKTFLDKH 309
+++ R + P G +CD+LWSDP + + + RG SY + V FL +
Sbjct: 200 RKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHN 259
Query: 310 HMDLICRAHQVVEEGYEFFADKK------LVTLFSAPNYCGEFDNAGAMMSVDQNLMCSF 363
++ I RAH+ + GY + + L+T+FSAPNY ++N A++ + N+M
Sbjct: 260 NLLSILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVMNIR 319
Query: 364 Q 364
Q
Sbjct: 320 Q 320
>d3c5wc1 d.159.1.3 (C:6-293) Protein phosphatase 2A catalytic
subunit alpha isoform, PP2A-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 288
Score = 339 bits (870), Expect = e-117
Identities = 131/292 (44%), Positives = 192/292 (65%), Gaps = 10/292 (3%)
Query: 78 DLDLIIQKLLDLRGTRQRRNVRLEEKEIVSLIQISRKIFMSQPMLLELEPPLKICGDVHG 137
+LD I++L + + +L E ++ SL + +++I + + E+ P+ +CGDVHG
Sbjct: 4 ELDQWIEQLNECK--------QLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHG 55
Query: 138 QYTDLLRLFDHGKFPPASNYLFLGDYVDRGKQSLETICLLLAYKIKHPETFFLLRGNHES 197
Q+ DL+ LF G P +NYLF+GDYVDRG S+ET+ LL+A K+++ E +LRGNHES
Sbjct: 56 QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHES 115
Query: 198 ANINRIYGFYDECKRRY-NVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPDLDSFEDI 256
I ++YGFYDEC R+Y N +WK FT+ F+ +P+ A+VD +IFC HGGLSP +D+ + I
Sbjct: 116 RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHI 175
Query: 257 KRIPRPTDVPDQGLLCDLLWSDPDNNILDWGDNDRGVSYTFGPNVVKTFLDKHHMDLICR 316
+ + R +VP +G +CDLLWSDPD+ WG + RG YTFG ++ +TF + + L+ R
Sbjct: 176 RALDRLQEVPHEGPMCDLLWSDPDDRG-GWGISPRGAGYTFGQDISETFNHANGLTLVSR 234
Query: 317 AHQVVEEGYEFFADKKLVTLFSAPNYCGEFDNAGAMMSVDQNLMCSFQILKP 368
AHQ+V EGY + D+ +VT+FSAPNYC N A+M +D L SF P
Sbjct: 235 AHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDP 286
>d1s95a_ d.159.1.3 (A:) Serine/threonine protein phosphatase 5, PP5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 322 bits (826), Expect = e-109
Identities = 109/303 (35%), Positives = 169/303 (55%), Gaps = 12/303 (3%)
Query: 83 IQKLLDLRGTRQRRNVRLEEKEIVSLIQISRKIFMSQPMLLELEP----PLKICGDVHGQ 138
+++L+ + +L K ++ +++ L+E + +CGD HGQ
Sbjct: 16 MKELMQ----WYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQ 71
Query: 139 YTDLLRLFDHGKFPPASN-YLFLGDYVDRGKQSLETICLLLAYKIKHPETFFLLRGNHES 197
+ DLL +F+ P +N Y+F GD+VDRG S+E I L +K+ +P+ F LLRGNHE+
Sbjct: 72 FYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHET 131
Query: 198 ANINRIYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGL-SPDLDSFEDI 256
N+N+IYGF E K +Y ++++ F+E F +P+A ++ K+ HGGL S D + +DI
Sbjct: 132 DNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSEDGVTLDDI 191
Query: 257 KRIPRPTDVPDQGLLCDLLWSDPDNNILDWGDNDRGVSYTFGPNVVKTFLDKHHMDLICR 316
++I R PD G +CDLLWSDP + RGVS FGP+V K FL+++++D I R
Sbjct: 192 RKIERNRQPPDSGPMCDLLWSDPQPQN-GRSISKRGVSCQFGPDVTKAFLEENNLDYIIR 250
Query: 317 AHQVVEEGYEFFADKKLVTLFSAPNYCGEFDNAGAMMSVD-QNLMCSFQILKPTERNRAG 375
+H+V EGYE + VT+FSAPNYC + N + + + +L F
Sbjct: 251 SHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTAVPHPNVK 310
Query: 376 PKA 378
P A
Sbjct: 311 PMA 313
>d1g5ba_ d.159.1.3 (A:) lambda ser/thr protein phosphatase
{Bacteriophage lambda [TaxId: 10710]}
Length = 219
Score = 71.4 bits (174), Expect = 5e-15
Identities = 34/139 (24%), Positives = 53/139 (38%), Gaps = 22/139 (15%)
Query: 131 ICGDVHGQYTDLLRLFDHGKFPPASN-YLFLGDYVDRGKQSLETICLLLAYKIKHPETFF 189
+ GD+HG YT+L+ D F + + +GD VDRG +++E + L F
Sbjct: 17 VVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLEL------ITFPWFR 70
Query: 190 LLRGNHESANINRIYGFYDECKRRYNVKLW------------KTFTECFNCMPVA---AI 234
+RGNHE I+ + + N W K + +P+
Sbjct: 71 AVRGNHEQMMIDGLSERGNVNHWLLNGGGWFFNLDYDKEILAKALAHKADELPLIIELVS 130
Query: 235 VDEKIFCCHGGLSPDLDSF 253
D+K CH D F
Sbjct: 131 KDKKYVICHADYPFDEYEF 149
>d1nnwa_ d.159.1.5 (A:) Hypothetical protein PF1291 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 251
Score = 62.8 bits (151), Expect = 8e-12
Identities = 17/143 (11%), Positives = 34/143 (23%), Gaps = 24/143 (16%)
Query: 131 ICGDVHGQYTDLLRLFDH-----GKFPPASNYLFLGDYVDRGKQSLETICLLLAYKIKHP 185
+ ++ G L + Y LG+ V E I ++ +
Sbjct: 5 VLANIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPYPKEVIEVI--KDLTKK 62
Query: 186 ETFFLLRGNHESANINRIYGFYDECK-----------------RRYNVKLWKTFTECFNC 228
E ++RG ++ D + +
Sbjct: 63 ENVKIIRGKYDQIIAMSDPHATDPGYIDKLELPGHVKKALKFTWEKLGHEGREYLRDLPI 122
Query: 229 MPVAAIVDEKIFCCHGGLSPDLD 251
V I ++F +G D
Sbjct: 123 YLVDKIGGNEVFGVYGSPINPFD 145
>d1su1a_ d.159.1.7 (A:) Phosphodiesterase yfcE {Escherichia coli
[TaxId: 562]}
Length = 184
Score = 48.0 bits (113), Expect = 3e-07
Identities = 19/134 (14%), Positives = 41/134 (30%), Gaps = 8/134 (5%)
Query: 131 ICGDVHGQYTDLLRLFDHGKFPPASNYLFLGDYVDRGKQSLETICL----LLAYKIKHPE 186
D+HG R+ + A + LGD ++ G ++ ++ +
Sbjct: 6 FASDIHGSLPATERVLELFAQSGAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNEVAH 65
Query: 187 TFFLLRGNHESANINRIYGFYDECKRRYNVKLWK----TFTECFNCMPVAAIVDEKIFCC 242
+RGN +S + F + + + T F + A+ +
Sbjct: 66 KVIAVRGNCDSEVDQMLLHFPITAPWQQVLLEKQRLFLTHGHLFGPENLPALNQNDVLVY 125
Query: 243 HGGLSPDLDSFEDI 256
P + +I
Sbjct: 126 GHTHLPVAEQRGEI 139
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus
thermophilus [TaxId: 274]}
Length = 228
Score = 40.1 bits (92), Expect = 2e-04
Identities = 22/204 (10%), Positives = 55/204 (26%), Gaps = 11/204 (5%)
Query: 131 ICGDVHGQYTDLLRLFDHGKFPPASNYLFLGDYVDRGKQSLETICLLLAYKIKHPETFFL 190
+ G L + A +G+ + + +S + H T ++
Sbjct: 10 ATSNPMGDLEALEKFVKLAPDTGADAIALIGNLMPKAAKSRDYAAFFRILSEAHLPTAYV 69
Query: 191 LRGNHESANINRIYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPDL 250
G ++ ++ + NV+L + + G ++ +
Sbjct: 70 P-GPQDAP-------IWEYLREAANVELVHPEMRNVHETFTFWRGPYLVAGVGGEIADEG 121
Query: 251 DSFEDIKRIPRPTDVPDQGLLCDLLWSDPDNNILDWGDNDRGVSYTFGPNVVKTFLDKHH 310
+ E + L P + +G++ V + H+
Sbjct: 122 EPEEHEALRYPAWVAEYRLKALWELKDYPKIFLFHTMPYHKGLNEQGSHEVAH-LIKTHN 180
Query: 311 MDLICRAHQVVEEGYEFFADKKLV 334
L+ A + +E +V
Sbjct: 181 PLLVLVAG--KGQKHEMLGASWVV 202
>d2yvta1 d.159.1.6 (A:4-260) Uncharacterized protein Aq_1956
{Aquifex aeolicus [TaxId: 63363]}
Length = 257
Score = 32.0 bits (71), Expect = 0.092
Identities = 21/208 (10%), Positives = 49/208 (23%), Gaps = 21/208 (10%)
Query: 128 PLKI--CGDVHGQYTDLLRLFDHGKFPPASNYLFLGDYVDRGKQSLE----TICLLLAYK 181
P K+ + ++ L +L + +G+ + E + +
Sbjct: 2 PRKVLAIKNFKERFDLLPKLKGVIAEKQPDILVVVGNILKNEALEKEYERAHLARREPNR 61
Query: 182 IKHPETFFLLRGNHE---------SANINRIYGFYDECKRRYNVKLWKTFT----ECFNC 228
E + + + G D + + ++ T
Sbjct: 62 KVIHENEHYIIETLDKFFREIGELGVKTFVVPGKNDAPLKIFLRAAYEAETAYPNIRVLH 121
Query: 229 MPVAAIVDEKIFCCHGGLSPDLDSFEDIKRIPRPTDVPDQGLLCDLLWSDPDNNILDWGD 288
A E GGL + + + + + +L + P + +
Sbjct: 122 EGFAGWRGEFEVIGFGGLLT--EHEFEEDFVLKYPRWYVEYILKFVNELKPRRLVTIFYT 179
Query: 289 NDRGVSYTFGPNVVKTFLDKHHMDLICR 316
G P K +I
Sbjct: 180 PPIGEFVDRTPEDPKHHGSAVVNTIIKS 207
>d2bvca1 d.15.9.1 (A:5-104) Glutamine synthetase, N-terminal domain
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 100
Score = 28.8 bits (64), Expect = 0.39
Identities = 8/61 (13%), Positives = 15/61 (24%), Gaps = 6/61 (9%)
Query: 221 TFTECFNCMPVAAIVDEKIFCCHGGLSPDLDSFEDIKRIPRPTDVPDQGLLCDLLWSDPD 280
F + + + I L PD ++ T + + DP
Sbjct: 42 VFDDGLAFDGSSIRGFQSIHESDMLLLPDPETARIDPFRAAKTLN----INFFVH--DPF 95
Query: 281 N 281
Sbjct: 96 T 96
>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT)
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 186
Score = 28.6 bits (63), Expect = 0.97
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 248 PDLDSFEDIKRIPRPTDVPDQGLLCDLLWSDPDNNILDWG 287
PD D F +P PT + + L+ L ++ +D G
Sbjct: 3 PD-DEFIKNPSVPGPTAMEVRCLIMCLAEPGKNDVAVDVG 41
>d1f52a1 d.15.9.1 (A:1-100) Glutamine synthetase, N-terminal domain
{Salmonella typhimurium [TaxId: 90371]}
Length = 100
Score = 27.6 bits (61), Expect = 0.98
Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 6/62 (9%)
Query: 220 KTFTECFNCMPVAAIVDEKIFCCHGGLSPDLDSFEDIKRIPRPTDVPDQGLLCDLLWSDP 279
+ F E + + I L PD + T + + CD+L +P
Sbjct: 41 EFFEEGKMFDGSSIGGWKGINESDMVLMPDASTAVIDPFFADSTLI----IRCDIL--EP 94
Query: 280 DN 281
Sbjct: 95 GT 96
>d2fpna1 d.129.10.1 (A:1-214) Hypothetical protein YwmB {Bacillus
subtilis [TaxId: 1423]}
Length = 214
Score = 28.7 bits (64), Expect = 1.1
Identities = 11/75 (14%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Query: 157 YLFLGDYVDRGKQSLETICLLLAYKIKHPETF--FLLRGNHESANINRIYGFYDECKRRY 214
+G Y D+ ++ + L+ K +P ++ + + N Y++ +R
Sbjct: 61 IKAIGTYTDKKNRTSFRLQLVTTLKKHNPTSYLLYEQMSLETPDSWND---TYEQFERET 117
Query: 215 NVKLWKTFTECFNCM 229
+++ F C+
Sbjct: 118 L-GIFQEKVVIFTCL 131
>d1egza_ c.1.8.3 (A:) Endoglucanase Cel5a {Erwinia chrysanthemi
[TaxId: 556]}
Length = 291
Score = 28.6 bits (63), Expect = 1.4
Identities = 21/146 (14%), Positives = 40/146 (27%), Gaps = 10/146 (6%)
Query: 203 IYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPDLDSFEDIKRIPRP 262
+ E R ++ ++ + P + E + R
Sbjct: 97 WHSHSAENNRSEAIRFFQEMARKYGNKPNVIYEIYNEPLQVSWSNTIKPYAEAVISAIRA 156
Query: 263 TDVPDQGLLCDLLWSDPDNNILDWGDNDRGVSYTFGPNVVKTFLDKHHMDLICRAHQVVE 322
D + ++ WS + N + ++YT + H L +A Q +
Sbjct: 157 IDPDNLIIVGTPSWSQNVDEASRDPINAKNIAYTL-----HFYAGTHGESLRNKARQALN 211
Query: 323 EGYEFFADKKLVTLFSAPNYCGEFDN 348
G F VT + N G
Sbjct: 212 NGIALF-----VTEWGTVNADGNGGV 232
>d1gkza1 a.29.5.1 (A:38-185) Branched-chain alpha-ketoacid
dehydrogenase kinase (BCK) {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 148
Score = 26.3 bits (58), Expect = 3.8
Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 14/76 (18%)
Query: 250 LDSFEDIKRIPRPTDVPDQGLLCDLLWSDPDNNILDWGDND-----RGV----SYTFGPN 300
+ +F+ + P D D+ C L+ +LD + G+ +
Sbjct: 63 IRAFQKLTDFPPIKDQADEAQYCQLV-----RQLLDDHKDVVTLLAEGLRESRKHIEDEK 117
Query: 301 VVKTFLDKHHMDLICR 316
+V+ FLDK +
Sbjct: 118 LVRYFLDKTLTSRLGI 133
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli
[TaxId: 562]}
Length = 245
Score = 26.9 bits (58), Expect = 4.2
Identities = 21/125 (16%), Positives = 28/125 (22%), Gaps = 7/125 (5%)
Query: 251 DSFEDIKRIPRPTDVPDQGLLCDLLWSDPDNNILD----WGDNDRGVSYTFGPNVVKTFL 306
E RI P L +L P ILD G+ + G +
Sbjct: 5 TISESEHRIHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDM 64
Query: 307 DKHHMDLICRAHQVVEEGYEFFADKKLVTLFSAPNYCGEFDNAGAMMSV---DQNLMCSF 363
R + + + A C GA
Sbjct: 65 SSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIAGGFAGAEELLA 124
Query: 364 QILKP 368
Q LKP
Sbjct: 125 QSLKP 129
>d1ii7a_ d.159.1.4 (A:) Mre11 {Archaeon Pyrococcus furiosus [TaxId:
2261]}
Length = 333
Score = 26.6 bits (57), Expect = 5.3
Identities = 22/184 (11%), Positives = 42/184 (22%), Gaps = 5/184 (2%)
Query: 138 QYTDLLRLFDHGKFPPASNYLFLGDYVDRGKQSLETICLLLAYKIKHPET---FFLLRGN 194
+ L GD + S T+ +A E F + GN
Sbjct: 25 FAEAFKNALEIAVQENVDFILIAGDLFHSSRPSPGTLKKAIALLQIPKEHSIPVFAIEGN 84
Query: 195 HESANINRIYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPDLDSFE 254
H+ R + + V + E + + G+ DL+
Sbjct: 85 HD--RTQRGPSVLNLLEDFGLVYVIGMRKEKVENEYLTSERLGNGEYLVKGVYKDLEIHG 142
Query: 255 DIKRIPRPTDVPDQGLLCDLLWSDPDNNILDWGDNDRGVSYTFGPNVVKTFLDKHHMDLI 314
+ + L +D +L G + + +
Sbjct: 143 MKYMSSAWFEANKEILKRLFRPTDNAILMLHQGVREVSEARGEDYFEIGLGDLPEGYLYY 202
Query: 315 CRAH 318
H
Sbjct: 203 ALGH 206
>d1s3la_ d.159.1.7 (A:) Putative phosphodiesterase MJ0936
{Methanococcus jannaschii [TaxId: 2190]}
Length = 165
Score = 26.0 bits (56), Expect = 5.8
Identities = 17/121 (14%), Positives = 31/121 (25%), Gaps = 20/121 (16%)
Query: 131 ICGDVHGQYTDLLRLFDHGKFPPASNYLFLGDYVDRGKQSLETICLLLAYKIKHPETFFL 190
I D H ++ + + + GD+V + F
Sbjct: 5 IMSDTHDHLPNIRKAIEIFNDENVETVIHCGDFVSL----------------FVIKEFEN 48
Query: 191 LRGNHESANINRIYGFYDECKRRYNVKLWKTFTECFNCMPVAAIVDEKIFCCHGGLSPDL 250
L N + N + ++ + + I D K F HG L
Sbjct: 49 LNANIIATYGNNDGERCKLKEWLKDINEENIIDDFISVE----IDDLKFFITHGHHQSVL 104
Query: 251 D 251
+
Sbjct: 105 E 105
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.140 0.434
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,487,034
Number of extensions: 71977
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 20
Length of query: 384
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 297
Effective length of database: 1,213,086
Effective search space: 360286542
Effective search space used: 360286542
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.0 bits)