Query psy14030
Match_columns 63
No_of_seqs 122 out of 1146
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 17:50:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14030.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14030hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02590 probable tyrosine dec 99.9 3.3E-24 7.2E-29 155.1 3.7 62 1-62 293-354 (539)
2 PF00282 Pyridoxal_deC: Pyrido 99.9 1.7E-23 3.6E-28 145.3 3.3 62 1-62 200-261 (373)
3 PLN02880 tyrosine decarboxylas 99.9 8.8E-23 1.9E-27 145.8 2.6 62 1-62 245-306 (490)
4 COG0076 GadB Glutamate decarbo 99.8 1.4E-21 3.1E-26 139.3 4.4 62 1-62 213-275 (460)
5 KOG0629|consensus 99.8 1.4E-21 3.1E-26 139.3 3.7 62 1-62 259-320 (510)
6 TIGR03811 tyr_de_CO2_Ent tyros 99.8 1.9E-20 4.1E-25 137.2 3.8 62 1-62 284-382 (608)
7 TIGR03799 NOD_PanD_pyr putativ 99.8 1.8E-20 3.9E-25 135.2 3.0 62 1-62 271-332 (522)
8 PLN02263 serine decarboxylase 99.8 3.6E-20 7.9E-25 132.7 3.7 62 1-62 234-300 (470)
9 KOG0628|consensus 99.8 1.6E-19 3.5E-24 129.3 1.5 62 1-62 241-302 (511)
10 PLN03032 serine decarboxylase; 99.7 1.4E-17 3.1E-22 116.3 3.7 62 1-62 167-233 (374)
11 PRK02769 histidine decarboxyla 99.7 4.4E-17 9.5E-22 113.6 4.6 62 1-62 166-230 (380)
12 TIGR01788 Glu-decarb-GAD gluta 99.7 2.3E-17 4.9E-22 116.8 3.2 61 1-62 192-260 (431)
13 cd06450 DOPA_deC_like DOPA dec 99.2 5.7E-12 1.2E-16 84.1 3.3 61 2-62 155-215 (345)
14 COG1104 NifS Cysteine sulfinat 99.1 1.4E-10 3.1E-15 82.1 4.1 54 3-62 149-202 (386)
15 KOG1383|consensus 99.0 5.7E-10 1.2E-14 80.6 3.6 61 1-62 224-288 (491)
16 PRK13520 L-tyrosine decarboxyl 98.9 9.9E-10 2.1E-14 74.0 3.8 61 2-62 158-219 (371)
17 TIGR03531 selenium_SpcS O-phos 98.8 4.6E-09 1E-13 75.2 4.4 57 3-62 213-272 (444)
18 TIGR03812 tyr_de_CO2_Arch tyro 98.8 5.3E-09 1.1E-13 70.6 3.4 60 3-62 161-224 (373)
19 PLN02651 cysteine desulfurase 98.5 2.1E-07 4.5E-12 63.5 4.4 54 3-62 146-199 (364)
20 TIGR02006 IscS cysteine desulf 98.3 1.1E-06 2.3E-11 60.8 4.4 54 3-62 150-203 (402)
21 cd01494 AAT_I Aspartate aminot 98.3 2E-06 4.3E-11 51.2 4.7 57 3-62 100-156 (170)
22 cd06453 SufS_like Cysteine des 98.2 2.2E-06 4.7E-11 58.1 4.3 54 3-62 147-200 (373)
23 TIGR03235 DNA_S_dndA cysteine 98.2 2E-06 4.2E-11 58.2 4.1 54 3-62 146-199 (353)
24 KOG1549|consensus 98.1 1.1E-06 2.4E-11 63.1 2.1 36 4-39 190-225 (428)
25 TIGR01977 am_tr_V_EF2568 cyste 98.1 3.7E-06 8.1E-11 56.8 4.3 54 3-62 145-198 (376)
26 cd00615 Orn_deC_like Ornithine 98.1 3.5E-06 7.5E-11 56.3 4.0 56 6-62 164-219 (294)
27 TIGR03402 FeS_nifS cysteine de 98.1 4.1E-06 9E-11 57.1 4.4 53 4-62 145-197 (379)
28 TIGR03403 nifS_epsilon cystein 98.1 4.5E-06 9.8E-11 57.1 4.2 54 3-62 148-201 (382)
29 PRK14012 cysteine desulfurase; 98.1 5.2E-06 1.1E-10 57.4 3.8 54 3-62 152-205 (404)
30 PRK09331 Sep-tRNA:Cys-tRNA syn 98.0 1.3E-05 2.9E-10 55.3 4.4 35 4-38 167-201 (387)
31 PTZ00094 serine hydroxymethylt 98.0 1.3E-05 2.8E-10 56.8 4.4 56 4-62 189-244 (452)
32 PRK02948 cysteine desulfurase; 97.9 1.2E-05 2.7E-10 54.8 4.0 35 3-37 146-180 (381)
33 PRK05367 glycine dehydrogenase 97.9 1.3E-05 2.9E-10 62.0 4.5 56 2-62 647-702 (954)
34 TIGR01979 sufS cysteine desulf 97.9 1.9E-05 4.1E-10 54.2 4.2 54 3-62 167-220 (403)
35 PRK09295 bifunctional cysteine 97.8 3E-05 6.4E-10 53.6 4.1 36 3-38 172-207 (406)
36 TIGR01814 kynureninase kynuren 97.8 5.1E-05 1.1E-09 52.6 5.0 37 3-39 179-215 (406)
37 PF00266 Aminotran_5: Aminotra 97.7 4.8E-05 1E-09 51.8 4.0 37 3-39 147-183 (371)
38 PRK07179 hypothetical protein; 97.7 5.3E-05 1.2E-09 52.4 4.1 34 4-37 190-223 (407)
39 COG0520 csdA Selenocysteine ly 97.7 6.6E-05 1.4E-09 53.3 4.3 38 2-39 169-206 (405)
40 PRK05937 8-amino-7-oxononanoat 97.7 4E-05 8.7E-10 52.6 3.1 34 4-37 152-185 (370)
41 cd00613 GDC-P Glycine cleavage 97.7 7E-05 1.5E-09 51.1 4.2 50 7-62 170-220 (398)
42 PRK04366 glycine dehydrogenase 97.6 6.7E-05 1.5E-09 53.8 3.5 51 7-62 219-270 (481)
43 cd06452 SepCysS Sep-tRNA:Cys-t 97.5 0.00016 3.4E-09 49.2 4.6 34 4-37 148-181 (361)
44 TIGR00461 gcvP glycine dehydro 97.5 0.00013 2.8E-09 56.8 4.4 55 2-62 635-690 (939)
45 PRK10874 cysteine sulfinate de 97.5 8.1E-05 1.8E-09 51.2 3.1 33 4-36 169-201 (401)
46 PLN02855 Bifunctional selenocy 97.5 0.00014 2.9E-09 50.7 4.0 35 3-37 181-215 (424)
47 TIGR03392 FeS_syn_CsdA cystein 97.5 8.1E-05 1.7E-09 51.2 2.8 34 4-37 166-199 (398)
48 cd00609 AAT_like Aspartate ami 97.5 0.00013 2.7E-09 48.0 3.2 37 3-39 140-179 (350)
49 cd06454 KBL_like KBL_like; thi 97.5 0.00024 5.3E-09 47.3 4.6 33 4-36 141-173 (349)
50 TIGR01976 am_tr_V_VC1184 cyste 97.4 0.00021 4.6E-09 48.8 3.9 34 3-36 164-197 (397)
51 TIGR01822 2am3keto_CoA 2-amino 97.4 0.00016 3.4E-09 49.4 3.1 32 5-36 180-211 (393)
52 TIGR01437 selA_rel uncharacter 97.4 0.00036 7.8E-09 48.2 4.5 31 5-35 159-189 (363)
53 PLN02721 threonine aldolase 97.3 0.00022 4.8E-09 47.7 3.0 56 6-62 149-207 (353)
54 cd06451 AGAT_like Alanine-glyo 97.3 0.00022 4.7E-09 48.0 2.9 34 3-36 132-165 (356)
55 TIGR02326 transamin_PhnW 2-ami 97.3 0.00029 6.4E-09 47.8 3.1 33 4-36 138-170 (363)
56 PRK05958 8-amino-7-oxononanoat 97.2 0.00031 6.7E-09 47.4 3.1 33 5-37 178-210 (385)
57 PRK05613 O-acetylhomoserine am 97.2 0.00059 1.3E-08 48.8 4.0 35 5-39 165-199 (437)
58 TIGR03301 PhnW-AepZ 2-aminoeth 97.1 0.00041 8.8E-09 46.3 2.6 33 4-36 134-166 (355)
59 TIGR02539 SepCysS Sep-tRNA:Cys 97.1 0.00055 1.2E-08 47.0 3.1 34 4-37 155-188 (370)
60 cd00614 CGS_like CGS_like: Cys 97.1 0.00058 1.3E-08 47.1 3.2 36 4-39 134-169 (369)
61 PRK13580 serine hydroxymethylt 97.0 0.0014 3E-08 48.1 4.8 59 4-62 227-285 (493)
62 PRK08134 O-acetylhomoserine am 97.0 0.00071 1.5E-08 48.3 3.2 34 5-38 159-192 (433)
63 cd00378 SHMT Serine-glycine hy 97.0 0.0011 2.4E-08 45.5 4.0 32 5-36 169-200 (402)
64 TIGR01821 5aminolev_synth 5-am 97.0 0.00075 1.6E-08 46.6 3.2 32 4-35 186-217 (402)
65 PRK00011 glyA serine hydroxyme 97.0 0.0013 2.8E-08 45.5 4.3 32 5-36 173-204 (416)
66 PRK05939 hypothetical protein; 97.0 0.0006 1.3E-08 48.0 2.7 35 4-38 140-174 (397)
67 PRK15029 arginine decarboxylas 97.0 0.0014 3.1E-08 50.1 4.7 41 6-46 322-362 (755)
68 PRK09064 5-aminolevulinate syn 97.0 0.00082 1.8E-08 46.4 3.2 31 5-35 188-218 (407)
69 PLN03226 serine hydroxymethylt 96.9 0.0013 2.8E-08 47.5 4.0 56 4-62 190-245 (475)
70 TIGR01825 gly_Cac_T_rel pyrido 96.9 0.00092 2E-08 45.4 3.1 33 5-37 173-205 (385)
71 cd06502 TA_like Low-specificit 96.9 0.00033 7.2E-09 46.6 0.9 27 10-36 144-170 (338)
72 cd00616 AHBA_syn 3-amino-5-hyd 96.9 0.0011 2.5E-08 44.2 3.3 33 5-37 113-145 (352)
73 PRK06767 methionine gamma-lyas 96.9 0.0011 2.5E-08 46.1 3.4 34 4-37 155-188 (386)
74 PRK13479 2-aminoethylphosphona 96.9 0.001 2.2E-08 45.1 3.1 33 4-36 140-172 (368)
75 PRK08133 O-succinylhomoserine 96.9 0.001 2.2E-08 46.5 3.2 35 4-38 155-189 (390)
76 TIGR01325 O_suc_HS_sulf O-succ 96.8 0.0017 3.6E-08 45.2 3.5 35 4-38 148-182 (380)
77 PRK13393 5-aminolevulinate syn 96.8 0.0014 3E-08 45.5 3.1 31 5-35 187-217 (406)
78 PRK08249 cystathionine gamma-s 96.8 0.0015 3.2E-08 46.0 3.2 35 4-38 158-192 (398)
79 PRK13237 tyrosine phenol-lyase 96.7 0.0017 3.7E-08 47.3 3.5 52 11-62 197-259 (460)
80 TIGR00858 bioF 8-amino-7-oxono 96.7 0.0016 3.6E-08 43.3 3.1 32 5-36 156-187 (360)
81 PRK06939 2-amino-3-ketobutyrat 96.7 0.0016 3.5E-08 44.2 3.0 31 5-35 184-214 (397)
82 PRK13392 5-aminolevulinate syn 96.7 0.0017 3.6E-08 45.1 3.2 32 4-35 187-218 (410)
83 PRK07812 O-acetylhomoserine am 96.7 0.0018 3.9E-08 46.3 3.4 34 4-37 164-197 (436)
84 TIGR02618 tyr_phenol_ly tyrosi 96.7 0.0019 4.2E-08 46.9 3.4 51 12-62 191-252 (450)
85 PF01276 OKR_DC_1: Orn/Lys/Arg 96.7 0.0012 2.5E-08 47.6 2.2 38 5-42 177-214 (417)
86 PRK13034 serine hydroxymethylt 96.7 0.0035 7.6E-08 44.2 4.6 55 5-62 176-230 (416)
87 TIGR01326 OAH_OAS_sulfhy OAH/O 96.7 0.0019 4.2E-08 45.5 3.2 33 5-37 152-184 (418)
88 TIGR01328 met_gam_lyase methio 96.7 0.0019 4.1E-08 45.3 3.1 35 4-38 153-187 (391)
89 PRK07504 O-succinylhomoserine 96.7 0.0022 4.8E-08 45.0 3.5 35 4-38 159-193 (398)
90 TIGR01329 cysta_beta_ly_E cyst 96.6 0.0023 5.1E-08 44.5 3.5 35 4-38 140-174 (378)
91 PLN02242 methionine gamma-lyas 96.6 0.002 4.4E-08 45.7 3.2 33 4-36 172-204 (418)
92 PRK07050 cystathionine beta-ly 96.6 0.002 4.3E-08 45.2 2.8 35 4-38 159-193 (394)
93 PRK06460 hypothetical protein; 96.5 0.0026 5.7E-08 44.3 3.2 34 4-37 139-172 (376)
94 PRK07671 cystathionine beta-ly 96.5 0.0027 5.9E-08 44.3 3.2 34 4-37 143-176 (377)
95 PRK11658 UDP-4-amino-4-deoxy-L 96.5 0.002 4.3E-08 44.7 2.5 33 5-37 128-160 (379)
96 PRK08574 cystathionine gamma-s 96.5 0.0031 6.8E-08 44.1 3.5 35 4-38 146-180 (385)
97 PRK00950 histidinol-phosphate 96.5 0.0025 5.4E-08 43.0 2.9 35 4-38 167-201 (361)
98 PRK05994 O-acetylhomoserine am 96.5 0.0032 6.9E-08 44.7 3.5 34 4-37 157-190 (427)
99 PRK08064 cystathionine beta-ly 96.5 0.0033 7.1E-08 44.0 3.5 36 4-39 147-182 (390)
100 PLN02409 serine--glyoxylate am 96.5 0.0022 4.7E-08 44.7 2.5 32 5-36 147-180 (401)
101 PRK13238 tnaA tryptophanase/L- 96.5 0.0024 5.2E-08 45.9 2.8 32 4-35 186-221 (460)
102 COG0075 Serine-pyruvate aminot 96.5 0.003 6.5E-08 45.1 3.1 31 4-34 140-170 (383)
103 PRK07811 cystathionine gamma-s 96.4 0.0038 8.2E-08 43.6 3.5 35 4-38 155-189 (388)
104 PLN02414 glycine dehydrogenase 96.4 0.0047 1E-07 48.5 4.1 35 2-36 673-707 (993)
105 PRK09028 cystathionine beta-ly 96.4 0.0027 5.9E-08 45.0 2.5 36 4-39 155-190 (394)
106 PRK00451 glycine dehydrogenase 96.4 0.0034 7.3E-08 44.0 2.9 28 6-33 214-243 (447)
107 TIGR01324 cysta_beta_ly_B cyst 96.3 0.0031 6.7E-08 44.2 2.6 36 4-39 144-179 (377)
108 PRK07503 methionine gamma-lyas 96.3 0.0049 1.1E-07 43.3 3.5 34 4-37 159-192 (403)
109 COG2008 GLY1 Threonine aldolas 96.3 0.0022 4.7E-08 45.3 1.7 51 7-60 142-197 (342)
110 PF01212 Beta_elim_lyase: Beta 96.3 0.0018 3.9E-08 44.2 1.2 48 11-61 144-193 (290)
111 PRK06176 cystathionine gamma-s 96.3 0.0052 1.1E-07 43.0 3.5 34 4-37 143-176 (380)
112 PRK05967 cystathionine beta-ly 96.3 0.0032 7E-08 44.7 2.4 36 4-39 158-193 (395)
113 PRK08248 O-acetylhomoserine am 96.2 0.0049 1.1E-07 44.0 3.2 33 4-36 158-190 (431)
114 TIGR02617 tnaA_trp_ase tryptop 96.2 0.0032 7E-08 46.1 2.3 52 10-61 202-264 (467)
115 PRK08861 cystathionine gamma-s 96.2 0.0054 1.2E-07 43.2 3.3 35 4-38 147-181 (388)
116 PRK08361 aspartate aminotransf 96.1 0.007 1.5E-07 41.7 3.4 36 4-39 175-213 (391)
117 PRK05968 hypothetical protein; 96.1 0.0045 9.8E-08 43.3 2.4 34 5-38 157-190 (389)
118 PRK07582 cystathionine gamma-l 96.1 0.0067 1.5E-07 42.1 3.1 33 4-36 141-173 (366)
119 TIGR03576 pyridox_MJ0158 pyrid 96.0 0.0052 1.1E-07 42.5 2.5 35 4-38 144-181 (346)
120 PLN02509 cystathionine beta-ly 96.0 0.0054 1.2E-07 44.4 2.6 36 4-39 226-261 (464)
121 PLN02656 tyrosine transaminase 96.0 0.0048 1E-07 43.0 2.1 36 4-39 178-216 (409)
122 TIGR03588 PseC UDP-4-keto-6-de 95.9 0.0085 1.8E-07 41.2 3.0 34 5-38 128-161 (380)
123 PRK06084 O-acetylhomoserine am 95.9 0.0097 2.1E-07 42.3 3.4 35 4-38 152-186 (425)
124 PRK07324 transaminase; Validat 95.9 0.0095 2.1E-07 41.0 3.1 35 4-38 162-199 (373)
125 TIGR02379 ECA_wecE TDP-4-keto- 95.8 0.0073 1.6E-07 42.1 2.6 35 4-38 125-159 (376)
126 PRK07505 hypothetical protein; 95.8 0.0093 2E-07 41.3 3.0 32 4-35 188-219 (402)
127 TIGR01265 tyr_nico_aTase tyros 95.8 0.01 2.2E-07 41.2 3.0 35 4-38 178-215 (403)
128 PRK08114 cystathionine beta-ly 95.8 0.012 2.6E-07 41.9 3.4 36 4-39 156-193 (395)
129 PRK07810 O-succinylhomoserine 95.7 0.013 2.8E-07 41.4 3.4 36 4-39 164-199 (403)
130 PLN00145 tyrosine/nicotianamin 95.7 0.011 2.3E-07 41.8 3.0 35 4-38 199-236 (430)
131 PRK06108 aspartate aminotransf 95.7 0.0064 1.4E-07 41.3 1.7 36 4-39 167-205 (382)
132 PRK07269 cystathionine gamma-s 95.7 0.014 3E-07 40.7 3.4 35 4-38 145-179 (364)
133 PLN02724 Molybdenum cofactor s 95.7 0.014 3E-07 44.5 3.7 54 3-62 200-261 (805)
134 PRK06234 methionine gamma-lyas 95.7 0.012 2.6E-07 41.3 3.0 36 4-39 158-195 (400)
135 PRK05764 aspartate aminotransf 95.6 0.01 2.2E-07 40.6 2.6 34 5-38 174-210 (393)
136 PRK03244 argD acetylornithine 95.6 0.013 2.8E-07 40.4 3.1 34 5-38 193-230 (398)
137 PRK05957 aspartate aminotransf 95.6 0.012 2.7E-07 40.6 3.0 36 4-39 169-207 (389)
138 PTZ00125 ornithine aminotransf 95.6 0.013 2.8E-07 40.2 3.1 34 5-38 188-225 (400)
139 PRK08045 cystathionine gamma-s 95.6 0.016 3.4E-07 40.7 3.5 36 4-39 146-181 (386)
140 PRK08776 cystathionine gamma-s 95.6 0.013 2.9E-07 41.3 3.1 34 4-37 154-187 (405)
141 PRK08247 cystathionine gamma-s 95.6 0.011 2.3E-07 40.9 2.5 35 4-38 145-179 (366)
142 PRK07568 aspartate aminotransf 95.6 0.014 3E-07 40.0 3.0 35 4-38 171-208 (397)
143 PLN03227 serine palmitoyltrans 95.5 0.015 3.2E-07 40.7 3.1 31 5-35 148-178 (392)
144 PRK09082 methionine aminotrans 95.5 0.0093 2E-07 41.0 2.0 35 5-39 173-210 (386)
145 PRK03080 phosphoserine aminotr 95.5 0.0065 1.4E-07 42.1 1.2 35 3-39 144-178 (378)
146 PLN02271 serine hydroxymethylt 95.4 0.032 6.9E-07 41.9 4.7 50 10-62 311-360 (586)
147 cd00617 Tnase_like Tryptophana 95.4 0.014 3E-07 41.9 2.6 26 11-36 172-197 (431)
148 PLN02822 serine palmitoyltrans 95.4 0.018 4E-07 41.5 3.2 30 6-35 256-285 (481)
149 PLN02624 ornithine-delta-amino 95.4 0.036 7.7E-07 39.9 4.6 34 5-38 234-271 (474)
150 TIGR01140 L_thr_O3P_dcar L-thr 95.3 0.018 3.9E-07 38.9 3.0 35 4-38 134-171 (330)
151 TIGR02080 O_succ_thio_ly O-suc 95.3 0.023 5E-07 39.8 3.4 35 4-38 145-179 (382)
152 cd00610 OAT_like Acetyl ornith 95.3 0.02 4.3E-07 39.2 3.1 33 5-37 201-237 (413)
153 PRK11706 TDP-4-oxo-6-deoxy-D-g 95.2 0.021 4.6E-07 39.4 3.1 34 5-38 126-159 (375)
154 PRK00854 rocD ornithine--oxo-a 95.2 0.02 4.4E-07 39.5 3.0 34 5-38 197-234 (401)
155 PRK07550 hypothetical protein; 95.2 0.02 4.4E-07 39.3 2.9 35 4-38 172-209 (386)
156 PLN02483 serine palmitoyltrans 95.1 0.024 5.1E-07 41.0 3.1 31 6-36 251-281 (489)
157 PRK09265 aminotransferase AlaT 94.9 0.025 5.5E-07 39.1 2.8 35 4-38 177-214 (404)
158 PRK04073 rocD ornithine--oxo-a 94.9 0.029 6.3E-07 38.9 3.1 34 5-38 196-233 (396)
159 PRK15399 lysine decarboxylase 94.8 0.039 8.4E-07 42.3 3.6 54 6-62 307-366 (713)
160 TIGR01885 Orn_aminotrans ornit 94.7 0.062 1.3E-06 37.2 4.3 33 6-38 197-233 (401)
161 PRK07309 aromatic amino acid a 94.6 0.045 9.8E-07 37.8 3.4 36 4-39 175-213 (391)
162 PRK06225 aspartate aminotransf 94.6 0.029 6.2E-07 38.4 2.4 34 4-37 166-202 (380)
163 PRK08912 hypothetical protein; 94.6 0.036 7.7E-07 38.1 2.8 35 4-38 168-205 (387)
164 TIGR01366 serC_3 phosphoserine 94.5 0.015 3.3E-07 40.2 0.9 35 2-39 135-169 (361)
165 PRK08363 alanine aminotransfer 94.5 0.038 8.1E-07 38.1 2.8 35 4-38 175-212 (398)
166 PRK10534 L-threonine aldolase; 94.5 0.037 8E-07 37.0 2.6 32 4-35 136-170 (333)
167 PRK15400 lysine decarboxylase 94.4 0.043 9.2E-07 42.1 3.2 38 6-45 307-344 (714)
168 PRK13578 ornithine decarboxyla 94.4 0.046 1E-06 41.9 3.3 38 6-44 292-330 (720)
169 TIGR03537 DapC succinyldiamino 94.3 0.053 1.1E-06 36.8 3.1 35 4-38 145-182 (350)
170 PRK07682 hypothetical protein; 94.2 0.051 1.1E-06 37.1 2.9 36 4-39 163-201 (378)
171 PRK06702 O-acetylhomoserine am 94.2 0.049 1.1E-06 39.2 2.9 34 4-37 156-189 (432)
172 TIGR01141 hisC histidinol-phos 94.2 0.048 1.1E-06 36.6 2.7 35 4-38 151-187 (346)
173 PRK12414 putative aminotransfe 94.1 0.036 7.8E-07 38.2 2.0 35 4-38 171-208 (384)
174 PRK07683 aminotransferase A; V 94.1 0.045 9.8E-07 37.7 2.5 36 4-39 170-208 (387)
175 PRK04260 acetylornithine amino 94.0 0.059 1.3E-06 36.9 3.0 34 5-38 175-212 (375)
176 PRK15407 lipopolysaccharide bi 94.0 0.051 1.1E-06 38.8 2.7 33 6-38 167-199 (438)
177 PLN00175 aminotransferase fami 94.0 0.048 1.1E-06 38.2 2.5 36 4-39 196-234 (413)
178 TIGR00707 argD acetylornithine 93.9 0.069 1.5E-06 36.2 3.0 26 13-38 192-217 (379)
179 KOG0053|consensus 93.9 0.067 1.5E-06 38.7 3.1 36 4-39 171-206 (409)
180 PRK09276 LL-diaminopimelate am 93.7 0.077 1.7E-06 36.3 3.1 35 4-38 175-212 (385)
181 PRK05942 aspartate aminotransf 93.7 0.069 1.5E-06 36.9 2.9 35 4-38 179-216 (394)
182 TIGR01264 tyr_amTase_E tyrosin 93.7 0.065 1.4E-06 37.0 2.7 35 4-38 177-214 (401)
183 COG0156 BioF 7-keto-8-aminopel 93.7 0.07 1.5E-06 38.2 2.9 34 6-39 182-215 (388)
184 TIGR03540 DapC_direct LL-diami 93.6 0.073 1.6E-06 36.4 2.8 35 4-38 173-210 (383)
185 PRK08056 threonine-phosphate d 93.6 0.077 1.7E-06 36.1 2.9 35 4-38 151-188 (356)
186 PRK13355 bifunctional HTH-doma 93.6 0.067 1.5E-06 38.6 2.7 35 4-38 290-327 (517)
187 PTZ00433 tyrosine aminotransfe 93.6 0.083 1.8E-06 36.8 3.1 35 4-38 186-223 (412)
188 PRK07777 aminotransferase; Val 93.5 0.087 1.9E-06 36.2 3.0 36 4-39 168-206 (387)
189 PF00464 SHMT: Serine hydroxym 93.5 0.091 2E-06 37.8 3.2 56 4-62 176-231 (399)
190 PRK08175 aminotransferase; Val 93.3 0.083 1.8E-06 36.5 2.7 35 4-38 173-210 (395)
191 PRK08354 putative aminotransfe 93.2 0.093 2E-06 35.2 2.8 35 4-38 126-163 (311)
192 PF01041 DegT_DnrJ_EryC1: DegT 93.2 0.07 1.5E-06 36.7 2.2 38 3-40 118-155 (363)
193 PRK03321 putative aminotransfe 93.1 0.09 2E-06 35.5 2.6 36 4-39 154-191 (352)
194 PRK06434 cystathionine gamma-l 93.1 0.11 2.4E-06 36.7 3.1 32 5-38 158-189 (384)
195 TIGR00474 selA seryl-tRNA(sec) 93.0 0.17 3.7E-06 36.6 4.0 27 10-36 230-256 (454)
196 PRK02731 histidinol-phosphate 93.0 0.097 2.1E-06 35.5 2.6 35 4-38 163-199 (367)
197 PLN00143 tyrosine/nicotianamin 93.0 0.12 2.5E-06 36.1 3.0 36 4-39 179-217 (409)
198 PRK03715 argD acetylornithine 92.9 0.12 2.6E-06 36.3 3.1 34 6-39 190-227 (395)
199 TIGR03539 DapC_actino succinyl 92.9 0.11 2.4E-06 35.4 2.8 35 4-38 151-188 (357)
200 PRK07681 aspartate aminotransf 92.5 0.15 3.2E-06 35.3 3.0 36 4-39 175-213 (399)
201 PF01053 Cys_Met_Meta_PP: Cys/ 92.4 0.11 2.5E-06 36.8 2.4 36 5-40 150-186 (386)
202 PRK06358 threonine-phosphate d 92.4 0.16 3.5E-06 34.7 3.1 35 4-38 150-187 (354)
203 PRK04311 selenocysteine syntha 92.4 0.28 6E-06 35.7 4.4 28 10-37 235-262 (464)
204 TIGR03246 arg_catab_astC succi 92.4 0.18 3.9E-06 35.1 3.4 28 11-38 199-226 (397)
205 PRK05387 histidinol-phosphate 92.4 0.16 3.5E-06 34.1 3.1 34 4-37 153-187 (353)
206 PRK07337 aminotransferase; Val 92.4 0.17 3.6E-06 34.8 3.1 35 4-38 172-209 (388)
207 KOG1359|consensus 92.4 0.16 3.5E-06 36.3 3.1 34 6-39 204-237 (417)
208 PRK08960 hypothetical protein; 92.3 0.17 3.7E-06 34.8 3.2 35 4-38 174-211 (387)
209 PRK09148 aminotransferase; Val 92.0 0.16 3.5E-06 35.3 2.8 35 4-38 174-211 (405)
210 PRK06348 aspartate aminotransf 92.0 0.21 4.5E-06 34.4 3.3 36 4-39 171-209 (384)
211 PRK06207 aspartate aminotransf 91.9 0.21 4.7E-06 34.8 3.3 35 4-38 187-224 (405)
212 PRK07865 N-succinyldiaminopime 91.9 0.11 2.4E-06 35.4 1.9 35 4-38 157-194 (364)
213 COG0436 Aspartate/tyrosine/aro 91.8 0.18 4E-06 35.6 2.9 38 2-39 170-210 (393)
214 PRK06290 aspartate aminotransf 91.8 0.2 4.3E-06 35.2 3.0 35 4-38 188-225 (410)
215 PTZ00377 alanine aminotransfer 91.8 0.16 3.5E-06 36.2 2.6 35 4-38 227-264 (481)
216 PRK02627 acetylornithine amino 91.5 0.14 3E-06 35.0 2.0 26 13-38 204-229 (396)
217 PRK01278 argD acetylornithine 91.4 0.15 3.4E-06 35.0 2.2 29 11-39 195-223 (389)
218 PLN02955 8-amino-7-oxononanoat 91.3 0.25 5.4E-06 36.3 3.2 34 6-39 260-293 (476)
219 PRK05093 argD bifunctional N-s 91.3 0.24 5.1E-06 34.4 3.0 27 12-38 205-231 (403)
220 TIGR03542 DAPAT_plant LL-diami 91.2 0.23 4.9E-06 34.5 2.8 35 4-38 182-219 (402)
221 PRK02936 argD acetylornithine 91.1 0.28 6E-06 33.5 3.1 27 12-38 188-214 (377)
222 PTZ00376 aspartate aminotransf 90.9 0.18 3.9E-06 35.1 2.1 36 4-39 185-223 (404)
223 PRK12566 glycine dehydrogenase 90.7 0.39 8.4E-06 38.1 3.9 33 4-36 650-682 (954)
224 TIGR03538 DapC_gpp succinyldia 90.7 0.29 6.3E-06 33.7 3.0 35 4-38 174-211 (393)
225 KOG1357|consensus 90.7 0.19 4E-06 37.3 2.0 34 6-39 287-320 (519)
226 PF00155 Aminotran_1_2: Aminot 90.6 0.32 6.8E-06 32.7 3.0 37 4-40 157-196 (363)
227 PRK03967 histidinol-phosphate 90.5 0.27 5.8E-06 33.4 2.6 34 4-38 149-182 (337)
228 COG0399 WecE Predicted pyridox 90.5 0.22 4.7E-06 35.6 2.2 33 6-38 130-162 (374)
229 PRK07049 methionine gamma-lyas 90.3 0.36 7.9E-06 34.4 3.2 36 4-39 183-224 (427)
230 PRK03158 histidinol-phosphate 90.2 0.3 6.5E-06 33.1 2.7 35 4-38 160-196 (359)
231 PLN02187 rooty/superroot1 90.2 0.35 7.5E-06 34.7 3.1 36 4-39 213-251 (462)
232 KOG2862|consensus 90.1 0.23 5.1E-06 35.5 2.1 31 3-33 150-181 (385)
233 PF05889 SLA_LP_auto_ag: Solub 90.1 0.27 5.9E-06 35.4 2.5 26 11-36 171-196 (389)
234 PLN02397 aspartate transaminas 90.1 0.28 6.1E-06 34.6 2.5 36 4-39 203-241 (423)
235 COG1103 Archaea-specific pyrid 90.0 0.3 6.5E-06 34.6 2.6 36 4-39 165-200 (382)
236 KOG1368|consensus 89.7 0.17 3.7E-06 36.1 1.2 25 11-35 174-198 (384)
237 PRK07908 hypothetical protein; 89.5 0.35 7.7E-06 32.7 2.6 33 4-37 148-180 (349)
238 PRK03317 histidinol-phosphate 89.5 0.41 8.9E-06 32.6 2.9 35 4-38 169-203 (368)
239 PRK08068 transaminase; Reviewe 89.2 0.41 8.9E-06 32.9 2.8 34 4-37 176-212 (389)
240 PRK04870 histidinol-phosphate 88.6 0.53 1.1E-05 31.9 3.0 35 4-38 162-196 (356)
241 PRK09440 avtA valine--pyruvate 88.6 0.51 1.1E-05 32.7 2.9 33 4-36 188-223 (416)
242 TIGR00713 hemL glutamate-1-sem 88.5 0.55 1.2E-05 32.8 3.0 30 8-37 208-241 (423)
243 PRK00062 glutamate-1-semialdeh 88.5 0.52 1.1E-05 33.3 2.9 31 7-37 209-243 (426)
244 COG0626 MetC Cystathionine bet 88.3 0.62 1.3E-05 33.6 3.2 36 4-39 158-193 (396)
245 PLN02760 4-aminobutyrate:pyruv 87.9 1.1 2.3E-05 32.8 4.3 34 7-40 272-309 (504)
246 PRK06836 aspartate aminotransf 87.9 0.64 1.4E-05 32.1 3.0 35 4-38 177-220 (394)
247 PRK14807 histidinol-phosphate 87.6 0.64 1.4E-05 31.6 2.8 34 4-37 157-190 (351)
248 PRK06425 histidinol-phosphate 87.4 0.73 1.6E-05 31.1 3.0 35 4-38 131-168 (332)
249 PRK06107 aspartate aminotransf 87.3 0.43 9.3E-06 33.1 1.9 34 4-37 175-212 (402)
250 COG2873 MET17 O-acetylhomoseri 87.1 0.74 1.6E-05 33.6 3.0 34 7-40 159-192 (426)
251 PLN03026 histidinol-phosphate 87.0 0.6 1.3E-05 32.3 2.4 35 3-38 183-217 (380)
252 PRK05769 4-aminobutyrate amino 86.7 0.76 1.6E-05 32.8 2.9 33 7-39 233-269 (441)
253 TIGR00700 GABAtrnsam 4-aminobu 86.7 0.8 1.7E-05 32.2 3.0 33 7-39 209-245 (420)
254 PRK01688 histidinol-phosphate 86.4 0.86 1.9E-05 31.1 2.9 35 4-38 154-190 (351)
255 KOG1360|consensus 86.1 0.68 1.5E-05 34.4 2.4 34 6-39 314-347 (570)
256 PRK09221 beta alanine--pyruvat 85.6 0.92 2E-05 32.5 2.9 32 7-38 230-265 (445)
257 PRK04781 histidinol-phosphate 85.5 0.96 2.1E-05 31.1 2.8 35 4-38 161-197 (364)
258 PRK08117 4-aminobutyrate amino 85.1 1.1 2.3E-05 31.7 3.0 32 8-39 220-255 (433)
259 PRK06855 aminotransferase; Val 85.0 1.1 2.4E-05 31.6 3.1 36 4-39 180-218 (433)
260 cd01455 vWA_F11C1-5a_type Von 84.9 0.93 2E-05 29.7 2.4 29 2-30 119-147 (191)
261 PRK15481 transcriptional regul 84.9 1 2.2E-05 31.5 2.8 35 4-38 221-259 (431)
262 PRK09147 succinyldiaminopimela 84.7 0.96 2.1E-05 31.2 2.6 35 4-38 175-212 (396)
263 PRK06541 hypothetical protein; 84.6 2.2 4.7E-05 30.8 4.4 34 6-39 232-269 (460)
264 PRK05166 histidinol-phosphate 84.4 1 2.2E-05 30.9 2.6 35 4-38 168-204 (371)
265 PRK04635 histidinol-phosphate 84.2 1.1 2.5E-05 30.4 2.7 35 4-38 156-191 (354)
266 COG3977 Alanine-alpha-ketoisov 84.1 0.72 1.6E-05 33.1 1.8 36 4-39 188-226 (417)
267 PRK08636 aspartate aminotransf 83.9 1.3 2.8E-05 30.7 2.9 35 4-38 184-221 (403)
268 PRK07590 L,L-diaminopimelate a 83.8 1.3 2.8E-05 30.8 2.9 35 4-38 185-222 (409)
269 PRK05367 glycine dehydrogenase 83.5 1.5 3.3E-05 34.7 3.4 29 6-34 216-244 (954)
270 PRK05839 hypothetical protein; 83.5 1.4 3E-05 30.3 2.9 35 4-38 164-201 (374)
271 PRK12389 glutamate-1-semialdeh 83.4 1.4 3E-05 31.3 3.0 31 7-37 212-246 (428)
272 PRK12381 bifunctional succinyl 83.2 1.8 3.8E-05 30.3 3.4 28 11-38 203-230 (406)
273 PLN02607 1-aminocyclopropane-1 82.8 1.7 3.6E-05 31.2 3.2 36 4-39 209-247 (447)
274 PRK09105 putative aminotransfe 82.7 1.3 2.9E-05 30.5 2.6 34 4-37 174-209 (370)
275 PRK12403 putative aminotransfe 82.3 1.7 3.6E-05 31.3 3.1 32 8-39 235-270 (460)
276 KOG0630|consensus 81.3 0.96 2.1E-05 34.5 1.6 31 2-32 299-330 (838)
277 TIGR00709 dat 2,4-diaminobutyr 81.3 3.3 7.2E-05 29.5 4.3 27 13-39 228-254 (442)
278 PLN02368 alanine transaminase 81.2 2 4.3E-05 30.4 3.1 36 4-39 219-257 (407)
279 PRK08593 4-aminobutyrate amino 81.1 1.9 4E-05 30.9 3.0 32 8-39 220-255 (445)
280 PRK05964 adenosylmethionine--8 81.1 2 4.2E-05 30.3 3.0 26 13-38 222-247 (423)
281 PRK08360 4-aminobutyrate amino 81.0 2 4.3E-05 30.8 3.1 34 6-39 215-252 (443)
282 PRK09264 diaminobutyrate--2-ox 80.8 1.3 2.8E-05 31.3 2.1 27 12-38 219-245 (425)
283 KOG0257|consensus 80.4 1.9 4.1E-05 31.5 2.8 36 4-39 181-219 (420)
284 COG0112 GlyA Glycine/serine hy 80.3 2.1 4.7E-05 31.2 3.0 57 3-62 172-228 (413)
285 PRK06062 hypothetical protein; 80.1 3.8 8.2E-05 29.4 4.3 32 8-39 227-262 (451)
286 PLN02376 1-aminocyclopropane-1 79.6 2.6 5.6E-05 30.7 3.3 35 4-38 208-245 (496)
287 PLN02231 alanine transaminase 79.2 1.9 4E-05 31.8 2.5 35 5-39 281-318 (534)
288 PF00128 Alpha-amylase: Alpha 78.6 1.4 3E-05 28.4 1.6 31 5-35 45-75 (316)
289 PRK09257 aromatic amino acid a 78.3 1.7 3.7E-05 30.0 2.0 35 4-38 181-218 (396)
290 PRK13360 omega amino acid--pyr 78.2 2.5 5.5E-05 30.2 2.9 33 7-39 227-263 (442)
291 PRK07366 succinyldiaminopimela 78.2 2.7 5.8E-05 28.9 2.9 36 4-39 174-212 (388)
292 PRK05355 3-phosphoserine/phosp 77.2 1.3 2.8E-05 30.8 1.1 31 3-39 149-180 (360)
293 TIGR02407 ectoine_ectB diamino 76.8 2.7 5.8E-05 29.7 2.7 28 12-39 215-242 (412)
294 TIGR03372 putres_am_tran putre 76.3 3.3 7.1E-05 29.9 3.0 32 8-39 237-272 (442)
295 PLN00144 acetylornithine trans 76.1 2.8 6.2E-05 29.2 2.6 26 14-39 190-215 (382)
296 TIGR03251 LAT_fam L-lysine 6-t 75.9 3 6.6E-05 29.6 2.7 28 12-39 239-266 (431)
297 PRK11522 putrescine--2-oxoglut 75.8 3.5 7.5E-05 29.8 3.0 33 7-39 243-279 (459)
298 PRK04013 argD acetylornithine/ 75.5 3.1 6.7E-05 29.2 2.7 24 14-37 185-208 (364)
299 TIGR00699 GABAtrns_euk 4-amino 75.4 6.9 0.00015 28.6 4.5 32 8-39 264-299 (464)
300 PRK08153 histidinol-phosphate 75.2 3.6 7.8E-05 28.2 2.9 36 3-38 163-200 (369)
301 PRK14808 histidinol-phosphate 75.1 3.2 7E-05 28.2 2.6 33 4-37 147-179 (335)
302 PRK06105 aminotransferase; Pro 75.1 6.8 0.00015 28.2 4.4 32 8-39 231-266 (460)
303 TIGR03801 asp_4_decarbox aspar 74.5 3.6 7.8E-05 30.5 2.9 35 4-38 249-288 (521)
304 PRK04612 argD acetylornithine 73.7 3.9 8.4E-05 29.0 2.8 26 14-39 210-235 (408)
305 PRK06777 4-aminobutyrate amino 73.2 3.8 8.3E-05 29.0 2.7 26 14-39 221-246 (421)
306 PRK07036 hypothetical protein; 71.9 4.8 0.0001 29.1 3.0 32 8-39 233-268 (466)
307 PRK14809 histidinol-phosphate 71.8 4.7 0.0001 27.3 2.8 35 4-38 163-199 (357)
308 PRK07392 threonine-phosphate d 71.8 4.5 9.7E-05 27.5 2.7 34 4-38 157-190 (360)
309 PRK05664 threonine-phosphate d 71.7 5.6 0.00012 26.8 3.2 34 4-37 133-169 (330)
310 COG0160 GabT 4-aminobutyrate a 71.4 9.2 0.0002 28.1 4.3 26 14-39 245-270 (447)
311 PF03841 SelA: L-seryl-tRNA se 71.0 2.6 5.6E-05 30.3 1.4 26 13-38 158-183 (367)
312 PRK07495 4-aminobutyrate amino 70.9 4.6 0.0001 28.7 2.7 25 14-38 221-245 (425)
313 PRK06918 4-aminobutyrate amino 70.8 4.9 0.00011 28.6 2.8 26 14-39 242-267 (451)
314 PRK08088 4-aminobutyrate amino 70.2 5.2 0.00011 28.2 2.8 25 14-38 222-246 (425)
315 smart00642 Aamy Alpha-amylase 70.2 3.8 8.3E-05 25.7 2.0 29 7-35 65-93 (166)
316 PLN02672 methionine S-methyltr 69.8 4.2 9E-05 32.9 2.5 34 6-39 840-876 (1082)
317 PLN02450 1-aminocyclopropane-1 69.7 6.2 0.00013 28.4 3.1 35 4-38 200-237 (468)
318 PRK09792 4-aminobutyrate trans 69.6 6 0.00013 28.0 3.0 26 14-39 221-246 (421)
319 COG3033 TnaA Tryptophanase [Am 69.2 3.4 7.4E-05 30.4 1.7 33 10-42 204-237 (471)
320 PRK06209 glutamate-1-semialdeh 69.2 4.2 9.1E-05 28.9 2.2 28 11-38 203-230 (431)
321 KOG1402|consensus 69.2 5.6 0.00012 29.0 2.8 34 6-39 218-255 (427)
322 PRK05965 hypothetical protein; 69.2 6.8 0.00015 28.2 3.3 26 14-39 238-263 (459)
323 PRK07480 putative aminotransfe 68.9 7.1 0.00015 28.1 3.3 32 8-39 232-267 (456)
324 PLN02414 glycine dehydrogenase 68.9 6.1 0.00013 31.7 3.2 28 6-34 244-271 (993)
325 PRK09275 aspartate aminotransf 68.7 5.9 0.00013 29.5 2.9 35 4-38 250-289 (527)
326 PRK07482 hypothetical protein; 68.6 7.3 0.00016 28.1 3.3 26 14-39 243-268 (461)
327 TIGR01364 serC_1 phosphoserine 68.2 2.6 5.7E-05 29.2 1.0 33 2-39 137-169 (349)
328 PRK06058 4-aminobutyrate amino 68.2 7.3 0.00016 27.8 3.2 26 14-39 242-267 (443)
329 PF04309 G3P_antiterm: Glycero 67.1 8.6 0.00019 24.9 3.1 29 8-36 27-57 (175)
330 PRK07986 adenosylmethionine--8 66.9 6.7 0.00014 28.1 2.8 27 12-38 226-252 (428)
331 COG1954 GlpP Glycerol-3-phosph 66.4 5.6 0.00012 26.1 2.2 30 8-37 31-62 (181)
332 PRK00615 glutamate-1-semialdeh 66.2 6.6 0.00014 28.2 2.7 30 8-37 214-247 (433)
333 PRK09441 cytoplasmic alpha-amy 66.1 4.7 0.0001 29.1 1.9 30 5-34 74-103 (479)
334 COG1921 SelA Selenocysteine sy 65.4 12 0.00025 27.3 3.8 27 13-39 175-201 (395)
335 PRK08742 adenosylmethionine--8 64.9 9.5 0.00021 27.7 3.3 26 14-39 260-285 (472)
336 PRK07483 hypothetical protein; 64.5 7.4 0.00016 27.9 2.7 31 9-39 214-248 (443)
337 PRK06943 adenosylmethionine--8 64.4 9.6 0.00021 27.4 3.2 26 14-39 245-270 (453)
338 PRK06082 4-aminobutyrate amino 64.2 7.6 0.00016 28.0 2.7 26 14-39 251-276 (459)
339 PF05670 DUF814: Domain of unk 63.8 9 0.0002 21.7 2.5 23 18-40 24-46 (90)
340 PRK05639 4-aminobutyrate amino 63.8 7.7 0.00017 28.0 2.7 26 14-39 245-270 (457)
341 PRK05630 adenosylmethionine--8 63.5 8.3 0.00018 27.5 2.8 29 11-39 221-249 (422)
342 COG1982 LdcC Arginine/lysine/o 63.3 13 0.00028 28.2 3.8 41 4-44 174-214 (557)
343 PRK06149 hypothetical protein; 63.3 8.2 0.00018 30.5 2.9 32 8-39 757-792 (972)
344 PF00202 Aminotran_3: Aminotra 63.2 8.3 0.00018 26.5 2.7 26 14-39 200-225 (339)
345 COG0079 HisC Histidinol-phosph 63.1 8.9 0.00019 26.9 2.8 36 4-39 154-191 (356)
346 PRK08297 L-lysine aminotransfe 62.5 8.5 0.00019 27.6 2.7 28 12-39 246-273 (443)
347 PRK06173 adenosylmethionine--8 62.4 8.5 0.00019 27.5 2.7 24 14-37 230-253 (429)
348 cd00611 PSAT_like Phosphoserin 61.9 3.4 7.3E-05 28.4 0.5 32 3-39 146-177 (355)
349 PRK06959 putative threonine-ph 61.0 12 0.00026 25.5 3.1 35 4-38 139-176 (339)
350 PLN02974 adenosylmethionine-8- 60.8 12 0.00026 29.4 3.3 27 14-40 608-634 (817)
351 TIGR00508 bioA adenosylmethion 59.9 8.1 0.00017 27.5 2.2 28 11-38 228-255 (427)
352 COG1038 PycA Pyruvate carboxyl 58.5 3.5 7.6E-05 33.1 0.2 32 8-39 141-172 (1149)
353 PTZ00170 D-ribulose-5-phosphat 57.9 5.6 0.00012 26.2 1.1 27 13-39 20-47 (228)
354 PRK07030 adenosylmethionine--8 57.7 14 0.00031 26.7 3.2 26 14-39 238-263 (466)
355 PF02638 DUF187: Glycosyl hydr 57.2 11 0.00023 26.1 2.4 19 11-29 69-87 (311)
356 PRK07678 aminotransferase; Val 57.0 12 0.00025 26.9 2.6 26 14-39 236-261 (451)
357 PRK06938 diaminobutyrate--2-ox 56.8 13 0.00028 26.9 2.8 26 14-39 254-279 (464)
358 PLN02482 glutamate-1-semialdeh 55.7 14 0.00031 26.9 2.9 30 8-37 259-292 (474)
359 PRK01533 histidinol-phosphate 55.0 13 0.00028 25.7 2.5 35 4-38 160-196 (366)
360 PRK06916 adenosylmethionine--8 52.9 19 0.00041 26.0 3.1 26 14-39 247-272 (460)
361 PRK08637 hypothetical protein; 52.8 15 0.00032 25.3 2.5 36 4-39 155-198 (388)
362 PRK07481 hypothetical protein; 52.5 15 0.00033 26.3 2.6 26 14-39 236-261 (449)
363 PRK08057 cobalt-precorrin-6x r 52.4 16 0.00034 24.6 2.5 32 5-36 45-76 (248)
364 TIGR02402 trehalose_TreZ malto 51.9 11 0.00024 27.9 1.9 32 5-36 153-184 (542)
365 PRK10785 maltodextrin glucosid 51.8 11 0.00024 28.2 1.9 30 6-35 220-249 (598)
366 PRK06931 diaminobutyrate--2-ox 50.6 18 0.00039 26.1 2.7 26 14-39 248-273 (459)
367 PRK06917 hypothetical protein; 50.4 24 0.00051 25.4 3.3 26 14-39 223-248 (447)
368 COG1168 MalY Bifunctional PLP- 49.3 14 0.0003 26.9 1.9 26 11-36 177-207 (388)
369 COG4992 ArgD Ornithine/acetylo 49.2 19 0.00042 26.3 2.7 26 14-39 207-232 (404)
370 COG2870 RfaE ADP-heptose synth 48.3 17 0.00036 27.0 2.3 40 7-46 153-198 (467)
371 COG0366 AmyA Glycosidases [Car 47.6 14 0.0003 25.9 1.7 27 7-33 72-98 (505)
372 PRK06392 homoserine dehydrogen 46.4 33 0.00071 24.0 3.4 32 13-44 123-154 (326)
373 PLN02361 alpha-amylase 46.3 16 0.00034 26.4 1.9 29 6-34 70-98 (401)
374 PRK12313 glycogen branching en 45.7 16 0.00035 27.4 1.9 31 5-35 213-243 (633)
375 PLN00196 alpha-amylase; Provis 45.6 15 0.00033 26.5 1.8 29 6-34 86-114 (428)
376 PF14488 DUF4434: Domain of un 45.4 23 0.00051 22.3 2.4 25 7-31 60-84 (166)
377 PF02571 CbiJ: Precorrin-6x re 44.1 26 0.00056 23.6 2.6 32 5-36 46-77 (249)
378 COG0161 BioA Adenosylmethionin 43.7 26 0.00056 25.9 2.7 26 14-39 238-263 (449)
379 PRK10933 trehalose-6-phosphate 43.6 18 0.0004 26.9 1.9 30 6-35 75-104 (551)
380 TIGR02456 treS_nterm trehalose 42.9 17 0.00037 26.7 1.7 30 6-35 70-99 (539)
381 PRK05402 glycogen branching en 42.9 18 0.0004 27.7 1.9 31 5-35 308-338 (726)
382 PLN02681 proline dehydrogenase 42.6 17 0.00036 26.7 1.6 24 11-34 219-242 (455)
383 TIGR01515 branching_enzym alph 42.4 19 0.00042 27.0 1.9 31 5-35 199-229 (613)
384 PRK09505 malS alpha-amylase; R 40.8 21 0.00046 27.5 1.9 29 6-34 286-314 (683)
385 PF00834 Ribul_P_3_epim: Ribul 40.7 12 0.00025 24.4 0.5 28 11-38 11-39 (201)
386 PF06838 Met_gamma_lyase: Meth 40.0 19 0.0004 26.4 1.5 29 10-38 173-203 (403)
387 PHA02754 hypothetical protein; 39.7 35 0.00075 18.8 2.2 16 14-29 20-35 (67)
388 TIGR02403 trehalose_treC alpha 39.0 23 0.00051 26.2 1.9 29 6-34 69-97 (543)
389 PRK02610 histidinol-phosphate 38.7 36 0.00077 23.3 2.7 35 4-38 177-212 (374)
390 KOG2467|consensus 38.5 30 0.00066 25.6 2.3 34 3-36 195-228 (477)
391 KOG0259|consensus 38.2 68 0.0015 23.8 4.1 29 11-39 218-246 (447)
392 TIGR00789 flhB_rel flhB C-term 37.6 36 0.00078 19.3 2.2 24 15-38 30-53 (82)
393 PF07498 Rho_N: Rho terminatio 37.2 25 0.00054 17.4 1.3 15 13-27 6-20 (43)
394 KOG0634|consensus 36.8 28 0.00061 26.0 2.0 35 3-37 212-249 (472)
395 COG2052 Uncharacterized protei 36.8 38 0.00083 19.6 2.2 25 12-38 28-52 (89)
396 COG1167 ARO8 Transcriptional r 36.7 28 0.00061 25.1 2.0 35 5-39 237-274 (459)
397 COG1387 HIS2 Histidinol phosph 36.7 35 0.00077 22.5 2.3 25 5-29 166-190 (237)
398 PRK06349 homoserine dehydrogen 36.3 30 0.00066 24.8 2.1 36 13-48 111-146 (426)
399 KOG0369|consensus 35.7 37 0.00079 27.3 2.5 31 9-39 168-198 (1176)
400 smart00481 POLIIIAc DNA polyme 35.1 46 0.001 17.2 2.2 23 11-33 14-38 (67)
401 PRK06148 hypothetical protein; 34.6 46 0.001 26.6 3.0 31 9-39 798-832 (1013)
402 TIGR02100 glgX_debranch glycog 34.5 28 0.0006 26.8 1.7 27 9-35 242-268 (688)
403 COG0296 GlgB 1,4-alpha-glucan 34.1 33 0.00072 26.4 2.0 36 3-38 205-240 (628)
404 COG3964 Predicted amidohydrola 34.1 60 0.0013 23.5 3.2 48 14-63 230-277 (386)
405 PF02347 GDC-P: Glycine cleava 33.1 53 0.0011 24.1 2.9 25 6-30 207-231 (429)
406 KOG1405|consensus 32.6 37 0.0008 25.2 2.0 36 4-39 284-319 (484)
407 PLN02784 alpha-amylase 31.5 36 0.00078 27.4 1.9 30 5-34 561-590 (894)
408 PRK03705 glycogen debranching 30.5 40 0.00088 25.8 2.0 26 9-34 239-264 (658)
409 PF11848 DUF3368: Domain of un 30.0 42 0.00092 16.8 1.5 21 8-28 15-35 (48)
410 cd01305 archeal_chlorohydrolas 29.6 66 0.0014 20.9 2.7 20 14-33 127-148 (263)
411 TIGR01365 serC_2 phosphoserine 29.5 18 0.00039 25.7 0.0 32 2-35 134-165 (374)
412 PF07862 Nif11: Nitrogen fixat 29.5 47 0.001 16.5 1.6 19 11-29 26-44 (49)
413 PRK07046 aminotransferase; Val 29.1 58 0.0013 23.5 2.6 22 14-35 241-262 (453)
414 PF12481 DUF3700: Aluminium in 29.1 83 0.0018 21.4 3.1 42 12-57 171-218 (228)
415 PRK06270 homoserine dehydrogen 28.8 54 0.0012 22.7 2.3 35 14-48 133-167 (341)
416 PF02603 Hpr_kinase_N: HPr Ser 28.5 48 0.001 19.8 1.8 18 11-28 91-108 (127)
417 PF14871 GHL6: Hypothetical gl 28.0 58 0.0013 19.8 2.1 18 11-28 43-60 (132)
418 PF07085 DRTGG: DRTGG domain; 27.0 53 0.0011 18.6 1.7 22 7-28 67-88 (105)
419 TIGR00461 gcvP glycine dehydro 27.0 84 0.0018 25.4 3.2 27 6-32 204-230 (939)
420 PRK14057 epimerase; Provisiona 26.9 59 0.0013 22.2 2.1 26 14-39 34-60 (254)
421 COG4100 Cystathionine beta-lya 26.2 43 0.00094 24.3 1.4 29 10-38 184-214 (416)
422 PRK08745 ribulose-phosphate 3- 26.0 37 0.00079 22.5 1.0 26 14-39 18-44 (223)
423 TIGR02104 pulA_typeI pullulana 25.7 45 0.00098 25.0 1.5 26 10-35 227-252 (605)
424 PF13378 MR_MLE_C: Enolase C-t 25.3 40 0.00086 19.1 1.0 23 8-30 29-53 (111)
425 PF00150 Cellulase: Cellulase 25.2 86 0.0019 20.0 2.6 25 9-33 59-83 (281)
426 PRK14706 glycogen branching en 25.1 55 0.0012 25.0 1.9 32 5-36 210-241 (639)
427 COG2382 Fes Enterochelin ester 25.1 72 0.0016 22.5 2.4 35 2-36 244-278 (299)
428 PF11020 DUF2610: Domain of un 24.9 25 0.00053 20.4 0.0 25 4-28 44-68 (82)
429 KOG3843|consensus 24.7 42 0.00091 24.1 1.1 27 10-36 172-198 (432)
430 PF12816 Vps8: Golgi CORVET co 24.5 60 0.0013 21.0 1.8 15 13-27 54-68 (196)
431 PF03460 NIR_SIR_ferr: Nitrite 24.4 1.1E+02 0.0023 15.9 2.5 28 12-39 24-52 (69)
432 PLN03244 alpha-amylase; Provis 24.3 60 0.0013 26.1 2.0 33 3-35 432-464 (872)
433 PF00289 CPSase_L_chain: Carba 24.2 39 0.00084 19.9 0.8 29 10-42 59-87 (110)
434 PRK08374 homoserine dehydrogen 24.1 1.2E+02 0.0025 21.2 3.2 36 13-48 129-164 (336)
435 KOG1358|consensus 24.0 75 0.0016 23.7 2.3 33 7-39 245-277 (467)
436 PF01408 GFO_IDH_MocA: Oxidore 24.0 46 0.001 18.6 1.1 21 10-30 98-118 (120)
437 PF01619 Pro_dh: Proline dehyd 23.9 88 0.0019 21.4 2.6 24 11-34 91-114 (313)
438 KOG1404|consensus 23.8 84 0.0018 23.4 2.5 32 9-40 226-261 (442)
439 KOG0471|consensus 23.7 52 0.0011 24.6 1.5 29 6-34 82-110 (545)
440 PRK14705 glycogen branching en 23.3 61 0.0013 26.9 1.9 34 4-37 807-840 (1224)
441 PF01120 Alpha_L_fucos: Alpha- 23.2 60 0.0013 22.6 1.7 19 10-28 136-154 (346)
442 PF04025 DUF370: Domain of unk 22.7 98 0.0021 17.4 2.2 23 13-37 25-47 (73)
443 COG0460 ThrA Homoserine dehydr 22.2 1.2E+02 0.0027 21.6 3.1 36 14-49 121-156 (333)
444 PF02037 SAP: SAP domain; Int 22.2 98 0.0021 14.4 1.9 15 14-28 6-20 (35)
445 PRK05985 cytosine deaminase; P 22.0 70 0.0015 22.1 1.8 22 12-33 191-214 (391)
446 KOG1412|consensus 21.5 1E+02 0.0022 22.5 2.6 34 5-39 188-225 (410)
447 COG2099 CobK Precorrin-6x redu 21.1 1.1E+02 0.0025 21.1 2.7 31 6-36 47-77 (257)
448 PLN02452 phosphoserine transam 21.1 38 0.00081 23.9 0.3 31 3-39 153-184 (365)
449 COG0011 Uncharacterized conser 21.1 52 0.0011 19.5 0.9 23 2-24 41-63 (100)
450 TIGR00715 precor6x_red precorr 21.0 77 0.0017 21.4 1.8 28 8-36 49-76 (256)
451 PLN02447 1,4-alpha-glucan-bran 21.0 75 0.0016 25.1 2.0 31 5-35 293-323 (758)
452 TIGR02401 trehalose_TreY malto 20.9 75 0.0016 25.4 1.9 31 5-35 58-88 (825)
453 PRK08418 chlorohydrolase; Prov 20.7 75 0.0016 22.4 1.8 27 8-34 186-212 (408)
454 PF01976 DUF116: Protein of un 20.6 1.2E+02 0.0026 19.1 2.5 17 13-29 74-90 (158)
455 smart00812 Alpha_L_fucos Alpha 20.5 89 0.0019 22.4 2.1 19 10-28 126-144 (384)
456 PRK14511 maltooligosyl trehalo 20.1 79 0.0017 25.4 1.9 34 5-38 62-95 (879)
457 PF05913 DUF871: Bacterial pro 20.0 72 0.0016 22.7 1.6 30 10-39 45-74 (357)
No 1
>PLN02590 probable tyrosine decarboxylase
Probab=99.89 E-value=3.3e-24 Score=155.13 Aligned_cols=62 Identities=34% Similarity=0.627 Sum_probs=60.9
Q ss_pred CCccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030 1 MFPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 1 at~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h 62 (63)
||+|||.+|++|||++|+++|+++++|+||||||||+++++++++++++|+++||||++|||
T Consensus 293 aTaGTT~tGaiDpl~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~H 354 (539)
T PLN02590 293 ATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAH 354 (539)
T ss_pred EEeCCCCCcccCCHHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECch
Confidence 68999999999999999999999999999999999999999999999999999999999999
No 2
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=99.88 E-value=1.7e-23 Score=145.34 Aligned_cols=62 Identities=55% Similarity=0.920 Sum_probs=57.5
Q ss_pred CCccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030 1 MFPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 1 at~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h 62 (63)
+|+|||.+|++||+++|+++|+++++|+||||||||+++++++++++.++++++|||++|+|
T Consensus 200 at~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~H 261 (373)
T PF00282_consen 200 ATAGTTNTGAIDPLEEIADICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPH 261 (373)
T ss_dssp EEBS-TTTSBB-SHHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETT
T ss_pred ccCCCcccccccCHHHHhhhccccceeeeecccccccccccccccccccccccccccccchh
Confidence 58999999999999999999999999999999999999999999999999999999999999
No 3
>PLN02880 tyrosine decarboxylase
Probab=99.86 E-value=8.8e-23 Score=145.81 Aligned_cols=62 Identities=32% Similarity=0.564 Sum_probs=60.7
Q ss_pred CCccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030 1 MFPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 1 at~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h 62 (63)
||+|||.+|++||+++|+++|+++|+|+||||||||+++++++++++++|++++|||++|+|
T Consensus 245 ataGTT~~GaiDpl~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~H 306 (490)
T PLN02880 245 ATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAH 306 (490)
T ss_pred EecCCCcCcccCcHHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECch
Confidence 68999999999999999999999999999999999999999999999999999999999999
No 4
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=99.84 E-value=1.4e-21 Score=139.32 Aligned_cols=62 Identities=39% Similarity=0.501 Sum_probs=58.2
Q ss_pred CCccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhh-hCCCCCCceeEecCC
Q psy14030 1 MFPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHL-LTGIERPQNRSEDTP 62 (63)
Q Consensus 1 at~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~-~~~i~~adSi~~d~h 62 (63)
+|+|||++|.+|||++|+++|++|++|+|||||+||+.+++.+.+.. ..+++++|||++|+|
T Consensus 213 ~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~H 275 (460)
T COG0076 213 GTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGH 275 (460)
T ss_pred EEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCccchhhcCCCCceEEEECcc
Confidence 58999999999999999999999999999999999999988777766 579999999999999
No 5
>KOG0629|consensus
Probab=99.84 E-value=1.4e-21 Score=139.28 Aligned_cols=62 Identities=60% Similarity=1.023 Sum_probs=61.0
Q ss_pred CCccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030 1 MFPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 1 at~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h 62 (63)
||+|||..|++||++.|+++|++|++|+||||||||..++++++|+++.|+|+++|++|+||
T Consensus 259 aTaGTTV~GAFDdL~~iadiC~k~~lWmHvDAAwGGglLmS~k~R~kl~Giera~SvtwnpH 320 (510)
T KOG0629|consen 259 ATAGTTVLGAFDDLNGIADICEKHKLWMHVDAAWGGGLLMSRKHRHKLTGIERANSVTWNPH 320 (510)
T ss_pred ecCCceeeeccCcHHHHHHHHHhcCEEEEeecccccccccChhhHhhccCccccCceeecHH
Confidence 69999999999999999999999999999999999999999999999999999999999999
No 6
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=99.80 E-value=1.9e-20 Score=137.25 Aligned_cols=62 Identities=29% Similarity=0.393 Sum_probs=54.1
Q ss_pred CCccccceeeeeCHHHHHHHH---HHcCc--EEEeccccccee--eec------------------------------cc
Q psy14030 1 MFPGTTVLGAFDPIPAIADIC---AEYDM--WLHVDAAWGGGA--LVS------------------------------RK 43 (63)
Q Consensus 1 at~Gtt~tG~id~i~~i~~i~---~~~~~--~~HvDaa~gg~~--~~~------------------------------~~ 43 (63)
||+|||++|+|||+++|+++| +++++ |+||||||||++ +++ ++
T Consensus 284 ataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~ 363 (608)
T TIGR03811 284 GVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISRE 363 (608)
T ss_pred EEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccccccccccccccHh
Confidence 689999999999999999999 56787 799999999986 222 35
Q ss_pred chhhhCCCCCCceeEecCC
Q psy14030 44 HRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 44 ~~~~~~~i~~adSi~~d~h 62 (63)
+++.++++++||||++|||
T Consensus 364 ~~~~l~gle~ADSItvDpH 382 (608)
T TIGR03811 364 VYNAYKAISEAESVTIDPH 382 (608)
T ss_pred HHHHHhcCcCceEEEeCcc
Confidence 6778899999999999999
No 7
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=99.80 E-value=1.8e-20 Score=135.19 Aligned_cols=62 Identities=47% Similarity=0.749 Sum_probs=59.9
Q ss_pred CCccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030 1 MFPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 1 at~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h 62 (63)
+|+|||++|++||+++|+++|+++++|+||||||||+.++++++++++++++++|||++|+|
T Consensus 271 ataGtt~tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~H 332 (522)
T TIGR03799 271 GVAGTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAH 332 (522)
T ss_pred EEecCcCCCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChh
Confidence 47899999999999999999999999999999999999999999999999999999999999
No 8
>PLN02263 serine decarboxylase
Probab=99.79 E-value=3.6e-20 Score=132.74 Aligned_cols=62 Identities=24% Similarity=0.173 Sum_probs=55.3
Q ss_pred CCccccceeeeeCHHHHHHHHHHcCc-----EEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030 1 MFPGTTVLGAFDPIPAIADICAEYDM-----WLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 1 at~Gtt~tG~id~i~~i~~i~~~~~~-----~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h 62 (63)
+|+|||.+|++|||++|.++|+++|+ |+||||||||+++++.+..+.+.+.+.+|||++|+|
T Consensus 234 ataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~~df~~~vDSIsvD~H 300 (470)
T PLN02263 234 VNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFKKPIGSVSVSGH 300 (470)
T ss_pred EEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccccccCCCcCccEEEECCc
Confidence 58999999999999999999999986 999999999998855544556777788999999999
No 9
>KOG0628|consensus
Probab=99.76 E-value=1.6e-19 Score=129.34 Aligned_cols=62 Identities=35% Similarity=0.606 Sum_probs=60.9
Q ss_pred CCccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030 1 MFPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 1 at~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h 62 (63)
||.|||.+.++|++.+|..+|+++++|+||||||+|.+.+||+++.+++|+|.|||++.++|
T Consensus 241 at~GTT~~ca~D~l~elg~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~h 302 (511)
T KOG0628|consen 241 ATLGTTSSCAFDELEELGPVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPH 302 (511)
T ss_pred EeecCccccccccHHHhcchhhhcCEEEEeehhhccccccCHHHHHHhhcchhhccccCChh
Confidence 68999999999999999999999999999999999999999999999999999999999998
No 10
>PLN03032 serine decarboxylase; Provisional
Probab=99.69 E-value=1.4e-17 Score=116.29 Aligned_cols=62 Identities=26% Similarity=0.178 Sum_probs=51.9
Q ss_pred CCccccceeeeeCHHHHHHHHHHcC-----cEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030 1 MFPGTTVLGAFDPIPAIADICAEYD-----MWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 1 at~Gtt~tG~id~i~~i~~i~~~~~-----~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h 62 (63)
+++|||++|++||+++|+++|++++ +|+||||||||+.+.+.+..+.+...+.+|||++|+|
T Consensus 167 ~tagtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~~~vDSis~s~H 233 (374)
T PLN03032 167 VNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRKPIGSVSVSGH 233 (374)
T ss_pred EEecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCCCcCCcEEEECcc
Confidence 3689999999999999999999996 6999999999988754333344445567999999999
No 11
>PRK02769 histidine decarboxylase; Provisional
Probab=99.67 E-value=4.4e-17 Score=113.62 Aligned_cols=62 Identities=24% Similarity=0.238 Sum_probs=54.3
Q ss_pred CCccccceeeeeCHHHHHHHHHHcC---cEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030 1 MFPGTTVLGAFDPIPAIADICAEYD---MWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 1 at~Gtt~tG~id~i~~i~~i~~~~~---~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h 62 (63)
+|+|||++|++||+++|+++|++++ +|+|||+||+++.+++.+.++.+...+.+|||++|+|
T Consensus 166 ~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~~vDsis~s~H 230 (380)
T PRK02769 166 ANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFADGIDSIAISGH 230 (380)
T ss_pred EEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEecccceeecccCccccCCccCCCCEEEECCc
Confidence 4789999999999999999999998 7999999999988876655555555568999999999
No 12
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=99.67 E-value=2.3e-17 Score=116.77 Aligned_cols=61 Identities=30% Similarity=0.369 Sum_probs=54.4
Q ss_pred CCccccceeeeeCHHHHHHHHHHc------CcEEEecccccceee--ecccchhhhCCCCCCceeEecCC
Q psy14030 1 MFPGTTVLGAFDPIPAIADICAEY------DMWLHVDAAWGGGAL--VSRKHRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 1 at~Gtt~tG~id~i~~i~~i~~~~------~~~~HvDaa~gg~~~--~~~~~~~~~~~i~~adSi~~d~h 62 (63)
+|+|||++|++||+++|+++|+++ ++|+|||+||+|+++ ..++.+..+. ++++||+++|+|
T Consensus 192 ~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~-~~~~DSis~s~H 260 (431)
T TIGR01788 192 CILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFR-LPRVKSINVSGH 260 (431)
T ss_pred EEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcC-CCCceEEEECch
Confidence 478999999999999999999999 999999999999887 3566666664 899999999999
No 13
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=99.24 E-value=5.7e-12 Score=84.14 Aligned_cols=61 Identities=51% Similarity=0.746 Sum_probs=52.1
Q ss_pred CccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030 2 FPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 2 t~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h 62 (63)
+.++|.+|.++|+++|.++|+++++|+|+|++|+.+.......+....+++.+||+++++|
T Consensus 155 ~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~ 215 (345)
T cd06450 155 TAGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPH 215 (345)
T ss_pred ecccCCCCCCCCHHHHHHHHHHhCCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchh
Confidence 5688999999999999999999999999999999887755544444456778999999987
No 14
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=99.07 E-value=1.4e-10 Score=82.07 Aligned_cols=54 Identities=24% Similarity=0.342 Sum_probs=44.5
Q ss_pred ccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030 3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h 62 (63)
..|||+|+||||+||.++|+++++++|+||+|+..-....-.. + .+|.+++|+|
T Consensus 149 ~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa~Gkipi~~~~-----~-~vD~ls~SaH 202 (386)
T COG1104 149 HANNETGTIQPIAEIGEICKERGILFHVDAVQAVGKIPIDLEE-----L-GVDLLSFSAH 202 (386)
T ss_pred ecccCeeecccHHHHHHHHHHcCCeEEEehhhhcCceeccccc-----c-CcceEEeehh
Confidence 4799999999999999999999999999999997666443111 1 2789999888
No 15
>KOG1383|consensus
Probab=98.96 E-value=5.7e-10 Score=80.60 Aligned_cols=61 Identities=21% Similarity=0.211 Sum_probs=52.7
Q ss_pred CCccccceeeeeCHHHHHHHHHH-cCcEEEecccccceeee---cccchhhhCCCCCCceeEecCC
Q psy14030 1 MFPGTTVLGAFDPIPAIADICAE-YDMWLHVDAAWGGGALV---SRKHRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 1 at~Gtt~tG~id~i~~i~~i~~~-~~~~~HvDaa~gg~~~~---~~~~~~~~~~i~~adSi~~d~h 62 (63)
+.+|++.+|.+||+++|.+++.| |++.+|+|++.|||+.. .++.++.+ +++.+.||+.|+|
T Consensus 224 ~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdF-r~p~V~Sisa~~H 288 (491)
T KOG1383|consen 224 GSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDF-RVPGVTSISADGH 288 (491)
T ss_pred EEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccccccccCcccccc-CCCCceeEeeccc
Confidence 35899999999999999999999 99999999999999984 23334444 7899999999998
No 16
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=98.93 E-value=9.9e-10 Score=73.99 Aligned_cols=61 Identities=33% Similarity=0.500 Sum_probs=46.5
Q ss_pred CccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeec-ccchhhhCCCCCCceeEecCC
Q psy14030 2 FPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVS-RKHRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 2 t~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~-~~~~~~~~~i~~adSi~~d~h 62 (63)
+.++|++|.++|+++|.++|+++++++|+|++|+++.+.. ++....-.....+||+++++|
T Consensus 158 ~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~ 219 (371)
T PRK13520 158 IAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPH 219 (371)
T ss_pred EcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCc
Confidence 3578999999999999999999999999999999876522 211111112456899999987
No 17
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=98.82 E-value=4.6e-09 Score=75.25 Aligned_cols=57 Identities=30% Similarity=0.345 Sum_probs=42.6
Q ss_pred ccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhh-CCC--CCCceeEecCC
Q psy14030 3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLL-TGI--ERPQNRSEDTP 62 (63)
Q Consensus 3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~-~~i--~~adSi~~d~h 62 (63)
.++...|..||+++|+++|+++++|+|+|+|||... +.+.+.. +++ .++|+++.|+|
T Consensus 213 p~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~---~~~~~~~~~g~~~Grad~vv~s~h 272 (444)
T TIGR03531 213 TSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQS---NKYMELINKAIKVGRVDAVVSSTD 272 (444)
T ss_pred CCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcC---hhhhhhhhccccccCCCeEEEeCc
Confidence 344556689999999999999999999999999633 2222222 233 36899999987
No 18
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=98.78 E-value=5.3e-09 Score=70.63 Aligned_cols=60 Identities=33% Similarity=0.431 Sum_probs=45.0
Q ss_pred ccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccc----hhhhCCCCCCceeEecCC
Q psy14030 3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKH----RHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~----~~~~~~i~~adSi~~d~h 62 (63)
.++|.+|.++|+++|.++|+++++|+|+|+||+++....... .........+||+++|+|
T Consensus 161 ~~~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~ 224 (373)
T TIGR03812 161 AGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPH 224 (373)
T ss_pred CCCCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECcc
Confidence 468999999999999999999999999999999775422110 011112346799999887
No 19
>PLN02651 cysteine desulfurase
Probab=98.48 E-value=2.1e-07 Score=63.47 Aligned_cols=54 Identities=20% Similarity=0.343 Sum_probs=42.5
Q ss_pred ccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030 3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h 62 (63)
..+++||.++|+++|.++|+++|+++|+|++|+....... +..+ .+|.+.+++|
T Consensus 146 ~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~~~~~-----~~~~-~~D~~~~s~h 199 (364)
T PLN02651 146 AVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGKIPVD-----VDDL-GVDLMSISGH 199 (364)
T ss_pred CCCCCceecccHHHHHHHHHHcCCEEEEEcchhhCCcccC-----cccC-CCCEEEechh
Confidence 4578999999999999999999999999999986544322 1122 2688888877
No 20
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=98.29 E-value=1.1e-06 Score=60.83 Aligned_cols=54 Identities=26% Similarity=0.349 Sum_probs=42.5
Q ss_pred ccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030 3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h 62 (63)
..++++|.++|+++|.++|+++++++|+|++|+....... +.+ ..+|.+++++|
T Consensus 150 ~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~~~~-----~~~-~~~D~~~~s~~ 203 (402)
T TIGR02006 150 HVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKIPIN-----VNE-LKVDLMSISGH 203 (402)
T ss_pred CCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCCcccC-----ccc-cCCCEEEEehh
Confidence 4578899999999999999999999999999986544221 112 25788888876
No 21
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=98.27 E-value=2e-06 Score=51.20 Aligned_cols=57 Identities=30% Similarity=0.290 Sum_probs=44.9
Q ss_pred ccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030 3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h 62 (63)
..++.+|...|+++|+++|+++++++++|.+++++........ .....+|.++.++|
T Consensus 100 ~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~---~~~~~~d~~~~s~~ 156 (170)
T cd01494 100 PNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVL---IPEGGADVVTFSLH 156 (170)
T ss_pred cCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccc---cccccCCEEEEEcc
Confidence 4577899999999999999999999999999998777543311 12345788888776
No 22
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=98.20 E-value=2.2e-06 Score=58.06 Aligned_cols=54 Identities=20% Similarity=0.219 Sum_probs=40.9
Q ss_pred ccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030 3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h 62 (63)
..+|.+|.++|+++|.++|+++++++|+|++++......+ +.. ..+|++++++|
T Consensus 147 ~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~-----~~~-~~~d~~~~s~~ 200 (373)
T cd06453 147 HVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHMPVD-----VQD-LGCDFLAFSGH 200 (373)
T ss_pred CcccccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCceeee-----ccc-cCCCEEEeccc
Confidence 3577899999999999999999999999999975443211 111 14678888766
No 23
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=98.20 E-value=2e-06 Score=58.18 Aligned_cols=54 Identities=26% Similarity=0.308 Sum_probs=41.2
Q ss_pred ccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030 3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h 62 (63)
..++.||.+.|+++|.++|+++++++++|++++....... +. -..+|.+..++|
T Consensus 146 ~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~~~~-----~~-~~~~D~~~~s~~ 199 (353)
T TIGR03235 146 HVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKITVD-----LS-ADRIDLISCSGH 199 (353)
T ss_pred cccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCcccc-----cc-ccCCCEEEeehh
Confidence 4678999999999999999999999999999886554322 11 124677777665
No 24
>KOG1549|consensus
Probab=98.14 E-value=1.1e-06 Score=63.14 Aligned_cols=36 Identities=33% Similarity=0.574 Sum_probs=32.7
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
-|+++|+++|++||.++|+++++.+|+||||+....
T Consensus 190 Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~i 225 (428)
T KOG1549|consen 190 VNNEIGVLQPVKEIVKICREEGVQVHVDAAQAVGKI 225 (428)
T ss_pred cccCccccccHHHHHHHhCcCCcEEEeehhhhcCCc
Confidence 478999999999999999999999999999986543
No 25
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=98.13 E-value=3.7e-06 Score=56.85 Aligned_cols=54 Identities=19% Similarity=0.220 Sum_probs=41.3
Q ss_pred ccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030 3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h 62 (63)
..+|.||.+.|+++|.++|+++++++++|++++....... + .-..+|.+.+++|
T Consensus 145 ~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~~g~~~~~-----~-~~~~~D~~~~s~~ 198 (376)
T TIGR01977 145 HASNVTGTILPIEEIGELAQENGIFFILDAAQTAGVIPID-----M-TELAIDMLAFTGH 198 (376)
T ss_pred CCCCCccccCCHHHHHHHHHHcCCEEEEEhhhccCccCCC-----c-hhcCCCEEEeccc
Confidence 4678999999999999999999999999999976544221 0 1134677777765
No 26
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=98.12 E-value=3.5e-06 Score=56.35 Aligned_cols=56 Identities=14% Similarity=0.044 Sum_probs=42.4
Q ss_pred cceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030 6 TVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h 62 (63)
|.+|.+.|+++|+++|+++++++++|.||+..+.+.+..+... ....+|-+..++|
T Consensus 164 ~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~-~~~~~div~~S~h 219 (294)
T cd00615 164 TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSA-AMAGADIVVQSTH 219 (294)
T ss_pred CCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcch-hhcCCcEEEEchh
Confidence 5689999999999999999999999999997665554333222 1235677777766
No 27
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=98.12 E-value=4.1e-06 Score=57.08 Aligned_cols=53 Identities=23% Similarity=0.209 Sum_probs=40.2
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h 62 (63)
.++.+|.+.|+++|.++|+++|+++|+|++|+....... +.. ..+|.+.+++|
T Consensus 145 ~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~~~~~-----~~~-~~~D~~~~s~~ 197 (379)
T TIGR03402 145 ANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGKIPID-----LKE-MNIDMLSLSGH 197 (379)
T ss_pred ccCCeeecccHHHHHHHHHHcCCEEEEECcccccccccC-----ccc-CCCCEEEEcHH
Confidence 578999999999999999999999999999975432111 111 24677777765
No 28
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=98.10 E-value=4.5e-06 Score=57.05 Aligned_cols=54 Identities=22% Similarity=0.224 Sum_probs=40.6
Q ss_pred ccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030 3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h 62 (63)
..+|.||.+.|+++|.++++++|+++|+|++|+....... + .-..+|.+..++|
T Consensus 148 ~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~~~~-----~-~~~~~D~~~~s~~ 201 (382)
T TIGR03403 148 WANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKIPVD-----V-QKAGVDFLSFSAH 201 (382)
T ss_pred cccCCCccccCHHHHHHHHHHcCCEEEEechhhcCCCccC-----c-cccCCCEEEEcch
Confidence 3578999999999999999999999999999885433211 1 1123677777765
No 29
>PRK14012 cysteine desulfurase; Provisional
Probab=98.05 E-value=5.2e-06 Score=57.40 Aligned_cols=54 Identities=28% Similarity=0.330 Sum_probs=41.0
Q ss_pred ccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030 3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h 62 (63)
..+++||.+.|+++|.++|+++++++++|++|+......+ ... ..+|.+++++|
T Consensus 152 ~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~~~~-----~~~-~~~D~~~~s~~ 205 (404)
T PRK14012 152 HVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKVPID-----LSK-LKVDLMSFSAH 205 (404)
T ss_pred CcCCCccchhhHHHHHHHHHHcCCEEEEEcchhcCCcccC-----ccc-CCCCEEEEehh
Confidence 3578899999999999999999999999999986444221 111 23677777766
No 30
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=97.95 E-value=1.3e-05 Score=55.33 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=31.8
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.++++|.++|+++|.++|+++|+++|+|++|+...
T Consensus 167 ~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~ 201 (387)
T PRK09331 167 VDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGR 201 (387)
T ss_pred CCCCCcccccHHHHHHHHHHcCCEEEEECCcccCC
Confidence 46789999999999999999999999999998644
No 31
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=97.95 E-value=1.3e-05 Score=56.77 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=43.5
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h 62 (63)
+.+++|.+.|+++|.++|+++|+++|||++|+.......-... .+..+|-++.++|
T Consensus 189 ~~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~---~~~~~D~l~~S~h 244 (452)
T PTZ00094 189 GASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPS---PFPYADVVTTTTH 244 (452)
T ss_pred eCCCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCC---CCCCCcEEEcCCc
Confidence 4678999999999999999999999999999876664321111 1336788888877
No 32
>PRK02948 cysteine desulfurase; Provisional
Probab=97.94 E-value=1.2e-05 Score=54.78 Aligned_cols=35 Identities=23% Similarity=0.481 Sum_probs=31.5
Q ss_pred ccccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030 3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~ 37 (63)
..+|+||.+.|+++|.++|+++++++|+|+++...
T Consensus 146 ~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g 180 (381)
T PRK02948 146 HANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFG 180 (381)
T ss_pred CCcCCcEeehhHHHHHHHHHHcCCEEEEEChhhcc
Confidence 46899999999999999999999999999987643
No 33
>PRK05367 glycine dehydrogenase; Provisional
Probab=97.94 E-value=1.3e-05 Score=62.03 Aligned_cols=56 Identities=14% Similarity=-0.064 Sum_probs=41.6
Q ss_pred CccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030 2 FPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 2 t~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h 62 (63)
|.+++..+..+|+++|+++++++|+|+|||+|+++....... .+-..+|++..|+|
T Consensus 647 t~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~~-----pg~~GADi~~~s~H 702 (954)
T PRK05367 647 TYPSTHGVFEETIREICEIVHEHGGQVYLDGANMNAQVGLAR-----PGDIGADVSHLNLH 702 (954)
T ss_pred EcCCCCeeecCCHHHHHHHHHHcCCEEEEECcChhhccCCCC-----hhhcCCCEEEecCc
Confidence 456776333589999999999999999999999755443221 13345899999887
No 34
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=97.89 E-value=1.9e-05 Score=54.15 Aligned_cols=54 Identities=17% Similarity=0.153 Sum_probs=39.9
Q ss_pred ccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030 3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h 62 (63)
..++.+|.+.|+++|.++|+++++++++|++|+....... +... .+|.+..++|
T Consensus 167 ~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~~~~-----~~~~-~~d~~~~s~~ 220 (403)
T TIGR01979 167 HVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVD-----VQAL-DCDFYVFSGH 220 (403)
T ss_pred cccccccccCCHHHHHHHHHHcCCEEEEEchhhcCccccC-----cccc-CCCEEEEecc
Confidence 4578999999999999999999999999999975433211 1111 3566666665
No 35
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=97.80 E-value=3e-05 Score=53.60 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=32.4
Q ss_pred ccccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
..++.||.+.|+++|.++|+++++++++|++|+...
T Consensus 172 ~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~ 207 (406)
T PRK09295 172 HVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMH 207 (406)
T ss_pred cchhcccccCCHHHHHHHHHHcCCEEEEEcccccCc
Confidence 357899999999999999999999999999997654
No 36
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=97.78 E-value=5.1e-05 Score=52.61 Aligned_cols=37 Identities=16% Similarity=0.091 Sum_probs=33.4
Q ss_pred ccccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.-++++|.+.|+++|.++|+++|+++++|++|+....
T Consensus 179 ~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~ 215 (406)
T TIGR01814 179 GVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNV 215 (406)
T ss_pred ccccccceecCHHHHHHHHHHcCCEEEEEcccccCCc
Confidence 3578899999999999999999999999999987655
No 37
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=97.71 E-value=4.8e-05 Score=51.84 Aligned_cols=37 Identities=35% Similarity=0.469 Sum_probs=32.3
Q ss_pred ccccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.-.+.+|.+.|+++|.++|+++++++++|++|+....
T Consensus 147 ~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~ 183 (371)
T PF00266_consen 147 HVENSTGVRNPIEEIAKLAHEYGALLVVDAAQSAGCV 183 (371)
T ss_dssp SBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTS
T ss_pred cccccccEEeeeceehhhhhccCCceeEechhccccc
Confidence 4568899999999999999999999999999987655
No 38
>PRK07179 hypothetical protein; Provisional
Probab=97.70 E-value=5.3e-05 Score=52.44 Aligned_cols=34 Identities=29% Similarity=0.441 Sum_probs=31.0
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~ 37 (63)
-++++|.+.|+++|.++|+++++++++|.+|+..
T Consensus 190 v~n~tG~i~pl~~I~~l~~~~~~~livDea~~~g 223 (407)
T PRK07179 190 VYSTTGTIAPLADIVDIAEEFGCVLVVDESHSLG 223 (407)
T ss_pred CCCCCCccccHHHHHHHHHHcCCEEEEECccccc
Confidence 3678999999999999999999999999999743
No 39
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=6.6e-05 Score=53.28 Aligned_cols=38 Identities=32% Similarity=0.432 Sum_probs=33.9
Q ss_pred CccccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 2 FPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 2 t~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
+.-++.||.+.|+++|.++|+++|+|+-||++|+....
T Consensus 169 s~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~ 206 (405)
T COG0520 169 SHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHL 206 (405)
T ss_pred ECccccccccchHHHHHHHHHHcCCEEEEECccccCcc
Confidence 34578999999999999999999999999999987554
No 40
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=97.67 E-value=4e-05 Score=52.62 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=31.2
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~ 37 (63)
-++++|.+.|+++|.++|+++++++|+|.+|+..
T Consensus 152 v~s~~G~i~pl~eI~~l~~~~~~~livDea~~~G 185 (370)
T PRK05937 152 VYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMG 185 (370)
T ss_pred CCCCCCCccCHHHHHHHHHHcCCEEEEECCcccc
Confidence 4678999999999999999999999999999843
No 41
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=97.67 E-value=7e-05 Score=51.11 Aligned_cols=50 Identities=20% Similarity=0.145 Sum_probs=36.5
Q ss_pred ceeeeeCH-HHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030 7 VLGAFDPI-PAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 7 ~tG~id~i-~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h 62 (63)
.+|.+.|+ ++|+++|+++++++++|++++....+.+. +...+|.+..++|
T Consensus 170 ~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~------~~~~~d~~~~s~~ 220 (398)
T cd00613 170 TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKPP------GEYGADIVVGNLQ 220 (398)
T ss_pred CCceecchHHHHHHHHHhcCCEEEEEeccccccCCCCh------HHcCCCEEEeecc
Confidence 57999885 99999999999999999988654332221 1113677777766
No 42
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=97.60 E-value=6.7e-05 Score=53.79 Aligned_cols=51 Identities=29% Similarity=0.161 Sum_probs=38.5
Q ss_pred ceeee-eCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030 7 VLGAF-DPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 7 ~tG~i-d~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h 62 (63)
.+|.+ +|+++|+++|++++.+++||+|+....+. ... .+-..+|++..|+|
T Consensus 219 ~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g--~~~---~~~~GaD~~~~~~h 270 (481)
T PRK04366 219 TLGLFERNILEIAEIVHEAGGLLYYDGANLNAILG--KAR---PGDMGFDVVHLNLH 270 (481)
T ss_pred CccccchHHHHHHHHHHHcCCEEEEEecChhhhcc--cCC---ccccCCCEEEEech
Confidence 68888 68999999999999999999998644221 111 12335799999987
No 43
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=97.54 E-value=0.00016 Score=49.21 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=31.0
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~ 37 (63)
.++.+|.++|+++|.++|+++++++++|.||+..
T Consensus 148 p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g 181 (361)
T cd06452 148 VDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVG 181 (361)
T ss_pred CCCCCeeeccHHHHHHHHHHcCCeEEEECCcccC
Confidence 4678999999999999999999999999999843
No 44
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=97.53 E-value=0.00013 Score=56.78 Aligned_cols=55 Identities=18% Similarity=0.127 Sum_probs=42.1
Q ss_pred CccccceeeeeC-HHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030 2 FPGTTVLGAFDP-IPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 2 t~Gtt~tG~id~-i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h 62 (63)
|.++| +|.++| +++|+++++++|.++++|+|+......... .+-..+|.+..|+|
T Consensus 635 T~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~l~~-----Pg~~GaDi~~~s~H 690 (939)
T TIGR00461 635 TYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVGLTS-----PGDLGADVCHLNLH 690 (939)
T ss_pred EeCCc-CceecccHHHHHHHHHHcCCEEEEEecChhhCCCCCC-----ccccCCCEEEecCC
Confidence 45667 799988 999999999999999999999653332221 24456788888877
No 45
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=97.53 E-value=8.1e-05 Score=51.18 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=30.8
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGG 36 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg 36 (63)
.++.||.+.|+++|.++|+++|+++++|++|+.
T Consensus 169 ~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~ 201 (401)
T PRK10874 169 MSNVTGGCPDLARAITLAHQAGMVVMVDGAQGA 201 (401)
T ss_pred CcccccCcCCHHHHHHHHHHcCCEEEEECCccc
Confidence 478999999999999999999999999999974
No 46
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=97.52 E-value=0.00014 Score=50.66 Aligned_cols=35 Identities=23% Similarity=0.197 Sum_probs=31.5
Q ss_pred ccccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030 3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~ 37 (63)
.-++.||.+.|+++|.++|+++++++++|++|+..
T Consensus 181 ~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g 215 (424)
T PLN02855 181 HVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVP 215 (424)
T ss_pred CccccccccCCHHHHHHHHHHcCCEEEEEhhhhcC
Confidence 35788999999999999999999999999999643
No 47
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=97.51 E-value=8.1e-05 Score=51.15 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=31.2
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~ 37 (63)
.++.||.+.|+++|.++|+++++++++|++|+..
T Consensus 166 ~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~ 199 (398)
T TIGR03392 166 MSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVV 199 (398)
T ss_pred ccccccccCCHHHHHHHHHHcCCEEEEEhhhhcC
Confidence 4789999999999999999999999999999743
No 48
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=97.46 E-value=0.00013 Score=47.98 Aligned_cols=37 Identities=11% Similarity=0.121 Sum_probs=31.5
Q ss_pred ccccceeeeeCHHHHH---HHHHHcCcEEEecccccceee
Q psy14030 3 PGTTVLGAFDPIPAIA---DICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 3 ~Gtt~tG~id~i~~i~---~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.+++.+|.+.|++++. ++|+++++++++|.+|+++..
T Consensus 140 ~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~ 179 (350)
T cd00609 140 NPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVY 179 (350)
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhcee
Confidence 3678899999877666 789999999999999988665
No 49
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=97.46 E-value=0.00024 Score=47.30 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=30.0
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGG 36 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg 36 (63)
..+.+|.+.|+++|.++|+++++++++|.+|+.
T Consensus 141 ~~~~tG~~~~~~~i~~~~~~~~~~livD~a~~~ 173 (349)
T cd06454 141 VYSMDGDIAPLPELVDLAKKYGAILFVDEAHSV 173 (349)
T ss_pred cccCCCCccCHHHHHHHHHHcCCEEEEEccccc
Confidence 346799999999999999999999999999973
No 50
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=97.41 E-value=0.00021 Score=48.83 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=31.0
Q ss_pred ccccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030 3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGG 36 (63)
Q Consensus 3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg 36 (63)
..++.+|.+.|+++|.++|+++++++++|+++..
T Consensus 164 ~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~ 197 (397)
T TIGR01976 164 AASNTLGSIVDLAAITELVHAAGALVVVDAVHYA 197 (397)
T ss_pred CCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhc
Confidence 3578999999999999999999999999999854
No 51
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=97.40 E-value=0.00016 Score=49.42 Aligned_cols=32 Identities=25% Similarity=0.482 Sum_probs=29.5
Q ss_pred ccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030 5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGG 36 (63)
Q Consensus 5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg 36 (63)
.+++|.+.|+++|+++|+++++++++|.+|+.
T Consensus 180 ~~~tG~~~~l~~i~~la~~~~~~li~De~~~~ 211 (393)
T TIGR01822 180 FSMDGVIAPLDEICDLADKYDALVMVDECHAT 211 (393)
T ss_pred ccCCCCcCCHHHHHHHHHHcCCEEEEECCccc
Confidence 47899999999999999999999999999953
No 52
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=97.35 E-value=0.00036 Score=48.24 Aligned_cols=31 Identities=26% Similarity=0.205 Sum_probs=28.6
Q ss_pred ccceeeeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030 5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWG 35 (63)
Q Consensus 5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~g 35 (63)
.+.+|.+.|+++|.++|+++|+++++|++|+
T Consensus 159 ~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~ 189 (363)
T TIGR01437 159 HCVQKSMLSVEDAAQVAQEHNLPLIVDAAAE 189 (363)
T ss_pred CCCcCCcCCHHHHHHHHHHcCCeEEEECCCC
Confidence 3468889999999999999999999999997
No 53
>PLN02721 threonine aldolase
Probab=97.31 E-value=0.00022 Score=47.65 Aligned_cols=56 Identities=14% Similarity=0.041 Sum_probs=35.1
Q ss_pred cceeeeeC---HHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030 6 TVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 6 t~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h 62 (63)
+.+|.+-| +++|.++|+++|+++++|+++........... ....++.+|++.+++|
T Consensus 149 np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~-~~~~~~~~d~~~~s~s 207 (353)
T PLN02721 149 NCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVP-VHRLVKAADSVSVCLS 207 (353)
T ss_pred ccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCC-HHHHhhhCCEEEEecc
Confidence 45677654 78999999999999999998753221111111 1112345677777654
No 54
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=97.31 E-value=0.00022 Score=48.04 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=30.6
Q ss_pred ccccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030 3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGG 36 (63)
Q Consensus 3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg 36 (63)
..++.+|.+.|+++|.++|+++++++++|++|+.
T Consensus 132 ~~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~ 165 (356)
T cd06451 132 HNETSTGVLNPLEGIGALAKKHDALLIVDAVSSL 165 (356)
T ss_pred ccCCCcccccCHHHHHHHHHhcCCEEEEeeehhc
Confidence 3567899999999999999999999999998863
No 55
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=97.25 E-value=0.00029 Score=47.76 Aligned_cols=33 Identities=27% Similarity=0.240 Sum_probs=30.1
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGG 36 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg 36 (63)
..+.||.+.|+++|.++|+++++++.+|++|+.
T Consensus 138 ~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~ 170 (363)
T TIGR02326 138 CETTTGILNPIEAVAKLAHRHGKVTIVDAMSSF 170 (363)
T ss_pred ecCCccccCcHHHHHHHHHHcCCEEEEEccccc
Confidence 467799999999999999999999999998864
No 56
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=97.23 E-value=0.00031 Score=47.40 Aligned_cols=33 Identities=27% Similarity=0.572 Sum_probs=29.6
Q ss_pred ccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030 5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~ 37 (63)
.+.+|.++++++|.++|+++++++++|.+|+.+
T Consensus 178 ~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g 210 (385)
T PRK05958 178 FSMDGDLAPLAELVALARRHGAWLLVDEAHGTG 210 (385)
T ss_pred ccCCCCcCCHHHHHHHHHHhCCEEEEECccccc
Confidence 457899999999999999999999999999643
No 57
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=97.16 E-value=0.00059 Score=48.84 Aligned_cols=35 Identities=26% Similarity=0.283 Sum_probs=30.6
Q ss_pred ccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
++.+|.+.|+++|+++|+++|+.+++|++|+....
T Consensus 165 ~Np~~~v~di~~I~~la~~~gi~livD~t~a~g~~ 199 (437)
T PRK05613 165 ANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAAL 199 (437)
T ss_pred CCCCCcccCHHHHHHHHHHcCCeEEEECCCccccc
Confidence 45678999999999999999999999999976544
No 58
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=97.11 E-value=0.00041 Score=46.25 Aligned_cols=33 Identities=30% Similarity=0.307 Sum_probs=29.4
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGG 36 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg 36 (63)
-+|.+|.+.|+++|.++|+++++++++|+++..
T Consensus 134 ~~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~ 166 (355)
T TIGR03301 134 HETTTGILNPLEAIAKVARSHGAVLIVDAMSSF 166 (355)
T ss_pred cCCcccchhHHHHHHHHHHHcCCEEEEEecccc
Confidence 457789999999999999999999999997653
No 59
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=97.08 E-value=0.00055 Score=47.04 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=31.3
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~ 37 (63)
.++.+|.+.|+++|.++|+++++++++|.+|+.+
T Consensus 155 p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g 188 (370)
T TIGR02539 155 VDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVG 188 (370)
T ss_pred CCCCCccccCHHHHHHHHHHcCCeEEEECccccC
Confidence 4678999999999999999999999999999864
No 60
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=97.08 E-value=0.00058 Score=47.10 Aligned_cols=36 Identities=28% Similarity=0.198 Sum_probs=32.1
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.++.+|.+.|+++|.++|+++|+++++|.+|+....
T Consensus 134 ~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~ 169 (369)
T cd00614 134 PTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYL 169 (369)
T ss_pred CCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhc
Confidence 467899999999999999999999999999986543
No 61
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=97.02 E-value=0.0014 Score=48.13 Aligned_cols=59 Identities=15% Similarity=0.084 Sum_probs=41.5
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h 62 (63)
|.+..+.+.|+++|+++|+++|.++.+|+||+..................+|=++.+.|
T Consensus 227 g~S~~~~~~dl~~i~eia~~~gA~L~VD~AH~~Gligg~~~~~~~~~~~~~D~vtgT~h 285 (493)
T PRK13580 227 GYSAYPRRVNFAKLREIADEVGAVLMVDMAHFAGLVAGKVFTGDEDPVPHADIVTTTTH 285 (493)
T ss_pred CccccCCCcCHHHHHHHHHHcCCEEEEECchhhceeccccchhhcCCCCCCcEEEeCCh
Confidence 44455668899999999999999999999998766643322211223456777776665
No 62
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=97.00 E-value=0.00071 Score=48.28 Aligned_cols=34 Identities=24% Similarity=0.129 Sum_probs=30.9
Q ss_pred ccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
++.+|.+.|+++|+++|+++++++++|++|+...
T Consensus 159 ~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~ 192 (433)
T PRK08134 159 GNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPY 192 (433)
T ss_pred CcccCcccCHHHHHHHHHHcCCEEEEECCCcccc
Confidence 5789999999999999999999999999997543
No 63
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=97.00 E-value=0.0011 Score=45.48 Aligned_cols=32 Identities=19% Similarity=0.139 Sum_probs=27.7
Q ss_pred ccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030 5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGG 36 (63)
Q Consensus 5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg 36 (63)
++.+|...|+++|.++|+++++++++|++|..
T Consensus 169 ~~~~~~~~~~~~I~~l~~~~~~~li~D~a~~~ 200 (402)
T cd00378 169 ASAYPRPIDFKRFREIADEVGAYLLVDMAHVA 200 (402)
T ss_pred CcccCCCcCHHHHHHHHHhcCCEEEEEccchh
Confidence 44567888999999999999999999999743
No 64
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=97.00 E-value=0.00075 Score=46.60 Aligned_cols=32 Identities=22% Similarity=0.363 Sum_probs=29.9
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWG 35 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~g 35 (63)
.++.+|.+.|+++|.++|+++++++.+|.+|+
T Consensus 186 ~~~~~G~~~~l~~i~~l~~~~~~~livDea~~ 217 (402)
T TIGR01821 186 VYSMDGDIAPIEEICDLADKYGALTYLDEVHA 217 (402)
T ss_pred CCCCCCCccCHHHHHHHHHHcCCEEEEeCccc
Confidence 35789999999999999999999999999998
No 65
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=96.99 E-value=0.0013 Score=45.55 Aligned_cols=32 Identities=19% Similarity=0.153 Sum_probs=28.2
Q ss_pred ccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030 5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGG 36 (63)
Q Consensus 5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg 36 (63)
.+++|...|+++|.++|+++++++++|++|+.
T Consensus 173 ~~~~~~~~~~~~I~~la~~~~~~livD~a~~~ 204 (416)
T PRK00011 173 ASAYSRPIDFKRFREIADEVGAYLMVDMAHIA 204 (416)
T ss_pred CCcCCCccCHHHHHHHHHHcCCEEEEECcchh
Confidence 35678788999999999999999999999853
No 66
>PRK05939 hypothetical protein; Provisional
Probab=96.98 E-value=0.0006 Score=47.99 Aligned_cols=35 Identities=14% Similarity=0.128 Sum_probs=31.4
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
-+|.+|.+.|+++|+++|+++++++.+|.+|+...
T Consensus 140 p~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~ 174 (397)
T PRK05939 140 IANPGTQVADLAGIGALCRERGLLYVVDNTMTSPW 174 (397)
T ss_pred CCCCCCCHHhHHHHHHHHHHcCCEEEEECCccccc
Confidence 46789999999999999999999999999997543
No 67
>PRK15029 arginine decarboxylase; Provisional
Probab=96.97 E-value=0.0014 Score=50.07 Aligned_cols=41 Identities=24% Similarity=0.199 Sum_probs=37.8
Q ss_pred cceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchh
Q psy14030 6 TVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRH 46 (63)
Q Consensus 6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~ 46 (63)
|.-|.+-++++|+++|.+++++++||-|||+.+.|.+.++.
T Consensus 322 TY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~~~p~ 362 (755)
T PRK15029 322 TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYAD 362 (755)
T ss_pred CCcceeeCHHHHHHHHHhcCCeEEEECccccccccCccccc
Confidence 67899999999999999999999999999999999887763
No 68
>PRK09064 5-aminolevulinate synthase; Validated
Probab=96.97 E-value=0.00082 Score=46.39 Aligned_cols=31 Identities=23% Similarity=0.441 Sum_probs=29.2
Q ss_pred ccceeeeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030 5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWG 35 (63)
Q Consensus 5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~g 35 (63)
.+++|.+.|+++|.++|+++++++.+|.+|+
T Consensus 188 ~s~~G~~~~l~~i~~l~~~~~~~livDEa~~ 218 (407)
T PRK09064 188 YSMDGDIAPIAEICDLADKYNALTYLDEVHA 218 (407)
T ss_pred CCCCccccCHHHHHHHHHHcCCEEEEECCCc
Confidence 5678999999999999999999999999997
No 69
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=96.93 E-value=0.0013 Score=47.53 Aligned_cols=56 Identities=14% Similarity=0.073 Sum_probs=41.2
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h 62 (63)
|.+.++...|+++|.++|+++|.++++|+||+.......-... .++.+|-++...|
T Consensus 190 ~~S~~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~---p~~~~Div~~t~h 245 (475)
T PLN03226 190 GASAYPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAAS---PFEYCDVVTTTTH 245 (475)
T ss_pred ecCcCCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCC---CCCCCeEEEecCc
Confidence 4556888899999999999999999999999876654332211 1235777777665
No 70
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=96.92 E-value=0.00092 Score=45.45 Aligned_cols=33 Identities=30% Similarity=0.562 Sum_probs=29.9
Q ss_pred ccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030 5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~ 37 (63)
.+.+|.+.|+++|.++|+++++++.+|.+|+.+
T Consensus 173 ~~~tG~~~~~~~i~~l~~~~~~~li~De~~~~~ 205 (385)
T TIGR01825 173 FSMDGDVAPLPEIVELAERYGAVTYVDDAHGSG 205 (385)
T ss_pred CcCCCCccCHHHHHHHHHHhCCEEEEECccccc
Confidence 467899999999999999999999999999654
No 71
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=96.92 E-value=0.00033 Score=46.56 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=23.1
Q ss_pred eeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030 10 AFDPIPAIADICAEYDMWLHVDAAWGG 36 (63)
Q Consensus 10 ~id~i~~i~~i~~~~~~~~HvDaa~gg 36 (63)
..+++++|.++|+++++++++|.||..
T Consensus 144 ~~~~l~~i~~~~~~~~~~livDea~~~ 170 (338)
T cd06502 144 PLDELKAISALAKENGLPLHLDGARLA 170 (338)
T ss_pred CHHHHHHHHHHHHHcCCeEeechHHHH
Confidence 357788899999999999999998753
No 72
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=96.90 E-value=0.0011 Score=44.23 Aligned_cols=33 Identities=24% Similarity=0.180 Sum_probs=29.5
Q ss_pred ccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030 5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~ 37 (63)
++.+|.+.|+++|.++|+++++++.+|++|+..
T Consensus 113 ~~~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g 145 (352)
T cd00616 113 VHLYGNPADMDAIMAIAKRHGLPVIEDAAQALG 145 (352)
T ss_pred ECCCCCcCCHHHHHHHHHHcCCeEEEECCCCCC
Confidence 456899999999999999999999999999743
No 73
>PRK06767 methionine gamma-lyase; Provisional
Probab=96.90 E-value=0.0011 Score=46.11 Aligned_cols=34 Identities=6% Similarity=0.057 Sum_probs=30.9
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~ 37 (63)
.+|.+|.+-|+++|.++|+++++++++|.+|+..
T Consensus 155 p~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~ 188 (386)
T PRK06767 155 PINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSP 188 (386)
T ss_pred CCCCCceecCHHHHHHHHHHcCCEEEEECCCccc
Confidence 4678999999999999999999999999999743
No 74
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=96.89 E-value=0.001 Score=45.11 Aligned_cols=33 Identities=27% Similarity=0.273 Sum_probs=29.3
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGG 36 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg 36 (63)
.+|.||.+.|+++|.++|+++++++.+|+++..
T Consensus 140 ~~~~tG~~~~~~~i~~l~~~~~~~livDa~~~~ 172 (368)
T PRK13479 140 CETTTGILNPLDEIAAVAKRHGKRLIVDAMSSF 172 (368)
T ss_pred ccCccccccCHHHHHHHHHHcCCEEEEEccccc
Confidence 356899999999999999999999999987643
No 75
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=96.89 E-value=0.001 Score=46.48 Aligned_cols=35 Identities=26% Similarity=0.277 Sum_probs=31.5
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.++.+|.+.|+++|.++|+++++++++|.+|+...
T Consensus 155 p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~~ 189 (390)
T PRK08133 155 PSNPLTELADIAALAEIAHAAGALLVVDNCFCTPA 189 (390)
T ss_pred CCCCCCCcCCHHHHHHHHHHcCCEEEEECCCcccc
Confidence 47889999999999999999999999999986543
No 76
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=96.78 E-value=0.0017 Score=45.20 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=31.6
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.++.+|.+.|+++|.++|+++++++.+|.+|+.+.
T Consensus 148 p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~~ 182 (380)
T TIGR01325 148 PSNPLGELVDIAALAELAHAIGALLVVDNVFATPV 182 (380)
T ss_pred CCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccc
Confidence 46789999999999999999999999999998543
No 77
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=96.77 E-value=0.0014 Score=45.48 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=29.4
Q ss_pred ccceeeeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030 5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWG 35 (63)
Q Consensus 5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~g 35 (63)
++++|.+.|+++|.++|+++++++.+|.+|+
T Consensus 187 ~~~~G~~~~l~~i~~l~~~~~~~livDea~~ 217 (406)
T PRK13393 187 YSMDGDIAPIAEICDVAEKHGAMTYLDEVHA 217 (406)
T ss_pred CCCCCchhCHHHHHHHHHHcCCEEEEECCcc
Confidence 5788999999999999999999999999997
No 78
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=96.77 E-value=0.0015 Score=45.99 Aligned_cols=35 Identities=14% Similarity=0.056 Sum_probs=31.9
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.++.+|.+.|+++|.++|+++++++.+|.+|+.+.
T Consensus 158 p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~ 192 (398)
T PRK08249 158 PTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPI 192 (398)
T ss_pred CCCCCCccCCHHHHHHHHHHcCCEEEEECCcCccc
Confidence 46889999999999999999999999999998654
No 79
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=96.74 E-value=0.0017 Score=47.30 Aligned_cols=52 Identities=8% Similarity=0.120 Sum_probs=37.0
Q ss_pred eeCHHHHHHHHHHcCcEEEecccccceee-ecccchhhhCC----------CCCCceeEecCC
Q psy14030 11 FDPIPAIADICAEYDMWLHVDAAWGGGAL-VSRKHRHLLTG----------IERPQNRSEDTP 62 (63)
Q Consensus 11 id~i~~i~~i~~~~~~~~HvDaa~gg~~~-~~~~~~~~~~~----------i~~adSi~~d~h 62 (63)
+.++++|.++|+++|+++|.|+|....-+ |..+....+.+ ...+|.++.|+|
T Consensus 197 ~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~ 259 (460)
T PRK13237 197 MANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGK 259 (460)
T ss_pred HHhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCC
Confidence 45889999999999999999999875433 44322111111 357899998876
No 80
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=96.73 E-value=0.0016 Score=43.32 Aligned_cols=32 Identities=31% Similarity=0.698 Sum_probs=29.3
Q ss_pred ccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030 5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGG 36 (63)
Q Consensus 5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg 36 (63)
.+.+|.+.|+++|.++|+++++++.+|.+|+.
T Consensus 156 ~~~~G~~~~~~~i~~l~~~~~~~li~De~~~~ 187 (360)
T TIGR00858 156 FSMDGDIAPLPQLVALAERYGAWLMVDDAHGT 187 (360)
T ss_pred ccCCCCCcCHHHHHHHHHHcCcEEEEECcccc
Confidence 36789999999999999999999999999974
No 81
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=96.72 E-value=0.0016 Score=44.19 Aligned_cols=31 Identities=29% Similarity=0.597 Sum_probs=28.4
Q ss_pred ccceeeeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030 5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWG 35 (63)
Q Consensus 5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~g 35 (63)
.+.+|.+.++++|.++|+++++++++|.+|+
T Consensus 184 ~~~~G~~~~~~~l~~la~~~~~~li~De~~~ 214 (397)
T PRK06939 184 FSMDGDIAPLPEICDLADKYDALVMVDDSHA 214 (397)
T ss_pred cCCCCCcCCHHHHHHHHHHhCCEEEEECccc
Confidence 3568889999999999999999999999996
No 82
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=96.72 E-value=0.0017 Score=45.06 Aligned_cols=32 Identities=28% Similarity=0.418 Sum_probs=30.0
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWG 35 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~g 35 (63)
-++.+|.+-|+++|.++|+++++++.+|.+|+
T Consensus 187 ~~n~tG~~~~l~~i~~l~~~~~~~livDea~~ 218 (410)
T PRK13392 187 VYSMDGDIAPIEAICDLADRYNALTYVDEVHA 218 (410)
T ss_pred CCCCCcccccHHHHHHHHHHcCCEEEEECCcc
Confidence 46789999999999999999999999999998
No 83
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=96.71 E-value=0.0018 Score=46.33 Aligned_cols=34 Identities=21% Similarity=0.121 Sum_probs=30.9
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~ 37 (63)
-++.+|.+.|+++|+++|+++|+++.||++|+..
T Consensus 164 ~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~ 197 (436)
T PRK07812 164 ISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATP 197 (436)
T ss_pred CCCCCCeecCHHHHHHHHHHcCCEEEEECCCccc
Confidence 4678999999999999999999999999999754
No 84
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=96.69 E-value=0.0019 Score=46.94 Aligned_cols=51 Identities=8% Similarity=0.107 Sum_probs=36.8
Q ss_pred eCHHHHHHHHHHcCcEEEecccccc-eeeecccchhhhC----------CCCCCceeEecCC
Q psy14030 12 DPIPAIADICAEYDMWLHVDAAWGG-GALVSRKHRHLLT----------GIERPQNRSEDTP 62 (63)
Q Consensus 12 d~i~~i~~i~~~~~~~~HvDaa~gg-~~~~~~~~~~~~~----------~i~~adSi~~d~h 62 (63)
.++++|.++|+++|+++|.|+|... -.++..+..+... -.+.+|+++.++|
T Consensus 191 ~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~ 252 (450)
T TIGR02618 191 ANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGK 252 (450)
T ss_pred HHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEeec
Confidence 6799999999999999999999876 3444432211111 1457899998876
No 85
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=96.67 E-value=0.0012 Score=47.57 Aligned_cols=38 Identities=32% Similarity=0.330 Sum_probs=31.4
Q ss_pred ccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecc
Q psy14030 5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSR 42 (63)
Q Consensus 5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~ 42 (63)
-|..|.+-|+++|+++|++++++++||-|||+.+.|.+
T Consensus 177 PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~ 214 (417)
T PF01276_consen 177 PTYYGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHP 214 (417)
T ss_dssp S-TTSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSG
T ss_pred CCCCeEEECHHHHHHHhcccCCEEEEEccccccccCCC
Confidence 36779999999999999999999999999999998884
No 86
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=96.67 E-value=0.0035 Score=44.18 Aligned_cols=55 Identities=16% Similarity=0.119 Sum_probs=38.7
Q ss_pred ccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030 5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h 62 (63)
.+..|..-|+.+|.++|+++++++++|+|++.......... ..+..+|-+..+.|
T Consensus 176 ~~~~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~~~---~~~~~~Di~~~s~~ 230 (416)
T PRK13034 176 FSAYPRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHP---NPFPHAHVVTTTTH 230 (416)
T ss_pred CCccccccCHHHHHHHHHHcCCEEEEeCcccccCcccCCCC---CCCCCceEEEEeCc
Confidence 45577788999999999999999999999876555433211 12344666665544
No 87
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=96.67 E-value=0.0019 Score=45.51 Aligned_cols=33 Identities=21% Similarity=0.146 Sum_probs=30.4
Q ss_pred ccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030 5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~ 37 (63)
+|.+|.+.|+++|+++|+++++++.+|.+|+..
T Consensus 152 ~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~ 184 (418)
T TIGR01326 152 GNPAINVPDIEAIAEVAHAHGVPLIVDNTFATP 184 (418)
T ss_pred CCCCCeecCHHHHHHHHHHcCCEEEEECCCchh
Confidence 578999999999999999999999999999754
No 88
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=96.67 E-value=0.0019 Score=45.27 Aligned_cols=35 Identities=6% Similarity=-0.035 Sum_probs=31.3
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.++.+|.+-|+++|.++|+++++++++|.+|+...
T Consensus 153 p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~~ 187 (391)
T TIGR01328 153 PANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPM 187 (391)
T ss_pred CCCCCCcccCHHHHHHHHHHcCCEEEEECCCchhc
Confidence 46789999999999999999999999999997543
No 89
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=96.66 E-value=0.0022 Score=44.99 Aligned_cols=35 Identities=23% Similarity=0.116 Sum_probs=31.7
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.++.+|.+-|+++|.++|+++++++.+|.+|+.+.
T Consensus 159 p~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~ 193 (398)
T PRK07504 159 PTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPL 193 (398)
T ss_pred CCCCCcEecCHHHHHHHHHHcCCEEEEECCccccc
Confidence 57889999999999999999999999999997544
No 90
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=96.64 E-value=0.0023 Score=44.55 Aligned_cols=35 Identities=17% Similarity=0.123 Sum_probs=31.3
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.++.+|.+.|+++|+++|+++++++.+|.+|+...
T Consensus 140 psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~ 174 (378)
T TIGR01329 140 PTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPL 174 (378)
T ss_pred CCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccc
Confidence 46789999999999999999999999999986543
No 91
>PLN02242 methionine gamma-lyase
Probab=96.63 E-value=0.002 Score=45.68 Aligned_cols=33 Identities=21% Similarity=0.207 Sum_probs=30.2
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGG 36 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg 36 (63)
-+|.+|.+.|+++|.++|+++++++.+|.+|+.
T Consensus 172 p~NPtG~v~dl~~I~~la~~~gi~livDea~~~ 204 (418)
T PLN02242 172 ISNPTLTVADIPELARIAHEKGVTVVVDNTFAP 204 (418)
T ss_pred CCCCCCcccCHHHHHHHHHHhCCEEEEECCCCc
Confidence 457899999999999999999999999999964
No 92
>PRK07050 cystathionine beta-lyase; Provisional
Probab=96.57 E-value=0.002 Score=45.22 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=31.0
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.++.+|.+.++++|+++|+++++++++|.+|+...
T Consensus 159 p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~~ 193 (394)
T PRK07050 159 PGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGL 193 (394)
T ss_pred CCCCCccHhhHHHHHHHHHHcCCEEEEECCccccc
Confidence 35678999999999999999999999999997644
No 93
>PRK06460 hypothetical protein; Provisional
Probab=96.55 E-value=0.0026 Score=44.26 Aligned_cols=34 Identities=26% Similarity=0.278 Sum_probs=31.2
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~ 37 (63)
.+|.+|.+-|+++|.++|+++++++.+|.+|+.+
T Consensus 139 p~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~ 172 (376)
T PRK06460 139 ITNPLLRVVDITELSKVCKENGSILIVDATFSTP 172 (376)
T ss_pred CCCCCCcccCHHHHHHHHHHcCCEEEEECCcCcc
Confidence 4678999999999999999999999999999864
No 94
>PRK07671 cystathionine beta-lyase; Provisional
Probab=96.53 E-value=0.0027 Score=44.27 Aligned_cols=34 Identities=24% Similarity=0.172 Sum_probs=31.0
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~ 37 (63)
.+|.+|.+.|+++|.++|+++++++.+|.+|+..
T Consensus 143 P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~ 176 (377)
T PRK07671 143 PTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTP 176 (377)
T ss_pred CCCCCCcccCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 4678999999999999999999999999999753
No 95
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=96.52 E-value=0.002 Score=44.69 Aligned_cols=33 Identities=30% Similarity=0.276 Sum_probs=29.7
Q ss_pred ccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030 5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~ 37 (63)
++.+|...|+++|.++|+++|+++++|++|+..
T Consensus 128 ~~~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~g 160 (379)
T PRK11658 128 VHYAGAPADLDAIRAIGERYGIPVIEDAAHAVG 160 (379)
T ss_pred eCCCCCcCCHHHHHHHHHHcCCeEEEECCCccC
Confidence 456899999999999999999999999999743
No 96
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=96.52 E-value=0.0031 Score=44.13 Aligned_cols=35 Identities=20% Similarity=0.145 Sum_probs=31.2
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.+|.+-|+++|.++|+++++++.+|.+|+...
T Consensus 146 p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~ 180 (385)
T PRK08574 146 MTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPL 180 (385)
T ss_pred CCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccc
Confidence 46789999999999999999999999999997543
No 97
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=96.51 E-value=0.0025 Score=43.05 Aligned_cols=35 Identities=26% Similarity=0.214 Sum_probs=32.3
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.++.||.+.|++++.++++++++++++|.+|..+.
T Consensus 167 p~nptG~~~~~~~l~~l~~~~~~~li~De~y~~~~ 201 (361)
T PRK00950 167 PNNPTGNLIPEEDIRKILESTDALVFVDEAYVEFA 201 (361)
T ss_pred CCCCCCCCcCHHHHHHHHHHCCcEEEEECchhhhC
Confidence 57899999999999999999999999999998654
No 98
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=96.51 E-value=0.0032 Score=44.68 Aligned_cols=34 Identities=24% Similarity=0.203 Sum_probs=30.8
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~ 37 (63)
-+|.+|.+-|+++|.++|+++++++.+|.+|+..
T Consensus 157 p~NptG~v~dl~~I~~la~~~gi~livD~a~a~~ 190 (427)
T PRK05994 157 IANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASP 190 (427)
T ss_pred CCCCCCeecCHHHHHHHHHHcCCEEEEECCcccc
Confidence 3678999999999999999999999999999854
No 99
>PRK08064 cystathionine beta-lyase; Provisional
Probab=96.50 E-value=0.0033 Score=43.98 Aligned_cols=36 Identities=14% Similarity=0.109 Sum_probs=32.6
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.+|.+|.+.|+++|.++|+++++++-+|.+|+.+..
T Consensus 147 p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~ 182 (390)
T PRK08064 147 PSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLL 182 (390)
T ss_pred CCCCCcEeccHHHHHHHHHHcCCEEEEECCCCcccc
Confidence 578899999999999999999999999999987543
No 100
>PLN02409 serine--glyoxylate aminotransaminase
Probab=96.50 E-value=0.0022 Score=44.73 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=29.6
Q ss_pred ccceeeeeCHHHHHHH--HHHcCcEEEecccccc
Q psy14030 5 TTVLGAFDPIPAIADI--CAEYDMWLHVDAAWGG 36 (63)
Q Consensus 5 tt~tG~id~i~~i~~i--~~~~~~~~HvDaa~gg 36 (63)
.|.||.+.|+++|.++ |+++++++.+|++|+.
T Consensus 147 ~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~ 180 (401)
T PLN02409 147 ETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSI 180 (401)
T ss_pred cccccccCCHHHHHHHHhhhccCcEEEEEccccc
Confidence 5679999999999999 9999999999999874
No 101
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=96.49 E-value=0.0024 Score=45.89 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=26.1
Q ss_pred ccccee----eeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030 4 GTTVLG----AFDPIPAIADICAEYDMWLHVDAAWG 35 (63)
Q Consensus 4 Gtt~tG----~id~i~~i~~i~~~~~~~~HvDaa~g 35 (63)
.+|.+| ..+++++|+++|+++|++++.|+|+.
T Consensus 186 p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~ 221 (460)
T PRK13238 186 TNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARF 221 (460)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcch
Confidence 355666 35668899999999999999999874
No 102
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=96.45 E-value=0.003 Score=45.11 Aligned_cols=31 Identities=32% Similarity=0.395 Sum_probs=28.6
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccc
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAW 34 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~ 34 (63)
..|.||+++|+++|++++++++..+-||+.-
T Consensus 140 ~ETSTGvlnpl~~I~~~~k~~g~l~iVDaVs 170 (383)
T COG0075 140 NETSTGVLNPLKEIAKAAKEHGALLIVDAVS 170 (383)
T ss_pred ccCcccccCcHHHHHHHHHHcCCEEEEEecc
Confidence 5689999999999999999999999999953
No 103
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=96.44 E-value=0.0038 Score=43.65 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=31.5
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.++.+|.+.|+++|+++|+++++++.+|.+|+...
T Consensus 155 p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~ 189 (388)
T PRK07811 155 PTNPLLSITDIAALAELAHDAGAKVVVDNTFASPY 189 (388)
T ss_pred CCCCcceecCHHHHHHHHHHcCCEEEEECCCCccc
Confidence 46788999999999999999999999999998654
No 104
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=96.39 E-value=0.0047 Score=48.51 Aligned_cols=35 Identities=20% Similarity=-0.052 Sum_probs=32.2
Q ss_pred CccccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030 2 FPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGG 36 (63)
Q Consensus 2 t~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg 36 (63)
|.++|..|.++|+++|+++++++|..+++|+||..
T Consensus 673 t~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~ 707 (993)
T PLN02414 673 TYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMN 707 (993)
T ss_pred ECCCccccccchHHHHHHHHHHcCCEEEEEecCHH
Confidence 46789999999999999999999999999999954
No 105
>PRK09028 cystathionine beta-lyase; Provisional
Probab=96.37 E-value=0.0027 Score=44.96 Aligned_cols=36 Identities=17% Similarity=0.362 Sum_probs=32.2
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.+|.+|.+.|+++|+++|+++++++-+|.+|+..+.
T Consensus 155 psNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~~ 190 (394)
T PRK09028 155 PGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPIN 190 (394)
T ss_pred CCCCCCcHHHHHHHHHHHHHcCCEEEEECCcccccc
Confidence 467799999999999999999999999999987543
No 106
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=96.37 E-value=0.0034 Score=44.00 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=25.4
Q ss_pred cceeeeeCHHHHHHHHHHcCcEEEe--ccc
Q psy14030 6 TVLGAFDPIPAIADICAEYDMWLHV--DAA 33 (63)
Q Consensus 6 t~tG~id~i~~i~~i~~~~~~~~Hv--Daa 33 (63)
|.||.++|+++|+++|+++++|+++ |+.
T Consensus 214 n~tG~v~~l~~I~~~a~~~~~~~iv~~d~~ 243 (447)
T PRK00451 214 NFFGVIEDLEEIAEIAHAGGALFIVGVDPV 243 (447)
T ss_pred CCCCeeCCHHHHHHHHHHCCCEEEEEcChH
Confidence 6799999999999999999999998 643
No 107
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=96.35 E-value=0.0031 Score=44.17 Aligned_cols=36 Identities=25% Similarity=0.475 Sum_probs=32.0
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.++.+|.+.|+++|+++|+++++++-+|.+|+....
T Consensus 144 p~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~ 179 (377)
T TIGR01324 144 PSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLL 179 (377)
T ss_pred CCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccc
Confidence 467889999999999999999999999999986544
No 108
>PRK07503 methionine gamma-lyase; Provisional
Probab=96.32 E-value=0.0049 Score=43.33 Aligned_cols=34 Identities=18% Similarity=0.082 Sum_probs=31.1
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~ 37 (63)
.++.+|.+-|+++|.++|+++++++.+|.+|+..
T Consensus 159 p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~ 192 (403)
T PRK07503 159 PANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTP 192 (403)
T ss_pred CCCCCCeeeCHHHHHHHHHHcCCEEEEECCCccc
Confidence 4678999999999999999999999999999754
No 109
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=96.31 E-value=0.0022 Score=45.33 Aligned_cols=51 Identities=25% Similarity=0.266 Sum_probs=30.9
Q ss_pred ceeeeeCHHH---HHHHHHHcCcEEEecccccceeeec--ccchhhhCCCCCCceeEec
Q psy14030 7 VLGAFDPIPA---IADICAEYDMWLHVDAAWGGGALVS--RKHRHLLTGIERPQNRSED 60 (63)
Q Consensus 7 ~tG~id~i~~---i~~i~~~~~~~~HvDaa~gg~~~~~--~~~~~~~~~i~~adSi~~d 60 (63)
|.|++-|++| |.++|+++++.+|+|+|=-...+.. +..+ .+ -..+||+++-
T Consensus 142 e~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~-~~--~~~~D~v~~~ 197 (342)
T COG2008 142 EGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVALK-TI--KSYVDSVSFC 197 (342)
T ss_pred CCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCHH-HH--HhhCCEEEEe
Confidence 5588766555 5557889999999999744333322 1111 11 2345777763
No 110
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=96.30 E-value=0.0018 Score=44.18 Aligned_cols=48 Identities=19% Similarity=0.197 Sum_probs=31.6
Q ss_pred eeCHHHHHHHHHHcCcEEEecccccceeee--cccchhhhCCCCCCceeEecC
Q psy14030 11 FDPIPAIADICAEYDMWLHVDAAWGGGALV--SRKHRHLLTGIERPQNRSEDT 61 (63)
Q Consensus 11 id~i~~i~~i~~~~~~~~HvDaa~gg~~~~--~~~~~~~~~~i~~adSi~~d~ 61 (63)
++.+++|.++|+++|+++|+|+|=-...+. -...++.. ..+|++++++
T Consensus 144 ~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~---~~~D~v~~~~ 193 (290)
T PF01212_consen 144 LEELRAISELAREHGLPLHMDGARLANAAAALGVSLAEIA---AGADSVSFGG 193 (290)
T ss_dssp HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHH---TTSSEEEEET
T ss_pred HHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHHHHh---hhCCEEEEEE
Confidence 456777777889999999999985443332 12233333 6679998875
No 111
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=96.29 E-value=0.0052 Score=42.98 Aligned_cols=34 Identities=12% Similarity=0.149 Sum_probs=31.3
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~ 37 (63)
.++.+|.+.|+++|.++|+++++++.+|.+|+..
T Consensus 143 P~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~ 176 (380)
T PRK06176 143 PSNPLLKITDLAQCASVAKDHGLLTIVDNTFATP 176 (380)
T ss_pred CCCCCceecCHHHHHHHHHHcCCEEEEECCcccc
Confidence 4788999999999999999999999999999864
No 112
>PRK05967 cystathionine beta-lyase; Provisional
Probab=96.27 E-value=0.0032 Score=44.68 Aligned_cols=36 Identities=19% Similarity=0.257 Sum_probs=31.7
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.+|.++.+.|+++|+++|+++|+++-||.+|+....
T Consensus 158 PsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p~~ 193 (395)
T PRK05967 158 PGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPLY 193 (395)
T ss_pred CCCCCCcHHHHHHHHHHHHHhCCEEEEECCccCcee
Confidence 356789999999999999999999999999987543
No 113
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=96.25 E-value=0.0049 Score=43.97 Aligned_cols=33 Identities=27% Similarity=0.216 Sum_probs=30.3
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGG 36 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg 36 (63)
-+|.+|.+-|+++|.++|+++++++.+|.+|+.
T Consensus 158 p~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~ 190 (431)
T PRK08248 158 IGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFAS 190 (431)
T ss_pred CCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCc
Confidence 357899999999999999999999999999974
No 114
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=96.24 E-value=0.0032 Score=46.05 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=34.6
Q ss_pred eeeCHHHHHHHHHHcCcEEEecccccce-eeecccchh-----hhCC-----CCCCceeEecC
Q psy14030 10 AFDPIPAIADICAEYDMWLHVDAAWGGG-ALVSRKHRH-----LLTG-----IERPQNRSEDT 61 (63)
Q Consensus 10 ~id~i~~i~~i~~~~~~~~HvDaa~gg~-~~~~~~~~~-----~~~~-----i~~adSi~~d~ 61 (63)
.++++.++.++|+++|+.+|.|+|=-.- +++..+... ..+. .+.+||++++.
T Consensus 202 slenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~sl 264 (467)
T TIGR02617 202 SLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSA 264 (467)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEc
Confidence 4677889999999999999999975442 333222111 1111 37789999874
No 115
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=96.21 E-value=0.0054 Score=43.24 Aligned_cols=35 Identities=11% Similarity=0.053 Sum_probs=32.1
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-|+++|.++|+++++++.+|.+|+...
T Consensus 147 P~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~ 181 (388)
T PRK08861 147 PSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPV 181 (388)
T ss_pred CCCCCCcccCHHHHHHHHHHcCCEEEEECCccccc
Confidence 57889999999999999999999999999998654
No 116
>PRK08361 aspartate aminotransferase; Provisional
Probab=96.11 E-value=0.007 Score=41.66 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=31.4
Q ss_pred cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030 4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.+|.||.+-+ +++|.++|+++++++++|-+|+.+..
T Consensus 175 p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~ 213 (391)
T PRK08361 175 PNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLY 213 (391)
T ss_pred CCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEccccccee
Confidence 5789999999 88888889999999999999987643
No 117
>PRK05968 hypothetical protein; Provisional
Probab=96.09 E-value=0.0045 Score=43.27 Aligned_cols=34 Identities=15% Similarity=0.303 Sum_probs=29.8
Q ss_pred ccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
++.++.+.|+++|.++|+++++++++|.+|+.+.
T Consensus 157 t~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~ 190 (389)
T PRK05968 157 TSWVFELQDVAALAALAKRHGVVTMIDNSWASPV 190 (389)
T ss_pred CCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchh
Confidence 4567778999999999999999999999997654
No 118
>PRK07582 cystathionine gamma-lyase; Validated
Probab=96.06 E-value=0.0067 Score=42.06 Aligned_cols=33 Identities=15% Similarity=-0.020 Sum_probs=29.6
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGG 36 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg 36 (63)
.+|.+|.+.|+++|.++|+++++++.||.+|+.
T Consensus 141 p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~~ 173 (366)
T PRK07582 141 PSNPGLDVCDLAALAAAAHAAGALLVVDNTTAT 173 (366)
T ss_pred CCCCCCCccCHHHHHHHHHHcCCEEEEECCCCC
Confidence 356788899999999999999999999999863
No 119
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=96.04 E-value=0.0052 Score=42.47 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=30.9
Q ss_pred cccceeee---eCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAF---DPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~i---d~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
|++++|.+ .++++|.++++++++++.+|-||+.+.
T Consensus 144 g~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~ 181 (346)
T TIGR03576 144 GSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARV 181 (346)
T ss_pred CCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccc
Confidence 56778887 899999999999999999999998654
No 120
>PLN02509 cystathionine beta-lyase
Probab=96.03 E-value=0.0054 Score=44.42 Aligned_cols=36 Identities=19% Similarity=0.135 Sum_probs=32.2
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.++.+|.+.|+++|+++|+++++++.+|.+|+....
T Consensus 226 PsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~ 261 (464)
T PLN02509 226 PTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVL 261 (464)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEEECCcccccc
Confidence 568899999999999999999999999999976543
No 121
>PLN02656 tyrosine transaminase
Probab=95.97 E-value=0.0048 Score=42.97 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=31.2
Q ss_pred cccceeee---eCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 4 GTTVLGAF---DPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~i---d~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.+|.||.+ +++++|.++|+++++++.+|.+|+.+..
T Consensus 178 P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~ 216 (409)
T PLN02656 178 PGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAF 216 (409)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhccc
Confidence 47889988 6788999999999999999999997653
No 122
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=95.91 E-value=0.0085 Score=41.17 Aligned_cols=34 Identities=24% Similarity=0.218 Sum_probs=29.8
Q ss_pred ccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
++.+|...|+++|.++|+++++++.+|++|+.+.
T Consensus 128 ~~~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~ 161 (380)
T TIGR03588 128 VDFAGKSVDMQAIAALAKKHGLKIIEDASHALGA 161 (380)
T ss_pred eCCCCccCCHHHHHHHHHHcCCEEEEECCCcccC
Confidence 4567889999999999999999999999997543
No 123
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=95.91 E-value=0.0097 Score=42.34 Aligned_cols=35 Identities=23% Similarity=0.098 Sum_probs=31.5
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.+|.+-|+++|.++|+++++++-+|.+|+...
T Consensus 152 p~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~ 186 (425)
T PRK06084 152 IGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPV 186 (425)
T ss_pred CCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccc
Confidence 45889999999999999999999999999998543
No 124
>PRK07324 transaminase; Validated
Probab=95.86 E-value=0.0095 Score=41.03 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=30.3
Q ss_pred cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+ +++|+++|+++++++.+|.+|..+.
T Consensus 162 p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~ 199 (373)
T PRK07324 162 ANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLD 199 (373)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccc
Confidence 4688998888 8888999999999999999997654
No 125
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=95.85 E-value=0.0073 Score=42.12 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=30.9
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
-++.+|..-|+++|.++|+++++++.+|++|+.+.
T Consensus 125 p~~~~G~~~d~~~I~~la~~~~i~vIeDaa~~~g~ 159 (376)
T TIGR02379 125 PVHYAGVACDMDTIMALANKHQLFVIEDAAQGVMS 159 (376)
T ss_pred EeCCCCCccCHHHHHHHHHHCCCEEEEECccccCC
Confidence 45678999999999999999999999999987543
No 126
>PRK07505 hypothetical protein; Provisional
Probab=95.85 E-value=0.0093 Score=41.33 Aligned_cols=32 Identities=25% Similarity=0.616 Sum_probs=29.7
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWG 35 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~g 35 (63)
+++.+|.+.|+++|.++|+++++++.+|-+|+
T Consensus 188 p~~~~G~~~~~~~i~~l~~~~~~~li~DEa~~ 219 (402)
T PRK07505 188 GVYSMGGIAPVKELLRLQEKYGLFLYIDDAHG 219 (402)
T ss_pred cccccCCcCCHHHHHHHHHHcCCEEEEECccc
Confidence 56788999999999999999999999999984
No 127
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=95.79 E-value=0.01 Score=41.17 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=30.1
Q ss_pred cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+ +++|.++|+++++++++|.+|+.+.
T Consensus 178 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~ 215 (403)
T TIGR01265 178 PSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMV 215 (403)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccc
Confidence 4688998854 8889999999999999999998765
No 128
>PRK08114 cystathionine beta-lyase; Provisional
Probab=95.79 E-value=0.012 Score=41.89 Aligned_cols=36 Identities=19% Similarity=0.426 Sum_probs=31.8
Q ss_pred cccceeeeeCHHHHHHHHHHcC--cEEEecccccceee
Q psy14030 4 GTTVLGAFDPIPAIADICAEYD--MWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~--~~~HvDaa~gg~~~ 39 (63)
-+|.+|.+.||++|+++|++++ +.+-||.+|+....
T Consensus 156 psNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~ 193 (395)
T PRK08114 156 PGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVL 193 (395)
T ss_pred CCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccc
Confidence 4678999999999999999984 99999999987554
No 129
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=95.73 E-value=0.013 Score=41.36 Aligned_cols=36 Identities=11% Similarity=0.187 Sum_probs=32.0
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.++.+|.+-|+++|+++|+++++++-+|.+|+....
T Consensus 164 p~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~ 199 (403)
T PRK07810 164 PSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLL 199 (403)
T ss_pred CCCCCCeecCHHHHHHHHHHcCCEEEEECCCCcccc
Confidence 467899999999999999999999999999985443
No 130
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=95.72 E-value=0.011 Score=41.83 Aligned_cols=35 Identities=11% Similarity=0.185 Sum_probs=30.2
Q ss_pred cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+ +++|.++|+++++++.+|-+|..+.
T Consensus 199 P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~ 236 (430)
T PLN00145 199 PNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLT 236 (430)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhc
Confidence 4789999998 7778888899999999999998754
No 131
>PRK06108 aspartate aminotransferase; Provisional
Probab=95.69 E-value=0.0064 Score=41.28 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=29.1
Q ss_pred cccceeeee---CHHHHHHHHHHcCcEEEecccccceee
Q psy14030 4 GTTVLGAFD---PIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~id---~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.+|.||.+- ++++|.++|+++++++.+|-+|+.+..
T Consensus 167 p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~ 205 (382)
T PRK06108 167 PNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYY 205 (382)
T ss_pred CCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhcc
Confidence 467788654 577888889999999999999987654
No 132
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=95.69 E-value=0.014 Score=40.69 Aligned_cols=35 Identities=17% Similarity=0.023 Sum_probs=31.4
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.+|.+-|+++|+++|+++++++-+|.+|+...
T Consensus 145 P~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~ 179 (364)
T PRK07269 145 PTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPI 179 (364)
T ss_pred CCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccc
Confidence 57789999999999999999999999999986543
No 133
>PLN02724 Molybdenum cofactor sulfurase
Probab=95.69 E-value=0.014 Score=44.54 Aligned_cols=54 Identities=19% Similarity=0.069 Sum_probs=35.6
Q ss_pred ccccceeeeeCHHHHHHHHHHc--------CcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030 3 PGTTVLGAFDPIPAIADICAEY--------DMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 3 ~Gtt~tG~id~i~~i~~i~~~~--------~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h 62 (63)
..++.+|.+.|+++|..+++.. ++++++|+||+....... +..+ .+|=+++++|
T Consensus 200 ~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~piD-----v~~~-~~Dfl~~S~H 261 (805)
T PLN02724 200 SECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSPPD-----LSRY-PADFVVVSFY 261 (805)
T ss_pred ccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCCCCC-----hhhc-CCCEEEEecc
Confidence 4578999999999876555532 357999999986555322 1111 2566666666
No 134
>PRK06234 methionine gamma-lyase; Provisional
Probab=95.66 E-value=0.012 Score=41.30 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=31.9
Q ss_pred cccceeeeeCHHHHHHHHHHc--CcEEEecccccceee
Q psy14030 4 GTTVLGAFDPIPAIADICAEY--DMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~--~~~~HvDaa~gg~~~ 39 (63)
.+|.+|.+.|+++|.++++++ ++++-+|.+|+.+..
T Consensus 158 P~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~ 195 (400)
T PRK06234 158 PANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYI 195 (400)
T ss_pred CCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhc
Confidence 578899999999999999997 899999999986543
No 135
>PRK05764 aspartate aminotransferase; Provisional
Probab=95.65 E-value=0.01 Score=40.57 Aligned_cols=34 Identities=29% Similarity=0.522 Sum_probs=28.5
Q ss_pred ccceeee---eCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 5 TTVLGAF---DPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 5 tt~tG~i---d~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
+|.||.+ +++++|.++|+++++++.+|.+|+.+.
T Consensus 174 ~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~ 210 (393)
T PRK05764 174 SNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLV 210 (393)
T ss_pred CCCCCcccCHHHHHHHHHHHHHCCcEEEEecccccee
Confidence 5678887 458888999999999999999998654
No 136
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=95.65 E-value=0.013 Score=40.39 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=30.1
Q ss_pred ccceeeeeC----HHHHHHHHHHcCcEEEeccccccee
Q psy14030 5 TTVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 5 tt~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+++|.+-| +++|.++|+++++++.+|-+|.|+.
T Consensus 193 ~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g 230 (398)
T PRK03244 193 QGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIG 230 (398)
T ss_pred cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCc
Confidence 567888877 8999999999999999999998754
No 137
>PRK05957 aspartate aminotransferase; Provisional
Probab=95.63 E-value=0.012 Score=40.55 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=31.2
Q ss_pred cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030 4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.+|.||.+.+ +++|+++|+++++++-+|.+|+.+..
T Consensus 169 p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~ 207 (389)
T PRK05957 169 PNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTY 207 (389)
T ss_pred CCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccC
Confidence 4788999888 88888999999999999999986643
No 138
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=95.63 E-value=0.013 Score=40.23 Aligned_cols=34 Identities=24% Similarity=0.470 Sum_probs=30.0
Q ss_pred ccceeeeeC----HHHHHHHHHHcCcEEEeccccccee
Q psy14030 5 TTVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 5 tt~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+++|.+-| +++|.++|++|++++.+|-+|.++.
T Consensus 188 ~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g 225 (400)
T PTZ00125 188 QGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLG 225 (400)
T ss_pred cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 467888887 9999999999999999999997653
No 139
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=95.61 E-value=0.016 Score=40.69 Aligned_cols=36 Identities=22% Similarity=0.118 Sum_probs=32.4
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.+|.||.+-|+++|.++|+++++++-+|.+|+.+..
T Consensus 146 P~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~ 181 (386)
T PRK08045 146 PSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPAL 181 (386)
T ss_pred CCCCCCEecCHHHHHHHHHHcCCEEEEECCCCcccc
Confidence 578899999999999999999999999999986543
No 140
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=95.60 E-value=0.013 Score=41.33 Aligned_cols=34 Identities=9% Similarity=0.035 Sum_probs=31.0
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~ 37 (63)
.+|.+|.+.++++|.++|+++++++-+|.+|+..
T Consensus 154 P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~ 187 (405)
T PRK08776 154 PSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSP 187 (405)
T ss_pred CCCCCCccCCHHHHHHHHHHcCCEEEEECCCccc
Confidence 4678999999999999999999999999999754
No 141
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=95.58 E-value=0.011 Score=40.93 Aligned_cols=35 Identities=29% Similarity=0.206 Sum_probs=30.8
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.+|.+.++++|+++|+++++++-+|.+|+..+
T Consensus 145 P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~ 179 (366)
T PRK08247 145 PTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPV 179 (366)
T ss_pred CCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcccc
Confidence 45678999999999999999999999999996544
No 142
>PRK07568 aspartate aminotransferase; Provisional
Probab=95.57 E-value=0.014 Score=40.02 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=29.6
Q ss_pred cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+ +++|.++|+++++++++|.+|+.+.
T Consensus 171 p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~ 208 (397)
T PRK07568 171 PGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFV 208 (397)
T ss_pred CCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcc
Confidence 4678998765 7888888999999999999998764
No 143
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=95.52 E-value=0.015 Score=40.68 Aligned_cols=31 Identities=16% Similarity=0.396 Sum_probs=28.7
Q ss_pred ccceeeeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030 5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWG 35 (63)
Q Consensus 5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~g 35 (63)
.+++|.+-|+++|.++|+++++++++|-+++
T Consensus 148 ~~~~G~i~~l~~i~~l~~~~g~~livDe~~~ 178 (392)
T PLN03227 148 YKNTGTLAPLKELVALKEEFHYRLILDESFS 178 (392)
T ss_pred cCCCCcccCHHHHHHHHHHcCCEEEEECccc
Confidence 3568999999999999999999999999997
No 144
>PRK09082 methionine aminotransferase; Validated
Probab=95.49 E-value=0.0093 Score=41.05 Aligned_cols=35 Identities=14% Similarity=0.217 Sum_probs=29.8
Q ss_pred ccceeee---eCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 5 TTVLGAF---DPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 5 tt~tG~i---d~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
++.||.+ +++++|.++|+++++++.+|.+|+.+..
T Consensus 173 ~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~ 210 (386)
T PRK09082 173 HNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVF 210 (386)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhcc
Confidence 5788876 7889999999999999999999976543
No 145
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=95.48 E-value=0.0065 Score=42.09 Aligned_cols=35 Identities=23% Similarity=0.087 Sum_probs=30.0
Q ss_pred ccccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
--+|.||.+.|+++|++ +++|+.+.||++|+....
T Consensus 144 h~~t~tG~~~pi~~I~~--~~~g~~~vVDa~qs~G~~ 178 (378)
T PRK03080 144 WNGTTTGVRVPVARWIG--ADREGLTICDATSAAFAL 178 (378)
T ss_pred ecCCccceeccchhhcc--ccCCCeEEEecccccccC
Confidence 34788999999999999 788999999999876544
No 146
>PLN02271 serine hydroxymethyltransferase
Probab=95.45 E-value=0.032 Score=41.94 Aligned_cols=50 Identities=12% Similarity=0.019 Sum_probs=37.3
Q ss_pred eeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030 10 AFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 10 ~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h 62 (63)
-.-|+++++++|+++|+++.+|+||.........+.. .++.+|-++...|
T Consensus 311 r~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~s---P~~~aDvvt~TTH 360 (586)
T PLN02271 311 REWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVN---PFDYCDIVTSTTH 360 (586)
T ss_pred CcCCHHHHHHHHHHcCCEEEEECcccccccccCcCCC---CCcCCcEEEeCCc
Confidence 3457999999999999999999999766654443332 2335788887776
No 147
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=95.37 E-value=0.014 Score=41.91 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=22.1
Q ss_pred eeCHHHHHHHHHHcCcEEEecccccc
Q psy14030 11 FDPIPAIADICAEYDMWLHVDAAWGG 36 (63)
Q Consensus 11 id~i~~i~~i~~~~~~~~HvDaa~gg 36 (63)
.+++++|+++|++++++++.|+|...
T Consensus 172 ~~~l~~i~eia~~~gi~li~DaAr~~ 197 (431)
T cd00617 172 MANLREVRELAHKYGIPVVLDAARFA 197 (431)
T ss_pred HHHHHHHHHHHHHcCCEEEEEchhhH
Confidence 34677889999999999999999654
No 148
>PLN02822 serine palmitoyltransferase
Probab=95.36 E-value=0.018 Score=41.47 Aligned_cols=30 Identities=17% Similarity=0.327 Sum_probs=28.4
Q ss_pred cceeeeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030 6 TVLGAFDPIPAIADICAEYDMWLHVDAAWG 35 (63)
Q Consensus 6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~g 35 (63)
+++|.+-|+++|+++|++|++++-+|-+|+
T Consensus 256 ~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s 285 (481)
T PLN02822 256 QNSGQIAPLDEIVRLKEKYRFRVLLDESNS 285 (481)
T ss_pred CCCCCccCHHHHHHHHHHcCCEEEEECCcc
Confidence 558999999999999999999999999998
No 149
>PLN02624 ornithine-delta-aminotransferase
Probab=95.35 E-value=0.036 Score=39.89 Aligned_cols=34 Identities=21% Similarity=0.385 Sum_probs=29.9
Q ss_pred ccceeeeeC----HHHHHHHHHHcCcEEEeccccccee
Q psy14030 5 TTVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 5 tt~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+++|.+-| +++|.++|++||+++.+|-+|.|+.
T Consensus 234 ~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~G 271 (474)
T PLN02624 234 QGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLA 271 (474)
T ss_pred cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcC
Confidence 457788877 9999999999999999999998754
No 150
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=95.35 E-value=0.018 Score=38.91 Aligned_cols=35 Identities=26% Similarity=0.264 Sum_probs=28.9
Q ss_pred cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+ +++|+++|+++++++.+|-+|..+.
T Consensus 134 p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~ 171 (330)
T TIGR01140 134 PNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFT 171 (330)
T ss_pred CCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccC
Confidence 4788999988 5556677788999999999998765
No 151
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=95.30 E-value=0.023 Score=39.78 Aligned_cols=35 Identities=17% Similarity=0.098 Sum_probs=31.8
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-|+++|.++|+++++++-+|.+|+.+.
T Consensus 145 p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~ 179 (382)
T TIGR02080 145 PSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPA 179 (382)
T ss_pred CCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccc
Confidence 57899999999999999999999999999997543
No 152
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=95.29 E-value=0.02 Score=39.20 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=28.8
Q ss_pred ccceeeeeC----HHHHHHHHHHcCcEEEecccccce
Q psy14030 5 TTVLGAFDP----IPAIADICAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 5 tt~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~ 37 (63)
.+.+|.+-| +++|.++|+++++++.+|-++.++
T Consensus 201 ~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~ 237 (413)
T cd00610 201 QGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGF 237 (413)
T ss_pred cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 455688777 999999999999999999999875
No 153
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=95.24 E-value=0.021 Score=39.43 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=29.9
Q ss_pred ccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
++.+|...++++|.++|+++++++-+|++|+.+.
T Consensus 126 ~~~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~ 159 (375)
T PRK11706 126 VHYAGVACEMDTIMALAKKHNLFVVEDAAQGVMS 159 (375)
T ss_pred eCCCCCccCHHHHHHHHHHcCCEEEEECcccccc
Confidence 4568888999999999999999999999997554
No 154
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=95.23 E-value=0.02 Score=39.45 Aligned_cols=34 Identities=18% Similarity=0.327 Sum_probs=29.4
Q ss_pred ccceeeeeC----HHHHHHHHHHcCcEEEeccccccee
Q psy14030 5 TTVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 5 tt~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+++|.+-| +++|+++|+++++++-+|.+|.|+.
T Consensus 197 ~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g 234 (401)
T PRK00854 197 QGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLG 234 (401)
T ss_pred cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCC
Confidence 456787776 9999999999999999999998753
No 155
>PRK07550 hypothetical protein; Provisional
Probab=95.21 E-value=0.02 Score=39.26 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=29.3
Q ss_pred cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+ +++|.++|+++++++.+|.+|+.+.
T Consensus 172 P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~ 209 (386)
T PRK07550 172 PNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFD 209 (386)
T ss_pred CCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhc
Confidence 3578888765 7888999999999999999998653
No 156
>PLN02483 serine palmitoyltransferase
Probab=95.08 E-value=0.024 Score=40.98 Aligned_cols=31 Identities=23% Similarity=0.538 Sum_probs=28.7
Q ss_pred cceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030 6 TVLGAFDPIPAIADICAEYDMWLHVDAAWGG 36 (63)
Q Consensus 6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~gg 36 (63)
+.+|.+.++++|.++|+++++++.+|-+|+.
T Consensus 251 s~~G~~~~l~~I~~la~~~~~~livDEa~s~ 281 (489)
T PLN02483 251 SMEGELCKLPEIVAVCKKYKAYVYLDEAHSI 281 (489)
T ss_pred CCCCcccCHHHHHHHHHHcCCEEEEECcCcc
Confidence 6688999999999999999999999999973
No 157
>PRK09265 aminotransferase AlaT; Validated
Probab=94.95 E-value=0.025 Score=39.14 Aligned_cols=35 Identities=14% Similarity=0.219 Sum_probs=30.6
Q ss_pred cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+ +++|.++|+++++++.+|-+|..+.
T Consensus 177 P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~ 214 (404)
T PRK09265 177 PNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKIL 214 (404)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhcc
Confidence 4788999888 8888899999999999999998654
No 158
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=94.92 E-value=0.029 Score=38.87 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=29.2
Q ss_pred ccceeeeeC----HHHHHHHHHHcCcEEEeccccccee
Q psy14030 5 TTVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 5 tt~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+++|.+-| +++|.++|+++++++.+|-+|.++.
T Consensus 196 ~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g 233 (396)
T PRK04073 196 QGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLG 233 (396)
T ss_pred cCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCC
Confidence 467787755 8999999999999999999999864
No 159
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=94.77 E-value=0.039 Score=42.25 Aligned_cols=54 Identities=20% Similarity=0.162 Sum_probs=40.1
Q ss_pred cceeeeeCHHHHHHHHHHcCcE-EEecccccceeeecccchhhh--CCCCCCcee---EecCC
Q psy14030 6 TVLGAFDPIPAIADICAEYDMW-LHVDAAWGGGALVSRKHRHLL--TGIERPQNR---SEDTP 62 (63)
Q Consensus 6 t~tG~id~i~~i~~i~~~~~~~-~HvDaa~gg~~~~~~~~~~~~--~~i~~adSi---~~d~h 62 (63)
|.-|.+-++++|++++ ++. +|+|-|||+.+.|.+.+++.. .+...+|.. +-|.|
T Consensus 307 TYdGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~~~sam~~~~~aD~~i~~tQStH 366 (713)
T PRK15399 307 TYDGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQGKSGMSGERVPGKVIFETQSTH 366 (713)
T ss_pred CCCceeeCHHHHHHHh---CCCEEEEeccchhhhhcCcccCCcChhhCCCCCCeeeeeeeehh
Confidence 6789999999999999 555 599999999998888665322 222346776 66666
No 160
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=94.74 E-value=0.062 Score=37.23 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=28.3
Q ss_pred cceeeeeC----HHHHHHHHHHcCcEEEeccccccee
Q psy14030 6 TVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 6 t~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
+++|.+-| +++|.++|+++++++.+|-++.|+.
T Consensus 197 ~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g 233 (401)
T TIGR01885 197 GEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLG 233 (401)
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCC
Confidence 45677777 9999999999999999999987653
No 161
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=94.63 E-value=0.045 Score=37.80 Aligned_cols=36 Identities=22% Similarity=0.403 Sum_probs=29.9
Q ss_pred cccceeee---eCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 4 GTTVLGAF---DPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~i---d~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.+|.||.+ +++++|.++|+++++++.+|.+|+.+..
T Consensus 175 P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~ 213 (391)
T PRK07309 175 PANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTY 213 (391)
T ss_pred CCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceee
Confidence 47788975 4588888999999999999999987653
No 162
>PRK06225 aspartate aminotransferase; Provisional
Probab=94.61 E-value=0.029 Score=38.45 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=28.2
Q ss_pred cccceeee---eCHHHHHHHHHHcCcEEEecccccce
Q psy14030 4 GTTVLGAF---DPIPAIADICAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 4 Gtt~tG~i---d~i~~i~~i~~~~~~~~HvDaa~gg~ 37 (63)
.+|.||.+ +++++|.++|+++++++.+|.+|..+
T Consensus 166 p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~ 202 (380)
T PRK06225 166 PLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDF 202 (380)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHH
Confidence 35678885 45888999999999999999998754
No 163
>PRK08912 hypothetical protein; Provisional
Probab=94.56 E-value=0.036 Score=38.05 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=29.0
Q ss_pred cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+ +++|.++|+++++++.+|-+|+.+.
T Consensus 168 p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~ 205 (387)
T PRK08912 168 PLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVV 205 (387)
T ss_pred CCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcc
Confidence 4788998776 6668888999999999999997543
No 164
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=94.53 E-value=0.015 Score=40.23 Aligned_cols=35 Identities=26% Similarity=0.277 Sum_probs=29.5
Q ss_pred CccccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 2 FPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 2 t~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
|-..|.||.+.|+++| ++++++.+-||++|.....
T Consensus 135 ~h~et~tG~~~pi~~I---~~~~g~~~iVDavqs~g~~ 169 (361)
T TIGR01366 135 AHNETSTGVAVPVRRP---EGSDDALVVIDATSGAGGL 169 (361)
T ss_pred cccCCccceecccccc---cccCCCeEEEEcCccccCC
Confidence 4578999999999988 4788999999999876544
No 165
>PRK08363 alanine aminotransferase; Validated
Probab=94.49 E-value=0.038 Score=38.15 Aligned_cols=35 Identities=23% Similarity=0.211 Sum_probs=29.6
Q ss_pred cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+ +++|.++|+++++++.+|.+|+.+.
T Consensus 175 p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~ 212 (398)
T PRK08363 175 PNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMT 212 (398)
T ss_pred CCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhc
Confidence 4678898766 8888889999999999999998653
No 166
>PRK10534 L-threonine aldolase; Provisional
Probab=94.46 E-value=0.037 Score=37.05 Aligned_cols=32 Identities=28% Similarity=0.263 Sum_probs=25.4
Q ss_pred cccceeeeeCHHHHH---HHHHHcCcEEEeccccc
Q psy14030 4 GTTVLGAFDPIPAIA---DICAEYDMWLHVDAAWG 35 (63)
Q Consensus 4 Gtt~tG~id~i~~i~---~i~~~~~~~~HvDaa~g 35 (63)
.|+.+|.+-|.++|. ++|+++++++++|-||.
T Consensus 136 ~np~~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~ 170 (333)
T PRK10534 136 ENTHNGKVLPREYLKQAWEFTRERNLALHVDGARI 170 (333)
T ss_pred ecCCCCeecCHHHHHHHHHHHHHcCCeEEeeHHHH
Confidence 356679988877665 57778899999999876
No 167
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=94.44 E-value=0.043 Score=42.05 Aligned_cols=38 Identities=21% Similarity=0.118 Sum_probs=33.9
Q ss_pred cceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccch
Q psy14030 6 TVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHR 45 (63)
Q Consensus 6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~ 45 (63)
|.-|.+-++++|++++..++ +|+|-|||+.+.|.+.++
T Consensus 307 TYdG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~ 344 (714)
T PRK15400 307 TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYE 344 (714)
T ss_pred CCccEecCHHHHHHHhCCCC--EEEEccchhhhccCcccC
Confidence 67899999999999998776 899999999998888765
No 168
>PRK13578 ornithine decarboxylase; Provisional
Probab=94.41 E-value=0.046 Score=41.89 Aligned_cols=38 Identities=21% Similarity=0.215 Sum_probs=33.2
Q ss_pred cceeeeeCHHHHHHH-HHHcCcEEEecccccceeeecccc
Q psy14030 6 TVLGAFDPIPAIADI-CAEYDMWLHVDAAWGGGALVSRKH 44 (63)
Q Consensus 6 t~tG~id~i~~i~~i-~~~~~~~~HvDaa~gg~~~~~~~~ 44 (63)
|.-|.+-++++|+++ +++.+ ++|+|-|||+.+.|.+.+
T Consensus 292 TYdG~~ydi~~I~~~~~h~~~-~llvDEAhgah~~F~p~~ 330 (720)
T PRK13578 292 TYDGTIYNARQVVDKIGHLCD-YILFDSAWVGYEQFIPMM 330 (720)
T ss_pred CCcceeecHHHHHHHhhccCC-cEEEeCcchhhhccCccc
Confidence 677999999999999 56677 999999999999888754
No 169
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=94.30 E-value=0.053 Score=36.80 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=30.1
Q ss_pred cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+ +++|.++|+++++++-+|.+|+.+.
T Consensus 145 p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~ 182 (350)
T TIGR03537 145 PHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIY 182 (350)
T ss_pred CCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccc
Confidence 5789998888 8888888999999999999998643
No 170
>PRK07682 hypothetical protein; Validated
Probab=94.20 E-value=0.051 Score=37.10 Aligned_cols=36 Identities=19% Similarity=0.167 Sum_probs=30.1
Q ss_pred cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030 4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.+|.||.+-+ +++|.++|+++++++.+|-+|+.+..
T Consensus 163 p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~ 201 (378)
T PRK07682 163 PNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTY 201 (378)
T ss_pred CCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhccc
Confidence 4688898754 88888899999999999999997653
No 171
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=94.20 E-value=0.049 Score=39.19 Aligned_cols=34 Identities=12% Similarity=-0.016 Sum_probs=30.1
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~ 37 (63)
.++.++.+-|+++|+++|+++|+++-+|.+|+..
T Consensus 156 pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~tP 189 (432)
T PRK06702 156 LGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATP 189 (432)
T ss_pred CCCccccccCHHHHHHHHHHcCCEEEEECCCCch
Confidence 3577888889999999999999999999999743
No 172
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=94.19 E-value=0.048 Score=36.59 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=30.8
Q ss_pred cccceeeeeCHHHHHHHHHHc--CcEEEeccccccee
Q psy14030 4 GTTVLGAFDPIPAIADICAEY--DMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~--~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-|++++.++++.. ++++.+|.+|+.+.
T Consensus 151 p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~~~~ 187 (346)
T TIGR01141 151 PNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGEFS 187 (346)
T ss_pred CCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhhc
Confidence 468999999999999999987 99999999998543
No 173
>PRK12414 putative aminotransferase; Provisional
Probab=94.11 E-value=0.036 Score=38.19 Aligned_cols=35 Identities=9% Similarity=0.118 Sum_probs=29.6
Q ss_pred cccceeee---eCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAF---DPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~i---d~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+ +++++|.++|+++++++-+|.+|.-+.
T Consensus 171 p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~ 208 (384)
T PRK12414 171 PHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVV 208 (384)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhcc
Confidence 46888986 678888999999999999999998643
No 174
>PRK07683 aminotransferase A; Validated
Probab=94.10 E-value=0.045 Score=37.74 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=29.6
Q ss_pred cccceeeee---CHHHHHHHHHHcCcEEEecccccceee
Q psy14030 4 GTTVLGAFD---PIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~id---~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.+|.||.+- ++++|.++|+++++++.+|.+|..+..
T Consensus 170 p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~ 208 (387)
T PRK07683 170 PSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVY 208 (387)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccccccee
Confidence 467888874 478888899999999999999997643
No 175
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=94.02 E-value=0.059 Score=36.95 Aligned_cols=34 Identities=29% Similarity=0.413 Sum_probs=28.5
Q ss_pred ccceeeeeC----HHHHHHHHHHcCcEEEeccccccee
Q psy14030 5 TTVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 5 tt~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
++++|.+.+ ++++.++|+++++++.+|-++.|+.
T Consensus 175 ~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g 212 (375)
T PRK04260 175 QGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMG 212 (375)
T ss_pred ECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCC
Confidence 455677655 8999999999999999999998754
No 176
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=94.02 E-value=0.051 Score=38.82 Aligned_cols=33 Identities=24% Similarity=0.432 Sum_probs=28.3
Q ss_pred cceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 6 TVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
+..|...++++|.++|+++++++.+|++|+...
T Consensus 167 ~~~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~ 199 (438)
T PRK15407 167 HTLGNPFDLAAVKAFCDKHNLWLIEDNCDALGS 199 (438)
T ss_pred CCCCChhhHHHHHHHHHHCCCEEEEECccchhh
Confidence 346777899999999999999999999986543
No 177
>PLN00175 aminotransferase family protein; Provisional
Probab=94.01 E-value=0.048 Score=38.20 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=29.3
Q ss_pred cccceeeee---CHHHHHHHHHHcCcEEEecccccceee
Q psy14030 4 GTTVLGAFD---PIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~id---~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.+|.||.+- .+++|.++|+++++|+.+|-+|..+..
T Consensus 196 p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~ 234 (413)
T PLN00175 196 PHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAF 234 (413)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCcccc
Confidence 467888875 477788888999999999999987643
No 178
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=93.87 E-value=0.069 Score=36.19 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHcCcEEEeccccccee
Q psy14030 13 PIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 13 ~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
++++|.++|+++++++.+|.+|.++.
T Consensus 192 ~l~~i~~l~~~~~~~~i~De~~~~~~ 217 (379)
T TIGR00707 192 FLKALREICKDKDALLIFDEVQTGIG 217 (379)
T ss_pred HHHHHHHHHHHcCCEEEEeccccCCC
Confidence 48999999999999999999998753
No 179
>KOG0053|consensus
Probab=93.87 E-value=0.067 Score=38.73 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=32.6
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.+|.+..+-||++|+++|+++|+.+-||.++++++.
T Consensus 171 PsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~ 206 (409)
T KOG0053|consen 171 PSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYN 206 (409)
T ss_pred CCCCccccccHHHHHHHHhhCCCEEEEeCCcCcccc
Confidence 467888999999999999999999999999998743
No 180
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=93.75 E-value=0.077 Score=36.32 Aligned_cols=35 Identities=26% Similarity=0.379 Sum_probs=29.2
Q ss_pred cccceeeeeCH---HHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPI---PAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i---~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+. ++|.++|+++++++.+|-+|..+.
T Consensus 175 p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~ 212 (385)
T PRK09276 175 PNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIA 212 (385)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhhee
Confidence 46889998885 677777889999999999998764
No 181
>PRK05942 aspartate aminotransferase; Provisional
Probab=93.74 E-value=0.069 Score=36.87 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=29.9
Q ss_pred cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+ +++|.++|+++++++-+|-+|+.+.
T Consensus 179 P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~ 216 (394)
T PRK05942 179 PSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELA 216 (394)
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhc
Confidence 4788999887 7788888999999999999998654
No 182
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=93.73 E-value=0.065 Score=37.02 Aligned_cols=35 Identities=11% Similarity=0.140 Sum_probs=29.3
Q ss_pred cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+ +++|.++|+++++++.+|-+|..+.
T Consensus 177 p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~ 214 (401)
T TIGR01264 177 PSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMV 214 (401)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhc
Confidence 4678998854 7778888889999999999998765
No 183
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=93.68 E-value=0.07 Score=38.18 Aligned_cols=34 Identities=29% Similarity=0.590 Sum_probs=30.2
Q ss_pred cceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 6 TVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
++.|.+=|+++|.+++++|+.|+-||=|++..++
T Consensus 182 SMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~ 215 (388)
T COG0156 182 SMDGDIAPLPELVELAEKYGALLYVDEAHAVGVL 215 (388)
T ss_pred cCCCCcCCHHHHHHHHHHhCcEEEEEcccccccc
Confidence 4678899999999999999999999999886554
No 184
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=93.63 E-value=0.073 Score=36.42 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=29.7
Q ss_pred cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+ +++|.++|+++++++-+|-+|..+.
T Consensus 173 P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~ 210 (383)
T TIGR03540 173 PNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEIT 210 (383)
T ss_pred CCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhc
Confidence 4788999888 6888888999999999999998654
No 185
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=93.61 E-value=0.077 Score=36.14 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=30.1
Q ss_pred cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+ +++|+++|+++++++-+|.+|..+.
T Consensus 151 p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~ 188 (356)
T PRK08056 151 PNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFI 188 (356)
T ss_pred CcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccC
Confidence 4788999888 7788888999999999999997764
No 186
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=93.60 E-value=0.067 Score=38.57 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=30.2
Q ss_pred cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+ +++|.++|+++++++.+|-+|.-+.
T Consensus 290 P~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~ 327 (517)
T PRK13355 290 PNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLV 327 (517)
T ss_pred CCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhc
Confidence 4789999888 7888888999999999999998654
No 187
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=93.59 E-value=0.083 Score=36.78 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=28.4
Q ss_pred cccceeeee---CHHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFD---PIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id---~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+- .+++|.++|+++++++.+|-+|..+.
T Consensus 186 p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~ 223 (412)
T PTZ00433 186 PSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMV 223 (412)
T ss_pred CCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccc
Confidence 467888754 47777888899999999999998654
No 188
>PRK07777 aminotransferase; Validated
Probab=93.50 E-value=0.087 Score=36.16 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=29.5
Q ss_pred cccceeeee---CHHHHHHHHHHcCcEEEecccccceee
Q psy14030 4 GTTVLGAFD---PIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~id---~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.++.||.+- ++++|.++|+++++++.+|-+|..+..
T Consensus 168 p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~ 206 (387)
T PRK07777 168 PHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVF 206 (387)
T ss_pred CCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhccc
Confidence 357888864 588889999999999999999986553
No 189
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=93.48 E-value=0.091 Score=37.76 Aligned_cols=56 Identities=13% Similarity=0.098 Sum_probs=35.1
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h 62 (63)
|.+..=-.-|+++++++|++.|.++++|+++-........++..+ +.+|-++.+.|
T Consensus 176 G~S~y~~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~---~~ADvvt~sTh 231 (399)
T PF00464_consen 176 GASSYPRPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPF---PYADVVTGSTH 231 (399)
T ss_dssp E-SSTSS---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GC---CTSSEEEEESS
T ss_pred CchhccCccCHHHHHHHHHhcCcEEEecccccccceehheecCcc---ccceEEEeecc
Confidence 333333456899999999999999999999865555444444333 45888888877
No 190
>PRK08175 aminotransferase; Validated
Probab=93.30 E-value=0.083 Score=36.48 Aligned_cols=35 Identities=11% Similarity=0.182 Sum_probs=28.9
Q ss_pred cccceeeeeCH---HHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPI---PAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i---~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+. ++|.++|+++++++.+|-+|+.+.
T Consensus 173 p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~ 210 (395)
T PRK08175 173 PSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIV 210 (395)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhc
Confidence 36789987776 788888899999999999997644
No 191
>PRK08354 putative aminotransferase; Provisional
Probab=93.22 E-value=0.093 Score=35.18 Aligned_cols=35 Identities=17% Similarity=0.150 Sum_probs=27.4
Q ss_pred cccceeeeeCHHHH---HHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPIPAI---ADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i~~i---~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+.+++ .++|+++++|+.+|-+|..|.
T Consensus 126 P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~ 163 (311)
T PRK08354 126 PNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFV 163 (311)
T ss_pred CCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhcc
Confidence 46889998775555 555678899999999998764
No 192
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=93.17 E-value=0.07 Score=36.71 Aligned_cols=38 Identities=26% Similarity=0.133 Sum_probs=26.2
Q ss_pred ccccceeeeeCHHHHHHHHHHcCcEEEecccccceeee
Q psy14030 3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALV 40 (63)
Q Consensus 3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~ 40 (63)
+-+...|...++++|.++|+++|+++-.|+|++.....
T Consensus 118 ~~~h~~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~ 155 (363)
T PF01041_consen 118 LVVHLFGNPADMDAIRAIARKHGIPLIEDAAQAFGARY 155 (363)
T ss_dssp EEE-GGGB---HHHHHHHHHHTT-EEEEE-TTTTT-EE
T ss_pred EEecCCCCcccHHHHHHHHHHcCCcEEEccccccCcee
Confidence 34567788899999999999999999999999875543
No 193
>PRK03321 putative aminotransferase; Provisional
Probab=93.07 E-value=0.09 Score=35.50 Aligned_cols=36 Identities=14% Similarity=0.082 Sum_probs=31.3
Q ss_pred cccceeeeeCHHHHHHHHHH--cCcEEEecccccceee
Q psy14030 4 GTTVLGAFDPIPAIADICAE--YDMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~--~~~~~HvDaa~gg~~~ 39 (63)
.++.||.+-|.+++.+++++ +++++.+|.+|..+..
T Consensus 154 p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~ 191 (352)
T PRK03321 154 PNNPTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVR 191 (352)
T ss_pred CCCCcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhcc
Confidence 46889999999999999987 5899999999987654
No 194
>PRK06434 cystathionine gamma-lyase; Validated
Probab=93.07 E-value=0.11 Score=36.68 Aligned_cols=32 Identities=25% Similarity=0.329 Sum_probs=26.8
Q ss_pred ccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
++.++.+.|+++|+++|+++++ -||++|+...
T Consensus 158 snpt~~v~Di~~I~~la~~~~l--vVD~t~~s~~ 189 (384)
T PRK06434 158 TNPTLKVPDIKNVSSFCHENDV--IVDATFASPY 189 (384)
T ss_pred CCCCceeecHHHHHHHHHHcCe--EEECCCCCcc
Confidence 5678899999999999999984 5699987543
No 195
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=93.01 E-value=0.17 Score=36.63 Aligned_cols=27 Identities=15% Similarity=0.080 Sum_probs=24.3
Q ss_pred eeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030 10 AFDPIPAIADICAEYDMWLHVDAAWGG 36 (63)
Q Consensus 10 ~id~i~~i~~i~~~~~~~~HvDaa~gg 36 (63)
.+-|+++|+++|+++|+.+.+|++.|.
T Consensus 230 ~~~dl~~I~~la~~~g~~vivD~~sG~ 256 (454)
T TIGR00474 230 EEVSIAELVALGREHGLPVMEDLGSGS 256 (454)
T ss_pred CCCCHHHHHHHHHHcCCeEEEECCCcc
Confidence 478999999999999999999997654
No 196
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=92.97 E-value=0.097 Score=35.48 Aligned_cols=35 Identities=17% Similarity=0.267 Sum_probs=30.6
Q ss_pred cccceeeeeCHHHHHHHHHHc--CcEEEeccccccee
Q psy14030 4 GTTVLGAFDPIPAIADICAEY--DMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~--~~~~HvDaa~gg~~ 38 (63)
.++.||.+-+.+++.++++.. ++++.+|.+|..+.
T Consensus 163 p~nptG~~~~~~~l~~l~~~~~~~~~li~De~y~~~~ 199 (367)
T PRK02731 163 PNNPTGTYLPAEEVERFLAGVPPDVLVVLDEAYAEYV 199 (367)
T ss_pred CCCCCCcCCCHHHHHHHHHhCCCCcEEEEECcHHHhc
Confidence 468999999999999999875 89999999987654
No 197
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=92.95 E-value=0.12 Score=36.13 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=29.5
Q ss_pred cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030 4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.+|.||.+-+ +++|.++|+++++++.+|-+|..+..
T Consensus 179 P~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~ 217 (409)
T PLN00143 179 PGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVF 217 (409)
T ss_pred CCCCCCCccCHHHHHHHHHHHHHcCCeEEEEcccccccc
Confidence 4788999877 66677778899999999999987653
No 198
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=92.94 E-value=0.12 Score=36.31 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=28.8
Q ss_pred cceeeeeC----HHHHHHHHHHcCcEEEecccccceee
Q psy14030 6 TVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 6 t~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.+.|.+-| +++|+++|+++++.+.+|-+|.|+..
T Consensus 190 ~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GR 227 (395)
T PRK03715 190 GEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGR 227 (395)
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCC
Confidence 45566766 99999999999999999999998543
No 199
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=92.92 E-value=0.11 Score=35.40 Aligned_cols=35 Identities=14% Similarity=0.023 Sum_probs=27.8
Q ss_pred cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+ +++|.++|+++++++.+|.+|+.+.
T Consensus 151 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~ 188 (357)
T TIGR03539 151 PGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELG 188 (357)
T ss_pred CCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhc
Confidence 4678887655 6668888899999999999997543
No 200
>PRK07681 aspartate aminotransferase; Provisional
Probab=92.46 E-value=0.15 Score=35.27 Aligned_cols=36 Identities=8% Similarity=0.050 Sum_probs=30.0
Q ss_pred cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030 4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.+|.||.+-+ +++|.++|+++++++-+|-+|+.+..
T Consensus 175 P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~ 213 (399)
T PRK07681 175 PGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYF 213 (399)
T ss_pred CCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhee
Confidence 4788999877 67777788999999999999997653
No 201
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=92.42 E-value=0.11 Score=36.81 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=27.9
Q ss_pred ccceeeeeCHHHHHHHHHHcC-cEEEecccccceeee
Q psy14030 5 TTVLGAFDPIPAIADICAEYD-MWLHVDAAWGGGALV 40 (63)
Q Consensus 5 tt~tG~id~i~~i~~i~~~~~-~~~HvDaa~gg~~~~ 40 (63)
+|.+.-+-||++|+++++++| +.+-||.+++..+.+
T Consensus 150 sNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~~~ 186 (386)
T PF01053_consen 150 SNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATPYNQ 186 (386)
T ss_dssp BTTTTB---HHHHHHHHHHTTT-EEEEECTTTHTTTC
T ss_pred CCcccccccHHHHHHHHHHhCCceEEeeccccceeee
Confidence 566788999999999999998 999999999987554
No 202
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=92.42 E-value=0.16 Score=34.68 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=28.6
Q ss_pred cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+ +.+|.++|+++++++-+|-+|..+.
T Consensus 150 P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~ 187 (354)
T PRK06358 150 PNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFL 187 (354)
T ss_pred CCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccC
Confidence 4788888776 6677777889999999999998655
No 203
>PRK04311 selenocysteine synthase; Provisional
Probab=92.42 E-value=0.28 Score=35.68 Aligned_cols=28 Identities=14% Similarity=0.037 Sum_probs=24.3
Q ss_pred eeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030 10 AFDPIPAIADICAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 10 ~id~i~~i~~i~~~~~~~~HvDaa~gg~ 37 (63)
..-|+++|+++|+++|+.+.+|++.|.+
T Consensus 235 ~~~dl~eI~~lak~~gi~vivD~gsG~l 262 (464)
T PRK04311 235 KEVSLAELAALGKEHGLPVVYDLGSGSL 262 (464)
T ss_pred CcCCHHHHHHHHHHcCCeEEEECCCccc
Confidence 4679999999999999999999975543
No 204
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=92.37 E-value=0.18 Score=35.12 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=24.6
Q ss_pred eeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 11 FDPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 11 id~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+.+++|+++|+++|+++.+|=+|.|+.
T Consensus 199 ~~~l~~l~~lc~~~g~llI~DEv~tG~G 226 (397)
T TIGR03246 199 PAFLKGLRELCDRHNALLIFDEVQTGVG 226 (397)
T ss_pred HHHHHHHHHHHHHcCCEEEEechhhcCC
Confidence 3559999999999999999999997763
No 205
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=92.37 E-value=0.16 Score=34.13 Aligned_cols=34 Identities=24% Similarity=0.200 Sum_probs=30.2
Q ss_pred cccceeeeeCHHHHHHHHHHc-CcEEEecccccce
Q psy14030 4 GTTVLGAFDPIPAIADICAEY-DMWLHVDAAWGGG 37 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~-~~~~HvDaa~gg~ 37 (63)
.+|.||.+-+.+++.++++++ ++++.+|-+|..+
T Consensus 153 P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~~ 187 (353)
T PRK05387 153 PNAPTGIALPLAEIERILAANPDSVVVIDEAYVDF 187 (353)
T ss_pred CCCCCCCCCCHHHHHHHHHhCCCcEEEEeCccccc
Confidence 579999999999999999876 8999999998654
No 206
>PRK07337 aminotransferase; Validated
Probab=92.36 E-value=0.17 Score=34.79 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=28.5
Q ss_pred cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+ +++|.++|+++++++-+|-+|..+.
T Consensus 172 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~ 209 (388)
T PRK07337 172 PSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLS 209 (388)
T ss_pred CCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccc
Confidence 4678998665 6777788889999999999988654
No 207
>KOG1359|consensus
Probab=92.36 E-value=0.16 Score=36.27 Aligned_cols=34 Identities=21% Similarity=0.488 Sum_probs=30.0
Q ss_pred cceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 6 TVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
++-|-+-|+++|.+++++||..+-+|-+++-++.
T Consensus 204 SMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~ 237 (417)
T KOG1359|consen 204 SMDGDIAPLEEISQLAKKYGALLFIDECHATGFF 237 (417)
T ss_pred ccCCCcccHHHHHHHHHhcCcEEEEeecccceee
Confidence 4568899999999999999999999999987664
No 208
>PRK08960 hypothetical protein; Provisional
Probab=92.32 E-value=0.17 Score=34.76 Aligned_cols=35 Identities=17% Similarity=0.116 Sum_probs=27.8
Q ss_pred cccceeeeeCHH---HHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPIP---AIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i~---~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+.+ +|+++|+++++++-+|-+|..+.
T Consensus 174 p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~ 211 (387)
T PRK08960 174 PANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLT 211 (387)
T ss_pred CCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence 478899987755 55556788999999999998753
No 209
>PRK09148 aminotransferase; Validated
Probab=92.05 E-value=0.16 Score=35.32 Aligned_cols=35 Identities=9% Similarity=0.077 Sum_probs=29.1
Q ss_pred cccceeeeeCH---HHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPI---PAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i---~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+. ++|.++|+++++++-+|-+|+.+.
T Consensus 174 P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~ 211 (405)
T PRK09148 174 PSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIY 211 (405)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhh
Confidence 47889998886 567777889999999999998764
No 210
>PRK06348 aspartate aminotransferase; Provisional
Probab=92.01 E-value=0.21 Score=34.39 Aligned_cols=36 Identities=28% Similarity=0.462 Sum_probs=29.1
Q ss_pred cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030 4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.+|.||.+-+ +++|.++|+++++++.+|-+|..+..
T Consensus 171 p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~ 209 (384)
T PRK06348 171 PNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSF 209 (384)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCCeEEEEeccccccee
Confidence 3677887765 67777788899999999999998654
No 211
>PRK06207 aspartate aminotransferase; Provisional
Probab=91.94 E-value=0.21 Score=34.78 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=29.3
Q ss_pred cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+ +++|.++|+++++++-+|-+|..+.
T Consensus 187 P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~ 224 (405)
T PRK06207 187 PNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLL 224 (405)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccc
Confidence 4788999887 6667778889999999999998754
No 212
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=91.93 E-value=0.11 Score=35.36 Aligned_cols=35 Identities=9% Similarity=-0.006 Sum_probs=28.1
Q ss_pred cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+ +++|.++|+++++++-+|-+|+.+.
T Consensus 157 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~ 194 (364)
T PRK07865 157 PSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELG 194 (364)
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhc
Confidence 4678887644 6777788899999999999998654
No 213
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=91.84 E-value=0.18 Score=35.57 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=31.1
Q ss_pred CccccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030 2 FPGTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 2 t~Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
+-.+|.||++=+ +++|+++|+++++|+-+|-+|..+..
T Consensus 170 n~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~y 210 (393)
T COG0436 170 NSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVY 210 (393)
T ss_pred eCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhccc
Confidence 346889998766 66777788899999999999987665
No 214
>PRK06290 aspartate aminotransferase; Provisional
Probab=91.79 E-value=0.2 Score=35.22 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=29.1
Q ss_pred cccceeeeeCH---HHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPI---PAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i---~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+. ++|.++|+++++++-+|-+|+.+.
T Consensus 188 P~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~ 225 (410)
T PRK06290 188 PNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALT 225 (410)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhce
Confidence 47899998885 666667889999999999999764
No 215
>PTZ00377 alanine aminotransferase; Provisional
Probab=91.78 E-value=0.16 Score=36.24 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=29.7
Q ss_pred cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+ +++|+++|+++++++-+|-+|..+.
T Consensus 227 P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~ 264 (481)
T PTZ00377 227 PGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENI 264 (481)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhc
Confidence 3688999888 7888888899999999999998644
No 216
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=91.52 E-value=0.14 Score=34.99 Aligned_cols=26 Identities=23% Similarity=0.426 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHcCcEEEeccccccee
Q psy14030 13 PIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 13 ~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+++|.++|+++++++.+|-+|.++.
T Consensus 204 ~l~~l~~l~~~~~~~lI~DE~~~g~g 229 (396)
T PRK02627 204 YLQALRELCDENGILLILDEVQTGMG 229 (396)
T ss_pred HHHHHHHHHHHcCCEEEEechhcCCC
Confidence 48999999999999999999998764
No 217
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=91.43 E-value=0.15 Score=35.01 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=25.5
Q ss_pred eeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 11 FDPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 11 id~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
-+.+++|+++|+++++++.+|-+|.|+..
T Consensus 195 ~~~l~~l~~l~~~~g~~lI~DEv~~g~g~ 223 (389)
T PRK01278 195 DEFLKGLRQLCDENGLLLIFDEVQCGMGR 223 (389)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 45799999999999999999999987643
No 218
>PLN02955 8-amino-7-oxononanoate synthase
Probab=91.33 E-value=0.25 Score=36.29 Aligned_cols=34 Identities=24% Similarity=0.459 Sum_probs=30.2
Q ss_pred cceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 6 TVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
++.|.+-|+++|.+++++|+..+-+|=|++.+.+
T Consensus 260 SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~ 293 (476)
T PLN02955 260 SMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVC 293 (476)
T ss_pred CCCCCcCCHHHHHHHHHHcCcEEEEcccccCcee
Confidence 5678899999999999999999999999986554
No 219
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=91.30 E-value=0.24 Score=34.43 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=24.0
Q ss_pred eCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 12 DPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 12 d~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
+.+++|.++|+++++++.+|=+|.++.
T Consensus 205 ~~l~~l~~l~~~~g~~lI~DEv~~g~g 231 (403)
T PRK05093 205 EFLQGLRELCDQHNALLIFDEVQTGMG 231 (403)
T ss_pred HHHHHHHHHHHHcCCEEEEechhhCCC
Confidence 349999999999999999999998753
No 220
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=91.22 E-value=0.23 Score=34.45 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=29.3
Q ss_pred cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+ +++|.++|+++++++-+|-+|..+.
T Consensus 182 P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~ 219 (402)
T TIGR03542 182 PNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFI 219 (402)
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhc
Confidence 4678888777 7778888889999999999998754
No 221
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=91.06 E-value=0.28 Score=33.51 Aligned_cols=27 Identities=15% Similarity=0.357 Sum_probs=24.0
Q ss_pred eCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 12 DPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 12 d~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
+.+++|.++|+++++++.+|-+|.|+.
T Consensus 188 ~~l~~l~~l~~~~~~~lI~DEv~~g~g 214 (377)
T PRK02936 188 AFLQEVQTLCKKFGALLIIDEVQTGIG 214 (377)
T ss_pred HHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 349999999999999999999998754
No 222
>PTZ00376 aspartate aminotransferase; Provisional
Probab=90.95 E-value=0.18 Score=35.06 Aligned_cols=36 Identities=22% Similarity=0.188 Sum_probs=28.1
Q ss_pred cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030 4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.+|.||.+=+ +++|.++|+++++++-+|-+|..+..
T Consensus 185 p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~ 223 (404)
T PTZ00376 185 AHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFAS 223 (404)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccC
Confidence 4677887654 56667778899999999999987654
No 223
>PRK12566 glycine dehydrogenase; Provisional
Probab=90.74 E-value=0.39 Score=38.11 Aligned_cols=33 Identities=15% Similarity=-0.049 Sum_probs=27.1
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGG 36 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg 36 (63)
.++..+..+|+++|++++++.|..+++|+|+..
T Consensus 650 Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~ 682 (954)
T PRK12566 650 PSTHGVYEEGIREICEVVHQHGGQVYMDGANLN 682 (954)
T ss_pred cCcCceecchHHHHHHHHHHcCCEEEEEeeChh
Confidence 344445557799999999999999999999963
No 224
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=90.70 E-value=0.29 Score=33.71 Aligned_cols=35 Identities=11% Similarity=0.215 Sum_probs=29.0
Q ss_pred cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+ +++|.++|+++++++-+|-+|..+.
T Consensus 174 p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~ 211 (393)
T TIGR03538 174 PGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELY 211 (393)
T ss_pred CCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcc
Confidence 4788888777 6777788889999999999998654
No 225
>KOG1357|consensus
Probab=90.66 E-value=0.19 Score=37.32 Aligned_cols=34 Identities=24% Similarity=0.474 Sum_probs=30.3
Q ss_pred cceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 6 TVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
++.|.++++.++.++.|+|..++|.|.|..+.+.
T Consensus 287 smEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~ 320 (519)
T KOG1357|consen 287 SMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAM 320 (519)
T ss_pred eccCeecccHHHHHhhccccEEEEeecccccccc
Confidence 4789999999999999999999999999866554
No 226
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=90.61 E-value=0.32 Score=32.67 Aligned_cols=37 Identities=16% Similarity=0.307 Sum_probs=27.5
Q ss_pred cccceeeeeCHHHHHHH---HHHcCcEEEecccccceeee
Q psy14030 4 GTTVLGAFDPIPAIADI---CAEYDMWLHVDAAWGGGALV 40 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i---~~~~~~~~HvDaa~gg~~~~ 40 (63)
.++.||..=+.+++.++ |+++++++-+|-+|+.+..-
T Consensus 157 p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~ 196 (363)
T PF00155_consen 157 PNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFG 196 (363)
T ss_dssp SBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSS
T ss_pred cccccccccccccccchhhhhcccccceeeeeceeccccC
Confidence 36778876665555555 99999999999999987764
No 227
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=90.51 E-value=0.27 Score=33.40 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=30.0
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+.+++.++++ +++++.+|.+|..+.
T Consensus 149 P~NPtG~~~~~~~l~~i~~-~~~~ii~De~y~~~~ 182 (337)
T PRK03967 149 PNNPTGNLQPEEEILKVLE-TGKPVVLDEAYAEFS 182 (337)
T ss_pred CCCCCCCCCCHHHHHHHHh-cCCEEEEECchhhhc
Confidence 5789999999999999995 699999999998753
No 228
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=90.46 E-value=0.22 Score=35.60 Aligned_cols=33 Identities=24% Similarity=0.182 Sum_probs=27.8
Q ss_pred cceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 6 TVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.-.|..-++++|.++|++||+++-.|+||+...
T Consensus 130 hl~G~~~dm~~i~~la~~~~l~vIEDaAqa~Ga 162 (374)
T COG0399 130 HLAGQPCDMDAIMALAKRHGLPVIEDAAQAHGA 162 (374)
T ss_pred hhccCCCCHHHHHHHHHHcCCeEEEEcchhccC
Confidence 345667799999999999999999999987543
No 229
>PRK07049 methionine gamma-lyase; Validated
Probab=90.31 E-value=0.36 Score=34.36 Aligned_cols=36 Identities=8% Similarity=0.094 Sum_probs=31.1
Q ss_pred cccceeeeeCHHHHHHHHHH------cCcEEEecccccceee
Q psy14030 4 GTTVLGAFDPIPAIADICAE------YDMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~------~~~~~HvDaa~gg~~~ 39 (63)
.+|.||.+-|++++.+++++ +++++-+|-+|.++..
T Consensus 183 P~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~ 224 (427)
T PRK07049 183 PANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVF 224 (427)
T ss_pred CCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCcccccc
Confidence 57899999999999999987 7899999999876543
No 230
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=90.23 E-value=0.3 Score=33.06 Aligned_cols=35 Identities=9% Similarity=0.073 Sum_probs=30.8
Q ss_pred cccceeeeeCHHHHHHHHHH--cCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPIPAIADICAE--YDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~--~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+.+++.++++. +++++-+|-+|..+.
T Consensus 160 p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~ 196 (359)
T PRK03158 160 PNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYV 196 (359)
T ss_pred CCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhc
Confidence 47899999999999999987 589999999998755
No 231
>PLN02187 rooty/superroot1
Probab=90.20 E-value=0.35 Score=34.66 Aligned_cols=36 Identities=8% Similarity=0.177 Sum_probs=29.6
Q ss_pred cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030 4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.+|.||.+-+ +++|.++|+++++++-+|-+|+.+..
T Consensus 213 P~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f 251 (462)
T PLN02187 213 PNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIF 251 (462)
T ss_pred CCCCCCCccCHHHHHHHHHHHHHCCCEEEEecccccccc
Confidence 4688998776 77778888899999999999987543
No 232
>KOG2862|consensus
Probab=90.14 E-value=0.23 Score=35.52 Aligned_cols=31 Identities=19% Similarity=0.453 Sum_probs=27.3
Q ss_pred ccccceeeeeC-HHHHHHHHHHcCcEEEeccc
Q psy14030 3 PGTTVLGAFDP-IPAIADICAEYDMWLHVDAA 33 (63)
Q Consensus 3 ~Gtt~tG~id~-i~~i~~i~~~~~~~~HvDaa 33 (63)
=|.+.||+++| ++...++|++|+..+-||++
T Consensus 150 hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~V 181 (385)
T KOG2862|consen 150 HGDSSTGVLQDLLAISGELCHKHEALLLVDTV 181 (385)
T ss_pred ecCccccccchHHHHHHHHhhcCCeEEEEech
Confidence 47899999999 77777899999999999985
No 233
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=90.10 E-value=0.27 Score=35.44 Aligned_cols=26 Identities=46% Similarity=0.649 Sum_probs=20.4
Q ss_pred eeCHHHHHHHHHHcCcEEEecccccc
Q psy14030 11 FDPIPAIADICAEYDMWLHVDAAWGG 36 (63)
Q Consensus 11 id~i~~i~~i~~~~~~~~HvDaa~gg 36 (63)
-|++.+|+++|++|+++.-+..|||.
T Consensus 171 ~D~i~~IakiC~~~~IPhlvNnAYgv 196 (389)
T PF05889_consen 171 PDDIEEIAKICKEYDIPHLVNNAYGV 196 (389)
T ss_dssp ---HHHHHHHHHHHT--EEEEGTTTT
T ss_pred CccHHHHHHHHHHcCCceEEccchhh
Confidence 36699999999999999999999997
No 234
>PLN02397 aspartate transaminase
Probab=90.07 E-value=0.28 Score=34.56 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=28.7
Q ss_pred cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030 4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.+|.||.+-+ +++|.++|+++++++-+|-+|..+..
T Consensus 203 P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~ 241 (423)
T PLN02397 203 AHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFAS 241 (423)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccC
Confidence 4688898755 55567778899999999999988753
No 235
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=90.01 E-value=0.3 Score=34.63 Aligned_cols=36 Identities=25% Similarity=0.424 Sum_probs=31.4
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
-..+.|.+.|-+.++++|++|++++-+.+||...-+
T Consensus 165 ~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grm 200 (382)
T COG1103 165 VDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRM 200 (382)
T ss_pred cCCCcCCchhhHHHHHHHHHcCCceEeecceeeccc
Confidence 356788999999999999999999999999976555
No 236
>KOG1368|consensus
Probab=89.70 E-value=0.17 Score=36.10 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=19.1
Q ss_pred eeCHHHHHHHHHHcCcEEEeccccc
Q psy14030 11 FDPIPAIADICAEYDMWLHVDAAWG 35 (63)
Q Consensus 11 id~i~~i~~i~~~~~~~~HvDaa~g 35 (63)
++.+.+|.++|++.++.+|+|+|--
T Consensus 174 le~~~~v~~lak~~glkLH~DGARi 198 (384)
T KOG1368|consen 174 LEELDRVKALAKRHGLKLHMDGARI 198 (384)
T ss_pred HHHHHHHHHHHhccCCeeecchhhh
Confidence 3345566778899999999999743
No 237
>PRK07908 hypothetical protein; Provisional
Probab=89.51 E-value=0.35 Score=32.71 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=28.8
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~ 37 (63)
.+|.||.+-+.++|.+++++ +.++.+|.+|.-+
T Consensus 148 p~NPTG~~~~~~~l~~l~~~-~~~iIvDe~y~~~ 180 (349)
T PRK07908 148 PTNPTSVLHPAEQLLALRRP-GRILVVDEAFADA 180 (349)
T ss_pred CCCCCCCCcCHHHHHHHHhc-CCEEEEECcchhh
Confidence 57899999999999999965 7788999999865
No 238
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=89.45 E-value=0.41 Score=32.62 Aligned_cols=35 Identities=17% Similarity=0.114 Sum_probs=31.7
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
-+|.||.+-+.+++.++++.+++++-+|-+|+.+.
T Consensus 169 p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~ 203 (368)
T PRK03317 169 PNNPTGTALPLDDVEAILDAAPGIVVVDEAYAEFR 203 (368)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCceEEEeCCchhhc
Confidence 36889999999999999999999999999998764
No 239
>PRK08068 transaminase; Reviewed
Probab=89.24 E-value=0.41 Score=32.93 Aligned_cols=34 Identities=15% Similarity=0.127 Sum_probs=27.5
Q ss_pred cccceeeeeCHH---HHHHHHHHcCcEEEecccccce
Q psy14030 4 GTTVLGAFDPIP---AIADICAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 4 Gtt~tG~id~i~---~i~~i~~~~~~~~HvDaa~gg~ 37 (63)
.+|.||.+-+.+ +|.++|+++++++-+|-+|+.+
T Consensus 176 P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~ 212 (389)
T PRK08068 176 PNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAI 212 (389)
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhh
Confidence 468899988875 5556778999999999999764
No 240
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=88.64 E-value=0.53 Score=31.88 Aligned_cols=35 Identities=17% Similarity=0.033 Sum_probs=30.3
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+.+++.++++..+.++.+|.+|..+.
T Consensus 162 p~NPtG~~~~~~~~~~i~~~~~~~ii~De~y~~~~ 196 (356)
T PRK04870 162 PNNPTGNLFDDADVERIIEAAPGLVVVDEAYQPFA 196 (356)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCEEEEECCchhhc
Confidence 47899999999999999887788999999997653
No 241
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=88.59 E-value=0.51 Score=32.66 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=26.6
Q ss_pred cccceeeeeC---HHHHHHHHHHcCcEEEecccccc
Q psy14030 4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGG 36 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg 36 (63)
.+|.||.+-+ +++|.++|+++++++-+|-+|+-
T Consensus 188 P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~ 223 (416)
T PRK09440 188 PTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGP 223 (416)
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccc
Confidence 3578888766 56667778899999999999974
No 242
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=88.49 E-value=0.55 Score=32.76 Aligned_cols=30 Identities=23% Similarity=0.442 Sum_probs=26.6
Q ss_pred eeeeeC----HHHHHHHHHHcCcEEEecccccce
Q psy14030 8 LGAFDP----IPAIADICAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 8 tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~ 37 (63)
+|.+-+ +++|.++|+++++++-+|=+|.|+
T Consensus 208 ~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~ 241 (423)
T TIGR00713 208 MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGF 241 (423)
T ss_pred CCCcCCCHHHHHHHHHHHHHhCCEEEEEcccccc
Confidence 576666 789999999999999999999877
No 243
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=88.46 E-value=0.52 Score=33.29 Aligned_cols=31 Identities=23% Similarity=0.454 Sum_probs=27.4
Q ss_pred ceeeeeC----HHHHHHHHHHcCcEEEecccccce
Q psy14030 7 VLGAFDP----IPAIADICAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 7 ~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~ 37 (63)
+.|.+-| +++|.++|++|++.+-+|=+|.|+
T Consensus 209 ~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~ 243 (426)
T PRK00062 209 NMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF 243 (426)
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhcc
Confidence 4577777 999999999999999999999876
No 244
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=88.28 E-value=0.62 Score=33.58 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=32.4
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.+|.+.-+.||.+|+++++++|+.+-||-+|+..++
T Consensus 158 PsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~~ 193 (396)
T COG0626 158 PSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVL 193 (396)
T ss_pred CCCcccccccHHHHHHHHHhcCCEEEEECCcccccc
Confidence 466888899999999999999999999999998665
No 245
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=87.91 E-value=1.1 Score=32.83 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=29.0
Q ss_pred ceeeeeC----HHHHHHHHHHcCcEEEecccccceeee
Q psy14030 7 VLGAFDP----IPAIADICAEYDMWLHVDAAWGGGALV 40 (63)
Q Consensus 7 ~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~~~ 40 (63)
+-|.+-| +++|+++|++||+.+-+|=++.||...
T Consensus 272 ~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRt 309 (504)
T PLN02760 272 AGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRL 309 (504)
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCccc
Confidence 3467777 999999999999999999999877553
No 246
>PRK06836 aspartate aminotransferase; Provisional
Probab=87.87 E-value=0.64 Score=32.14 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=27.4
Q ss_pred cccceeeeeC---HHHHHHHHHH------cCcEEEeccccccee
Q psy14030 4 GTTVLGAFDP---IPAIADICAE------YDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~------~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-| +++|+++|++ +++++-+|-+|..+.
T Consensus 177 p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~ 220 (394)
T PRK06836 177 PNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIV 220 (394)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccc
Confidence 4788999877 5555556777 799999999998753
No 247
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=87.61 E-value=0.64 Score=31.61 Aligned_cols=34 Identities=18% Similarity=0.003 Sum_probs=30.3
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~ 37 (63)
.+|.||.+-+.+++.+++++.+.++-+|-+|+.+
T Consensus 157 p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~~ 190 (351)
T PRK14807 157 PNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFEF 190 (351)
T ss_pred CCCCCCCCCCHHHHHHHHHhCCCEEEEeCcchhh
Confidence 5788999999999999999888888899999765
No 248
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=87.39 E-value=0.73 Score=31.14 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=27.4
Q ss_pred cccceeeeeCH---HHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPI---PAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i---~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+. ++|.++|+++++++-+|-+|.-+.
T Consensus 131 P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~ 168 (332)
T PRK06425 131 PDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFV 168 (332)
T ss_pred CCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccc
Confidence 57889987775 555556678899999999998765
No 249
>PRK06107 aspartate aminotransferase; Provisional
Probab=87.32 E-value=0.43 Score=33.08 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=27.0
Q ss_pred cccceeeeeC---HHHHHHHHHHc-CcEEEecccccce
Q psy14030 4 GTTVLGAFDP---IPAIADICAEY-DMWLHVDAAWGGG 37 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~-~~~~HvDaa~gg~ 37 (63)
.+|.||.+-+ +++|+++|+++ ++++.+|-+|+.+
T Consensus 175 p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l 212 (402)
T PRK06107 175 PSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHI 212 (402)
T ss_pred CCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhcccc
Confidence 4788997765 56667778887 9999999999854
No 250
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=87.11 E-value=0.74 Score=33.55 Aligned_cols=34 Identities=26% Similarity=0.115 Sum_probs=29.4
Q ss_pred ceeeeeCHHHHHHHHHHcCcEEEecccccceeee
Q psy14030 7 VLGAFDPIPAIADICAEYDMWLHVDAAWGGGALV 40 (63)
Q Consensus 7 ~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~ 40 (63)
.-+.+-|++.|+++|++.++.+-||-+++..+++
T Consensus 159 P~~~v~Die~ia~iAh~~gvpliVDNT~atpyl~ 192 (426)
T COG2873 159 PGLDVLDIEAIAEIAHRHGVPLIVDNTFATPYLC 192 (426)
T ss_pred CCccccCHHHHHHHHHHcCCcEEEecCCCcceec
Confidence 3466889999999999999999999999987543
No 251
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=86.97 E-value=0.6 Score=32.31 Aligned_cols=35 Identities=11% Similarity=-0.013 Sum_probs=30.2
Q ss_pred ccccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
-.+|.||.+-+.+++.++++.. +++.+|-+|..+.
T Consensus 183 ~P~NPTG~~~~~~~l~~l~~~~-~~vi~DeaY~~~~ 217 (380)
T PLN03026 183 SPNNPDGSIISDDDLLKILELP-ILVVLDEAYIEFS 217 (380)
T ss_pred CCCCCCCCCCCHHHHHHHHhcC-CEEEEECcchhhc
Confidence 3579999999999999999864 8999999997653
No 252
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=86.73 E-value=0.76 Score=32.84 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=28.3
Q ss_pred ceeeeeC----HHHHHHHHHHcCcEEEecccccceee
Q psy14030 7 VLGAFDP----IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 7 ~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
+.|.+-| +++|.++|+++++.+.+|=++.|+..
T Consensus 233 ~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr 269 (441)
T PRK05769 233 EGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGR 269 (441)
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCc
Confidence 3467778 99999999999999999999988543
No 253
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=86.71 E-value=0.8 Score=32.24 Aligned_cols=33 Identities=30% Similarity=0.366 Sum_probs=27.5
Q ss_pred ceeeeeC----HHHHHHHHHHcCcEEEecccccceee
Q psy14030 7 VLGAFDP----IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 7 ~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
++|.+-+ +++|+++|+++++++-.|=+|.|+..
T Consensus 209 ~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr 245 (420)
T TIGR00700 209 EGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFAR 245 (420)
T ss_pred CCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcc
Confidence 3455555 89999999999999999999988754
No 254
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=86.36 E-value=0.86 Score=31.08 Aligned_cols=35 Identities=9% Similarity=-0.048 Sum_probs=29.1
Q ss_pred cccceeeeeCHHHHHHHHHHc--CcEEEeccccccee
Q psy14030 4 GTTVLGAFDPIPAIADICAEY--DMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~--~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+.+++.++++.. +.++.+|-+|.-|.
T Consensus 154 PnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~ 190 (351)
T PRK01688 154 PNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFC 190 (351)
T ss_pred CCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcC
Confidence 578999999999988888743 57899999997664
No 255
>KOG1360|consensus
Probab=86.06 E-value=0.68 Score=34.38 Aligned_cols=34 Identities=21% Similarity=0.387 Sum_probs=29.1
Q ss_pred cceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 6 TVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
++.|++=|++||+++++|||...-+|-+.+-..+
T Consensus 314 SM~GavcpleelcDvah~yGAiTFlDEVHAVGlY 347 (570)
T KOG1360|consen 314 SMDGAVCPLEELCDVAHKYGAITFLDEVHAVGLY 347 (570)
T ss_pred ccCCCcCCHHHHHHHHHHhCceeeeehhhhhccc
Confidence 5789999999999999999999999987665443
No 256
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=85.59 E-value=0.92 Score=32.49 Aligned_cols=32 Identities=22% Similarity=0.417 Sum_probs=28.0
Q ss_pred ceeeeeC----HHHHHHHHHHcCcEEEeccccccee
Q psy14030 7 VLGAFDP----IPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 7 ~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
+.|.+-| +++|.++|+++++.+-+|=++.|+.
T Consensus 230 ~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~G 265 (445)
T PRK09221 230 SAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFG 265 (445)
T ss_pred CCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCC
Confidence 4577778 9999999999999999999997764
No 257
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=85.47 E-value=0.96 Score=31.06 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=29.9
Q ss_pred cccceeeeeCHHHHHHHHHH--cCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPIPAIADICAE--YDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~--~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+.+++.++++. ++.++.+|-+|..|.
T Consensus 161 p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~ 197 (364)
T PRK04781 161 PSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFS 197 (364)
T ss_pred CCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhc
Confidence 57899999999999998875 378999999998764
No 258
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=85.09 E-value=1.1 Score=31.72 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=27.4
Q ss_pred eeeeeC----HHHHHHHHHHcCcEEEecccccceee
Q psy14030 8 LGAFDP----IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 8 tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
-|.+-| +++|.++|++|++.+-+|=+|.|+..
T Consensus 220 ~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr 255 (433)
T PRK08117 220 GGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGR 255 (433)
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCc
Confidence 466667 99999999999999999999998533
No 259
>PRK06855 aminotransferase; Validated
Probab=84.97 E-value=1.1 Score=31.57 Aligned_cols=36 Identities=28% Similarity=0.435 Sum_probs=28.0
Q ss_pred cccceeeeeCH---HHHHHHHHHcCcEEEecccccceee
Q psy14030 4 GTTVLGAFDPI---PAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~id~i---~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.+|.||.+-+. ++|.++|+++++|+-+|-+|+.+..
T Consensus 180 P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~ 218 (433)
T PRK06855 180 PDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVY 218 (433)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccccc
Confidence 46788887775 5556667899999999999987653
No 260
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=84.89 E-value=0.93 Score=29.73 Aligned_cols=29 Identities=10% Similarity=-0.017 Sum_probs=25.1
Q ss_pred CccccceeeeeCHHHHHHHHHHcCcEEEe
Q psy14030 2 FPGTTVLGAFDPIPAIADICAEYDMWLHV 30 (63)
Q Consensus 2 t~Gtt~tG~id~i~~i~~i~~~~~~~~Hv 30 (63)
|=|++..|.++|.+..+++++++|+.+|.
T Consensus 119 TDG~n~~~~i~P~~aAa~lA~~~gV~iyt 147 (191)
T cd01455 119 SDANLERYGIQPKKLADALAREPNVNAFV 147 (191)
T ss_pred eCCCcCCCCCChHHHHHHHHHhCCCEEEE
Confidence 34888899999999889999999999884
No 261
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=84.87 E-value=1 Score=31.51 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=30.2
Q ss_pred cccceeeeeCHH---HHHHHHHHc-CcEEEeccccccee
Q psy14030 4 GTTVLGAFDPIP---AIADICAEY-DMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i~---~i~~i~~~~-~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+.+ +|.++|+++ ++|+-+|-+|+-+.
T Consensus 221 p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~ 259 (431)
T PRK15481 221 AHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLS 259 (431)
T ss_pred CCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhc
Confidence 578899998876 888889999 99999999998764
No 262
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=84.67 E-value=0.96 Score=31.17 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=27.6
Q ss_pred cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+=+ +++|.++|+++++|+-+|=+|+.+.
T Consensus 175 P~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~ 212 (396)
T PRK09147 175 PGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIY 212 (396)
T ss_pred CCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccc
Confidence 4677887664 6666677789999999999998764
No 263
>PRK06541 hypothetical protein; Provisional
Probab=84.63 E-value=2.2 Score=30.79 Aligned_cols=34 Identities=26% Similarity=0.461 Sum_probs=29.0
Q ss_pred cceeeeeC----HHHHHHHHHHcCcEEEecccccceee
Q psy14030 6 TVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 6 t~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
++.|.+-+ +++|.++|+++|+.+-+|=++.||..
T Consensus 232 g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR 269 (460)
T PRK06541 232 NAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGR 269 (460)
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCc
Confidence 45577778 99999999999999999999977643
No 264
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=84.44 E-value=1 Score=30.85 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=29.4
Q ss_pred cccceeeeeCHHHHHHHHHH--cCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPIPAIADICAE--YDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~--~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+.+++.++++. .+.++.+|.+|..+.
T Consensus 168 p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~ 204 (371)
T PRK05166 168 PSNPVGSWLTADQLARVLDATPPETLIVVDEAYAEYA 204 (371)
T ss_pred CCCCCCCCCCHHHHHHHHHhCCCCcEEEEECcHHHhc
Confidence 47889999999888888874 478999999998765
No 265
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=84.21 E-value=1.1 Score=30.42 Aligned_cols=35 Identities=17% Similarity=0.060 Sum_probs=30.3
Q ss_pred cccceeeeeCHHHHHHHHHHc-CcEEEeccccccee
Q psy14030 4 GTTVLGAFDPIPAIADICAEY-DMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~-~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+.+++.++++.. ++++-+|-+|.-+.
T Consensus 156 P~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~ 191 (354)
T PRK04635 156 PNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFC 191 (354)
T ss_pred CCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhc
Confidence 578999999999999999863 69999999997654
No 266
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=84.14 E-value=0.72 Score=33.15 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=28.9
Q ss_pred cccceeee---eCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 4 GTTVLGAF---DPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~i---d~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.||.||.+ +.+.++.++++++|+++-+|-|||-.+.
T Consensus 188 PtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP 226 (417)
T COG3977 188 PTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFP 226 (417)
T ss_pred CCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCC
Confidence 46677765 4577778899999999999999997664
No 267
>PRK08636 aspartate aminotransferase; Provisional
Probab=83.86 E-value=1.3 Score=30.72 Aligned_cols=35 Identities=9% Similarity=0.041 Sum_probs=27.7
Q ss_pred cccceeeeeCH---HHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPI---PAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i---~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+=+. ++|.++|+++++++-+|=+|+.+.
T Consensus 184 P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~ 221 (403)
T PRK08636 184 PHNPTTATVEKSFYERLVALAKKERFYIISDIAYADIT 221 (403)
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhc
Confidence 46788887665 566667789999999999998764
No 268
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=83.83 E-value=1.3 Score=30.80 Aligned_cols=35 Identities=20% Similarity=0.100 Sum_probs=27.0
Q ss_pred cccceeeeeCH---HHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPI---PAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i---~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+. ++|.++|+++++++-+|-+|+.+.
T Consensus 185 P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~ 222 (409)
T PRK07590 185 PNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFI 222 (409)
T ss_pred CCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhc
Confidence 36788887664 556666788999999999998754
No 269
>PRK05367 glycine dehydrogenase; Provisional
Probab=83.48 E-value=1.5 Score=34.73 Aligned_cols=29 Identities=14% Similarity=0.086 Sum_probs=26.6
Q ss_pred cceeeeeCHHHHHHHHHHcCcEEEecccc
Q psy14030 6 TVLGAFDPIPAIADICAEYDMWLHVDAAW 34 (63)
Q Consensus 6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~ 34 (63)
+.+|.+.|+++|++++++.|+.+-||+.+
T Consensus 216 ~~~G~i~d~~~i~~~ah~~Gal~~vda~~ 244 (954)
T PRK05367 216 GTSGEVRDYTALIAAAHARGALVAVAADL 244 (954)
T ss_pred CCCeeeccHHHHHHHHHHcCCEEEEEehh
Confidence 57899999999999999999999999944
No 270
>PRK05839 hypothetical protein; Provisional
Probab=83.47 E-value=1.4 Score=30.34 Aligned_cols=35 Identities=11% Similarity=0.030 Sum_probs=26.6
Q ss_pred cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+=+ +++|.++|+++++++-+|-+|+.+.
T Consensus 164 P~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~ 201 (374)
T PRK05839 164 PNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIY 201 (374)
T ss_pred CCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcc
Confidence 3677888655 4555566778999999999998753
No 271
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=83.44 E-value=1.4 Score=31.26 Aligned_cols=31 Identities=16% Similarity=0.265 Sum_probs=27.7
Q ss_pred ceeeeeC----HHHHHHHHHHcCcEEEecccccce
Q psy14030 7 VLGAFDP----IPAIADICAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 7 ~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~ 37 (63)
+.|.+-| +++|.++|+++++.+-+|=++.||
T Consensus 212 ~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~ 246 (428)
T PRK12389 212 NFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF 246 (428)
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc
Confidence 4466777 999999999999999999999987
No 272
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=83.16 E-value=1.8 Score=30.30 Aligned_cols=28 Identities=14% Similarity=0.243 Sum_probs=25.0
Q ss_pred eeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 11 FDPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 11 id~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+.+++|+++|++|++++-+|=+|.|+.
T Consensus 203 ~~~l~~l~~l~~~~~~llI~DEv~tG~g 230 (406)
T PRK12381 203 KAFLQGLRELCDRHNALLIFDEVQTGVG 230 (406)
T ss_pred HHHHHHHHHHHHHcCCEEEEcchhhCCC
Confidence 4679999999999999999999997764
No 273
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=82.77 E-value=1.7 Score=31.18 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=28.8
Q ss_pred cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030 4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.+|.||.+-+ +++|.++|+++++++-+|-+|+.+..
T Consensus 209 P~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f 247 (447)
T PLN02607 209 PSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVF 247 (447)
T ss_pred CCCCcCcccCHHHHHHHHHHHHHCCCEEEEecccccccc
Confidence 4678888766 66777788899999999999987543
No 274
>PRK09105 putative aminotransferase; Provisional
Probab=82.73 E-value=1.3 Score=30.51 Aligned_cols=34 Identities=24% Similarity=0.117 Sum_probs=28.9
Q ss_pred cccceeeeeCHHHHHHHHHH--cCcEEEecccccce
Q psy14030 4 GTTVLGAFDPIPAIADICAE--YDMWLHVDAAWGGG 37 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~--~~~~~HvDaa~gg~ 37 (63)
.+|.||.+-+.+++.++++. ++.|+-+|-+|..+
T Consensus 174 P~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~~f 209 (370)
T PRK09105 174 PNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYIHF 209 (370)
T ss_pred CCCCCCcCcCHHHHHHHHHhCCCCcEEEEECchHHh
Confidence 57999999999999998864 38999999999654
No 275
>PRK12403 putative aminotransferase; Provisional
Probab=82.32 E-value=1.7 Score=31.33 Aligned_cols=32 Identities=38% Similarity=0.594 Sum_probs=27.8
Q ss_pred eeeeeC----HHHHHHHHHHcCcEEEecccccceee
Q psy14030 8 LGAFDP----IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 8 tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
-|.+-| +++|.++|++|++.+-+|=+++||..
T Consensus 235 gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGR 270 (460)
T PRK12403 235 GGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGR 270 (460)
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 366667 99999999999999999999988754
No 276
>KOG0630|consensus
Probab=81.32 E-value=0.96 Score=34.54 Aligned_cols=31 Identities=35% Similarity=0.619 Sum_probs=27.9
Q ss_pred CccccceeeeeCHHHHHHHHHHcC-cEEEecc
Q psy14030 2 FPGTTVLGAFDPIPAIADICAEYD-MWLHVDA 32 (63)
Q Consensus 2 t~Gtt~tG~id~i~~i~~i~~~~~-~~~HvDa 32 (63)
..|++-.|-.|.+-+|.++|+++. +|+|.-+
T Consensus 299 ~iGasi~GqnDmi~kildi~eahakfWLHasG 330 (838)
T KOG0630|consen 299 DIGASICGQNDMILKILDICEAHAKFWLHASG 330 (838)
T ss_pred eccchhhcchHHHHHHHHHHHHhhheeEeecc
Confidence 478999999999999999999886 9999765
No 277
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=81.29 E-value=3.3 Score=29.51 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHcCcEEEecccccceee
Q psy14030 13 PIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 13 ~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
=+++|+++|+++|+++-.|=+|.||..
T Consensus 228 yl~~lr~lc~~~g~llI~DEV~tGfGR 254 (442)
T TIGR00709 228 WLQKIREVTRKHDIKLILDEVQAGFGR 254 (442)
T ss_pred HHHHHHHHHHHcCCEEEEeccccCCCC
Confidence 388999999999999999999998765
No 278
>PLN02368 alanine transaminase
Probab=81.18 E-value=2 Score=30.45 Aligned_cols=36 Identities=14% Similarity=0.114 Sum_probs=27.6
Q ss_pred cccceeeeeCHH---HHHHHHHHcCcEEEecccccceee
Q psy14030 4 GTTVLGAFDPIP---AIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~id~i~---~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.+|.||.+-+.+ +|.++|+++++++-+|-+|..+.+
T Consensus 219 P~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y 257 (407)
T PLN02368 219 PGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIY 257 (407)
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcccccccc
Confidence 467888876655 455567889999999999987654
No 279
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=81.13 E-value=1.9 Score=30.90 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=26.9
Q ss_pred eeeeeC----HHHHHHHHHHcCcEEEecccccceee
Q psy14030 8 LGAFDP----IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 8 tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.|.+-| +++|+++|+++++.+.+|=++.|+..
T Consensus 220 gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~Gr 255 (445)
T PRK08593 220 GGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGR 255 (445)
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCc
Confidence 355556 99999999999999999999977643
No 280
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=81.08 E-value=2 Score=30.27 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHcCcEEEeccccccee
Q psy14030 13 PIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 13 ~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+++|.++|+++++.+-+|-++.|+.
T Consensus 222 ~l~~l~~lc~~~g~llI~DEv~tg~g 247 (423)
T PRK05964 222 YLAELRRICDRHGVLLIFDEIATGFG 247 (423)
T ss_pred HHHHHHHHHHHcCCEEEEechhhCCC
Confidence 39999999999999999999998764
No 281
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=81.03 E-value=2 Score=30.79 Aligned_cols=34 Identities=24% Similarity=0.229 Sum_probs=28.1
Q ss_pred cceeeeeC----HHHHHHHHHHcCcEEEecccccceee
Q psy14030 6 TVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 6 t~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
+++|.+-+ +++|.++|+++++++-+|=+|.|+..
T Consensus 215 ~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr 252 (443)
T PRK08360 215 GDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGR 252 (443)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 45666555 88999999999999999999988644
No 282
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=80.79 E-value=1.3 Score=31.32 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=24.4
Q ss_pred eCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 12 DPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 12 d~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
+.+++|.++|++||+.+-+|-+|.|+.
T Consensus 219 ~~l~~l~~lc~~~g~llI~DEV~tG~G 245 (425)
T PRK09264 219 EWLQRLAKLCRKHDILLIVDDIQAGCG 245 (425)
T ss_pred HHHHHHHHHHHHcCcEEEEechhhCCc
Confidence 469999999999999999999998764
No 283
>KOG0257|consensus
Probab=80.38 E-value=1.9 Score=31.54 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=28.8
Q ss_pred cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030 4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.+|.||.+=+ +++|+++|+++++++-.|-+|--++.
T Consensus 181 PhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~ 219 (420)
T KOG0257|consen 181 PHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVY 219 (420)
T ss_pred CCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhh
Confidence 4677777655 77888899999999999999875544
No 284
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=80.34 E-value=2.1 Score=31.20 Aligned_cols=57 Identities=18% Similarity=0.198 Sum_probs=38.9
Q ss_pred ccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030 3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP 62 (63)
Q Consensus 3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h 62 (63)
+|.+..--.-|+++++++|++-|.++-+|.|+-........++ .-++.+|=+|.+.|
T Consensus 172 ~G~SaY~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p---~P~~~AdvVTtTTH 228 (413)
T COG0112 172 AGGSAYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHP---NPLPHADVVTTTTH 228 (413)
T ss_pred ECccccccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCC---CCCCccceEeCCcc
Confidence 3444444566899999999999999999999854444333333 23555676666665
No 285
>PRK06062 hypothetical protein; Provisional
Probab=80.11 E-value=3.8 Score=29.43 Aligned_cols=32 Identities=19% Similarity=0.399 Sum_probs=27.9
Q ss_pred eeeeeC----HHHHHHHHHHcCcEEEecccccceee
Q psy14030 8 LGAFDP----IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 8 tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
-|.+-| +++|.++|+++|+.+-+|=++.||..
T Consensus 227 gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGR 262 (451)
T PRK06062 227 AGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGR 262 (451)
T ss_pred CCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCc
Confidence 366677 99999999999999999999998654
No 286
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=79.60 E-value=2.6 Score=30.69 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=27.9
Q ss_pred cccceeeeeCHH---HHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPIP---AIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i~---~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+.+ +|.++|+++++++-+|-+|+.+.
T Consensus 208 P~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~ 245 (496)
T PLN02376 208 PSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATV 245 (496)
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccc
Confidence 467888887754 56667778999999999999764
No 287
>PLN02231 alanine transaminase
Probab=79.17 E-value=1.9 Score=31.80 Aligned_cols=35 Identities=14% Similarity=0.219 Sum_probs=27.9
Q ss_pred ccceeeee---CHHHHHHHHHHcCcEEEecccccceee
Q psy14030 5 TTVLGAFD---PIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 5 tt~tG~id---~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
+|.||.+- .+++|.++|+++++++-+|-+|.-+.+
T Consensus 281 ~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y 318 (534)
T PLN02231 281 GNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVY 318 (534)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhccc
Confidence 57788765 466777788899999999999987654
No 288
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=78.59 E-value=1.4 Score=28.36 Aligned_cols=31 Identities=10% Similarity=0.196 Sum_probs=26.9
Q ss_pred ccceeeeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030 5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWG 35 (63)
Q Consensus 5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~g 35 (63)
+...|+.++++++++.|+++|+.|-+|.+.-
T Consensus 45 d~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~N 75 (316)
T PF00128_consen 45 DPRFGTMEDFKELVDAAHKRGIKVILDVVPN 75 (316)
T ss_dssp STTTBHHHHHHHHHHHHHHTTCEEEEEEETS
T ss_pred ccccchhhhhhhhhhccccccceEEEeeecc
Confidence 4566888999999999999999999998754
No 289
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=78.33 E-value=1.7 Score=29.97 Aligned_cols=35 Identities=20% Similarity=0.151 Sum_probs=27.3
Q ss_pred cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+=+ +++|.++|+++++++-+|-+|..+.
T Consensus 181 p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~ 218 (396)
T PRK09257 181 CHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFG 218 (396)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccc
Confidence 3577777655 5666777889999999999998764
No 290
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=78.23 E-value=2.5 Score=30.24 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=27.8
Q ss_pred ceeeeeC----HHHHHHHHHHcCcEEEecccccceee
Q psy14030 7 VLGAFDP----IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 7 ~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
+-|.+-| +++|+++|+++++.+-+|=++.|+..
T Consensus 227 ~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~Gr 263 (442)
T PRK13360 227 STGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGR 263 (442)
T ss_pred CCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCC
Confidence 3466777 99999999999999999999977643
No 291
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=78.20 E-value=2.7 Score=28.86 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=27.8
Q ss_pred cccceeeeeCHH---HHHHHHHHcCcEEEecccccceee
Q psy14030 4 GTTVLGAFDPIP---AIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~id~i~---~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.+|.||.+-+.+ +|.++|+++++|+-+|-+|.-+..
T Consensus 174 p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~ 212 (388)
T PRK07366 174 PHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVF 212 (388)
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhccc
Confidence 468888876654 555577899999999999987653
No 292
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=77.21 E-value=1.3 Score=30.79 Aligned_cols=31 Identities=19% Similarity=0.017 Sum_probs=24.6
Q ss_pred ccccceeeee-CHHHHHHHHHHcCcEEEecccccceee
Q psy14030 3 PGTTVLGAFD-PIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 3 ~Gtt~tG~id-~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
--.|.||++. |+.+| +++.+-||+++.....
T Consensus 149 h~eTstGv~~~~i~~i------~g~l~vVDavss~g~~ 180 (360)
T PRK05355 149 SNETIDGTEFHELPDT------GDVPLVADMSSDILSR 180 (360)
T ss_pred cCCCcceEecCccccc------CCCcEEEEcCccccCc
Confidence 3468999997 77776 8999999999865544
No 293
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=76.82 E-value=2.7 Score=29.66 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=24.3
Q ss_pred eCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 12 DPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 12 d~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
+-+++|.++|+++++.+-.|-+|.|+..
T Consensus 215 ~~l~~l~~lc~~~g~llI~DEV~tG~GR 242 (412)
T TIGR02407 215 EWLQRLEKLCRRHDILLIVDDIQAGCGR 242 (412)
T ss_pred HHHHHHHHHHHHcCCEEEEechhhCCCc
Confidence 3488999999999999999999987643
No 294
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=76.32 E-value=3.3 Score=29.86 Aligned_cols=32 Identities=28% Similarity=0.514 Sum_probs=27.3
Q ss_pred eeeeeC----HHHHHHHHHHcCcEEEecccccceee
Q psy14030 8 LGAFDP----IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 8 tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
-|.+-| ++++.++|+++++.+-+|=+|.|+..
T Consensus 237 gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GR 272 (442)
T TIGR03372 237 GGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGR 272 (442)
T ss_pred CCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCc
Confidence 466667 99999999999999999999987643
No 295
>PLN00144 acetylornithine transaminase
Probab=76.08 E-value=2.8 Score=29.21 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=23.9
Q ss_pred HHHHHHHHHHcCcEEEecccccceee
Q psy14030 14 IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 14 i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
+++|.++|+++++++-.|=++.|+..
T Consensus 190 ~~~l~~l~~~~g~llI~DEv~tg~gr 215 (382)
T PLN00144 190 LQGLRALCDEAGALLVFDEVQCGLGR 215 (382)
T ss_pred HHHHHHHHHHcCCEEEEechhhCCCc
Confidence 89999999999999999999988754
No 296
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=75.87 E-value=3 Score=29.62 Aligned_cols=28 Identities=29% Similarity=0.408 Sum_probs=24.9
Q ss_pred eCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 12 DPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 12 d~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
+-+++|.++|+++|+.+-+|-+|.|+..
T Consensus 239 ~~l~~l~~lc~~~g~llI~DEV~tG~Gr 266 (431)
T TIGR03251 239 EFLRAMRALCDEHDALLIFDEVQTGVGL 266 (431)
T ss_pred HHHHHHHHHHHHcCCEEEEecchhccCc
Confidence 4689999999999999999999998644
No 297
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=75.78 E-value=3.5 Score=29.81 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=27.7
Q ss_pred ceeeeeC----HHHHHHHHHHcCcEEEecccccceee
Q psy14030 7 VLGAFDP----IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 7 ~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
+-|.+-| ++++.++|+++|+.+-+|=+|.|+..
T Consensus 243 ~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GR 279 (459)
T PRK11522 243 EGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGR 279 (459)
T ss_pred CCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCc
Confidence 3466667 99999999999999999999987643
No 298
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=75.52 E-value=3.1 Score=29.17 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=22.9
Q ss_pred HHHHHHHHHHcCcEEEecccccce
Q psy14030 14 IPAIADICAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 14 i~~i~~i~~~~~~~~HvDaa~gg~ 37 (63)
++++.++|+++++.+-.|-++.|+
T Consensus 185 l~~lr~lc~~~gillI~DEv~tG~ 208 (364)
T PRK04013 185 VKTLRDLTEDVGALLIADEVQSGL 208 (364)
T ss_pred HHHHHHHHHHcCCEEEEechhhcC
Confidence 899999999999999999999986
No 299
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=75.39 E-value=6.9 Score=28.55 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=27.6
Q ss_pred eeeeeC----HHHHHHHHHHcCcEEEecccccceee
Q psy14030 8 LGAFDP----IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 8 tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.|.+-| +++|+++|+++|+.+-+|=++.|+..
T Consensus 264 ~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGr 299 (464)
T TIGR00699 264 GGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGA 299 (464)
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCC
Confidence 366666 99999999999999999999988754
No 300
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=75.24 E-value=3.6 Score=28.22 Aligned_cols=36 Identities=19% Similarity=0.311 Sum_probs=29.8
Q ss_pred ccccceeeeeCHHHHHHHHHHc--CcEEEeccccccee
Q psy14030 3 PGTTVLGAFDPIPAIADICAEY--DMWLHVDAAWGGGA 38 (63)
Q Consensus 3 ~Gtt~tG~id~i~~i~~i~~~~--~~~~HvDaa~gg~~ 38 (63)
-.+|.||.+-+.+++.++++.. ++++-+|-+|+.+.
T Consensus 163 ~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~~ 200 (369)
T PRK08153 163 NPDNPMGSWHPAADIVAFIEALPETTLLVLDEAYCETA 200 (369)
T ss_pred CCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhhc
Confidence 3578899999999999888754 88999999998654
No 301
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=75.12 E-value=3.2 Score=28.19 Aligned_cols=33 Identities=15% Similarity=0.071 Sum_probs=29.4
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~ 37 (63)
.+|.||.+=+.+++.+++ ++++++-+|-+|.-+
T Consensus 147 P~NPTG~~~s~~~l~~l~-~~~~~ii~DE~Y~~f 179 (335)
T PRK14808 147 PNNPTGHVFEREEIERIL-KTGAFVALDEAYYEF 179 (335)
T ss_pred CCCCCCCCcCHHHHHHHH-hcCCEEEEECchhhh
Confidence 578999999999999998 579999999999865
No 302
>PRK06105 aminotransferase; Provisional
Probab=75.09 E-value=6.8 Score=28.23 Aligned_cols=32 Identities=25% Similarity=0.294 Sum_probs=27.2
Q ss_pred eeeeeC----HHHHHHHHHHcCcEEEecccccceee
Q psy14030 8 LGAFDP----IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 8 tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
-|.+-+ +++++++|+++++.+-+|=++.|+..
T Consensus 231 gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GR 266 (460)
T PRK06105 231 GGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGR 266 (460)
T ss_pred CCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCc
Confidence 355556 99999999999999999999987755
No 303
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=74.48 E-value=3.6 Score=30.54 Aligned_cols=35 Identities=23% Similarity=0.237 Sum_probs=28.0
Q ss_pred cccceeeeeC---HHHHHHHHHHc--CcEEEeccccccee
Q psy14030 4 GTTVLGAFDP---IPAIADICAEY--DMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~~--~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+ +++|+++|+++ +++|-+|=+|+.+.
T Consensus 249 P~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~ 288 (521)
T TIGR03801 249 PSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFV 288 (521)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhc
Confidence 5788898877 66667778876 89999999998754
No 304
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=73.69 E-value=3.9 Score=28.96 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=23.4
Q ss_pred HHHHHHHHHHcCcEEEecccccceee
Q psy14030 14 IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 14 i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
+++|.++|+++++++-+|=+|.|+..
T Consensus 210 l~~l~~l~~~~g~llI~DEv~tg~gr 235 (408)
T PRK04612 210 LARVRALCDQHDALLVLDEIQCGMGR 235 (408)
T ss_pred HHHHHHHHHHcCCEEEEeccccCCCc
Confidence 89999999999999999999987543
No 305
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=73.21 E-value=3.8 Score=28.98 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCcEEEecccccceee
Q psy14030 14 IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 14 i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
+++|.++|+++++++-+|=+|.|+..
T Consensus 221 l~~l~~lc~~~g~llI~DEv~tg~gr 246 (421)
T PRK06777 221 MSALRTLCDEHGILLIADEVQTGFAR 246 (421)
T ss_pred HHHHHHHHHHcCCEEEEechhhCCcc
Confidence 89999999999999999999988643
No 306
>PRK07036 hypothetical protein; Provisional
Probab=71.86 E-value=4.8 Score=29.09 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=27.0
Q ss_pred eeeeeC----HHHHHHHHHHcCcEEEecccccceee
Q psy14030 8 LGAFDP----IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 8 tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
-|.+-| +++|+++|++||+.+-+|=++.||..
T Consensus 233 gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGR 268 (466)
T PRK07036 233 GGVIVPPPGYHARMREICRRYDILYISDEVVTGFGR 268 (466)
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCc
Confidence 355566 89999999999999999999988744
No 307
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=71.81 E-value=4.7 Score=27.34 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=29.4
Q ss_pred cccceeeeeCHHHHHHHHHHc--CcEEEeccccccee
Q psy14030 4 GTTVLGAFDPIPAIADICAEY--DMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~--~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+.+++.++++.. +.++-+|-+|+.+.
T Consensus 163 p~NPTG~~~s~~~~~~l~~~~~~~~~iI~De~y~~~~ 199 (357)
T PRK14809 163 PHNPTGSEIPLDEVEALAERTDEETLVVVDEAYGEFA 199 (357)
T ss_pred CCCCCCcCCCHHHHHHHHHhCccCcEEEEechhhhcc
Confidence 578999999998888888754 78999999998754
No 308
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=71.76 E-value=4.5 Score=27.52 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=29.0
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+=+.++|.++++++++ +-+|-+|..+.
T Consensus 157 P~NPTG~~~~~~~l~~l~~~~~~-~IiDE~y~~~~ 190 (360)
T PRK07392 157 PHNPTGKLWSREAILPLLEQFAL-VVVDEAFMDFL 190 (360)
T ss_pred CCCCCCCCcCHHHHHHHHHHCCE-EEEECchhhhc
Confidence 47899999999999999999986 45599998765
No 309
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=71.72 E-value=5.6 Score=26.85 Aligned_cols=34 Identities=21% Similarity=0.134 Sum_probs=26.3
Q ss_pred cccceeeeeCHHHHHHH---HHHcCcEEEecccccce
Q psy14030 4 GTTVLGAFDPIPAIADI---CAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i---~~~~~~~~HvDaa~gg~ 37 (63)
.+|.||.+=+.+++.++ ++++++++-+|=+|..+
T Consensus 133 P~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~ 169 (330)
T PRK05664 133 PNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDN 169 (330)
T ss_pred CcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccC
Confidence 57889988776665554 57789999999998654
No 310
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=71.39 E-value=9.2 Score=28.12 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCcEEEecccccceee
Q psy14030 14 IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 14 i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
++++.++|+|+|+.+-+|=+|.|+..
T Consensus 245 l~~l~~~~~~~gillI~DEVQtG~GR 270 (447)
T COG0160 245 LKALRKLCREHGILLIADEVQTGFGR 270 (447)
T ss_pred HHHHHHHHHHcCCEEEEeccccCCCc
Confidence 78999999999999999999999876
No 311
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=71.05 E-value=2.6 Score=30.30 Aligned_cols=26 Identities=19% Similarity=0.186 Sum_probs=18.1
Q ss_pred CHHHHHHHHHHcCcEEEeccccccee
Q psy14030 13 PIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 13 ~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
+++++.++++++++++.+|++-|.+.
T Consensus 158 ~~~el~~la~~~~lp~i~DlgsG~l~ 183 (367)
T PF03841_consen 158 SLEELAELAKEHGLPVIVDLGSGLLV 183 (367)
T ss_dssp ---HHHHHHHHHT--EEEE-TTHHHH
T ss_pred cHHHHHHHHhhcCCcEEEECCCCCCc
Confidence 78999999999999999999987654
No 312
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=70.87 E-value=4.6 Score=28.73 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=23.0
Q ss_pred HHHHHHHHHHcCcEEEeccccccee
Q psy14030 14 IPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 14 i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
+++|.++|+++++++-+|=+|.|+.
T Consensus 221 l~~l~~l~~~~g~llI~DEv~tG~g 245 (425)
T PRK07495 221 MKALRELCDQHGILLIADEVQTGFA 245 (425)
T ss_pred HHHHHHHHHHcCCEEEEechhhcCC
Confidence 8999999999999999999998764
No 313
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=70.84 E-value=4.9 Score=28.63 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCcEEEecccccceee
Q psy14030 14 IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 14 i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
+++|.++|+++++++-.|=+|.|+..
T Consensus 242 l~~l~~l~~~~gillI~DEV~tg~gr 267 (451)
T PRK06918 242 VQEVRNICSEHGILFVADEIQTGFAR 267 (451)
T ss_pred HHHHHHHHHHcCCEEEEeccccCcCc
Confidence 88899999999999999999988754
No 314
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=70.21 E-value=5.2 Score=28.18 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=23.0
Q ss_pred HHHHHHHHHHcCcEEEeccccccee
Q psy14030 14 IPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 14 i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
+++|.++|+++++++-+|=+|.++.
T Consensus 222 ~~~l~~l~~~~~~~lI~Dev~~g~g 246 (425)
T PRK08088 222 MQRLRALCDEHGIMLIADEVQTGAG 246 (425)
T ss_pred HHHHHHHHHHcCCEEEEeccccCCC
Confidence 8999999999999999999998753
No 315
>smart00642 Aamy Alpha-amylase domain.
Probab=70.20 E-value=3.8 Score=25.72 Aligned_cols=29 Identities=10% Similarity=0.231 Sum_probs=25.2
Q ss_pred ceeeeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030 7 VLGAFDPIPAIADICAEYDMWLHVDAAWG 35 (63)
Q Consensus 7 ~tG~id~i~~i~~i~~~~~~~~HvDaa~g 35 (63)
..|+.++++++++.|+++|+.+-+|.+.-
T Consensus 65 ~~Gt~~d~~~lv~~~h~~Gi~vilD~V~N 93 (166)
T smart00642 65 RFGTMEDFKELVDAAHARGIKVILDVVIN 93 (166)
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 56788999999999999999999998653
No 316
>PLN02672 methionine S-methyltransferase
Probab=69.81 E-value=4.2 Score=32.91 Aligned_cols=34 Identities=24% Similarity=0.475 Sum_probs=26.9
Q ss_pred cceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030 6 TVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 6 t~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
|.||.+=+ +++|.++|+++++++-+|-+|..+..
T Consensus 840 NPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~F 876 (1082)
T PLN02672 840 NPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEY 876 (1082)
T ss_pred CCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCcccc
Confidence 78888755 66666778899999999999986544
No 317
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=69.68 E-value=6.2 Score=28.36 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=27.5
Q ss_pred cccceeeeeCHH---HHHHHHHHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPIP---AIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i~---~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+.+ +|.++|+++++++-+|=+|+.+.
T Consensus 200 P~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~ 237 (468)
T PLN02450 200 PSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTV 237 (468)
T ss_pred CCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccc
Confidence 467889877655 55666778999999999998754
No 318
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=69.63 E-value=6 Score=27.99 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCcEEEecccccceee
Q psy14030 14 IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 14 i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
+++|.++|+++++++-+|=++.|+..
T Consensus 221 l~~l~~lc~~~g~llI~DEv~tg~gr 246 (421)
T PRK09792 221 VAAIRRLCDEHGIVMIADEVQSGFAR 246 (421)
T ss_pred HHHHHHHHHHcCCEEEEeccccCCCC
Confidence 89999999999999999999998644
No 319
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=69.25 E-value=3.4 Score=30.36 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=25.9
Q ss_pred eeeCHHHHHHHHHHcCcEEEecccc-cceeeecc
Q psy14030 10 AFDPIPAIADICAEYDMWLHVDAAW-GGGALVSR 42 (63)
Q Consensus 10 ~id~i~~i~~i~~~~~~~~HvDaa~-gg~~~~~~ 42 (63)
++.+++++.+++++|++.+-.|+|- +--.+|..
T Consensus 204 Sm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk 237 (471)
T COG3033 204 SMANMKAVYEIAKKYDIPVVMDAARFAENAYFIK 237 (471)
T ss_pred hHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhh
Confidence 4788999999999999999999974 33334543
No 320
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=69.25 E-value=4.2 Score=28.92 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=24.2
Q ss_pred eeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 11 FDPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 11 id~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+.+++|.++|++|++.+-+|-++.|+.
T Consensus 203 ~~~l~~l~~lc~~~g~lLI~DEv~tG~~ 230 (431)
T PRK06209 203 DGFLHEVRRLCHENGALFILDEMITGFR 230 (431)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcccccCC
Confidence 3448999999999999999999987764
No 321
>KOG1402|consensus
Probab=69.22 E-value=5.6 Score=28.96 Aligned_cols=34 Identities=24% Similarity=0.458 Sum_probs=28.2
Q ss_pred cceeeeeC----HHHHHHHHHHcCcEEEecccccceee
Q psy14030 6 TVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 6 t~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.|.|++-| +++++++|++|++.+-.|-.|.|...
T Consensus 218 GEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~R 255 (427)
T KOG1402|consen 218 GEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLAR 255 (427)
T ss_pred cccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccc
Confidence 35666666 88999999999999999999988553
No 322
>PRK05965 hypothetical protein; Provisional
Probab=69.21 E-value=6.8 Score=28.20 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=23.9
Q ss_pred HHHHHHHHHHcCcEEEecccccceee
Q psy14030 14 IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 14 i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
+++|+++|+++|+.+.+|=++.||..
T Consensus 238 l~~lr~lc~~~gillI~DEV~tGfGR 263 (459)
T PRK05965 238 LKAMREACRELGILFVADEVITGFGR 263 (459)
T ss_pred HHHHHHHHHHcCCEEEEechhccCcc
Confidence 78999999999999999999998855
No 323
>PRK07480 putative aminotransferase; Validated
Probab=68.94 E-value=7.1 Score=28.11 Aligned_cols=32 Identities=34% Similarity=0.517 Sum_probs=27.1
Q ss_pred eeeeeC----HHHHHHHHHHcCcEEEecccccceee
Q psy14030 8 LGAFDP----IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 8 tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
-|.+-| +++|+++|++||+.+-+|=++.||..
T Consensus 232 gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGR 267 (456)
T PRK07480 232 GGVIIPPATYWPEIQRICRKYDILLVADEVICGFGR 267 (456)
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCc
Confidence 355555 89999999999999999999988754
No 324
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=68.85 E-value=6.1 Score=31.68 Aligned_cols=28 Identities=7% Similarity=-0.084 Sum_probs=24.3
Q ss_pred cceeeeeCHHHHHHHHHHcCcEEEecccc
Q psy14030 6 TVLGAFDPIPAIADICAEYDMWLHVDAAW 34 (63)
Q Consensus 6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~ 34 (63)
+.+|.+.|+++|.++|++.|+.+-| +++
T Consensus 244 ~~~G~v~dv~~I~~~ah~~GaL~iV-aad 271 (993)
T PLN02414 244 ATDGEVLDYAEFVKNAHANGVKVVM-ATD 271 (993)
T ss_pred CCCeEEcCHHHHHHHHHHcCCEEEE-EEC
Confidence 4689999999999999999988888 443
No 325
>PRK09275 aspartate aminotransferase; Provisional
Probab=68.70 E-value=5.9 Score=29.47 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=27.4
Q ss_pred cccceeeeeC---HHHHHHHHHH--cCcEEEeccccccee
Q psy14030 4 GTTVLGAFDP---IPAIADICAE--YDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~--~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+ +++|+++|++ +++|+-+|-+|+.+.
T Consensus 250 P~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~ 289 (527)
T PRK09275 250 PSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFV 289 (527)
T ss_pred CcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhc
Confidence 5788998877 6666677754 489999999998754
No 326
>PRK07482 hypothetical protein; Provisional
Probab=68.58 E-value=7.3 Score=28.08 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=23.9
Q ss_pred HHHHHHHHHHcCcEEEecccccceee
Q psy14030 14 IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 14 i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
+++|+++|+++|+.+-+|=++.||..
T Consensus 243 l~~lr~lc~~~giLlI~DEV~tGfGR 268 (461)
T PRK07482 243 WPAIQAVLKKYDILLIADEVVTGFGR 268 (461)
T ss_pred HHHHHHHHHHhCCEEEEeccccCCCc
Confidence 78999999999999999999998865
No 327
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=68.25 E-value=2.6 Score=29.17 Aligned_cols=33 Identities=12% Similarity=-0.100 Sum_probs=25.0
Q ss_pred CccccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 2 FPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 2 t~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
|-..|.||+..| ++++.+++.+-||++++....
T Consensus 137 th~ETstGv~~~-----~l~~~~~~l~iVDavss~g~~ 169 (349)
T TIGR01364 137 CANETIHGVEFR-----ELPDVKNAPLVADMSSNILSR 169 (349)
T ss_pred cCCCCcccEecc-----eecccCCCeEEEEccccccCc
Confidence 345788999876 666678999999998865443
No 328
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=68.19 E-value=7.3 Score=27.77 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=23.9
Q ss_pred HHHHHHHHHHcCcEEEecccccceee
Q psy14030 14 IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 14 i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
+++|+++|+++|+.+-+|=+|.||..
T Consensus 242 l~~lr~lc~~~gillI~DEV~tGfgR 267 (443)
T PRK06058 242 LPALLEWCRENGVVFIADEVQTGFAR 267 (443)
T ss_pred HHHHHHHHHHcCCEEEEeccccCCCc
Confidence 89999999999999999999988754
No 329
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=67.12 E-value=8.6 Score=24.87 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=25.5
Q ss_pred eeeeeCHHHHHHHHHHcC--cEEEecccccc
Q psy14030 8 LGAFDPIPAIADICAEYD--MWLHVDAAWGG 36 (63)
Q Consensus 8 tG~id~i~~i~~i~~~~~--~~~HvDaa~gg 36 (63)
+|.+..++++.+.+++.| +.+|+|-..|.
T Consensus 27 ~g~I~~l~~~v~~~~~~gK~vfVHiDli~Gl 57 (175)
T PF04309_consen 27 TGDIGNLKDIVKRLKAAGKKVFVHIDLIEGL 57 (175)
T ss_dssp SEECCCHHHHHHHHHHTT-EEEEECCGEETB
T ss_pred cCcHHHHHHHHHHHHHcCCEEEEEehhcCCC
Confidence 588999999999999876 89999998775
No 330
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=66.88 E-value=6.7 Score=28.08 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=23.7
Q ss_pred eCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 12 DPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 12 d~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
..+++|+++|+++++.+-+|=++.|+.
T Consensus 226 ~~L~~l~~lc~~~g~lLI~DEv~tG~G 252 (428)
T PRK07986 226 EWLKRVRKLCDREGILLIADEIATGFG 252 (428)
T ss_pred HHHHHHHHHHHHcCCEEEEeccccCCc
Confidence 348999999999999999999987763
No 331
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=66.39 E-value=5.6 Score=26.10 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=24.9
Q ss_pred eeeeeCHHHHHHHHHHcC--cEEEecccccce
Q psy14030 8 LGAFDPIPAIADICAEYD--MWLHVDAAWGGG 37 (63)
Q Consensus 8 tG~id~i~~i~~i~~~~~--~~~HvDaa~gg~ 37 (63)
+|.+-+++++...+++.| +++|+|-..|..
T Consensus 31 ~~~i~~ik~ivk~lK~~gK~vfiHvDLv~Gl~ 62 (181)
T COG1954 31 TGHILNIKEIVKKLKNRGKTVFIHVDLVEGLS 62 (181)
T ss_pred echhhhHHHHHHHHHhCCcEEEEEeHHhcccC
Confidence 567778999999999875 899999988863
No 332
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=66.18 E-value=6.6 Score=28.19 Aligned_cols=30 Identities=23% Similarity=0.312 Sum_probs=24.9
Q ss_pred eeeeeC----HHHHHHHHHHcCcEEEecccccce
Q psy14030 8 LGAFDP----IPAIADICAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 8 tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~ 37 (63)
-|.+-| +++|.++|++|++.+-+|=++.|+
T Consensus 214 ~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~ 247 (433)
T PRK00615 214 MGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF 247 (433)
T ss_pred CCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc
Confidence 355555 459999999999999999999776
No 333
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=66.12 E-value=4.7 Score=29.11 Aligned_cols=30 Identities=17% Similarity=0.137 Sum_probs=26.7
Q ss_pred ccceeeeeCHHHHHHHHHHcCcEEEecccc
Q psy14030 5 TTVLGAFDPIPAIADICAEYDMWLHVDAAW 34 (63)
Q Consensus 5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~ 34 (63)
.+..|+.++++++++.|+++|+++-+|.+.
T Consensus 74 d~~fGt~~dl~~Li~~~H~~Gi~vi~D~V~ 103 (479)
T PRK09441 74 RTKYGTKEELLNAIDALHENGIKVYADVVL 103 (479)
T ss_pred CcCcCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 457788899999999999999999999964
No 334
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=65.42 E-value=12 Score=27.30 Aligned_cols=27 Identities=22% Similarity=0.129 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHcCcEEEecccccceee
Q psy14030 13 PIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 13 ~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
+++++.++++++++++-+|++-|...-
T Consensus 175 ~~~~l~~ia~~~~lpvivD~aSg~~v~ 201 (395)
T COG1921 175 SEEELVEIAHEKGLPVIVDLASGALVD 201 (395)
T ss_pred cHHHHHHHHHHcCCCEEEecCCccccc
Confidence 578899999999999999999886544
No 335
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=64.86 E-value=9.5 Score=27.73 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCcEEEecccccceee
Q psy14030 14 IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 14 i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
+++++++|+++|+.+..|=+|.||..
T Consensus 260 l~~lr~lc~~~gillI~DEV~TGfGR 285 (472)
T PRK08742 260 LRRARELCDAHGAFLIADEIATGFGR 285 (472)
T ss_pred HHHHHHHHHHcCCEEEEechhhCCCC
Confidence 78999999999999999999988754
No 336
>PRK07483 hypothetical protein; Provisional
Probab=64.46 E-value=7.4 Score=27.90 Aligned_cols=31 Identities=29% Similarity=0.562 Sum_probs=26.4
Q ss_pred eeeeC----HHHHHHHHHHcCcEEEecccccceee
Q psy14030 9 GAFDP----IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 9 G~id~----i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
|.+-| +++|+++|+++++.+.+|=+|.||..
T Consensus 214 G~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGR 248 (443)
T PRK07483 214 GAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGR 248 (443)
T ss_pred CeEeCCHHHHHHHHHHHHHhCCEEEEecceeCccc
Confidence 44554 89999999999999999999998754
No 337
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=64.36 E-value=9.6 Score=27.44 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCcEEEecccccceee
Q psy14030 14 IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 14 i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
+++++++|+++|+.+.+|=+|.|+..
T Consensus 245 l~~lr~lc~~~gillI~DEV~TG~GR 270 (453)
T PRK06943 245 LRGLRALCDRYGVHLIADEIAVGCGR 270 (453)
T ss_pred HHHHHHHHHHcCCEEEeechhhCCCC
Confidence 88999999999999999999988754
No 338
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=64.16 E-value=7.6 Score=28.00 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCcEEEecccccceee
Q psy14030 14 IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 14 i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
+++|+++|+++|+.+-+|=++.|+..
T Consensus 251 l~~lr~lc~~~g~llI~DEV~tG~GR 276 (459)
T PRK06082 251 WKRVREICDKHNVLLIIDEIPNGMGR 276 (459)
T ss_pred HHHHHHHHHHcCCEEEEechhhCCCc
Confidence 89999999999999999999998654
No 339
>PF05670 DUF814: Domain of unknown function (DUF814); InterPro: IPR008532 This domain occurs in proteins that have been annotated as Fibronectin/fibrinogen binding protein by similarity. This annotation comes from O34693 from SWISSPROT where the N-terminal region is involved in this activity []. Hence the activity of this C-terminal domain is unknown. This domain contains a conserved motif D/E-X-W/Y-X-H that may be functionally important.
Probab=63.78 E-value=9 Score=21.65 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=17.0
Q ss_pred HHHHHHcCcEEEecccccceeee
Q psy14030 18 ADICAEYDMWLHVDAAWGGGALV 40 (63)
Q Consensus 18 ~~i~~~~~~~~HvDaa~gg~~~~ 40 (63)
.+.+++.++|||++..=|....+
T Consensus 24 ~k~~~~~D~wfH~~~~pg~hvil 46 (90)
T PF05670_consen 24 KKYARPNDLWFHADDFPGPHVIL 46 (90)
T ss_pred HHhhhhcceeEeccCCCCCEEEE
Confidence 56777889999999766655443
No 340
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=63.78 E-value=7.7 Score=27.98 Aligned_cols=26 Identities=15% Similarity=0.164 Sum_probs=23.4
Q ss_pred HHHHHHHHHHcCcEEEecccccceee
Q psy14030 14 IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 14 i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
+++|.++|+++++.+-+|=++.||..
T Consensus 245 l~~l~~lc~~~g~llI~DEv~tG~Gr 270 (457)
T PRK05639 245 FKELKKLLDEHGILLVMDEVQTGIGR 270 (457)
T ss_pred HHHHHHHHHHcCCEEEEechhhccCc
Confidence 88999999999999999999988643
No 341
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=63.52 E-value=8.3 Score=27.47 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=24.7
Q ss_pred eeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 11 FDPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 11 id~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.+.+++|.++|+++++.+-+|=++.|+..
T Consensus 221 ~~~l~~lr~lc~~~g~llI~DEv~tG~Gr 249 (422)
T PRK05630 221 VALIEGVRTLCDKHDILLIADEIATGFGR 249 (422)
T ss_pred HHHHHHHHHHHHHcCCEEEEecceeCCCc
Confidence 34589999999999999999999887643
No 342
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]
Probab=63.32 E-value=13 Score=28.24 Aligned_cols=41 Identities=20% Similarity=0.206 Sum_probs=34.6
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccc
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKH 44 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~ 44 (63)
.-|.-|++-++++|++.+.++++|+-+|-+.+...-+++..
T Consensus 174 npTYdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l 214 (557)
T COG1982 174 NPTYDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPML 214 (557)
T ss_pred cCccceEeecHHHHHHHHhhcCceEEhhhcCcccccccccC
Confidence 34678999999999999999999999999988766665543
No 343
>PRK06149 hypothetical protein; Provisional
Probab=63.31 E-value=8.2 Score=30.47 Aligned_cols=32 Identities=9% Similarity=-0.058 Sum_probs=27.4
Q ss_pred eeeeeC----HHHHHHHHHHcCcEEEecccccceee
Q psy14030 8 LGAFDP----IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 8 tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
-|.+-+ +++|.++|++||+.+-+|=+|.||..
T Consensus 757 gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGR 792 (972)
T PRK06149 757 AGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGR 792 (972)
T ss_pred CCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCc
Confidence 366667 99999999999999999999977644
No 344
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=63.19 E-value=8.3 Score=26.50 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=22.9
Q ss_pred HHHHHHHHHHcCcEEEecccccceee
Q psy14030 14 IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 14 i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
+++|.++|+++|+.+=+|=++.|+..
T Consensus 200 l~~l~~lc~~~gillI~DEV~tG~gR 225 (339)
T PF00202_consen 200 LRELRELCREHGILLIADEVQTGFGR 225 (339)
T ss_dssp HHHHHHHHHHTT-EEEEEETTTTTTT
T ss_pred hhehcccccccccceecccccccccc
Confidence 78999999999999999999998754
No 345
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=63.08 E-value=8.9 Score=26.94 Aligned_cols=36 Identities=11% Similarity=0.074 Sum_probs=31.5
Q ss_pred cccceeeeeCHHHHHHHHHHc--CcEEEecccccceee
Q psy14030 4 GTTVLGAFDPIPAIADICAEY--DMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~--~~~~HvDaa~gg~~~ 39 (63)
.||.||.+-+.++|.++++.. +..+-+|-||.-|.-
T Consensus 154 PNNPTG~~~~~~~l~~l~~~~~~~~~vVvDEAY~eF~~ 191 (356)
T COG0079 154 PNNPTGTLLPREELRALLEALPEGGLVVIDEAYIEFSP 191 (356)
T ss_pred CCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhcCC
Confidence 589999999999999999864 789999999987765
No 346
>PRK08297 L-lysine aminotransferase; Provisional
Probab=62.45 E-value=8.5 Score=27.58 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=24.8
Q ss_pred eCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 12 DPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 12 d~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
+-+++|+++|+++|+.+-+|=+|.|+..
T Consensus 246 ~yl~~lr~lc~~~g~llI~DEV~tGfGR 273 (443)
T PRK08297 246 EFFAAMRELCDEHDALLIFDEVQTGVGL 273 (443)
T ss_pred HHHHHHHHHHHHcCCEEEEechhhccCc
Confidence 5689999999999999999999988744
No 347
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=62.44 E-value=8.5 Score=27.50 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=22.0
Q ss_pred HHHHHHHHHHcCcEEEecccccce
Q psy14030 14 IPAIADICAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 14 i~~i~~i~~~~~~~~HvDaa~gg~ 37 (63)
+++++++|++||+.+-+|=++.|+
T Consensus 230 l~~l~~lc~~~g~llI~DEv~tG~ 253 (429)
T PRK06173 230 LVKARELCDQYGVLLIFDEIATGF 253 (429)
T ss_pred HHHHHHHHHHcCCeEEecchhcCC
Confidence 789999999999999999998775
No 348
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=61.85 E-value=3.4 Score=28.38 Aligned_cols=32 Identities=13% Similarity=-0.031 Sum_probs=23.1
Q ss_pred ccccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
-..|.||.+ +. ++++.+|+.+-||++|.....
T Consensus 146 h~~t~tG~~--~~---~i~~~~g~~~~VDa~qs~g~~ 177 (355)
T cd00611 146 SNETIHGVE--FD---EVPDTGGVPLVADMSSNILSR 177 (355)
T ss_pred CCcccccEE--cc---eecccCCCeEEEEccccccCC
Confidence 456788887 22 344558999999999876554
No 349
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=60.96 E-value=12 Score=25.51 Aligned_cols=35 Identities=17% Similarity=0.023 Sum_probs=27.9
Q ss_pred cccceeeeeCHHHHHHHH---HHcCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPIPAIADIC---AEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~---~~~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+=+.+++.+++ ++++.++-+|=+|..+.
T Consensus 139 PnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~ 176 (339)
T PRK06959 139 PNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTL 176 (339)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCC
Confidence 478999998877777765 46788999999998764
No 350
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=60.75 E-value=12 Score=29.42 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=24.6
Q ss_pred HHHHHHHHHHcCcEEEecccccceeee
Q psy14030 14 IPAIADICAEYDMWLHVDAAWGGGALV 40 (63)
Q Consensus 14 i~~i~~i~~~~~~~~HvDaa~gg~~~~ 40 (63)
+++++++|+++|+.+..|=++.||...
T Consensus 608 l~~lr~lc~~~gilLI~DEV~TGfGRt 634 (817)
T PLN02974 608 QRALVQVCRSRKIPVIFDEVFTGLWRL 634 (817)
T ss_pred HHHHHHHHHHhCCEEEEeecccCCCcc
Confidence 789999999999999999999998653
No 351
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=59.91 E-value=8.1 Score=27.49 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=24.4
Q ss_pred eeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 11 FDPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 11 id~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
...+++|.++|+++++.+-+|=++.|+.
T Consensus 228 ~~~l~~l~~lc~~~~~llI~DEv~tG~G 255 (427)
T TIGR00508 228 PTYLKRVQALCKQYDILLIADEIATGFG 255 (427)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 4779999999999999999999987653
No 352
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=58.46 E-value=3.5 Score=33.11 Aligned_cols=32 Identities=28% Similarity=0.440 Sum_probs=29.1
Q ss_pred eeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 8 LGAFDPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 8 tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.|.++.++++.+.++++|.++-+-|++||...
T Consensus 141 ~~~~~~~ee~~~fa~~~gyPvmiKA~~GGGGR 172 (1149)
T COG1038 141 DGPIETIEEALEFAEEYGYPVMIKAAAGGGGR 172 (1149)
T ss_pred CCCcccHHHHHHHHHhcCCcEEEEEccCCCcc
Confidence 47789999999999999999999999998764
No 353
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=57.93 E-value=5.6 Score=26.16 Aligned_cols=27 Identities=26% Similarity=0.220 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHcCc-EEEecccccceee
Q psy14030 13 PIPAIADICAEYDM-WLHVDAAWGGGAL 39 (63)
Q Consensus 13 ~i~~i~~i~~~~~~-~~HvDaa~gg~~~ 39 (63)
.+++-.+.+++.++ |+|+|.-=|-|.-
T Consensus 20 ~l~~~~~~l~~~~~~~~H~DimDg~fvp 47 (228)
T PTZ00170 20 KLADEAQDVLSGGADWLHVDVMDGHFVP 47 (228)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCccCC
Confidence 34555666667776 9999987766553
No 354
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=57.72 E-value=14 Score=26.69 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCcEEEecccccceee
Q psy14030 14 IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 14 i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
+++|+++|+++++.+-+|=.+.||..
T Consensus 238 l~~lr~lc~~~g~llI~DEV~TGfGR 263 (466)
T PRK07030 238 LKLLREACDRYGVHLIHDEIAVGFGR 263 (466)
T ss_pred HHHHHHHHHHcCCEEEEeehhhCcCc
Confidence 78999999999999999999988754
No 355
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=57.15 E-value=11 Score=26.06 Aligned_cols=19 Identities=21% Similarity=0.466 Sum_probs=18.4
Q ss_pred eeCHHHHHHHHHHcCcEEE
Q psy14030 11 FDPIPAIADICAEYDMWLH 29 (63)
Q Consensus 11 id~i~~i~~i~~~~~~~~H 29 (63)
.|||+.+.+.|+++|+-+|
T Consensus 69 ~DpL~~~I~eaHkrGlevH 87 (311)
T PF02638_consen 69 FDPLEFMIEEAHKRGLEVH 87 (311)
T ss_pred ccHHHHHHHHHHHcCCEEE
Confidence 8999999999999999999
No 356
>PRK07678 aminotransferase; Validated
Probab=57.03 E-value=12 Score=26.91 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=23.9
Q ss_pred HHHHHHHHHHcCcEEEecccccceee
Q psy14030 14 IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 14 i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
+++++++|+++|+.+-+|=++.||..
T Consensus 236 l~~lr~lc~~~g~llI~DEV~tGfGR 261 (451)
T PRK07678 236 MKAVKEICQKHGALLISDEVICGFGR 261 (451)
T ss_pred HHHHHHHHHHcCCEEEEeehhhcCCc
Confidence 89999999999999999999988755
No 357
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=56.75 E-value=13 Score=26.94 Aligned_cols=26 Identities=23% Similarity=0.173 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCcEEEecccccceee
Q psy14030 14 IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 14 i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
+++++++|+++|+.+-.|=++.||..
T Consensus 254 l~~lr~lc~~~giLlI~DEV~tGfGR 279 (464)
T PRK06938 254 LRGLRRITEEAGIPLIVDEIQSGFGR 279 (464)
T ss_pred HHHHHHHHHHcCCEEEEeccccCCCc
Confidence 78999999999999999999988854
No 358
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=55.73 E-value=14 Score=26.93 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=24.8
Q ss_pred eeeeeC----HHHHHHHHHHcCcEEEecccccce
Q psy14030 8 LGAFDP----IPAIADICAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 8 tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~ 37 (63)
.|.+-| +++|.++|+++|+.+-+|=++.|+
T Consensus 259 ~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf 292 (474)
T PLN02482 259 SGFIVPKKEFLEGLREITKENGALLVFDEVMTGF 292 (474)
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe
Confidence 355555 558999999999999999999876
No 359
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=55.02 E-value=13 Score=25.68 Aligned_cols=35 Identities=9% Similarity=0.076 Sum_probs=26.4
Q ss_pred cccceeeeeCHHHHHHHHHH--cCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPIPAIADICAE--YDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~--~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+.+++.++++. .+.++.+|-+|..+.
T Consensus 160 P~NPTG~~~~~~~l~~l~~~~~~~~~~iiDe~y~~~~ 196 (366)
T PRK01533 160 PNNPTGTYVNDRKLTQFIEGISENTLIVIDEAYYEYV 196 (366)
T ss_pred CCCCCCCCcCHHHHHHHHHhCCCCCEEEEEccHHHhh
Confidence 58999999998888887763 234667899987543
No 360
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=52.86 E-value=19 Score=25.97 Aligned_cols=26 Identities=15% Similarity=0.433 Sum_probs=23.3
Q ss_pred HHHHHHHHHHcCcEEEecccccceee
Q psy14030 14 IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 14 i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
++++.++|+++++.+-+|=++.|+..
T Consensus 247 l~~lr~lc~~~g~llI~DEV~TG~GR 272 (460)
T PRK06916 247 LKGLRNLCTKYNVLFITDEVATGFGR 272 (460)
T ss_pred HHHHHHHHHHcCCEEEeechhhCCCc
Confidence 78999999999999999999988644
No 361
>PRK08637 hypothetical protein; Provisional
Probab=52.79 E-value=15 Score=25.34 Aligned_cols=36 Identities=22% Similarity=0.105 Sum_probs=26.1
Q ss_pred cccceeeeeC---HHHHHHHHHH-----cCcEEEecccccceee
Q psy14030 4 GTTVLGAFDP---IPAIADICAE-----YDMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~id~---i~~i~~i~~~-----~~~~~HvDaa~gg~~~ 39 (63)
.+|.||.+=+ +++|+++|++ +++++-+|-+|..+..
T Consensus 155 P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~ 198 (388)
T PRK08637 155 PNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFY 198 (388)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhccc
Confidence 4688887655 4555555554 8999999999987653
No 362
>PRK07481 hypothetical protein; Provisional
Probab=52.53 E-value=15 Score=26.29 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCcEEEecccccceee
Q psy14030 14 IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 14 i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
+++++++|+++++.+-.|=++.||..
T Consensus 236 l~~lr~lc~~~g~llI~DEV~tGfGR 261 (449)
T PRK07481 236 WPLVREVCDRHGILLIADEVVTGFGR 261 (449)
T ss_pred HHHHHHHHHHcCCEEEEeehhhCcCc
Confidence 89999999999999999999988754
No 363
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=52.38 E-value=16 Score=24.65 Aligned_cols=32 Identities=22% Similarity=0.195 Sum_probs=27.7
Q ss_pred ccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030 5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGG 36 (63)
Q Consensus 5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg 36 (63)
....|.+.+.+++.+.+++.++.+-+||++-.
T Consensus 45 ~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPf 76 (248)
T PRK08057 45 PVRVGGFGGAEGLAAYLREEGIDLVIDATHPY 76 (248)
T ss_pred eEEECCCCCHHHHHHHHHHCCCCEEEECCCcc
Confidence 44578888999999999999999999998763
No 364
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=51.94 E-value=11 Score=27.91 Aligned_cols=32 Identities=16% Similarity=0.275 Sum_probs=27.6
Q ss_pred ccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030 5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGG 36 (63)
Q Consensus 5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg 36 (63)
+...|+.++++++++.|.+.|+.+-+|.++.-
T Consensus 153 ~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH 184 (542)
T TIGR02402 153 HNAYGGPDDLKALVDAAHGLGLGVILDVVYNH 184 (542)
T ss_pred ccccCCHHHHHHHHHHHHHCCCEEEEEEccCC
Confidence 45668889999999999999999999988754
No 365
>PRK10785 maltodextrin glucosidase; Provisional
Probab=51.83 E-value=11 Score=28.21 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=25.8
Q ss_pred cceeeeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030 6 TVLGAFDPIPAIADICAEYDMWLHVDAAWG 35 (63)
Q Consensus 6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~g 35 (63)
...|+.++++++++.|+++|+.|-+|.+.-
T Consensus 220 p~~Gt~~df~~Lv~~aH~rGikVilD~V~N 249 (598)
T PRK10785 220 PQLGGDAALLRLRHATQQRGMRLVLDGVFN 249 (598)
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 345778899999999999999999999753
No 366
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=50.58 E-value=18 Score=26.10 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCcEEEecccccceee
Q psy14030 14 IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 14 i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
++++.++|+++|+.+-.|=++.||..
T Consensus 248 l~~lr~lc~~~g~LlI~DEV~tGfGR 273 (459)
T PRK06931 248 LQKIREVTQKHGILLIVDEVQAGFAR 273 (459)
T ss_pred HHHHHHHHHHcCCEEEEecchhcCCc
Confidence 88999999999999999999998754
No 367
>PRK06917 hypothetical protein; Provisional
Probab=50.45 E-value=24 Score=25.37 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=23.3
Q ss_pred HHHHHHHHHHcCcEEEecccccceee
Q psy14030 14 IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 14 i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
+++|.++|+++++.+-+|=++.||..
T Consensus 223 l~~lr~lc~~~g~llI~DEv~tGfGR 248 (447)
T PRK06917 223 YKVIKEICDHYDILFIADEVMTGLGR 248 (447)
T ss_pred HHHHHHHHHHcCCEEEEechhhCcCc
Confidence 78999999999999999999988644
No 368
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=49.26 E-value=14 Score=26.95 Aligned_cols=26 Identities=27% Similarity=0.589 Sum_probs=20.4
Q ss_pred eeCHHHHHHHHHHcCcE-----EEecccccc
Q psy14030 11 FDPIPAIADICAEYDMW-----LHVDAAWGG 36 (63)
Q Consensus 11 id~i~~i~~i~~~~~~~-----~HvDaa~gg 36 (63)
-+.+.+|.++|+++|+. +|.|-++.|
T Consensus 177 ~eeL~~i~elc~kh~v~VISDEIHaDlv~~g 207 (388)
T COG1168 177 KEELRKIAELCLRHGVRVISDEIHADLVLGG 207 (388)
T ss_pred HHHHHHHHHHHHHcCCEEEeecccccccccC
Confidence 57789999999999987 456666655
No 369
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=49.22 E-value=19 Score=26.28 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCcEEEecccccceee
Q psy14030 14 IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 14 i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
+++++++|+++|+.+-.|=.|.|+..
T Consensus 207 l~~lr~lCd~~g~LLI~DEVQtG~GR 232 (404)
T COG4992 207 LKALRELCDEHGALLILDEVQTGLGR 232 (404)
T ss_pred HHHHHHHHHHhCeEEEEeccccCCCc
Confidence 78899999999999999999999764
No 370
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=48.34 E-value=17 Score=27.04 Aligned_cols=40 Identities=18% Similarity=0.375 Sum_probs=32.5
Q ss_pred ceeeeeCHHHHHHHHHHcCcEEEecc------cccceeeecccchh
Q psy14030 7 VLGAFDPIPAIADICAEYDMWLHVDA------AWGGGALVSRKHRH 46 (63)
Q Consensus 7 ~tG~id~i~~i~~i~~~~~~~~HvDa------a~gg~~~~~~~~~~ 46 (63)
.-|++.+++++.++|++.++++-+|= =|-|..++.|..++
T Consensus 153 ~KG~L~~~q~~I~~ar~~~~pVLvDPKg~Df~~Y~GAtLiTPN~~E 198 (467)
T COG2870 153 AKGVLTNVQKMIDLAREAGIPVLVDPKGKDFEKYRGATLITPNLKE 198 (467)
T ss_pred ccccchhHHHHHHHHHHcCCcEEECCCCcchhhhCCCeecCCCHHH
Confidence 45889999999999999999999995 57777777765443
No 371
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=47.60 E-value=14 Score=25.88 Aligned_cols=27 Identities=7% Similarity=0.148 Sum_probs=25.1
Q ss_pred ceeeeeCHHHHHHHHHHcCcEEEeccc
Q psy14030 7 VLGAFDPIPAIADICAEYDMWLHVDAA 33 (63)
Q Consensus 7 ~tG~id~i~~i~~i~~~~~~~~HvDaa 33 (63)
..|+.++++++.+.++++|+++-.|.+
T Consensus 72 ~~Gt~~d~~~li~~~H~~gi~vi~D~V 98 (505)
T COG0366 72 HFGTEEDFKELVEEAHKRGIKVILDLV 98 (505)
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 578999999999999999999999986
No 372
>PRK06392 homoserine dehydrogenase; Provisional
Probab=46.36 E-value=33 Score=23.97 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHcCcEEEecccccceeeecccc
Q psy14030 13 PIPAIADICAEYDMWLHVDAAWGGGALVSRKH 44 (63)
Q Consensus 13 ~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~ 44 (63)
..+++.+++++++..++..++-|+...+..-.
T Consensus 123 ~~~eL~~lA~~~g~~~~~eatV~~g~Pii~~~ 154 (326)
T PRK06392 123 HWHDIMDSASKNRRIIRYEATVAGGVPLFSLR 154 (326)
T ss_pred hHHHHHHHHHHcCCeEEEeeeeeeccchhhhh
Confidence 46889999999999999999998777655433
No 373
>PLN02361 alpha-amylase
Probab=46.27 E-value=16 Score=26.39 Aligned_cols=29 Identities=10% Similarity=0.188 Sum_probs=25.4
Q ss_pred cceeeeeCHHHHHHHHHHcCcEEEecccc
Q psy14030 6 TVLGAFDPIPAIADICAEYDMWLHVDAAW 34 (63)
Q Consensus 6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~ 34 (63)
+..|+.++++++.+.|+++|+.+-+|.+.
T Consensus 70 ~~~Gt~~el~~li~~~h~~gi~vi~D~V~ 98 (401)
T PLN02361 70 SAYGSEHLLKSLLRKMKQYNVRAMADIVI 98 (401)
T ss_pred cccCCHHHHHHHHHHHHHcCCEEEEEEcc
Confidence 45688889999999999999999999865
No 374
>PRK12313 glycogen branching enzyme; Provisional
Probab=45.69 E-value=16 Score=27.44 Aligned_cols=31 Identities=16% Similarity=0.125 Sum_probs=26.5
Q ss_pred ccceeeeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030 5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWG 35 (63)
Q Consensus 5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~g 35 (63)
+...|+.++++++++.|.++|+.|-.|.++.
T Consensus 213 ~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~n 243 (633)
T PRK12313 213 TSRYGTPEDFMYLVDALHQNGIGVILDWVPG 243 (633)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 3456888999999999999999999997654
No 375
>PLN00196 alpha-amylase; Provisional
Probab=45.64 E-value=15 Score=26.55 Aligned_cols=29 Identities=7% Similarity=0.063 Sum_probs=25.7
Q ss_pred cceeeeeCHHHHHHHHHHcCcEEEecccc
Q psy14030 6 TVLGAFDPIPAIADICAEYDMWLHVDAAW 34 (63)
Q Consensus 6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~ 34 (63)
+..|+-++++++.+.|+++|+.+-+|.+.
T Consensus 86 ~~fGt~~elk~Lv~~aH~~GIkVilDvV~ 114 (428)
T PLN00196 86 SKYGNEAQLKSLIEAFHGKGVQVIADIVI 114 (428)
T ss_pred ccCCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 45788899999999999999999999864
No 376
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=45.41 E-value=23 Score=22.31 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=20.9
Q ss_pred ceeeeeCHHHHHHHHHHcCcEEEec
Q psy14030 7 VLGAFDPIPAIADICAEYDMWLHVD 31 (63)
Q Consensus 7 ~tG~id~i~~i~~i~~~~~~~~HvD 31 (63)
..+..|+|+.+.+.|+++|+.|++-
T Consensus 60 ~~~~~d~l~~~L~~A~~~Gmkv~~G 84 (166)
T PF14488_consen 60 YMPPVDLLEMILDAADKYGMKVFVG 84 (166)
T ss_pred cCCcccHHHHHHHHHHHcCCEEEEe
Confidence 3467899999999999999988753
No 377
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=44.09 E-value=26 Score=23.58 Aligned_cols=32 Identities=16% Similarity=0.115 Sum_probs=27.4
Q ss_pred ccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030 5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGG 36 (63)
Q Consensus 5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg 36 (63)
....|.+-+.+++.+.++++++.+-+||++-.
T Consensus 46 ~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPf 77 (249)
T PF02571_consen 46 EVRVGRLGDEEGLAEFLRENGIDAVIDATHPF 77 (249)
T ss_pred eEEECCCCCHHHHHHHHHhCCCcEEEECCCch
Confidence 45677777889999999999999999998753
No 378
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=43.73 E-value=26 Score=25.91 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=23.5
Q ss_pred HHHHHHHHHHcCcEEEecccccceee
Q psy14030 14 IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 14 i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
++++.++|++|++.+-+|=.-.||..
T Consensus 238 l~~vr~iC~ky~ILlI~DEV~tGFGR 263 (449)
T COG0161 238 LKRVREICDKYGILLIADEVATGFGR 263 (449)
T ss_pred HHHHHHHHHHcCcEEEeecceeCCCc
Confidence 78999999999999999998888765
No 379
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=43.59 E-value=18 Score=26.86 Aligned_cols=30 Identities=10% Similarity=0.272 Sum_probs=25.6
Q ss_pred cceeeeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030 6 TVLGAFDPIPAIADICAEYDMWLHVDAAWG 35 (63)
Q Consensus 6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~g 35 (63)
...|+.++++++++.|+++|+.+-+|.+.-
T Consensus 75 ~~~Gt~~d~~~lv~~~h~~gi~vilD~V~N 104 (551)
T PRK10933 75 PTYGTLDDFDELVAQAKSRGIRIILDMVFN 104 (551)
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 456778899999999999999999998743
No 380
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=42.94 E-value=17 Score=26.69 Aligned_cols=30 Identities=17% Similarity=0.250 Sum_probs=25.3
Q ss_pred cceeeeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030 6 TVLGAFDPIPAIADICAEYDMWLHVDAAWG 35 (63)
Q Consensus 6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~g 35 (63)
...|+.++++++++.|+++|+.+-+|.+..
T Consensus 70 ~~~Gt~~df~~Lv~~ah~~Gi~vilD~V~N 99 (539)
T TIGR02456 70 PEFGTIDDFKDFVDEAHARGMRVIIDLVLN 99 (539)
T ss_pred hhhCCHHHHHHHHHHHHHCCCEEEEEeccC
Confidence 345778899999999999999999997654
No 381
>PRK05402 glycogen branching enzyme; Provisional
Probab=42.90 E-value=18 Score=27.69 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=27.0
Q ss_pred ccceeeeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030 5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWG 35 (63)
Q Consensus 5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~g 35 (63)
+...|+.++++++++.|.+.|+.|-+|.++.
T Consensus 308 ~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~N 338 (726)
T PRK05402 308 TSRFGTPDDFRYFVDACHQAGIGVILDWVPA 338 (726)
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 4567889999999999999999999998754
No 382
>PLN02681 proline dehydrogenase
Probab=42.63 E-value=17 Score=26.71 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=19.5
Q ss_pred eeCHHHHHHHHHHcCcEEEecccc
Q psy14030 11 FDPIPAIADICAEYDMWLHVDAAW 34 (63)
Q Consensus 11 id~i~~i~~i~~~~~~~~HvDaa~ 34 (63)
++.+.+|++.|++.|+.+.+|+=+
T Consensus 219 ~~rl~~i~~~A~~~gv~l~IDAE~ 242 (455)
T PLN02681 219 HERLQKLCERAAQLGVPLLIDAEY 242 (455)
T ss_pred HHHHHHHHHHHHHCCCEEEEeCCc
Confidence 445677888888999999999955
No 383
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=42.39 E-value=19 Score=27.03 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=26.8
Q ss_pred ccceeeeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030 5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWG 35 (63)
Q Consensus 5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~g 35 (63)
+...|+.++++++++.|.+.|+.+-+|.++.
T Consensus 199 ~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~N 229 (613)
T TIGR01515 199 TSRFGTPDDFMYFVDACHQAGIGVILDWVPG 229 (613)
T ss_pred ccccCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 4466788899999999999999999998764
No 384
>PRK09505 malS alpha-amylase; Reviewed
Probab=40.80 E-value=21 Score=27.52 Aligned_cols=29 Identities=10% Similarity=0.191 Sum_probs=25.5
Q ss_pred cceeeeeCHHHHHHHHHHcCcEEEecccc
Q psy14030 6 TVLGAFDPIPAIADICAEYDMWLHVDAAW 34 (63)
Q Consensus 6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~ 34 (63)
...|+.++++++++.|+++|+++-+|.+.
T Consensus 286 ~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~ 314 (683)
T PRK09505 286 ANMGTEADLRTLVDEAHQRGIRILFDVVM 314 (683)
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 45678889999999999999999999865
No 385
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=40.68 E-value=12 Score=24.44 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=18.0
Q ss_pred eeCHHHHHHHHHHcCc-EEEeccccccee
Q psy14030 11 FDPIPAIADICAEYDM-WLHVDAAWGGGA 38 (63)
Q Consensus 11 id~i~~i~~i~~~~~~-~~HvDaa~gg~~ 38 (63)
.-.+++-.+.+++.|+ |+|+|.-=|-|.
T Consensus 11 ~~~l~~~i~~l~~~g~d~lHiDiMDg~fv 39 (201)
T PF00834_consen 11 FLNLEEEIKRLEEAGADWLHIDIMDGHFV 39 (201)
T ss_dssp GGGHHHHHHHHHHTT-SEEEEEEEBSSSS
T ss_pred HHHHHHHHHHHHHcCCCEEEEeecccccC
Confidence 3445666666666664 899998666554
No 386
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=40.00 E-value=19 Score=26.40 Aligned_cols=29 Identities=24% Similarity=0.400 Sum_probs=22.2
Q ss_pred eeeCHHHHHHHHHHc--CcEEEeccccccee
Q psy14030 10 AFDPIPAIADICAEY--DMWLHVDAAWGGGA 38 (63)
Q Consensus 10 ~id~i~~i~~i~~~~--~~~~HvDaa~gg~~ 38 (63)
++++|+++.+..|+. ++.+-||-+||=|.
T Consensus 173 ~i~~I~~~i~~vk~~~p~~iifVDNCYGEFv 203 (403)
T PF06838_consen 173 TIEEIKEIIKFVKEINPDVIIFVDNCYGEFV 203 (403)
T ss_dssp -HHHHHHHHHHHHHH-TTSEEEEE-TTTTTT
T ss_pred CHHHHHHHHHHHHhhCCCeEEEEeCCcceec
Confidence 467788888888864 68999999999765
No 387
>PHA02754 hypothetical protein; Provisional
Probab=39.73 E-value=35 Score=18.77 Aligned_cols=16 Identities=19% Similarity=0.492 Sum_probs=13.2
Q ss_pred HHHHHHHHHHcCcEEE
Q psy14030 14 IPAIADICAEYDMWLH 29 (63)
Q Consensus 14 i~~i~~i~~~~~~~~H 29 (63)
..|+++++.+.|+|+|
T Consensus 20 MRelkD~LSe~GiYi~ 35 (67)
T PHA02754 20 MRELKDILSEAGIYID 35 (67)
T ss_pred HHHHHHHHhhCceEEE
Confidence 4677888888899988
No 388
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=39.01 E-value=23 Score=26.15 Aligned_cols=29 Identities=7% Similarity=0.284 Sum_probs=24.9
Q ss_pred cceeeeeCHHHHHHHHHHcCcEEEecccc
Q psy14030 6 TVLGAFDPIPAIADICAEYDMWLHVDAAW 34 (63)
Q Consensus 6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~ 34 (63)
...|+.++++++.+.|+++|+.+-+|.+.
T Consensus 69 ~~~Gt~~~~~~lv~~ah~~gi~vilD~v~ 97 (543)
T TIGR02403 69 PLFGTMADFEELVSEAKKRNIKIMLDMVF 97 (543)
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 34677889999999999999999999764
No 389
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=38.68 E-value=36 Score=23.33 Aligned_cols=35 Identities=11% Similarity=-0.000 Sum_probs=28.0
Q ss_pred cccceeeeeCHHHHHHHHHH-cCcEEEeccccccee
Q psy14030 4 GTTVLGAFDPIPAIADICAE-YDMWLHVDAAWGGGA 38 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~-~~~~~HvDaa~gg~~ 38 (63)
.+|.||.+-+.+++.++++- +++++-+|-+|..+.
T Consensus 177 P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~ 212 (374)
T PRK02610 177 PNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEFS 212 (374)
T ss_pred CCCCCCCCCCHHHHHHHHhccCCcEEEEeccccccC
Confidence 47889999888888877642 479999999998653
No 390
>KOG2467|consensus
Probab=38.48 E-value=30 Score=25.63 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=28.2
Q ss_pred ccccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030 3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGG 36 (63)
Q Consensus 3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg 36 (63)
+|++...-.=|..++++||.+-|.++-+|-|+-.
T Consensus 195 aG~SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHIS 228 (477)
T KOG2467|consen 195 AGTSAYSRLIDYARFRKIADKVGAYLMADMAHIS 228 (477)
T ss_pred eccccchhhccHHHHHHHHHhcCceeehhhhhHH
Confidence 5666666667889999999999999999998754
No 391
>KOG0259|consensus
Probab=38.20 E-value=68 Score=23.81 Aligned_cols=29 Identities=17% Similarity=0.320 Sum_probs=24.7
Q ss_pred eeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 11 FDPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 11 id~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
-+-+++|++.|+++++.+-.|=.|+-+..
T Consensus 218 ~~HL~kiae~A~klgi~vIaDEVY~~~vf 246 (447)
T KOG0259|consen 218 EDHLKKIAETAKKLGIMVIADEVYGHTVF 246 (447)
T ss_pred HHHHHHHHHHHHHhCCeEEehhhcceeec
Confidence 35589999999999999999998886554
No 392
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=37.65 E-value=36 Score=19.31 Aligned_cols=24 Identities=13% Similarity=0.012 Sum_probs=19.4
Q ss_pred HHHHHHHHHcCcEEEeccccccee
Q psy14030 15 PAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 15 ~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
.+|.+++++.+++++-|-..+-..
T Consensus 30 ~~I~~~A~e~~VPi~~~~~LAr~L 53 (82)
T TIGR00789 30 ERIIEIAKKHGIPIVEDPDLVDVL 53 (82)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHH
Confidence 578899999999999998665433
No 393
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=37.17 E-value=25 Score=17.37 Aligned_cols=15 Identities=13% Similarity=0.317 Sum_probs=11.0
Q ss_pred CHHHHHHHHHHcCcE
Q psy14030 13 PIPAIADICAEYDMW 27 (63)
Q Consensus 13 ~i~~i~~i~~~~~~~ 27 (63)
++.++.++|+++|+.
T Consensus 6 ~~~eL~~iAk~lgI~ 20 (43)
T PF07498_consen 6 TLSELREIAKELGIE 20 (43)
T ss_dssp -HHHHHHHHHCTT-T
T ss_pred CHHHHHHHHHHcCCC
Confidence 578899999998764
No 394
>KOG0634|consensus
Probab=36.84 E-value=28 Score=25.99 Aligned_cols=35 Identities=17% Similarity=0.148 Sum_probs=28.1
Q ss_pred ccccceeeeeC---HHHHHHHHHHcCcEEEecccccce
Q psy14030 3 PGTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 3 ~Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~ 37 (63)
.|.|.||.-=. -++|.++|++|++-+-.|=.|...
T Consensus 212 TgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~L 249 (472)
T KOG0634|consen 212 TGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYFL 249 (472)
T ss_pred CCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCcccee
Confidence 36778887555 467888999999999999998743
No 395
>COG2052 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.80 E-value=38 Score=19.59 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=18.4
Q ss_pred eCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 12 DPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 12 d~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
-|++++.+-++..+.. +||+||--.
T Consensus 28 aPiKRii~eArdr~~L--IDATYGRrT 52 (89)
T COG2052 28 APIKRIIQEARDRGML--IDATYGRRT 52 (89)
T ss_pred ccHHHHHHHHHhcCcE--EEcccCcee
Confidence 3688888888887654 688888643
No 396
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=36.75 E-value=28 Score=25.09 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=26.8
Q ss_pred ccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030 5 TTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 5 tt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.|.||..-+ -++|.++|+++++||--|-.|+-+..
T Consensus 237 qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~ 274 (459)
T COG1167 237 QNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRY 274 (459)
T ss_pred CCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhc
Confidence 455665444 56788899999999999999986554
No 397
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=36.68 E-value=35 Score=22.53 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.2
Q ss_pred ccceeeeeCHHHHHHHHHHcCcEEE
Q psy14030 5 TTVLGAFDPIPAIADICAEYDMWLH 29 (63)
Q Consensus 5 tt~tG~id~i~~i~~i~~~~~~~~H 29 (63)
|+.-|..++-.++.++++++|+++=
T Consensus 166 ns~~~~~~~~~~~~~~~~e~G~~~~ 190 (237)
T COG1387 166 NSRPGRLDPNSEILRLARELGVKLA 190 (237)
T ss_pred cCCcCccCchHHHHHHHHHhCCeEE
Confidence 5667889999999999999987764
No 398
>PRK06349 homoserine dehydrogenase; Provisional
Probab=36.34 E-value=30 Score=24.77 Aligned_cols=36 Identities=22% Similarity=0.154 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHcCcEEEecccccceeeecccchhhh
Q psy14030 13 PIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLL 48 (63)
Q Consensus 13 ~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~ 48 (63)
..++|.+++++.++.+...++.+++.......+..+
T Consensus 111 ~~~eL~~lA~~~gv~l~fEasV~ggiPii~~l~~~l 146 (426)
T PRK06349 111 HGAELFAAAEEKGVDLYFEAAVAGGIPIIKALREGL 146 (426)
T ss_pred HHHHHHHHHHHcCCcEEEEEEeeccCchHHHHHhhc
Confidence 358899999999999999999988877665555433
No 399
>KOG0369|consensus
Probab=35.66 E-value=37 Score=27.34 Aligned_cols=31 Identities=26% Similarity=0.553 Sum_probs=27.5
Q ss_pred eeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 9 GAFDPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 9 G~id~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
|-|...+|..+.+++||.++-.-|||||...
T Consensus 168 gPitt~~EA~eF~k~yG~PvI~KAAyGGGGR 198 (1176)
T KOG0369|consen 168 GPITTVEEALEFVKEYGLPVIIKAAYGGGGR 198 (1176)
T ss_pred CCcccHHHHHHHHHhcCCcEEEeecccCCCc
Confidence 5677789999999999999999999998764
No 400
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=35.05 E-value=46 Score=17.15 Aligned_cols=23 Identities=9% Similarity=-0.029 Sum_probs=15.5
Q ss_pred eeCHHHHHHHHHHcCc--EEEeccc
Q psy14030 11 FDPIPAIADICAEYDM--WLHVDAA 33 (63)
Q Consensus 11 id~i~~i~~i~~~~~~--~~HvDaa 33 (63)
...++++.+.+++.|+ ..-.|..
T Consensus 14 ~~~~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 14 ALSPEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred cCCHHHHHHHHHHcCCCEEEEeeCC
Confidence 3467888888888764 4456664
No 401
>PRK06148 hypothetical protein; Provisional
Probab=34.63 E-value=46 Score=26.65 Aligned_cols=31 Identities=10% Similarity=-0.086 Sum_probs=26.4
Q ss_pred eeeeC----HHHHHHHHHHcCcEEEecccccceee
Q psy14030 9 GAFDP----IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 9 G~id~----i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
|.+-+ ++++.++|+++|+.+-+|=+|.||..
T Consensus 798 G~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGR 832 (1013)
T PRK06148 798 GQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGR 832 (1013)
T ss_pred CCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCC
Confidence 45555 89999999999999999999988754
No 402
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=34.54 E-value=28 Score=26.79 Aligned_cols=27 Identities=7% Similarity=0.193 Sum_probs=23.8
Q ss_pred eeeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030 9 GAFDPIPAIADICAEYDMWLHVDAAWG 35 (63)
Q Consensus 9 G~id~i~~i~~i~~~~~~~~HvDaa~g 35 (63)
|.+++++++++.|++.|+.|-+|.++-
T Consensus 242 g~~~efk~LV~~~H~~GI~VIlDvV~N 268 (688)
T TIGR02100 242 GQVAEFKTMVRALHDAGIEVILDVVYN 268 (688)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECcC
Confidence 578889999999999999999999763
No 403
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=34.14 E-value=33 Score=26.43 Aligned_cols=36 Identities=14% Similarity=0.051 Sum_probs=31.3
Q ss_pred ccccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
+.++..|+-++++.+++.|.+.|+-+-+|.+++=|.
T Consensus 205 Ap~sryGtPedfk~fVD~aH~~GIgViLD~V~~HF~ 240 (628)
T COG0296 205 APTSRYGTPEDFKALVDAAHQAGIGVILDWVPNHFP 240 (628)
T ss_pred cccccCCCHHHHHHHHHHHHHcCCEEEEEecCCcCC
Confidence 457778999999999999999999999999877543
No 404
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=34.07 E-value=60 Score=23.52 Aligned_cols=48 Identities=19% Similarity=0.133 Sum_probs=25.5
Q ss_pred HHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCCC
Q psy14030 14 IPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTPC 63 (63)
Q Consensus 14 i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h~ 63 (63)
+....+.|+++|+.+ |+..|....-+.--+..+..-=..|+|+.|.||
T Consensus 230 vr~~vrra~erGV~f--D~ghG~asfsf~vAr~aia~GllP~~ISSDlh~ 277 (386)
T COG3964 230 VRAEVRRARERGVIF--DAGHGRASFSFNVARRAIANGLLPDIISSDLHT 277 (386)
T ss_pred HHHHHHHHHhcceEE--EccCCcceeeHHHHHHHHhcCCCcceeecccee
Confidence 344455566666655 666665443222222222222246889988886
No 405
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=33.10 E-value=53 Score=24.11 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=17.6
Q ss_pred cceeeeeCHHHHHHHHHHcCcEEEe
Q psy14030 6 TVLGAFDPIPAIADICAEYDMWLHV 30 (63)
Q Consensus 6 t~tG~id~i~~i~~i~~~~~~~~Hv 30 (63)
+..|.++++++|.+++++.|..+-+
T Consensus 207 n~~G~~ed~~~i~~~~h~~gal~~~ 231 (429)
T PF02347_consen 207 NTFGVFEDIKEIADIAHAAGALVIV 231 (429)
T ss_dssp -TTSB--THHHHHHHHHHTT-EEEE
T ss_pred CCCceEeeHHHHHHHHHHcCCEEEE
Confidence 3568999999999999999865544
No 406
>KOG1405|consensus
Probab=32.61 E-value=37 Score=25.18 Aligned_cols=36 Identities=22% Similarity=0.220 Sum_probs=28.8
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
|.-..++-|=+..+.++++++++-+-||-+|.|...
T Consensus 284 GGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGa 319 (484)
T KOG1405|consen 284 GGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGA 319 (484)
T ss_pred CCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCc
Confidence 444555666789999999999999999999976544
No 407
>PLN02784 alpha-amylase
Probab=31.52 E-value=36 Score=27.38 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=26.1
Q ss_pred ccceeeeeCHHHHHHHHHHcCcEEEecccc
Q psy14030 5 TTVLGAFDPIPAIADICAEYDMWLHVDAAW 34 (63)
Q Consensus 5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~ 34 (63)
++..|+.++++++.+.++++|+.+-+|.+.
T Consensus 561 ds~yGT~~ELk~LI~a~H~~GIkVIlDiVi 590 (894)
T PLN02784 561 NSRYGTIDELKDLVKSFHEVGIKVLGDAVL 590 (894)
T ss_pred CcCcCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 356788999999999999999999999764
No 408
>PRK03705 glycogen debranching enzyme; Provisional
Probab=30.55 E-value=40 Score=25.84 Aligned_cols=26 Identities=12% Similarity=0.146 Sum_probs=21.8
Q ss_pred eeeeCHHHHHHHHHHcCcEEEecccc
Q psy14030 9 GAFDPIPAIADICAEYDMWLHVDAAW 34 (63)
Q Consensus 9 G~id~i~~i~~i~~~~~~~~HvDaa~ 34 (63)
..+++++++++.|.+.|+.+-.|.++
T Consensus 239 ~~~~efk~LV~~~H~~GI~VIlDvV~ 264 (658)
T PRK03705 239 TALDEFRDAVKALHKAGIEVILDVVF 264 (658)
T ss_pred chHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 34667888888888999999999876
No 409
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=29.98 E-value=42 Score=16.83 Aligned_cols=21 Identities=10% Similarity=0.186 Sum_probs=15.2
Q ss_pred eeeeeCHHHHHHHHHHcCcEE
Q psy14030 8 LGAFDPIPAIADICAEYDMWL 28 (63)
Q Consensus 8 tG~id~i~~i~~i~~~~~~~~ 28 (63)
.|.++.++++.+..++.|+|+
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~i 35 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRI 35 (48)
T ss_pred cCChhhHHHHHHHHHHcCccc
Confidence 466777777777777777776
No 410
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=29.60 E-value=66 Score=20.89 Aligned_cols=20 Identities=10% Similarity=0.200 Sum_probs=15.4
Q ss_pred HHHHHHHHHHcCc--EEEeccc
Q psy14030 14 IPAIADICAEYDM--WLHVDAA 33 (63)
Q Consensus 14 i~~i~~i~~~~~~--~~HvDaa 33 (63)
++++.++++++|+ -+|++..
T Consensus 127 l~~~~~~A~~~g~~v~~H~~e~ 148 (263)
T cd01305 127 LEDILELLRRRGKLFAIHASET 148 (263)
T ss_pred HHHHHHHHHHCCCeeEEecCCC
Confidence 8999999999875 4566543
No 411
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=29.49 E-value=18 Score=25.66 Aligned_cols=32 Identities=16% Similarity=-0.105 Sum_probs=23.4
Q ss_pred CccccceeeeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030 2 FPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWG 35 (63)
Q Consensus 2 t~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~g 35 (63)
+-..|.||++.|++++.... ++..+-||+.-.
T Consensus 134 vhnETSTGv~npv~~i~~~~--~~~lliVDavSs 165 (374)
T TIGR01365 134 TWNGTTSGVRVPNGDFIPAD--REGLTICDATSA 165 (374)
T ss_pred ecCCCchheecccccccccc--CCCcEEEEccch
Confidence 34568999999998766433 477888998644
No 412
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=29.46 E-value=47 Score=16.45 Aligned_cols=19 Identities=5% Similarity=-0.006 Sum_probs=14.8
Q ss_pred eeCHHHHHHHHHHcCcEEE
Q psy14030 11 FDPIPAIADICAEYDMWLH 29 (63)
Q Consensus 11 id~i~~i~~i~~~~~~~~H 29 (63)
..+.+++.++++++|..|-
T Consensus 26 ~~~~~e~~~lA~~~Gy~ft 44 (49)
T PF07862_consen 26 CQNPEEVVALAREAGYDFT 44 (49)
T ss_pred cCCHHHHHHHHHHcCCCCC
Confidence 4578899999999887653
No 413
>PRK07046 aminotransferase; Validated
Probab=29.13 E-value=58 Score=23.50 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=20.2
Q ss_pred HHHHHHHHHHcCcEEEeccccc
Q psy14030 14 IPAIADICAEYDMWLHVDAAWG 35 (63)
Q Consensus 14 i~~i~~i~~~~~~~~HvDaa~g 35 (63)
+++++++|+++|+.+-.|=++.
T Consensus 241 l~~lr~lc~~~g~llI~DEV~t 262 (453)
T PRK07046 241 HEALRELTRRYGTLLVIDETHT 262 (453)
T ss_pred HHHHHHHHHHhCCEEEEEcccc
Confidence 7999999999999999998874
No 414
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=29.07 E-value=83 Score=21.43 Aligned_cols=42 Identities=14% Similarity=0.307 Sum_probs=28.5
Q ss_pred eCHHHHHHHHHHc------CcEEEecccccceeeecccchhhhCCCCCCcee
Q psy14030 12 DPIPAIADICAEY------DMWLHVDAAWGGGALVSRKHRHLLTGIERPQNR 57 (63)
Q Consensus 12 d~i~~i~~i~~~~------~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi 57 (63)
|+++-|.+-|.+. |..+|.+ +|. .-.+.....++.++++||-
T Consensus 171 dd~~~ik~~C~kS~ApFP~Gc~f~S~---~Gl-~sfehP~nk~k~~prvDse 218 (228)
T PF12481_consen 171 DDLELIKEGCGKSFAPFPAGCFFSSE---GGL-RSFEHPKNKVKAMPRVDSE 218 (228)
T ss_pred CCHHHHHhhhhhccCCCCcceEEEec---Cce-EeecCCcccccccccccCc
Confidence 8888888888864 6778877 332 2333334567788888883
No 415
>PRK06270 homoserine dehydrogenase; Provisional
Probab=28.77 E-value=54 Score=22.74 Aligned_cols=35 Identities=11% Similarity=0.253 Sum_probs=27.6
Q ss_pred HHHHHHHHHHcCcEEEecccccceeeecccchhhh
Q psy14030 14 IPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLL 48 (63)
Q Consensus 14 i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~ 48 (63)
.++|.+++++++..+-..++.+++..+....+..+
T Consensus 133 ~~eL~~~A~~~g~~~~~ea~v~~glPii~~l~~~l 167 (341)
T PRK06270 133 YKELKELAKKNGVRFRYEATVGGAMPIINLAKETL 167 (341)
T ss_pred HHHHHHHHHHcCCEEEEeeeeeechhHHHHHHhhc
Confidence 57899999999998888898888777666555443
No 416
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=28.54 E-value=48 Score=19.82 Aligned_cols=18 Identities=22% Similarity=0.704 Sum_probs=11.8
Q ss_pred eeCHHHHHHHHHHcCcEE
Q psy14030 11 FDPIPAIADICAEYDMWL 28 (63)
Q Consensus 11 id~i~~i~~i~~~~~~~~ 28 (63)
+++.+++.++|+++++++
T Consensus 91 ~~~p~~l~e~a~~~~ipl 108 (127)
T PF02603_consen 91 LEPPPELIELAEKYNIPL 108 (127)
T ss_dssp T---HHHHHHHHHCT--E
T ss_pred CCCCHHHHHHHHHhCCcE
Confidence 578899999999999876
No 417
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=27.98 E-value=58 Score=19.82 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=15.3
Q ss_pred eeCHHHHHHHHHHcCcEE
Q psy14030 11 FDPIPAIADICAEYDMWL 28 (63)
Q Consensus 11 id~i~~i~~i~~~~~~~~ 28 (63)
-|-+.|+.+.|++.|+.+
T Consensus 43 ~Dllge~v~a~h~~Girv 60 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRV 60 (132)
T ss_pred cCHHHHHHHHHHHCCCEE
Confidence 578899999999998754
No 418
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=27.05 E-value=53 Score=18.55 Aligned_cols=22 Identities=14% Similarity=0.427 Sum_probs=13.9
Q ss_pred ceeeeeCHHHHHHHHHHcCcEE
Q psy14030 7 VLGAFDPIPAIADICAEYDMWL 28 (63)
Q Consensus 7 ~tG~id~i~~i~~i~~~~~~~~ 28 (63)
-||...|=+++.++++++++.+
T Consensus 67 ltg~~~~~~~v~~la~~~~i~v 88 (105)
T PF07085_consen 67 LTGGLEPSEEVLELAKELGIPV 88 (105)
T ss_dssp EETT----HHHHHHHHHHT-EE
T ss_pred EeCCCCCCHHHHHHHHHCCCEE
Confidence 3677888999999999998654
No 419
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=27.03 E-value=84 Score=25.44 Aligned_cols=27 Identities=15% Similarity=0.079 Sum_probs=23.0
Q ss_pred cceeeeeCHHHHHHHHHHcCcEEEecc
Q psy14030 6 TVLGAFDPIPAIADICAEYDMWLHVDA 32 (63)
Q Consensus 6 t~tG~id~i~~i~~i~~~~~~~~HvDa 32 (63)
+..|.+.|+++|.+++++.|..+-+++
T Consensus 204 n~~G~ied~~~i~~~~h~~gal~~~~a 230 (939)
T TIGR00461 204 ATDGSILDYKQLIDALHSHKSLVSVAA 230 (939)
T ss_pred CCCeEEecHHHHHHHHHHcCCEEEEEe
Confidence 567999999999999999887777655
No 420
>PRK14057 epimerase; Provisional
Probab=26.88 E-value=59 Score=22.24 Aligned_cols=26 Identities=15% Similarity=0.051 Sum_probs=16.3
Q ss_pred HHHHHHHHHHcC-cEEEecccccceee
Q psy14030 14 IPAIADICAEYD-MWLHVDAAWGGGAL 39 (63)
Q Consensus 14 i~~i~~i~~~~~-~~~HvDaa~gg~~~ 39 (63)
+++-.+.+++.+ -|+|+|.-=|-|..
T Consensus 34 L~~el~~l~~~g~d~lHiDVMDG~FVP 60 (254)
T PRK14057 34 LHRYLQQLEALNQPLLHLDLMDGQFCP 60 (254)
T ss_pred HHHHHHHHHHCCCCEEEEeccCCccCC
Confidence 444444444545 49999998776654
No 421
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=26.19 E-value=43 Score=24.34 Aligned_cols=29 Identities=17% Similarity=0.309 Sum_probs=23.4
Q ss_pred eeeCHHHHHHHHHHc--CcEEEeccccccee
Q psy14030 10 AFDPIPAIADICAEY--DMWLHVDAAWGGGA 38 (63)
Q Consensus 10 ~id~i~~i~~i~~~~--~~~~HvDaa~gg~~ 38 (63)
.|++|+++.+..|+- ++-+-||-+||-|.
T Consensus 184 ~I~eI~~~i~~vk~inpn~ivFVDNCYGEFv 214 (416)
T COG4100 184 SIAEIEEMITFVKEINPNVIVFVDNCYGEFV 214 (416)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEEeccchhhh
Confidence 467788888888874 68899999999765
No 422
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=26.02 E-value=37 Score=22.53 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=16.2
Q ss_pred HHHHHHHHHHcC-cEEEecccccceee
Q psy14030 14 IPAIADICAEYD-MWLHVDAAWGGGAL 39 (63)
Q Consensus 14 i~~i~~i~~~~~-~~~HvDaa~gg~~~ 39 (63)
+++-.+.+++.| -|+|+|.-=|-|.-
T Consensus 18 l~~~i~~l~~~g~d~lHiDimDG~FVP 44 (223)
T PRK08745 18 LGEEVDNVLKAGADWVHFDVMDNHYVP 44 (223)
T ss_pred HHHHHHHHHHcCCCEEEEecccCccCC
Confidence 334444444555 49999987776653
No 423
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=25.65 E-value=45 Score=24.97 Aligned_cols=26 Identities=8% Similarity=0.193 Sum_probs=22.3
Q ss_pred eeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030 10 AFDPIPAIADICAEYDMWLHVDAAWG 35 (63)
Q Consensus 10 ~id~i~~i~~i~~~~~~~~HvDaa~g 35 (63)
.+++++++++.|.+.|+.|-+|.++-
T Consensus 227 ~~~efk~lV~~~H~~Gi~VilDvV~N 252 (605)
T TIGR02104 227 RIRELKQMIQALHENGIRVIMDVVYN 252 (605)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEcC
Confidence 36789999999999999999998773
No 424
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=25.34 E-value=40 Score=19.06 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=17.3
Q ss_pred eeeeeCHHHHHHHHHHcCc--EEEe
Q psy14030 8 LGAFDPIPAIADICAEYDM--WLHV 30 (63)
Q Consensus 8 tG~id~i~~i~~i~~~~~~--~~Hv 30 (63)
.|.|.+..+++++|+++|+ ++|.
T Consensus 29 ~GGit~~~~i~~~A~~~gi~~~~h~ 53 (111)
T PF13378_consen 29 CGGITEALRIAALAEAHGIPVMPHS 53 (111)
T ss_dssp HTSHHHHHHHHHHHHHTT-EEEEBS
T ss_pred cCCHHHHHHHHHHHHHhCCCEEecC
Confidence 4667788899999999874 5665
No 425
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=25.21 E-value=86 Score=19.96 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=18.8
Q ss_pred eeeeCHHHHHHHHHHcCcEEEeccc
Q psy14030 9 GAFDPIPAIADICAEYDMWLHVDAA 33 (63)
Q Consensus 9 G~id~i~~i~~i~~~~~~~~HvDaa 33 (63)
..++-++++.+.|+++|+.+-+|--
T Consensus 59 ~~~~~ld~~v~~a~~~gi~vild~h 83 (281)
T PF00150_consen 59 TYLARLDRIVDAAQAYGIYVILDLH 83 (281)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4567789999999999988766653
No 426
>PRK14706 glycogen branching enzyme; Provisional
Probab=25.12 E-value=55 Score=25.03 Aligned_cols=32 Identities=16% Similarity=0.115 Sum_probs=26.9
Q ss_pred ccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030 5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGG 36 (63)
Q Consensus 5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg 36 (63)
+...|+.++++++++.|.+.|+.+-.|.++.=
T Consensus 210 ~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH 241 (639)
T PRK14706 210 TSRLGTPEDFKYLVNHLHGLGIGVILDWVPGH 241 (639)
T ss_pred ccccCCHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 44567889999999999999999999987653
No 427
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=25.11 E-value=72 Score=22.47 Aligned_cols=35 Identities=17% Similarity=0.035 Sum_probs=29.3
Q ss_pred CccccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030 2 FPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGG 36 (63)
Q Consensus 2 t~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg 36 (63)
+.|..+-+.+.|..++++.++++++.+|.+-..||
T Consensus 244 ~~g~~~~~~~~pNr~L~~~L~~~g~~~~yre~~Gg 278 (299)
T COG2382 244 TTGGEEGDFLRPNRALAAQLEKKGIPYYYREYPGG 278 (299)
T ss_pred ecCCccccccchhHHHHHHHHhcCCcceeeecCCC
Confidence 45677788899999999999999998887776665
No 428
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=24.89 E-value=25 Score=20.35 Aligned_cols=25 Identities=12% Similarity=0.250 Sum_probs=18.5
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEE
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWL 28 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~ 28 (63)
|+-..-+.|.+.+|-+++++.++.+
T Consensus 44 G~IP~~V~~sl~kL~~La~~N~v~f 68 (82)
T PF11020_consen 44 GQIPEKVMDSLSKLYKLAKENNVSF 68 (82)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCH
Confidence 4444455677889999999988765
No 429
>KOG3843|consensus
Probab=24.67 E-value=42 Score=24.11 Aligned_cols=27 Identities=41% Similarity=0.491 Sum_probs=23.3
Q ss_pred eeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030 10 AFDPIPAIADICAEYDMWLHVDAAWGG 36 (63)
Q Consensus 10 ~id~i~~i~~i~~~~~~~~HvDaa~gg 36 (63)
+-|++++|+.+|..|+++--|.-|||.
T Consensus 172 ~pd~leaiaaica~~diphivnnaygl 198 (432)
T KOG3843|consen 172 SPDNLEAIAAICAAHDIPHIVNNAYGL 198 (432)
T ss_pred CCchHHHHHHHHHccCchhhhcccccc
Confidence 368899999999999998778888875
No 430
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=24.53 E-value=60 Score=20.97 Aligned_cols=15 Identities=13% Similarity=0.558 Sum_probs=12.5
Q ss_pred CHHHHHHHHHHcCcE
Q psy14030 13 PIPAIADICAEYDMW 27 (63)
Q Consensus 13 ~i~~i~~i~~~~~~~ 27 (63)
|++.+.++|++++.|
T Consensus 54 Didq~i~lC~~~~Ly 68 (196)
T PF12816_consen 54 DIDQVIKLCKKHGLY 68 (196)
T ss_pred CHHHHHHHHHHCCCC
Confidence 688999999998643
No 431
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=24.42 E-value=1.1e+02 Score=15.85 Aligned_cols=28 Identities=14% Similarity=0.176 Sum_probs=20.5
Q ss_pred eCHHHHHHHHHHcC-cEEEecccccceee
Q psy14030 12 DPIPAIADICAEYD-MWLHVDAAWGGGAL 39 (63)
Q Consensus 12 d~i~~i~~i~~~~~-~~~HvDaa~gg~~~ 39 (63)
+.+..|++++++|+ -.+++=.-|...+.
T Consensus 24 ~~l~~la~ia~~yg~~~irlT~~Q~l~l~ 52 (69)
T PF03460_consen 24 EQLRALAEIAEKYGDGEIRLTTRQNLQLR 52 (69)
T ss_dssp HHHHHHHHHHHHHSTSEEEEETTSCEEEE
T ss_pred HHHHHHHHHHHHhCCCeEEECCCCeEEEe
Confidence 45888999999998 66776666664444
No 432
>PLN03244 alpha-amylase; Provisional
Probab=24.32 E-value=60 Score=26.11 Aligned_cols=33 Identities=12% Similarity=0.225 Sum_probs=28.4
Q ss_pred ccccceeeeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030 3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWG 35 (63)
Q Consensus 3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~g 35 (63)
+-+...|+.++++++++.|.+.|+.|-+|.++.
T Consensus 432 ApssRYGTPeDLK~LVD~aH~~GI~VILDvV~N 464 (872)
T PLN03244 432 AASSRYGTPDDFKRLVDEAHGLGLLVFLDIVHS 464 (872)
T ss_pred ccCcccCCHHHHHHHHHHHHHCCCEEEEEecCc
Confidence 345677889999999999999999999998764
No 433
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=24.24 E-value=39 Score=19.89 Aligned_cols=29 Identities=31% Similarity=0.342 Sum_probs=22.3
Q ss_pred eeeCHHHHHHHHHHcCcEEEecccccceeeecc
Q psy14030 10 AFDPIPAIADICAEYDMWLHVDAAWGGGALVSR 42 (63)
Q Consensus 10 ~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~ 42 (63)
+.-++++|.+++++. -+|+.++|...++.
T Consensus 59 ~yl~~e~I~~ia~~~----g~~~i~pGyg~lse 87 (110)
T PF00289_consen 59 SYLNIEAIIDIARKE----GADAIHPGYGFLSE 87 (110)
T ss_dssp TTTSHHHHHHHHHHT----TESEEESTSSTTTT
T ss_pred hhccHHHHhhHhhhh----cCcccccccchhHH
Confidence 456799999999998 57888888666543
No 434
>PRK08374 homoserine dehydrogenase; Provisional
Probab=24.10 E-value=1.2e+02 Score=21.16 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHcCcEEEecccccceeeecccchhhh
Q psy14030 13 PIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLL 48 (63)
Q Consensus 13 ~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~ 48 (63)
..+++.+++++++..+...++.++...+....+..+
T Consensus 129 ~~~el~~la~~~~~~~~~ea~v~~GiPii~~l~~~l 164 (336)
T PRK08374 129 HYDELLDLANERNLPYLFEATVMAGTPIIGLLRENL 164 (336)
T ss_pred CHHHHHHHHHHcCCeEEEeccccccCCchHHHHhhc
Confidence 567999999999999999998887777665555443
No 435
>KOG1358|consensus
Probab=24.02 E-value=75 Score=23.72 Aligned_cols=33 Identities=24% Similarity=0.454 Sum_probs=28.2
Q ss_pred ceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 7 VLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 7 ~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
++|-+=|+.+|.++.+||..++-+|=.|....+
T Consensus 245 N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~l 277 (467)
T KOG1358|consen 245 NTGDICPLPEIVKLKNKYKFRVILDESLSFGVL 277 (467)
T ss_pred CCCcccccHHHHHHHhhheEEEEEecccccccc
Confidence 578899999999999999999999998764443
No 436
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=24.00 E-value=46 Score=18.62 Aligned_cols=21 Identities=10% Similarity=0.192 Sum_probs=16.6
Q ss_pred eeeCHHHHHHHHHHcCcEEEe
Q psy14030 10 AFDPIPAIADICAEYDMWLHV 30 (63)
Q Consensus 10 ~id~i~~i~~i~~~~~~~~Hv 30 (63)
..++.++|.+++++++..+.|
T Consensus 98 ~~~~~~~l~~~a~~~~~~~~V 118 (120)
T PF01408_consen 98 TLEEAEELVEAAKEKGVKVMV 118 (120)
T ss_dssp SHHHHHHHHHHHHHHTSCEEE
T ss_pred CHHHHHHHHHHHHHhCCEEEE
Confidence 466788899999998877765
No 437
>PF01619 Pro_dh: Proline dehydrogenase; InterPro: IPR002872 The proline oxidase/dehydrogenase 1.5.99.8 from EC is responsible for the first step in the conversion of proline to glutamate for use as a carbon and nitrogen source. The enzyme requires FAD as a cofactor, and is induced by proline.; GO: 0004657 proline dehydrogenase activity, 0006537 glutamate biosynthetic process, 0006562 proline catabolic process, 0055114 oxidation-reduction process; PDB: 2G37_A 2EKG_B 4F9I_B 3HAZ_A 2FZM_A 3E2Q_A 3E2S_A 2FZN_A 1K87_A 1TJ2_A ....
Probab=23.93 E-value=88 Score=21.40 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=16.3
Q ss_pred eeCHHHHHHHHHHcCcEEEecccc
Q psy14030 11 FDPIPAIADICAEYDMWLHVDAAW 34 (63)
Q Consensus 11 id~i~~i~~i~~~~~~~~HvDaa~ 34 (63)
.+.+.+|++.++++++.+-+|+=+
T Consensus 91 ~~~l~~i~~~A~~~~v~v~iDaE~ 114 (313)
T PF01619_consen 91 LERLRRICERAKEHGVFVLIDAEE 114 (313)
T ss_dssp HHHHHHHHHHHHHTTEEEEE----
T ss_pred HHHHHHHHHHhhcCCcEEEEcCCC
Confidence 345677888888999999999943
No 438
>KOG1404|consensus
Probab=23.76 E-value=84 Score=23.35 Aligned_cols=32 Identities=13% Similarity=0.073 Sum_probs=27.5
Q ss_pred eeeeC----HHHHHHHHHHcCcEEEecccccceeee
Q psy14030 9 GAFDP----IPAIADICAEYDMWLHVDAAWGGGALV 40 (63)
Q Consensus 9 G~id~----i~~i~~i~~~~~~~~HvDaa~gg~~~~ 40 (63)
|.+++ ++++.++++++|..+-.|=+|.||...
T Consensus 226 G~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRt 261 (442)
T KOG1404|consen 226 GIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRT 261 (442)
T ss_pred ccccCCchHHHHHHHHHHHcCCEEEehhhhhccccc
Confidence 56666 788999999999999999999998763
No 439
>KOG0471|consensus
Probab=23.71 E-value=52 Score=24.58 Aligned_cols=29 Identities=7% Similarity=0.050 Sum_probs=25.4
Q ss_pred cceeeeeCHHHHHHHHHHcCcEEEecccc
Q psy14030 6 TVLGAFDPIPAIADICAEYDMWLHVDAAW 34 (63)
Q Consensus 6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~ 34 (63)
..-|+.+++.++..-+.+.++++-+|.+-
T Consensus 82 p~fGt~edf~~Li~~~h~~gi~ii~D~vi 110 (545)
T KOG0471|consen 82 PRFGTEEDFKELILAMHKLGIKIIADLVI 110 (545)
T ss_pred ccccHHHHHHHHHHHHhhcceEEEEeecc
Confidence 45688999999999999999999999853
No 440
>PRK14705 glycogen branching enzyme; Provisional
Probab=23.30 E-value=61 Score=26.94 Aligned_cols=34 Identities=15% Similarity=0.001 Sum_probs=29.3
Q ss_pred cccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~ 37 (63)
-+...|+.++++++++.|.+.|+.+-+|-++.-+
T Consensus 807 p~~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~ 840 (1224)
T PRK14705 807 PTSRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHF 840 (1224)
T ss_pred cCcccCCHHHHHHHHHHHHHCCCEEEEEeccccC
Confidence 4667888999999999999999999999877643
No 441
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=23.24 E-value=60 Score=22.58 Aligned_cols=19 Identities=26% Similarity=0.534 Sum_probs=14.7
Q ss_pred eeeCHHHHHHHHHHcCcEE
Q psy14030 10 AFDPIPAIADICAEYDMWL 28 (63)
Q Consensus 10 ~id~i~~i~~i~~~~~~~~ 28 (63)
--|-++|+++.|+++|+.+
T Consensus 136 krDiv~El~~A~rk~Glk~ 154 (346)
T PF01120_consen 136 KRDIVGELADACRKYGLKF 154 (346)
T ss_dssp TS-HHHHHHHHHHHTT-EE
T ss_pred CCCHHHHHHHHHHHcCCeE
Confidence 3688999999999998765
No 442
>PF04025 DUF370: Domain of unknown function (DUF370); InterPro: IPR007169 This is a bacterial family of unknown function.
Probab=22.70 E-value=98 Score=17.36 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHcCcEEEecccccce
Q psy14030 13 PIPAIADICAEYDMWLHVDAAWGGG 37 (63)
Q Consensus 13 ~i~~i~~i~~~~~~~~HvDaa~gg~ 37 (63)
|++++.+.+++.|-. +|++||.-
T Consensus 25 p~Krl~~~ak~~~~l--IdaT~Grk 47 (73)
T PF04025_consen 25 PIKRLIQEAKEEGKL--IDATYGRK 47 (73)
T ss_pred hHHHHHHHHHHcCcE--EEeeCCCc
Confidence 688999999887654 68888863
No 443
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=22.18 E-value=1.2e+02 Score=21.56 Aligned_cols=36 Identities=22% Similarity=0.328 Sum_probs=29.2
Q ss_pred HHHHHHHHHHcCcEEEecccccceeeecccchhhhC
Q psy14030 14 IPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLT 49 (63)
Q Consensus 14 i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~ 49 (63)
..||.+++++.+..+--.|+-||...+..-.+..+.
T Consensus 121 ~~el~~~A~~~g~~l~yEAtV~gGiPiI~~lr~~l~ 156 (333)
T COG0460 121 YHELREAAEKNGVKLLYEATVGGGIPIIKLLRELLA 156 (333)
T ss_pred HHHHHHHHHHhCCeEEEEeeeccCcchHHHHHhhcc
Confidence 568999999999999999999998887666665443
No 444
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=22.16 E-value=98 Score=14.41 Aligned_cols=15 Identities=7% Similarity=0.091 Sum_probs=11.0
Q ss_pred HHHHHHHHHHcCcEE
Q psy14030 14 IPAIADICAEYDMWL 28 (63)
Q Consensus 14 i~~i~~i~~~~~~~~ 28 (63)
+.++.++|+++|+..
T Consensus 6 v~eLk~~l~~~gL~~ 20 (35)
T PF02037_consen 6 VAELKEELKERGLST 20 (35)
T ss_dssp HHHHHHHHHHTTS-S
T ss_pred HHHHHHHHHHCCCCC
Confidence 578889999887653
No 445
>PRK05985 cytosine deaminase; Provisional
Probab=22.04 E-value=70 Score=22.13 Aligned_cols=22 Identities=5% Similarity=0.175 Sum_probs=16.6
Q ss_pred eCHHHHHHHHHHcCc--EEEeccc
Q psy14030 12 DPIPAIADICAEYDM--WLHVDAA 33 (63)
Q Consensus 12 d~i~~i~~i~~~~~~--~~HvDaa 33 (63)
+.+.++.+++++++. -+|++..
T Consensus 191 ~~l~~~~~~A~~~g~~i~~Hv~e~ 214 (391)
T PRK05985 191 GQLDIVFGLAERHGVGIDIHLHEP 214 (391)
T ss_pred HHHHHHHHHHHHhCCCcEEeeCCC
Confidence 447888899999984 5598764
No 446
>KOG1412|consensus
Probab=21.45 E-value=1e+02 Score=22.51 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=26.1
Q ss_pred ccceeeeeC----HHHHHHHHHHcCcEEEecccccceee
Q psy14030 5 TTVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 5 tt~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
-+.|| +|| ..+|+++.++++...--|.||=||+.
T Consensus 188 hNPTG-mDPT~EQW~qia~vik~k~lf~fFDiAYQGfAS 225 (410)
T KOG1412|consen 188 HNPTG-MDPTREQWKQIADVIKSKNLFPFFDIAYQGFAS 225 (410)
T ss_pred cCCCC-CCCCHHHHHHHHHHHHhcCceeeeehhhccccc
Confidence 35566 676 45688888888888888999888764
No 447
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=21.09 E-value=1.1e+02 Score=21.09 Aligned_cols=31 Identities=23% Similarity=0.175 Sum_probs=25.2
Q ss_pred cceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030 6 TVLGAFDPIPAIADICAEYDMWLHVDAAWGG 36 (63)
Q Consensus 6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~gg 36 (63)
.-.|..-.-+++++..+++++-+-+||++--
T Consensus 47 ~~~~G~l~~e~l~~~l~e~~i~llIDATHPy 77 (257)
T COG2099 47 VRVGGFLGAEGLAAFLREEGIDLLIDATHPY 77 (257)
T ss_pred eeecCcCCHHHHHHHHHHcCCCEEEECCChH
Confidence 3445566789999999999999999998653
No 448
>PLN02452 phosphoserine transaminase
Probab=21.08 E-value=38 Score=23.86 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=22.4
Q ss_pred ccccceee-eeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 3 PGTTVLGA-FDPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 3 ~Gtt~tG~-id~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
--.|.+|+ +.|++++.+ +.+-||+++.....
T Consensus 153 hnETstGv~~~~~~~i~~------~~lvVDa~Ss~g~~ 184 (365)
T PLN02452 153 ANETIHGVEFKDYPDVGN------VPLVADMSSNFLSK 184 (365)
T ss_pred CCCCCCcEecCcccccCC------CeEEEECCccccCc
Confidence 35688899 588887753 67889998765444
No 449
>COG0011 Uncharacterized conserved protein [Function unknown]
Probab=21.06 E-value=52 Score=19.54 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=17.5
Q ss_pred CccccceeeeeCHHHHHHHHHHc
Q psy14030 2 FPGTTVLGAFDPIPAIADICAEY 24 (63)
Q Consensus 2 t~Gtt~tG~id~i~~i~~i~~~~ 24 (63)
-+||+-.|.+|++-++.+.+.+.
T Consensus 41 pm~T~iEg~~del~~~ik~~~Ea 63 (100)
T COG0011 41 PMGTVIEGELDELMEAVKEAHEA 63 (100)
T ss_pred CcceEEEecHHHHHHHHHHHHHH
Confidence 37899999777777777777664
No 450
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=21.04 E-value=77 Score=21.37 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=22.4
Q ss_pred eeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030 8 LGAFDPIPAIADICAEYDMWLHVDAAWGG 36 (63)
Q Consensus 8 tG~id~i~~i~~i~~~~~~~~HvDaa~gg 36 (63)
.|.+|. +++.+.+++.++.+.+|++.-.
T Consensus 49 ~g~l~~-~~l~~~l~~~~i~~VIDAtHPf 76 (256)
T TIGR00715 49 TGALDP-QELREFLKRHSIDILVDATHPF 76 (256)
T ss_pred ECCCCH-HHHHHHHHhcCCCEEEEcCCHH
Confidence 455655 5599999999999999998654
No 451
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=21.01 E-value=75 Score=25.07 Aligned_cols=31 Identities=10% Similarity=0.175 Sum_probs=26.4
Q ss_pred ccceeeeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030 5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWG 35 (63)
Q Consensus 5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~g 35 (63)
+...|+.++++++++.|.+.|+.+-+|.++.
T Consensus 293 ~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~n 323 (758)
T PLN02447 293 SSRSGTPEDLKYLIDKAHSLGLRVLMDVVHS 323 (758)
T ss_pred ccccCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 4456778999999999999999999998764
No 452
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=20.90 E-value=75 Score=25.35 Aligned_cols=31 Identities=16% Similarity=0.171 Sum_probs=26.9
Q ss_pred ccceeeeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030 5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWG 35 (63)
Q Consensus 5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~g 35 (63)
+.+.|..++++++++.++++|+.+-+|.+.-
T Consensus 58 dp~lGt~edf~~Lv~aah~~Gm~vIlDiVpN 88 (825)
T TIGR02401 58 NPELGGEEGLRRLSEAARARGLGLIVDIVPN 88 (825)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 4567889999999999999999999998653
No 453
>PRK08418 chlorohydrolase; Provisional
Probab=20.66 E-value=75 Score=22.42 Aligned_cols=27 Identities=0% Similarity=-0.232 Sum_probs=19.9
Q ss_pred eeeeeCHHHHHHHHHHcCcEEEecccc
Q psy14030 8 LGAFDPIPAIADICAEYDMWLHVDAAW 34 (63)
Q Consensus 8 tG~id~i~~i~~i~~~~~~~~HvDaa~ 34 (63)
+.+-+-++++.++++++++.+|+=.+.
T Consensus 186 t~s~e~l~~~~~~A~~~~~~i~~H~~E 212 (408)
T PRK08418 186 SVHPILAKKALQLAKKENLLVSTHFLE 212 (408)
T ss_pred CCCHHHHHHHHHHHHHcCCeEEEEecC
Confidence 444566889999999998777655543
No 454
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=20.59 E-value=1.2e+02 Score=19.08 Aligned_cols=17 Identities=12% Similarity=0.249 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHcCcEEE
Q psy14030 13 PIPAIADICAEYDMWLH 29 (63)
Q Consensus 13 ~i~~i~~i~~~~~~~~H 29 (63)
++.++.+++++||+.+.
T Consensus 74 ~Ig~l~~lae~~g~~v~ 90 (158)
T PF01976_consen 74 DIGDLKKLAEKYGYKVY 90 (158)
T ss_pred chhHHHHHHHHcCCEEE
Confidence 58899999999987654
No 455
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=20.45 E-value=89 Score=22.35 Aligned_cols=19 Identities=16% Similarity=0.170 Sum_probs=16.4
Q ss_pred eeeCHHHHHHHHHHcCcEE
Q psy14030 10 AFDPIPAIADICAEYDMWL 28 (63)
Q Consensus 10 ~id~i~~i~~i~~~~~~~~ 28 (63)
--|-++|+++.|+++|+.+
T Consensus 126 krDiv~el~~A~rk~Glk~ 144 (384)
T smart00812 126 KRDLVGELADAVRKRGLKF 144 (384)
T ss_pred CcchHHHHHHHHHHcCCeE
Confidence 3588999999999998776
No 456
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=20.13 E-value=79 Score=25.42 Aligned_cols=34 Identities=21% Similarity=0.090 Sum_probs=28.1
Q ss_pred ccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030 5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA 38 (63)
Q Consensus 5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~ 38 (63)
+.+.|..++++++++.++++|+.+-+|.+.--..
T Consensus 62 dp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~ 95 (879)
T PRK14511 62 NPELGGEEGLRRLAAALRAHGMGLILDIVPNHMA 95 (879)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 4566888999999999999999999999765433
No 457
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=20.02 E-value=72 Score=22.71 Aligned_cols=30 Identities=10% Similarity=0.013 Sum_probs=22.0
Q ss_pred eeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030 10 AFDPIPAIADICAEYDMWLHVDAAWGGGAL 39 (63)
Q Consensus 10 ~id~i~~i~~i~~~~~~~~HvDaa~gg~~~ 39 (63)
.++.++++.+.|+++++.+.+|..-..+-.
T Consensus 45 ~~~~~~~l~~~a~~~~~~v~~Disp~~l~~ 74 (357)
T PF05913_consen 45 YLERLKELLKLAKELGMEVIADISPKVLKK 74 (357)
T ss_dssp HHHHHHHHHHHHHHCT-EEEEEE-CCHHHT
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCHHHHHH
Confidence 356688999999999999999997554433
Done!