RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14030
(63 letters)
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 104 bits (261), Expect = 1e-28
Identities = 39/50 (78%), Positives = 43/50 (86%)
Query: 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
GTTV GAFDPI IADIC +Y++WLHVDAAWGGG L+SRKHRH L GIER
Sbjct: 254 GTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIER 303
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 102 bits (257), Expect = 4e-28
Identities = 35/50 (70%), Positives = 42/50 (84%)
Query: 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
GTTVLGAFDP+ AIAD+C + +WLHVDAAWGG L+S+ HRHLL GI+R
Sbjct: 268 GTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQR 317
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 98.5 bits (246), Expect = 1e-26
Identities = 24/50 (48%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
GTT GA D + IAD+ ++DMW+HVD A+GG ++S H+ L G+ER
Sbjct: 267 GTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILS-SHKSRLKGVER 315
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 94.8 bits (236), Expect = 3e-25
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
GTT + AFD + + ICA +WLH+DAA+ G A + + R L GIE
Sbjct: 250 GTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEY 299
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 94.4 bits (235), Expect = 5e-25
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
GTT +FD + + IC E D+WLHVDAA+ G A + + RHLL G+E
Sbjct: 244 GTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEF 293
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 93.6 bits (233), Expect = 7e-25
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
GTT AFD + + ++++W+HVDAA+ G A + ++RHL+ GIE
Sbjct: 243 GTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIES 292
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 68.9 bits (169), Expect = 4e-16
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERP 54
GTT LG D I ++ I E ++++HVDAA+GG + ++ G+
Sbjct: 180 GTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYK 230
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 62.0 bits (150), Expect = 1e-13
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
D I IA IC YD+ ++ A+ + + + L +
Sbjct: 240 TFFPPRNSDDIVEIAKICENYDIPHIINGAYA---IQNNYYLEKLKKAFK 286
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 51.4 bits (123), Expect = 8e-10
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKH-----RHLLTGIERPQNRS 58
G DPIP IA + AE+ + HVDA GG L + +E + S
Sbjct: 248 PGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVS 307
Query: 59 EDTP 62
DT
Sbjct: 308 ADTH 311
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Length = 497
Score = 49.5 bits (118), Expect = 3e-09
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGG 36
G D I + I +Y + LHVD+ G
Sbjct: 215 PNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGS 247
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase,
pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis
thaliana}
Length = 502
Score = 41.6 bits (97), Expect = 2e-06
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 4 GTTVLGAFDPIPAIADICAEY------DMWLHVDAAWGGGAL 39
G+T+ G F+ + + D+ E D +HVDAA GG
Sbjct: 211 GSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIA 252
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14,
autoinhibition, substituted aldamine, lyase; HET: PLP;
1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A*
1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Length = 452
Score = 40.7 bits (95), Expect = 5e-06
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 4 GTTVLGAFDPIPAIADICAE------YDMWLHVDAAWGG 36
G T G ++ + D + D+ +H+DAA GG
Sbjct: 196 GVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGG 234
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order
transition, phosphate-loop, pyridoxal phospha
selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A
{Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Length = 450
Score = 39.2 bits (91), Expect = 1e-05
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 12 DPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
D + +A ICA YD+ V+ A+G L S K HL+ R
Sbjct: 215 DRLEELAVICANYDIPHVVNNAYG---LQSSKCMHLIQQGAR 253
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine,
sepsecs, protein-RNA complex, alternative splicing,
cytoplasm, protein biosynthesis, pyridoxal phosphate,
selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Length = 501
Score = 38.2 bits (88), Expect = 4e-05
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 12 DPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
D + +A ICA YD+ V+ A+G + S K HL+ R
Sbjct: 233 DRLEELAVICANYDIPHIVNNAYG---VQSSKCMHLIQQGAR 271
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A
{Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1
PDB: 1ord_A*
Length = 730
Score = 33.9 bits (77), Expect = 0.001
Identities = 6/38 (15%), Positives = 11/38 (28%)
Query: 9 GAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRH 46
G + ++ D+AW G R+
Sbjct: 294 GTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRN 331
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA
synthase, biotin biosynthesis, 8-AMIN oxonanoate
synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB:
2g6w_A* 1dje_A* 1dj9_A*
Length = 384
Score = 32.9 bits (76), Expect = 0.003
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 13 PIPAIADICAEYDMWLHVDAAWGGGAL 39
P+ I + +++ WL VD A G G +
Sbjct: 186 PLAEIQQVTQQHNGWLMVDDAHGTGVI 212
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston
bacterial structural genomics initiative, BSGI,
transferase; HET: PLP; 2.05A {Escherichia coli} PDB:
3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Length = 423
Score = 32.5 bits (75), Expect = 0.003
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 13 PIPAIADICAEYDMWLHVDAA 33
I AI ++C + HVDA
Sbjct: 181 DIAAIGEMCRARGIIYHVDAT 201
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate,
PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A
{Escherichia coli}
Length = 755
Score = 32.4 bits (73), Expect = 0.004
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 14 IPAIADICAEYDMWLHVDAAWGG 36
D+ + LH D AW G
Sbjct: 330 AKEAQDLLEKTSDRLHFDEAWYG 352
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism,
transferase; HET: PLP; 2.30A {Coxiella burnetii}
Length = 399
Score = 31.8 bits (73), Expect = 0.006
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 13 PIPAIADICAEYDMWLHVDAAWGGGAL 39
+ +I D+ +Y+ + VD + G +
Sbjct: 193 DLKSICDLADKYNALVMVDDSHAVGFI 219
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate
COA ligase, pyridoxal phosphate, COEN transferase,
structural genomics; HET: PLP; 2.00A {Escherichia coli}
SCOP: c.67.1.4
Length = 401
Score = 31.8 bits (73), Expect = 0.006
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 13 PIPAIADICAEYDMWLHVDAAWGGGAL 39
+ + D+ +YD + VD + G +
Sbjct: 195 NLKGVCDLADKYDALVMVDDSHAVGFV 221
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 31.2 bits (71), Expect = 0.009
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 7 VLGAFDPIPAIADICAEYDMWLHVDAAWG 35
G + IA +C+EYD+ L V+ A+
Sbjct: 159 NYGNLPDVKKIAKVCSEYDVPLLVNGAYA 187
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence,
acyltransferase, aminotransferase, pyridoxal PHO
transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB:
3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Length = 409
Score = 31.1 bits (71), Expect = 0.010
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 13 PIPAIADICAEYDMWLHVDAAWGGGAL 39
P+ + +I E+ L VD + G
Sbjct: 204 PLAELVNISKEFGCALLVDESHSLGTH 230
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type
I, acyltransferase, PY phosphate; HET: PLP; 2.30A
{Sphingobacterium multivorum}
Length = 398
Score = 31.0 bits (71), Expect = 0.013
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 13 PIPAIADICAEYDMWLHVDAAWGGGAL 39
+P + I E+D + VD A G +
Sbjct: 191 NLPELTSIANEFDAAVMVDDAHSLGVI 217
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas
paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A*
2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Length = 427
Score = 29.9 bits (68), Expect = 0.028
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 13 PIPAIADICAEYDMWLHVDAAWGGGAL 39
P+ + + ++ + VD A G
Sbjct: 212 PLKEMVAVAKKHGAMVLVDEAHSMGFF 238
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative,
PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 28.8 bits (65), Expect = 0.072
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 14 IPAIADICAEYDMWLHVDAAWGGGALVS 41
+ I+ C E+ ++L +D A AL S
Sbjct: 166 LEDISASCKEHGLYLFLDGARLASALSS 193
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme
biosynthesis, pyridoxal PHOS dependent, transferase,
acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus}
SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Length = 401
Score = 28.4 bits (64), Expect = 0.11
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 9 GAFDPIPAIADICAEYDMWLHVD 31
G F PI I DI E+ ++D
Sbjct: 192 GDFGPIKEICDIAEEFGALTYID 214
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas
putida} SCOP: c.67.1.1
Length = 356
Score = 27.9 bits (63), Expect = 0.14
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 14 IPAIADICAEYDMWLHVDAAWGGGALVS 41
I AI D+C + LH+D + ALVS
Sbjct: 162 IEAIGDVCKSSSLGLHMDGSRFANALVS 189
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster
synthesis, C-S BE transferase; HET: PLP; 2.00A
{Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Length = 384
Score = 27.8 bits (63), Expect = 0.15
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 9 GAFDPIPAIADICAEY--DMWLHVDAA 33
G P+ + I + + +HVDA
Sbjct: 153 GTIQPVEDVTRIVKKKNKETLVHVDAV 179
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for
structural genomics, JCSG; HET: MSE LLP; 1.70A
{Eubacterium rectale}
Length = 376
Score = 28.0 bits (63), Expect = 0.16
Identities = 4/24 (16%), Positives = 8/24 (33%)
Query: 9 GAFDPIPAIADICAEYDMWLHVDA 32
I + C + +M+ D
Sbjct: 158 AVLYDTMMIGEFCKKNNMFFVCDC 181
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal
binding protein complex; HET: PLP EPE; 2.53A
{Archaeoglobus fulgidus} PDB: 4eb7_A*
Length = 382
Score = 27.4 bits (62), Expect = 0.19
Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 13 PIPAIADICAEYDMWLHVDAA 33
P+ I+++ A LH+DA
Sbjct: 156 PVEEISEVLAGKAA-LHIDAT 175
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 27.4 bits (60), Expect = 0.25
Identities = 5/35 (14%), Positives = 15/35 (42%)
Query: 12 DPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRH 46
+ + +I ++ +++ +D+A K R
Sbjct: 204 SNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARD 238
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent
aminotransferase fold; HET: PLP; 2.20A {Salmonella
typhimurium} SCOP: c.67.1.3
Length = 366
Score = 27.2 bits (61), Expect = 0.30
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 9 GAFDPIPAIADICAEYDMWLHVDA 32
G +PI + + Y VDA
Sbjct: 145 GMLNPIDEVGALAHRYGKTYIVDA 168
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase;
PLP, structural genomics, NPPSFA; HET: PLP; 1.90A
{Pyrococcus horikoshii}
Length = 386
Score = 27.2 bits (61), Expect = 0.31
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 9 GAFDPIPAIADICAEYDMWLHVDA 32
G +P+P +A + E+D + VDA
Sbjct: 160 GVLNPLPELAKVAKEHDKLVFVDA 183
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national
PROJ protein structural and functional analyses; HET:
PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Length = 353
Score = 26.8 bits (60), Expect = 0.37
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 9 GAFDPIPAIADICAEYDMWLHVDA 32
G +P AI + E +DA
Sbjct: 138 GVLNPAEAIGALAKEAGALFFLDA 161
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter
freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A
2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 26.6 bits (58), Expect = 0.41
Identities = 4/33 (12%), Positives = 12/33 (36%)
Query: 14 IPAIADICAEYDMWLHVDAAWGGGALVSRKHRH 46
+ A+ ++ + + + DA K +
Sbjct: 197 MRAVRELTEAHGIKVFYDATRCVENAYFIKEQE 229
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative
aminotransferase, structural genomics, center for
structural genomics, JCSG; HET: PLP; 1.65A {Mus
musculus} PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Length = 393
Score = 26.1 bits (58), Expect = 0.72
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 9 GAFDPIPAIADICAEYDMWLHVDA 32
G P+ ++C Y L VD+
Sbjct: 162 GVVQPLDGFGELCHRYQCLLLVDS 185
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP;
2.58A {Klebsiella pneumoniae}
Length = 411
Score = 25.7 bits (57), Expect = 0.82
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 9 GAFDPIPAIADICAEYDMWLHVDA 32
P+ + +IC YD + DA
Sbjct: 152 TMLQPLAELGEICRRYDALFYTDA 175
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate,
transferase; HET: PLP SLP; 1.55A {Rattus norvegicus}
PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Length = 432
Score = 25.7 bits (57), Expect = 0.87
Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 10/31 (32%)
Query: 13 PIPAIADICAEYDM----------WLHVDAA 33
PI I+ + +H DAA
Sbjct: 193 PISEISRRIKALNQIRAASGLPRVLVHTDAA 223
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate
dependent decarboxylase, acid stress stringent response;
HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Length = 715
Score = 25.8 bits (56), Expect = 0.89
Identities = 8/40 (20%), Positives = 11/40 (27%), Gaps = 2/40 (5%)
Query: 6 TVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHR 45
T G I +H D+AW S +
Sbjct: 307 TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYE 344
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A
{Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Length = 392
Score = 25.7 bits (57), Expect = 0.89
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 9 GAFDPIPAIADICAEYDMWLHVDA 32
G +PI AI + + + +L VDA
Sbjct: 148 GTINPIDAIGALVSAHGAYLIVDA 171
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent
enzymes, purine metabolism transaminases,
aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Length = 416
Score = 25.7 bits (57), Expect = 0.92
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 9 GAFDPIPAIADICAEYDMWLHVDA 32
G P+ AI + C D VDA
Sbjct: 150 GRIHPLKAIGEACRTEDALFIVDA 173
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein,
PLP-dependent transferase; HET: LLP; 1.75A {Aedes
aegypti} PDB: 2hui_A* 2huu_A*
Length = 393
Score = 25.7 bits (57), Expect = 1.0
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 9 GAFDPIPAIADICAEYDMWLHVDA 32
G + + +C +++ L VD
Sbjct: 158 GVLQGLEGVGALCHQHNCLLIVDT 181
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A
{Staphylococcus aureus}
Length = 446
Score = 25.6 bits (56), Expect = 1.0
Identities = 3/23 (13%), Positives = 10/23 (43%)
Query: 14 IPAIADICAEYDMWLHVDAAWGG 36
+ + + ++ + +D A G
Sbjct: 164 VEEVIKSLHQLNIPVLIDEAHGA 186
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: PLP; 1.70A {Nostoc SP}
SCOP: c.67.1.3
Length = 393
Score = 25.7 bits (57), Expect = 1.0
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 9 GAFDPIPAIADICAEYDMWLHVDA 32
GA P+ + ++C E+ L VD
Sbjct: 173 GARQPLEGVGELCREFGTLLLVDT 196
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway,
transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP:
c.67.1.3 PDB: 2ch2_A*
Length = 396
Score = 25.3 bits (56), Expect = 1.2
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 9 GAFDPIPAIADICAEYDMWLHVDA 32
G P+ + IC ++D L VDA
Sbjct: 157 GLLQPLEGVGQICHQHDCLLIVDA 180
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A
{Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Length = 384
Score = 25.3 bits (56), Expect = 1.5
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 9 GAFDPIPAIADICAEYDMWLHVDA 32
G +P+ + + +Y + VD
Sbjct: 141 GVREPVKDVINKIRKYVELIVVDG 164
>3op7_A Aminotransferase class I and II; PLP-dependent transferase,
structural genomics, joint center structural genomics,
JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB:
3p6k_A*
Length = 375
Score = 24.8 bits (55), Expect = 2.0
Identities = 3/16 (18%), Positives = 8/16 (50%)
Query: 16 AIADICAEYDMWLHVD 31
+ +I +E ++ D
Sbjct: 178 ELVEIASEVGAYILSD 193
>3pj0_A LMO0305 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Length = 359
Score = 24.2 bits (53), Expect = 2.8
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 11 FDPIPAIADICAEYDMWLHVDAA 33
F+ + I++ C E + LH+D A
Sbjct: 157 FEELEKISEYCHEQGISLHLDGA 179
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase;
structural genomics, joint center for structural
genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium
sibiricum}
Length = 357
Score = 24.2 bits (53), Expect = 2.9
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 11 FDPIPAIADICAEYDMWLHVDAA 33
F + I+ C E + LH+D A
Sbjct: 155 FSELETISRYCRERGIRLHLDGA 177
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG,
lyase, PSI-2, protein structure initiative; HET: MSE;
1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Length = 275
Score = 24.3 bits (52), Expect = 3.7
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 8 LGAFDPIPAIADICAEYDMWL 28
L + A+A CAE L
Sbjct: 193 LAHEEEYRAVAKACAEEGFAL 213
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium
tuberculosis}
Length = 406
Score = 24.1 bits (53), Expect = 3.8
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 7 VLGAFDPIPAIADICAEYDMWLHVDAA 33
LG + A+ + + + VD +
Sbjct: 177 TLGGVTDLRAMTKLVHDVGALVVVDHS 203
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, csgid; 2.05A {Bacillus anthracis}
Length = 452
Score = 23.7 bits (52), Expect = 5.4
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 15 PAIADICAEYDMWLHVD 31
A+ + C ++ L D
Sbjct: 239 KAVHETCQKHGALLISD 255
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus}
PDB: 3b1c_A* 3b1e_A*
Length = 392
Score = 23.6 bits (52), Expect = 5.5
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 12/36 (33%)
Query: 16 AIADICAEYDMWL-----HVDAAWGGGALVSRKHRH 46
I +C ++ + L H D G H H
Sbjct: 188 QIGHLCQKHHVILVSDEIHQDLTLFG-------HEH 216
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate;
HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3
PDB: 1c7o_A*
Length = 399
Score = 23.3 bits (51), Expect = 6.1
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 12/36 (33%)
Query: 16 AIADICAEYDMWL-----HVDAAWGGGALVSRKHRH 46
I DI + D+ L H D G + H
Sbjct: 188 KIKDIVLKSDLMLWSDEIHFDLIMPG-------YEH 216
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Length = 379
Score = 23.5 bits (51), Expect = 6.3
Identities = 5/34 (14%), Positives = 14/34 (41%)
Query: 5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA 38
+ ++ + + I A+++ L +D G
Sbjct: 148 SGIILSEEYIKALSEAVHSVGGLLVIDCIASGCV 181
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative
PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A
{Lactobacillus delbrueckii subsp}
Length = 391
Score = 23.2 bits (51), Expect = 6.3
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 12/36 (33%)
Query: 16 AIADICAEYDMWL-----HVDAAWGGGALVSRKHRH 46
IA++CA++ + L H D
Sbjct: 184 RIAELCAKHQVLLISDEIHGDLVLTD-------EDI 212
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent
transferase-like fold, ST genomics, joint center for
structural genomics, JCSG; HET: MSE LLP PLP; 1.55A
{Mesorhizobium loti} PDB: 3fcr_A*
Length = 460
Score = 23.3 bits (51), Expect = 6.6
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 15 PAIADICAEYDMWLHVD 31
I + +YD+ L D
Sbjct: 245 EKIQAVLKKYDVLLVAD 261
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for
structural genomics, JCSG, prote structure initiative,
PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Length = 444
Score = 23.5 bits (51), Expect = 6.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 16 AIADICAEYDMWLHVDAAWG 35
+A+I YD+ L +D A+G
Sbjct: 230 HLAEIAKRYDIPLIIDNAYG 249
>3l8a_A METC, putative aminotransferase, probable beta-cystathi;
beta-cystathionase, lyase; HET: PLP; 1.54A
{Streptococcus mutans}
Length = 421
Score = 23.3 bits (51), Expect = 6.7
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 12/36 (33%)
Query: 16 AIADICAEYDMWL-----HVDAAWGGGALVSRKHRH 46
IA++C ++ + L H D A G + H
Sbjct: 218 KIAELCKKHGVILVSDEIHQDLALFG-------NTH 246
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain,
small C-TER domain, open alpha-beta structure.,
transferase; HET: PLP; 2.50A {Escherichia coli} SCOP:
c.67.1.3
Length = 390
Score = 23.2 bits (51), Expect = 6.7
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 12/36 (33%)
Query: 16 AIADICAEYDMWL-----HVDAAWGGGALVSRKHRH 46
+AD+C + + + H+D WG H
Sbjct: 186 IMADLCERHGVRVISDEIHMDMVWGE-------QPH 214
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal
5'-phosphate, thiocystei aminoacrylate, enzyme-product
complex; HET: PDA; 1.55A {Synechocystis SP} SCOP:
c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Length = 390
Score = 23.3 bits (51), Expect = 6.8
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 7 VLGAFDPIPAIADIC----AEYDMWLHVDAA 33
G P+ I +C Y + + VD A
Sbjct: 166 NTGQVLPLAEIMAVCRRHQGNYPVRVLVDGA 196
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural
genomics, niaid, national institute of allergy AN
infectious diseases; HET: PLP; 1.50A {Clostridium
difficile} PDB: 4dgt_A*
Length = 391
Score = 23.3 bits (51), Expect = 6.9
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 12/36 (33%)
Query: 16 AIADICAEYDMWL-----HVDAAWGGGALVSRKHRH 46
+ DIC ++++ + H D H+H
Sbjct: 188 KLGDICLKHNVKIISDEIHSDIILKK-------HKH 216
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf
structural genomics, center for structural genomics of
INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus
anthracis str} PDB: 3t32_A*
Length = 383
Score = 23.2 bits (51), Expect = 6.9
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 12/36 (33%)
Query: 16 AIADICAEYDMWL-----HVDAAWGGGALVSRKHRH 46
+ +C +Y++ + H D + H H
Sbjct: 180 KLGSLCTKYNVIVVADEIHSDIIYAD-------HTH 208
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET:
ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A*
3nu8_A* 3nu7_A* 3nub_A*
Length = 367
Score = 23.2 bits (51), Expect = 7.2
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 13 PIPAIADICAEYDMWLHVDAAWGGGA 38
AI I ++Y + + DAA GA
Sbjct: 138 DFDAINAIASKYGIPVIEDAAQSFGA 163
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal
phosphate, structural PSI, protein structure initiative;
HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB:
1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Length = 406
Score = 22.8 bits (50), Expect = 8.8
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 7 VLGAFDPIPAIADICAEYDMWLHVDAA 33
VLG +P+ + + ++ + VD A
Sbjct: 176 VLGTENPLAEMITLAHQHGAKVLVDGA 202
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism;
HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2
PDB: 2c44_A 2v1p_A* 2v0y_A*
Length = 467
Score = 23.1 bits (49), Expect = 9.2
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 14 IPAIADICAEYDMWLHVDAA 33
+ A+ I +YD+ + +D+A
Sbjct: 206 LKAMYSIAKKYDIPVVMDSA 225
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase;
HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Length = 420
Score = 22.8 bits (50), Expect = 9.3
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 7 VLGAFDPIPAIADICAEYDMWLHVDAA 33
LG +P IA + + + VDA
Sbjct: 181 TLGCVNPAEEIAQLAHQAGAKVLVDAC 207
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.473
Gapped
Lambda K H
0.267 0.0853 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,062,201
Number of extensions: 51080
Number of successful extensions: 237
Number of sequences better than 10.0: 1
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 74
Length of query: 63
Length of database: 6,701,793
Length adjustment: 34
Effective length of query: 29
Effective length of database: 5,752,479
Effective search space: 166821891
Effective search space used: 166821891
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.2 bits)