RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14030
(63 letters)
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 476
Score = 54.1 bits (129), Expect = 3e-11
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
GTT +FD + + IC E D+WLHVDAA+ G A + + RHLL G+E
Sbjct: 244 GTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEF 293
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 445
Score = 47.6 bits (112), Expect = 5e-09
Identities = 11/51 (21%), Positives = 18/51 (35%)
Query: 3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
D + +A ICA YD+ V+ A+G + + R
Sbjct: 202 TACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGR 252
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 42.6 bits (99), Expect = 3e-07
Identities = 9/44 (20%), Positives = 14/44 (31%)
Query: 3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRH 46
D I IA IC YD+ ++ A+ +
Sbjct: 219 LTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLK 262
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
{Escherichia coli [TaxId: 562]}
Length = 450
Score = 38.3 bits (88), Expect = 1e-05
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 7/66 (10%)
Query: 4 GTTVLGAFDPIPAIADICAE------YDMWLHVDAAWGGGAL-VSRKHRHLLTGIERPQN 56
G T G ++ + D + D+ +H+DAA GG + R ++
Sbjct: 208 GVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKS 267
Query: 57 RSEDTP 62
S
Sbjct: 268 ISASGH 273
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 30.7 bits (68), Expect = 0.006
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 12 DPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRH 46
+ A+ I +YD+ + +D+A K R
Sbjct: 204 ANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQRE 238
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 30.3 bits (67), Expect = 0.008
Identities = 5/35 (14%), Positives = 15/35 (42%)
Query: 12 DPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRH 46
+ + +I ++ +++ +D+A K R
Sbjct: 203 SNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARD 237
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 30.1 bits (67), Expect = 0.010
Identities = 5/46 (10%), Positives = 15/46 (32%)
Query: 1 MFPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRH 46
+ + + A+ ++ + Y + + DA K +
Sbjct: 184 VNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQE 229
>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain
{Lactobacillus sp., strain 30a [TaxId: 1591]}
Length = 462
Score = 26.5 bits (57), Expect = 0.19
Identities = 5/34 (14%), Positives = 10/34 (29%)
Query: 13 PIPAIADICAEYDMWLHVDAAWGGGALVSRKHRH 46
+ ++ D+AW G R+
Sbjct: 191 NAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRN 224
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc
43554 [TaxId: 232]}
Length = 464
Score = 24.6 bits (53), Expect = 0.96
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 35 GGGALVSRKHRHLLTGIERPQN 56
GG L+ + GI+ N
Sbjct: 54 NGGTLLIPNGTYHFLGIQMKSN 75
>d2q66a3 d.58.16.1 (A:352-529) Poly(A) polymerase, PAP, C-terminal
domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 178
Score = 23.8 bits (51), Expect = 1.5
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 12/44 (27%)
Query: 23 EYDMWLHVDAA----------WGGGALVSRKHRHLLTGIERPQN 56
Y +L + A W G LV K R L+ +E
Sbjct: 6 RYKFYLEITAYTRGSDEQHLKWSG--LVESKVRLLVMKLEVLAG 47
>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 404
Score = 23.2 bits (49), Expect = 3.4
Identities = 5/39 (12%), Positives = 12/39 (30%)
Query: 14 IPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIE 52
+ + ++C + + D G A R +
Sbjct: 211 LMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVR 249
>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus
thermophilus [TaxId: 274]}
Length = 382
Score = 22.4 bits (47), Expect = 5.2
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 16 AIADICAEYDMWLHVDAAW 34
A+A + E+D +L D +
Sbjct: 188 ALARLAVEHDFYLVSDEIY 206
>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 388
Score = 22.1 bits (46), Expect = 6.2
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 16 AIADICAEYDMWLHVDAAWG 35
IAD E+D+ + D +
Sbjct: 183 EIADFVVEHDLIVISDEVYE 202
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.140 0.473
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 256,757
Number of extensions: 8919
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 14
Length of query: 63
Length of database: 2,407,596
Length adjustment: 32
Effective length of query: 31
Effective length of database: 1,968,236
Effective search space: 61015316
Effective search space used: 61015316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.6 bits)