Query psy14031
Match_columns 280
No_of_seqs 226 out of 1426
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 17:51:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14031.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14031hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lsh_B Lipovitellin (LV-2); vi 97.9 1.8E-06 6.1E-11 75.8 0.0 59 4-69 257-318 (319)
2 2jv8_A Uncharacterized protein 27.1 72 0.0024 19.9 3.4 23 67-89 8-30 (73)
3 3uv0_A Mutator 2, isoform B; F 26.8 98 0.0033 21.9 4.5 21 67-87 51-71 (102)
4 1fs0_G ATP synthase gamma subu 21.5 9.8 0.00033 31.2 -1.9 10 140-149 68-77 (230)
5 1dum_A Magainin 2; antibiotic, 20.7 20 0.00069 17.9 -0.1 15 158-172 3-17 (26)
6 2ck3_G ATP synthase subunit ga 19.4 16 0.00053 30.9 -1.1 11 139-149 75-85 (272)
7 4sgb_I Potato inhibitor, PCI-1 18.4 38 0.0013 20.4 0.8 15 266-280 29-43 (51)
8 3oee_G ATP synthase subunit ga 15.9 17 0.00058 30.8 -1.7 10 140-149 82-91 (278)
9 3oaa_G ATP synthase gamma chai 15.9 17 0.00058 30.9 -1.7 10 140-149 85-94 (286)
10 3kbg_A 30S ribosomal protein S 15.7 1.9E+02 0.0065 23.3 4.6 15 77-91 33-47 (213)
No 1
>1lsh_B Lipovitellin (LV-2); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: f.7.1.1
Probab=97.88 E-value=1.8e-06 Score=75.83 Aligned_cols=59 Identities=20% Similarity=0.532 Sum_probs=0.0
Q ss_pred cceEEEEecCCceecCCCCeeee--ccCeEEEEeeecCC-CceEEEEEecCCCCCCeeeEEEEEEEECC
Q psy14031 4 GDGVCTVFGDPHYRTFDGKFYSF--QGSCKYQLTADCTG-GAFSIRVTNDARDTKTSSWTKTVSIRIGD 69 (280)
Q Consensus 4 ~~~~C~~~G~~h~~TFDg~~y~f--~g~C~YvL~~~~~~-~~f~V~~~~~~~~~~~~~~~~~v~v~~~~ 69 (280)
..++|.+..+ .++|||++.|.+ ++.|++||++||.. ..|.|+++..... .++|.|.+++
T Consensus 257 ~~a~C~v~~~-~vtTFdNk~Y~~~mp~sCyhVLaqDc~~e~kF~VL~Kk~~~n------qkei~Vk~~~ 318 (319)
T 1lsh_B 257 VASACELNEQ-SLTTFNGAFFNYDMPESCYHVLAQECSSRPPFIVLIKLDSER------RISLELQLDD 318 (319)
T ss_dssp ---------------------------------------------------------------------
T ss_pred cCceEEEECC-EEEccCCceecCCCCCceeEEEEeeCCCCceEEEEEeeCCCC------ceEEEEEecC
Confidence 4579999987 899999999986 49999999999986 4999999886532 2667777654
No 2
>2jv8_A Uncharacterized protein NE1242; solution structure, NESG, structural genomics, unknown function, PSI-2; NMR {Nitrosomonas europaea atcc 19718}
Probab=27.13 E-value=72 Score=19.85 Aligned_cols=23 Identities=9% Similarity=0.388 Sum_probs=18.9
Q ss_pred ECCEEEEEccccEEEECCEEeee
Q psy14031 67 IGDMKVNLGEKLRVKIDGQRVAL 89 (280)
Q Consensus 67 ~~~~~i~l~~~~~V~vng~~~~l 89 (280)
+.+.+|.|..+..+++||++++.
T Consensus 8 feggtidieddtsltingkeisy 30 (73)
T 2jv8_A 8 FEGGTIDIEDDTSLTINGKEISY 30 (73)
T ss_dssp ETTEEEEEETTEEEEETTEECCC
T ss_pred ecCCeeeeccCceeEECCEEeeh
Confidence 46678888888899999999864
No 3
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=26.85 E-value=98 Score=21.86 Aligned_cols=21 Identities=5% Similarity=-0.138 Sum_probs=14.9
Q ss_pred ECCEEEEEccccEEEECCEEe
Q psy14031 67 IGDMKVNLGEKLRVKIDGQRV 87 (280)
Q Consensus 67 ~~~~~i~l~~~~~V~vng~~~ 87 (280)
-++..+....+|+|.|||+++
T Consensus 51 ~~G~~~l~S~nGtVFVNGqrv 71 (102)
T 3uv0_A 51 RRGVVRLAALVGKIFVNDQEE 71 (102)
T ss_dssp ETTEEEEEESSSCEEETTEEE
T ss_pred CCceEEEEeccCcEEECCEEe
Confidence 345444335678899999998
No 4
>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A {Escherichia coli} SCOP: c.49.2.1
Probab=21.51 E-value=9.8 Score=31.23 Aligned_cols=10 Identities=50% Similarity=0.850 Sum_probs=8.9
Q ss_pred eecccCCCCC
Q psy14031 140 GLCGNFNGIS 149 (280)
Q Consensus 140 GLCGn~ng~~ 149 (280)
||||.||.+-
T Consensus 68 GLcG~~Nsni 77 (230)
T 1fs0_G 68 GLCGGLNINL 77 (230)
T ss_dssp SCSTTHHHHH
T ss_pred cccccccHHH
Confidence 9999999864
No 5
>1dum_A Magainin 2; antibiotic, dimer, amphipathic helix, membrane, vesicle, bilayer, antimicrobial protein; NMR {Synthetic} SCOP: j.4.1.1 PDB: 2mag_A
Probab=20.74 E-value=20 Score=17.91 Aligned_cols=15 Identities=40% Similarity=0.957 Sum_probs=11.7
Q ss_pred CceecChhhhhccee
Q psy14031 158 GRVVTDANKFGASWR 172 (280)
Q Consensus 158 g~~~~~~~~F~~sW~ 172 (280)
|....+...||..|.
T Consensus 3 gkylhsakkfgkawv 17 (26)
T 1dum_A 3 GKYLHSAKKFGKAWV 17 (26)
T ss_dssp SSTTTTHHHHHHHHH
T ss_pred hHHHHHHHHHhHHHH
Confidence 456678889999994
No 6
>2ck3_G ATP synthase subunit gamma\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: c.49.2.1 PDB: 1cow_G* 1bmf_G* 1e1q_G* 1e1r_G* 1efr_G* 1e79_G* 1h8h_G* 1nbm_G* 1ohh_G* 1qo1_G 1w0j_G* 1w0k_G* 1h8e_G* 2jiz_G* 2jj1_G* 2jj2_G* 2v7q_G* 2wss_G* 2xnd_G* 2w6j_G ...
Probab=19.43 E-value=16 Score=30.93 Aligned_cols=11 Identities=36% Similarity=0.788 Sum_probs=9.3
Q ss_pred eeecccCCCCC
Q psy14031 139 CGLCGNFNGIS 149 (280)
Q Consensus 139 ~GLCGn~ng~~ 149 (280)
.||||.||.+-
T Consensus 75 rGLcG~~Nsni 85 (272)
T 2ck3_G 75 RGLCGAIHSSV 85 (272)
T ss_dssp CCCSSSSHHHH
T ss_pred ccccccccHHH
Confidence 49999999864
No 7
>4sgb_I Potato inhibitor, PCI-1; complex(serine proteinase-inhibitor); 2.10A {Streptomyces griseus} SCOP: g.69.1.1 PDB: 2jzm_A 1tih_A 1qh2_B
Probab=18.44 E-value=38 Score=20.44 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=12.0
Q ss_pred CCCCCCCCCCCCCCC
Q psy14031 266 DWRKLTGCHSGAPPR 280 (280)
Q Consensus 266 ~WR~~~~C~~~cp~~ 280 (280)
+++++-.||.+|-||
T Consensus 29 dp~npk~Cp~~CD~r 43 (51)
T 4sgb_I 29 DPKKPKACPLNCDPH 43 (51)
T ss_dssp CTTSCCCEECCBCTT
T ss_pred CCCCCCcCcccCCCc
Confidence 478888898888775
No 8
>3oee_G ATP synthase subunit gamma; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} SCOP: c.49.2.0 PDB: 2wpd_G* 3fks_G 2hld_G* 3oeh_G* 3ofn_G* 3zry_G* 4b2q_G* 3oe7_G*
Probab=15.91 E-value=17 Score=30.81 Aligned_cols=10 Identities=40% Similarity=0.939 Sum_probs=9.0
Q ss_pred eecccCCCCC
Q psy14031 140 GLCGNFNGIS 149 (280)
Q Consensus 140 GLCGn~ng~~ 149 (280)
||||.||.+-
T Consensus 82 GLcG~fN~ni 91 (278)
T 3oee_G 82 GLCGSIHSQL 91 (278)
T ss_dssp CCSTTHHHHH
T ss_pred cccchhhHHH
Confidence 9999999875
No 9
>3oaa_G ATP synthase gamma chain; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1}
Probab=15.87 E-value=17 Score=30.92 Aligned_cols=10 Identities=50% Similarity=0.850 Sum_probs=9.1
Q ss_pred eecccCCCCC
Q psy14031 140 GLCGNFNGIS 149 (280)
Q Consensus 140 GLCGn~ng~~ 149 (280)
||||.||.+-
T Consensus 85 GLcG~fN~ni 94 (286)
T 3oaa_G 85 GLCGGLNINL 94 (286)
T ss_dssp CCSTTHHHHH
T ss_pred ccccchhHHH
Confidence 9999999875
No 10
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=15.67 E-value=1.9e+02 Score=23.27 Aligned_cols=15 Identities=33% Similarity=0.308 Sum_probs=11.9
Q ss_pred ccEEEECCEEeeeCc
Q psy14031 77 KLRVKIDGQRVALPY 91 (280)
Q Consensus 77 ~~~V~vng~~~~lp~ 91 (280)
.+.|+|||+.+.-|.
T Consensus 33 ~~~I~VDGKvr~d~~ 47 (213)
T 3kbg_A 33 NGLVKVDGKTVREKK 47 (213)
T ss_dssp TTCEEETTEECCCTT
T ss_pred CCCEEECCEEecccC
Confidence 468999999987553
Done!