RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14031
         (280 letters)



>d1frfl_ e.18.1.1 (L:) Nickel-iron hydrogenase, large subunit
           {Desulfovibrio fructosovorans [TaxId: 878]}
          Length = 543

 Score = 27.4 bits (60), Expect = 2.0
 Identities = 18/102 (17%), Positives = 39/102 (38%), Gaps = 30/102 (29%)

Query: 54  TKTSSWTKTVSI----RI-GDMKVNLGEKLRVKIDGQRVALPYDLPSKVIVTKTAESVLV 108
           T  S++T  + +    RI G ++      + V+++  +V             K A S   
Sbjct: 1   TPQSTFTGPIVVDPITRIEGHLR------IMVEVENGKV-------------KDAWSS-S 40

Query: 109 ETAIGIKVLWDGNSFLEVSAPAKFKILDRLCGLCGNFNGISS 150
           +   G++++  G    +           R CG+C   + ++S
Sbjct: 41  QLFRGLEIILKGRDPRDAQH-----FTQRACGVCTYVHALAS 77


>d1e3db_ e.18.1.1 (B:) Nickel-iron hydrogenase, large subunit
           {Desulfovibrio desulfuricans [TaxId: 876]}
          Length = 537

 Score = 27.5 bits (60), Expect = 2.2
 Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 30/102 (29%)

Query: 54  TKTSSWTKTVSI----RI-GDMKVNLGEKLRVKIDGQRVALPYDLPSKVIVTKTAESVLV 108
           T  S++T  + +    RI G ++      + V+++G  +             K A S   
Sbjct: 1   TPRSNYTGPIVVDPLTRIEGHLR------IEVEVEGGVI-------------KEARSC-A 40

Query: 109 ETAIGIKVLWDGNSFLEVSAPAKFKILDRLCGLCGNFNGISS 150
               GI+ +  G    +           R CG+C   + ++S
Sbjct: 41  TLFRGIETILKGRDPRDAQH-----FTQRTCGVCTYTHALAS 77


>d1a79a1 c.52.2.1 (A:83-179) Tetrameric tRNA splicing endonuclease,
           C-terminal domain {Archaeon Methanococcus jannaschii
           [TaxId: 2190]}
          Length = 97

 Score = 25.6 bits (56), Expect = 2.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 156 KRGRVVTDANKFGASWRV 173
            RG +V    K+GA +R+
Sbjct: 15  TRGYIVKTGLKYGADFRL 32


>d2gcxa1 b.34.1.2 (A:1-75) Ferrous iron transport protein A, FeoA
           {Klebsiella pneumoniae [TaxId: 573]}
          Length = 75

 Score = 25.0 bits (55), Expect = 3.8
 Identities = 4/31 (12%), Positives = 13/31 (41%)

Query: 74  LGEKLRVKIDGQRVALPYDLPSKVIVTKTAE 104
           LG+ + ++     + L     + + +   A+
Sbjct: 45  LGDPVHIETRRVSLVLRKKDLALIELEAVAQ 75


>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 65

 Score = 24.4 bits (53), Expect = 4.1
 Identities = 6/34 (17%), Positives = 15/34 (44%)

Query: 144 NFNGISSDDLTTKRGRVVTDANKFGASWRVGGRK 177
           ++  I  +DL+ ++G  +    + G  W+     
Sbjct: 12  DYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLA 45


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.441 

Gapped
Lambda     K      H
   0.267   0.0702    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,086,391
Number of extensions: 50608
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 10
Length of query: 280
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 196
Effective length of database: 1,254,276
Effective search space: 245838096
Effective search space used: 245838096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.9 bits)