BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14035
         (90 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1YHF|A Chain A, Crystal Structure Of Conserved Spy1581 Protein Of Unknown
           Function From Streptococcus Pyogenes
          Length = 115

 Score = 29.3 bits (64), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 17/69 (24%), Positives = 30/69 (43%)

Query: 17  LGLVFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMTITTWVICAGIFRISSSGKHELSL 76
           LG+  FS+  G  I R    G   +++   L+E+ +   T+ +  G   +  +G      
Sbjct: 40  LGITVFSLDKGQEIGRHSSPGDAXVTILSGLAEITIDQETYRVAEGQTIVXPAGIPHALY 99

Query: 77  AVRPIELLL 85
           AV   + LL
Sbjct: 100 AVEAFQXLL 108


>pdb|3CMQ|A Chain A, Crystal Structure Of Human Mitochondrial Phenylalanine
          Trna Synthetase
 pdb|3HFV|A Chain A, Crystal Structure Of Human Mitochondrial
          Phenylalanyl-Trna Synthetase Complexed With M-Tyrosine
 pdb|3TEG|A Chain A, Bacterial And Eukaryotic Phenylalanyl-Trna Synthetases
          Catalyze Misaminoacylation Of Trnaphe With
          3,4-Dihydroxy-L-Phenylalanine (L- Dopa)
 pdb|3TUP|A Chain A, Crystal Structure Of Human Mitochondrial Phers Complexed
          With Trnaphe In The Active Open State
          Length = 415

 Score = 29.3 bits (64), Expect = 0.66,   Method: Composition-based stats.
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 3/25 (12%)

Query: 33 IGKAGKPLLSVFESLSEVVMTITTW 57
          +G+ G PL SV+++LS VV   TTW
Sbjct: 66 VGRFGTPLFSVYDNLSPVV---TTW 87


>pdb|1MZA|A Chain A, Crystal Structure Of Human Pro-Granzyme K
 pdb|1MZD|A Chain A, Crystal Structure Of Human Pro-Granzyme K
          Length = 240

 Score = 26.9 bits (58), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 58  VICAGIFRISSSGKHELSLAVRP 80
           +IC G+F    SG HE  +A +P
Sbjct: 194 LICKGVFHAIVSGGHECGVATKP 216


>pdb|1VLU|A Chain A, Crystal Structure Of Gamma-Glutamyl Phosphate Reductase
           (Yor323c) From Saccharomyces Cerevisiae At 2.40 A
           Resolution
 pdb|1VLU|B Chain B, Crystal Structure Of Gamma-Glutamyl Phosphate Reductase
           (Yor323c) From Saccharomyces Cerevisiae At 2.40 A
           Resolution
          Length = 468

 Score = 25.4 bits (54), Expect = 9.2,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 24/49 (48%)

Query: 27  GIAIARIGKAGKPLLSVFESLSEVVMTITTWVICAGIFRISSSGKHELS 75
           G+ + ++      LL +FES  EV+  IT   I +G   I   GK  ++
Sbjct: 117 GLTLYQVTAPVGVLLVIFESRPEVIANITALSIKSGNAAILKGGKESVN 165


>pdb|3V8G|A Chain A, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
           Transporter Homologue (Gltph)
 pdb|3V8G|B Chain B, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
           Transporter Homologue (Gltph)
 pdb|3V8G|C Chain C, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
           Transporter Homologue (Gltph)
 pdb|3V8G|D Chain D, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
           Transporter Homologue (Gltph)
 pdb|3V8G|E Chain E, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
           Transporter Homologue (Gltph)
 pdb|3V8G|F Chain F, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
           Transporter Homologue (Gltph)
          Length = 422

 Score = 25.0 bits (53), Expect = 9.9,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 13/63 (20%)

Query: 16  VLGLVFFSIAMGIAIA--------RIGKAGKPLLSVFESLSEVVMTITTWVICAGIFRIS 67
           VL  +FF+I +GIAI         ++ K+ + LL     L+E +     + IC G+ + +
Sbjct: 151 VLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAM-----YKICNGVMQYA 205

Query: 68  SSG 70
             G
Sbjct: 206 PIG 208


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.140    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,340,670
Number of Sequences: 62578
Number of extensions: 66205
Number of successful extensions: 208
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 203
Number of HSP's gapped (non-prelim): 10
length of query: 90
length of database: 14,973,337
effective HSP length: 57
effective length of query: 33
effective length of database: 11,406,391
effective search space: 376410903
effective search space used: 376410903
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)