Query psy14035
Match_columns 90
No_of_seqs 155 out of 1028
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 17:57:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14035.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14035hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3787|consensus 99.7 7.4E-18 1.6E-22 132.0 8.3 81 5-88 180-264 (507)
2 PRK01663 C4-dicarboxylate tran 99.6 6.8E-16 1.5E-20 120.3 9.2 75 12-86 146-221 (428)
3 PRK13027 C4-dicarboxylate tran 99.6 1.3E-15 2.9E-20 118.5 9.2 75 12-86 146-221 (421)
4 PRK11283 gltP glutamate/aspart 99.6 3.6E-15 7.8E-20 116.5 8.7 75 12-86 156-232 (437)
5 PRK14695 serine/threonine tran 99.6 8.6E-15 1.9E-19 110.8 9.0 72 12-86 57-129 (319)
6 PRK13628 serine/threonine tran 99.5 3.1E-14 6.7E-19 110.3 8.7 72 12-86 143-215 (402)
7 COG1301 GltP Na+/H+-dicarboxyl 99.5 6.7E-14 1.4E-18 109.1 9.3 75 12-86 140-216 (415)
8 PF00375 SDF: Sodium:dicarboxy 99.5 6.6E-14 1.4E-18 107.3 8.2 75 12-86 134-209 (390)
9 COG1823 Predicted Na+/dicarbox 99.3 5.9E-12 1.3E-16 97.6 6.8 76 13-88 184-264 (458)
10 COG3633 SstT Na+/serine sympor 98.8 6E-09 1.3E-13 79.4 5.4 69 12-83 143-212 (407)
11 PF00375 SDF: Sodium:dicarboxy 50.3 94 0.002 23.9 6.9 66 20-88 5-71 (390)
12 PF04346 EutH: Ethanolamine ut 48.0 70 0.0015 25.2 5.8 40 14-56 170-209 (354)
13 COG1301 GltP Na+/H+-dicarboxyl 47.0 98 0.0021 24.7 6.6 54 15-72 7-62 (415)
14 PRK11875 psbT photosystem II r 44.9 14 0.00031 19.0 1.1 11 16-26 13-23 (31)
15 PRK15086 ethanolamine utilizat 43.7 90 0.0019 24.7 5.8 36 14-52 171-206 (372)
16 PRK13628 serine/threonine tran 42.9 71 0.0015 25.1 5.2 64 1-69 1-64 (402)
17 CHL00031 psbT photosystem II p 40.0 14 0.00031 19.4 0.6 11 16-26 13-23 (33)
18 PF01405 PsbT: Photosystem II 38.3 20 0.00043 18.3 1.0 11 16-26 13-23 (29)
19 PF06610 DUF1144: Protein of u 25.2 1.1E+02 0.0025 21.0 3.3 18 13-30 13-30 (143)
20 PF07271 Cytadhesin_P30: Cytad 23.7 2E+02 0.0044 21.9 4.7 39 13-51 73-113 (279)
21 PF11120 DUF2636: Protein of u 23.5 75 0.0016 18.9 1.9 20 14-33 4-23 (62)
22 PF01901 DUF70: Protein of unk 22.9 2.3E+02 0.0049 22.0 4.9 48 6-53 257-304 (332)
23 PF05024 Gpi1: N-acetylglucosa 22.7 1.9E+02 0.0041 20.3 4.2 51 15-66 4-60 (189)
24 PF07168 Ureide_permease: Urei 20.9 1E+02 0.0022 24.1 2.6 35 15-49 32-66 (336)
No 1
>KOG3787|consensus
Probab=99.74 E-value=7.4e-18 Score=131.98 Aligned_cols=81 Identities=33% Similarity=0.635 Sum_probs=76.9
Q ss_pred hhhc--ccccCCchHHHHHHHHHHHHHHhhccccCchHHHHHHHHHHHHHHHHHHHHhHhhHHHhhh--hhchhhhchhh
Q psy14035 5 QMRG--EWVVGSNVLGLVFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMTITTWVICAGIFRISSS--GKHELSLAVRP 80 (90)
Q Consensus 5 ~~~~--~~~~~~niL~vIiFsil~Gial~~~~~~~~~l~~~~~~l~~~~~~iv~~Im~~aPiGIf~L--~~~~~~~~~~~ 80 (90)
.+.+ .|.++.|+|++|+||+.||+.+++++|+++.+++||+.+++++||++.|+|||+|+||.|| +|+ ++.+|
T Consensus 180 ~~~~~~~~~~GmNvLGlVvF~~~fGivig~lG~~g~~lv~FF~~L~e~iMklV~~iMWy~PvGI~fLIagkI---lem~D 256 (507)
T KOG3787|consen 180 LPKGVPGYTDGMNVLGLVVFCIVFGIVIGKLGEKGQVLVDFFNSLNEAIMKLVSWIMWYSPVGILFLIAGKI---LEMED 256 (507)
T ss_pred cccCccccccCccchhHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHhh---hcccc
Confidence 3444 6888999999999999999999999999999999999999999999999999999999999 999 99999
Q ss_pred HHHHHHHH
Q psy14035 81 IELLLREI 88 (90)
Q Consensus 81 ~~~l~~~~ 88 (90)
+..+++++
T Consensus 257 l~~~~~~L 264 (507)
T KOG3787|consen 257 LGVTARQL 264 (507)
T ss_pred HHHHHHHH
Confidence 99999886
No 2
>PRK01663 C4-dicarboxylate transporter DctA; Reviewed
Probab=99.65 E-value=6.8e-16 Score=120.31 Aligned_cols=75 Identities=24% Similarity=0.410 Sum_probs=68.0
Q ss_pred cCCchHHHHHHHHHHHHHHhhccccCchHHHHHHHHHHHHHHHHHHHHhHhhHHHhhh-hhchhhhchhhHHHHHH
Q psy14035 12 VGSNVLGLVFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMTITTWVICAGIFRISSS-GKHELSLAVRPIELLLR 86 (90)
Q Consensus 12 ~~~niL~vIiFsil~Gial~~~~~~~~~l~~~~~~l~~~~~~iv~~Im~~aPiGIf~L-~~~~~~~~~~~~~~l~~ 86 (90)
+++|++|+++||+++|+|+...+|+++++.+++|+++++++|+++|+|+++|+||||+ ++..++.+.+.+..+++
T Consensus 146 a~gnvL~vIvFai~~GiAl~~~~e~~~~l~~~~~~~~~vi~kii~~im~laPiGVfaliA~~v~~~g~~~l~~l~~ 221 (428)
T PRK01663 146 ASGDILQVLLFAVLFGFALARLGEKGKPVFDFIESLSHVLFGIVNMIMKLAPIGAFGAMAFTIGKYGVGSLVQLGQ 221 (428)
T ss_pred hcCChHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4899999999999999999998888999999999999999999999999999999999 99977776666665554
No 3
>PRK13027 C4-dicarboxylate transporter DctA; Reviewed
Probab=99.63 E-value=1.3e-15 Score=118.47 Aligned_cols=75 Identities=19% Similarity=0.320 Sum_probs=68.4
Q ss_pred cCCchHHHHHHHHHHHHHHhhccccCchHHHHHHHHHHHHHHHHHHHHhHhhHHHhhh-hhchhhhchhhHHHHHH
Q psy14035 12 VGSNVLGLVFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMTITTWVICAGIFRISSS-GKHELSLAVRPIELLLR 86 (90)
Q Consensus 12 ~~~niL~vIiFsil~Gial~~~~~~~~~l~~~~~~l~~~~~~iv~~Im~~aPiGIf~L-~~~~~~~~~~~~~~l~~ 86 (90)
+++|++|+++||+++|+|+...+|+++++.+++++++++++|+++|+|+++|+||||+ ++..++.+.+.+..+++
T Consensus 146 a~gn~L~vIvFAi~~GiAl~~~~e~~~~l~~~~~~~~~~~~kii~~im~laPigVfaliA~~~~~~g~~~l~~l~~ 221 (421)
T PRK13027 146 AKGDILQVLLFSVLFGSALSLLGERAKRVNRLIDELSHVLFRIMGFIIKLAPLGVLGAIAFTTGKYGVGSLKQLGM 221 (421)
T ss_pred hcCChHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 3889999999999999999998888999999999999999999999999999999999 99977777766666654
No 4
>PRK11283 gltP glutamate/aspartate:proton symporter; Provisional
Probab=99.60 E-value=3.6e-15 Score=116.52 Aligned_cols=75 Identities=20% Similarity=0.385 Sum_probs=66.8
Q ss_pred cCCchHHHHHHHHHHHHHHhhcccc-CchHHHHHHHHHHHHHHHHHHHHhHhhHHHhhh-hhchhhhchhhHHHHHH
Q psy14035 12 VGSNVLGLVFFSIAMGIAIARIGKA-GKPLLSVFESLSEVVMTITTWVICAGIFRISSS-GKHELSLAVRPIELLLR 86 (90)
Q Consensus 12 ~~~niL~vIiFsil~Gial~~~~~~-~~~l~~~~~~l~~~~~~iv~~Im~~aPiGIf~L-~~~~~~~~~~~~~~l~~ 86 (90)
+++|++|+++||+++|+|+..++|+ .+++.++++.++++++|+++|+|+++|+||||+ ++.+++.+.+.+..+++
T Consensus 156 a~gn~L~vIiFai~~GiAl~~~~~~~~~~l~~~~~~~~~~~~kii~~im~~aPiGVfaliA~~~~~~g~~~l~~l~~ 232 (437)
T PRK11283 156 AKGEMLPIIFFSVLFGLGLSSLPATHREPLVTVFRSVSETMFKVTHMVMRYAPVGVFALIAVTVANFGFASLWPLAK 232 (437)
T ss_pred hcCChHHHHHHHHHHHHHHHccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4899999999999999999988654 689999999999999999999999999999999 99977777776666544
No 5
>PRK14695 serine/threonine transporter SstT; Provisional
Probab=99.58 E-value=8.6e-15 Score=110.80 Aligned_cols=72 Identities=21% Similarity=0.325 Sum_probs=63.1
Q ss_pred cCCchHHHHHHHHHHHHHHhhccccCchHHHHHHHHHHHHHHHHHHHHhHhhHHHhhh-hhchhhhchhhHHHHHH
Q psy14035 12 VGSNVLGLVFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMTITTWVICAGIFRISSS-GKHELSLAVRPIELLLR 86 (90)
Q Consensus 12 ~~~niL~vIiFsil~Gial~~~~~~~~~l~~~~~~l~~~~~~iv~~Im~~aPiGIf~L-~~~~~~~~~~~~~~l~~ 86 (90)
+++|+||+++||+++|+|+.. .+++.++++++++++++|+++|+|+++|+||||+ ++..+++|.+.+..++.
T Consensus 57 a~gn~L~iIvFAil~Gial~~---~~~~~~~~~~~l~~v~~kiv~~Vm~~aPiGVfaliA~~v~~~G~~~l~~l~~ 129 (319)
T PRK14695 57 LTANYIGILSWAVIFGIAMRE---ASKNSKELLKTIADVTSKIVEWIINLAPFGILGLVFKTISDKGVGSLANYGI 129 (319)
T ss_pred HcCCcHHHHHHHHHHHHHHHH---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 389999999999999999964 3578889999999999999999999999999999 99977777666665554
No 6
>PRK13628 serine/threonine transporter SstT; Provisional
Probab=99.54 E-value=3.1e-14 Score=110.32 Aligned_cols=72 Identities=21% Similarity=0.335 Sum_probs=62.3
Q ss_pred cCCchHHHHHHHHHHHHHHhhccccCchHHHHHHHHHHHHHHHHHHHHhHhhHHHhhh-hhchhhhchhhHHHHHH
Q psy14035 12 VGSNVLGLVFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMTITTWVICAGIFRISSS-GKHELSLAVRPIELLLR 86 (90)
Q Consensus 12 ~~~niL~vIiFsil~Gial~~~~~~~~~l~~~~~~l~~~~~~iv~~Im~~aPiGIf~L-~~~~~~~~~~~~~~l~~ 86 (90)
+++|+||+++||+++|+|+...+| ..++++++++++++|+++|+|+++|+||||+ ++..++.+.+.+..++.
T Consensus 143 ~~gniL~vIvFai~~GiAl~~~~~---~~~~~~~~~~~~~~kii~~Im~laPiGVfaliA~~v~~~g~~~l~~l~~ 215 (402)
T PRK13628 143 LNANYIGILAWAIGLGLALRHASD---TTKNVVNDLSEAVSQIVKWVIRFAPIGIFGLVASTLAETGFSALAGYAQ 215 (402)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 489999999999999999987754 3679999999999999999999999999999 99966666666655543
No 7
>COG1301 GltP Na+/H+-dicarboxylate symporters [Energy production and conversion]
Probab=99.52 E-value=6.7e-14 Score=109.12 Aligned_cols=75 Identities=29% Similarity=0.483 Sum_probs=66.3
Q ss_pred cCCchHHHHHHHHHHHHHHhhccccCch-HHHHHHHHHHHHHHHHHHHHhHhhHHHhhh-hhchhhhchhhHHHHHH
Q psy14035 12 VGSNVLGLVFFSIAMGIAIARIGKAGKP-LLSVFESLSEVVMTITTWVICAGIFRISSS-GKHELSLAVRPIELLLR 86 (90)
Q Consensus 12 ~~~niL~vIiFsil~Gial~~~~~~~~~-l~~~~~~l~~~~~~iv~~Im~~aPiGIf~L-~~~~~~~~~~~~~~l~~ 86 (90)
+++|+||+++||+++|+++..++|++++ +.++++.++++++|+++|+|+++|+|+|++ +++.++.|.+.+..++.
T Consensus 140 a~g~vLqil~fail~G~al~~~~~~~~~~v~~~~~~~~~~~~~v~~~vm~laPigvf~~~a~~v~~~G~~~L~~l~~ 216 (415)
T COG1301 140 AEGNVLQILFFAILFGLALAALGEKGKPPVENLFESLSEAMFKVTNFVMRLAPIGVFGLMAFTVAKYGFGSLLSLGK 216 (415)
T ss_pred cCCChHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcHHHHHHHHH
Confidence 4689999999999999999999988875 779999999999999999999999999999 99966666665555543
No 8
>PF00375 SDF: Sodium:dicarboxylate symporter family; InterPro: IPR001991 It has been shown [] that integral membrane proteins that mediate the uptake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families [] is known as the sodium:dicarboxylate symporter family (SDF). Such re-uptake of neurotransmitters from the synapses, is thought to be an important mechanism for terminating their action, by removing these chemicals from the synaptic cleft, and transporting them into presynaptic nerve terminals, and surrounding neuroglia. this removal is also believed to prevent them accumulating to the point of reaching neurotoxic [, ]. The structure of these transporter proteins has been variously reported to contain from 8 to 10 transmembrane (TM) regions, although 10 now seems to be the accepted value. Members of the family include: several mammalian excitatory amino acid transporters, and a number of bacterial transporters. They vary with regars to their dependence on transport of sodium, and other ions.; GO: 0017153 sodium:dicarboxylate symporter activity, 0006835 dicarboxylic acid transport, 0016020 membrane; PDB: 3V8G_B 1XFH_A 3KBC_B 2NWX_B 3V8F_B 2NWL_B 2NWW_A.
Probab=99.51 E-value=6.6e-14 Score=107.25 Aligned_cols=75 Identities=32% Similarity=0.624 Sum_probs=68.3
Q ss_pred cCCchHHHHHHHHHHHHHHhhccccCchHHHHHHHHHHHHHHHHHHHHhHhhHHHhhh-hhchhhhchhhHHHHHH
Q psy14035 12 VGSNVLGLVFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMTITTWVICAGIFRISSS-GKHELSLAVRPIELLLR 86 (90)
Q Consensus 12 ~~~niL~vIiFsil~Gial~~~~~~~~~l~~~~~~l~~~~~~iv~~Im~~aPiGIf~L-~~~~~~~~~~~~~~l~~ 86 (90)
.++|++++++||+++|+++.+.+++.+++.+++++++++++|+++|+|+++|+|+|++ ++...+.+.+.+..++.
T Consensus 134 ~~~~~L~ivvfai~~G~al~~~~~~~~~~~~~~~~~~~~~~~ii~~i~~~~Pigv~~l~a~~~~~~~~~~l~~l~~ 209 (390)
T PF00375_consen 134 ANGNILGIVVFAILFGVALGRLGEKGKPLIDFFESLNEVIMKIINWIMKLAPIGVFGLIANSIATQGLSILGALGK 209 (390)
T ss_dssp HSS-HHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHSSCCGHHHHHHH
T ss_pred hhcccchhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999999 99977777777776654
No 9
>COG1823 Predicted Na+/dicarboxylate symporter [General function prediction only]
Probab=99.30 E-value=5.9e-12 Score=97.58 Aligned_cols=76 Identities=20% Similarity=0.308 Sum_probs=68.9
Q ss_pred CCchHHHHHHHHHHHHHHhhcc----ccCchHHHHHHHHHHHHHHHHHHHHhHhhHHHhhh-hhchhhhchhhHHHHHHH
Q psy14035 13 GSNVLGLVFFSIAMGIAIARIG----KAGKPLLSVFESLSEVVMTITTWVICAGIFRISSS-GKHELSLAVRPIELLLRE 87 (90)
Q Consensus 13 ~~niL~vIiFsil~Gial~~~~----~~~~~l~~~~~~l~~~~~~iv~~Im~~aPiGIf~L-~~~~~~~~~~~~~~l~~~ 87 (90)
..+++++++|+.+.|+|..++. |+.+++.+++++++.++|++++.+++++||||+|+ +|+.++.+.+++..++.=
T Consensus 184 ~tSiIaVVIFa~~lGiAalk~~k~~~~~ge~~~~~I~t~~~ivM~lV~~VirLTPYgV~AlMtkv~ats~~~~I~~Lg~F 263 (458)
T COG1823 184 PTSIIAVVIFAAFLGIAALKLSKKDPEKGERFKAAIDTLQSIVMKLVRLVIRLTPYGVLALMTKVVATSNLEDIIKLGSF 263 (458)
T ss_pred ccceeehhHHHHHHHHHHHHhhhhchHhHhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHhhccHHHHHHHHhH
Confidence 6789999999999999998883 44689999999999999999999999999999999 999888888888888764
Q ss_pred H
Q psy14035 88 I 88 (90)
Q Consensus 88 ~ 88 (90)
+
T Consensus 264 i 264 (458)
T COG1823 264 I 264 (458)
T ss_pred H
Confidence 4
No 10
>COG3633 SstT Na+/serine symporter [Amino acid transport and metabolism]
Probab=98.83 E-value=6e-09 Score=79.41 Aligned_cols=69 Identities=19% Similarity=0.235 Sum_probs=59.0
Q ss_pred cCCchHHHHHHHHHHHHHHhhccccCchHHHHHHHHHHHHHHHHHHHHhHhhHHHhhh-hhchhhhchhhHHH
Q psy14035 12 VGSNVLGLVFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMTITTWVICAGIFRISSS-GKHELSLAVRPIEL 83 (90)
Q Consensus 12 ~~~niL~vIiFsil~Gial~~~~~~~~~l~~~~~~l~~~~~~iv~~Im~~aPiGIf~L-~~~~~~~~~~~~~~ 83 (90)
.+.|.++++.|++-+|+|+..- ++.-++.++.+++.+.++++|+++++|+|||+| +.+.++.|...+..
T Consensus 143 ~~aNyiGiLaWaiglG~Alrh~---s~~tk~~~~d~~e~vs~iV~~iI~fAP~GIfgLVasT~a~tG~~aL~g 212 (407)
T COG3633 143 LNANYIGILAWAIGLGLALRHA---SDTTKNLVNDLSEAVSKIVKVVIRFAPIGIFGLVASTLAETGFGALWG 212 (407)
T ss_pred hcCCchhhhHHHHHHhHHHHhc---cHhHHHHHHHHHHHHHHHHheeeeccCchhhHHHHHHHHhhhHHHHHH
Confidence 4889999999999999999744 456677789999999999999999999999999 99966666665543
No 11
>PF00375 SDF: Sodium:dicarboxylate symporter family; InterPro: IPR001991 It has been shown [] that integral membrane proteins that mediate the uptake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families [] is known as the sodium:dicarboxylate symporter family (SDF). Such re-uptake of neurotransmitters from the synapses, is thought to be an important mechanism for terminating their action, by removing these chemicals from the synaptic cleft, and transporting them into presynaptic nerve terminals, and surrounding neuroglia. this removal is also believed to prevent them accumulating to the point of reaching neurotoxic [, ]. The structure of these transporter proteins has been variously reported to contain from 8 to 10 transmembrane (TM) regions, although 10 now seems to be the accepted value. Members of the family include: several mammalian excitatory amino acid transporters, and a number of bacterial transporters. They vary with regars to their dependence on transport of sodium, and other ions.; GO: 0017153 sodium:dicarboxylate symporter activity, 0006835 dicarboxylic acid transport, 0016020 membrane; PDB: 3V8G_B 1XFH_A 3KBC_B 2NWX_B 3V8F_B 2NWL_B 2NWW_A.
Probab=50.28 E-value=94 Score=23.88 Aligned_cols=66 Identities=12% Similarity=0.104 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhhccccCchHHHHHHHHHHHHHHHHHHHHhHhhHHHhhhhhchhhh-chhhHHHHHHHH
Q psy14035 20 VFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMTITTWVICAGIFRISSSGKHELSL-AVRPIELLLREI 88 (90)
Q Consensus 20 IiFsil~Gial~~~~~~~~~l~~~~~~l~~~~~~iv~~Im~~aPiGIf~L~~~~~~~-~~~~~~~l~~~~ 88 (90)
++.+++.|++++.. +..+...+.++-..+...+.++.+ ..|+=.+++..-+.+. +....+.++++.
T Consensus 5 ilia~vlGi~~G~~-~~~~~~~~~l~~~G~lfi~ll~~~--v~PLVf~sii~gi~~l~~~~~~g~i~~~~ 71 (390)
T PF00375_consen 5 ILIAIVLGILLGLI-DFSPEAAQWLSFPGDLFIRLLKML--VLPLVFSSIISGIASLGDAKKLGRIGGRT 71 (390)
T ss_dssp HHHHHHHHHHHHHH-TTHHHHHHHTHHHHHHHHHHHHHH--HHHHHHHHHHHHCHSHT-TTSHHHHHHHH
T ss_pred HHHHHHHHHHHHhH-HhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhccCCccccccccHHHHH
Confidence 55677777777654 345566777778888888888776 3677333332222333 255666666554
No 12
>PF04346 EutH: Ethanolamine utilisation protein, EutH; InterPro: IPR007441 EutH is a bacterial membrane protein whose molecular function is unknown. It has been suggested that it may act as an ethanolamine transporter, responsible for carrying ethanolamine from the periplasm to the cytoplasm [].; GO: 0006810 transport, 0016021 integral to membrane
Probab=48.04 E-value=70 Score=25.15 Aligned_cols=40 Identities=15% Similarity=0.389 Sum_probs=28.3
Q ss_pred CchHHHHHHHHHHHHHHhhccccCchHHHHHHHHHHHHHHHHH
Q psy14035 14 SNVLGLVFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMTITT 56 (90)
Q Consensus 14 ~niL~vIiFsil~Gial~~~~~~~~~l~~~~~~l~~~~~~iv~ 56 (90)
.|++++++||+++.+.+...+ +.+.+.|....+.+..+..
T Consensus 170 ~Nl~Pvii~~~lla~GL~~~p---~~mIkgF~~fGk~i~~~~~ 209 (354)
T PF04346_consen 170 INLIPVIIFAILLAIGLWFFP---EKMIKGFNIFGKFIVILIT 209 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHH
Confidence 489999999999999997664 3556666655555544433
No 13
>COG1301 GltP Na+/H+-dicarboxylate symporters [Energy production and conversion]
Probab=46.96 E-value=98 Score=24.70 Aligned_cols=54 Identities=9% Similarity=0.147 Sum_probs=34.6
Q ss_pred chHHHHHHHHHHHHHHhhc-cccCchHHHHHHHHHHHHHHHHHHHHhHhhHHHhhh-hhc
Q psy14035 15 NVLGLVFFSIAMGIAIARI-GKAGKPLLSVFESLSEVVMTITTWVICAGIFRISSS-GKH 72 (90)
Q Consensus 15 niL~vIiFsil~Gial~~~-~~~~~~l~~~~~~l~~~~~~iv~~Im~~aPiGIf~L-~~~ 72 (90)
++..=++.++++|+.++.. ++... ...++-+.+.+.++++++ ..|+=+|++ ..+
T Consensus 7 ~l~~qv~iglilGi~~Gl~~~~~~~--~~~l~plg~~Fi~Likmi--i~PlVf~tlv~gI 62 (415)
T COG1301 7 SLYLQVLIGLILGILVGLFLPELGA--AIYLKPLGDIFIKLIKMI--IIPLVFFTLVLGI 62 (415)
T ss_pred cHHHHHHHHHHHHHHHHhhccccch--hhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 3444466777777777665 33322 556667788888887765 468777777 444
No 14
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=44.93 E-value=14 Score=19.04 Aligned_cols=11 Identities=45% Similarity=0.739 Sum_probs=7.9
Q ss_pred hHHHHHHHHHH
Q psy14035 16 VLGLVFFSIAM 26 (90)
Q Consensus 16 iL~vIiFsil~ 26 (90)
.+++++||++|
T Consensus 13 tlgiiFFAIfF 23 (31)
T PRK11875 13 ALVTLFFAIAF 23 (31)
T ss_pred HHHHHHHhhhc
Confidence 46778888765
No 15
>PRK15086 ethanolamine utilization protein EutH; Provisional
Probab=43.74 E-value=90 Score=24.75 Aligned_cols=36 Identities=14% Similarity=0.421 Sum_probs=25.4
Q ss_pred CchHHHHHHHHHHHHHHhhccccCchHHHHHHHHHHHHH
Q psy14035 14 SNVLGLVFFSIAMGIAIARIGKAGKPLLSVFESLSEVVM 52 (90)
Q Consensus 14 ~niL~vIiFsil~Gial~~~~~~~~~l~~~~~~l~~~~~ 52 (90)
-|++++++||+++.+.+...+ +.+.+.|....+.+.
T Consensus 171 ~NL~Piii~~illa~GL~~~p---~~mIkgF~~FGk~i~ 206 (372)
T PRK15086 171 RNLIPVIIFAILLALGLKFIP---EKMIKGFLIFGKFIV 206 (372)
T ss_pred HHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 389999999999999987665 345555554444443
No 16
>PRK13628 serine/threonine transporter SstT; Provisional
Probab=42.93 E-value=71 Score=25.09 Aligned_cols=64 Identities=13% Similarity=0.148 Sum_probs=44.6
Q ss_pred CcchhhhcccccCCchHHHHHHHHHHHHHHhhccccCchHHHHHHHHHHHHHHHHHHHHhHhhHHHhhh
Q psy14035 1 MKLWQMRGEWVVGSNVLGLVFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMTITTWVICAGIFRISSS 69 (90)
Q Consensus 1 ~~~~~~~~~~~~~~niL~vIiFsil~Gial~~~~~~~~~l~~~~~~l~~~~~~iv~~Im~~aPiGIf~L 69 (90)
|||..+.-.+..+.+...-++.+++.|+.++..-. ...++++-+.++..+++++++ .|+=.+++
T Consensus 1 ~~~~~~~~~~~~~~~l~~~ilig~vlGi~~G~~~~---~~~~~l~~iG~iFl~llkmiV--~PLVf~sI 64 (402)
T PRK13628 1 MQQMSGLLRRLARGSLVKQILIGLVLGILLALLSP---PAAEAVGLLGTLFVGALKAVA--PILVFVLV 64 (402)
T ss_pred CcchHHHHHHHhhccHHHHHHHHHHHHHHHHHhhH---HHHHHHhccHHHHHHHHHHHH--HHHHHHHH
Confidence 45555555566667777788889999998875521 234667778899999999866 66655545
No 17
>CHL00031 psbT photosystem II protein T
Probab=40.02 E-value=14 Score=19.36 Aligned_cols=11 Identities=45% Similarity=1.056 Sum_probs=7.5
Q ss_pred hHHHHHHHHHH
Q psy14035 16 VLGLVFFSIAM 26 (90)
Q Consensus 16 iL~vIiFsil~ 26 (90)
.+++++||++|
T Consensus 13 tlgilFFAI~F 23 (33)
T CHL00031 13 TLGIIFFAIFF 23 (33)
T ss_pred HHHHHHHhhee
Confidence 46777777665
No 18
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbT found in PSII, which is thought to be associated with the D1 (PsbA) - D2 (PsbD) heterodimer. PsbT may be involved in the formation and/or stabilisation of dimeric PSII complexes, because in the absence of this protein dimeric PSII complexes were found to be less abundant. Furthermore, although PsbT does not confer photo-protection, it is required for the efficient recovery of photo-damaged PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3BZ1_T 1S5L_t 2AXT_t 3KZI_T 3PRQ_T 3BZ2_T 3PRR_T 4FBY_g 3A0H_t 3A0B_T ....
Probab=38.29 E-value=20 Score=18.29 Aligned_cols=11 Identities=45% Similarity=1.017 Sum_probs=7.7
Q ss_pred hHHHHHHHHHH
Q psy14035 16 VLGLVFFSIAM 26 (90)
Q Consensus 16 iL~vIiFsil~ 26 (90)
.+++++||++|
T Consensus 13 tlgilffAI~F 23 (29)
T PF01405_consen 13 TLGILFFAIFF 23 (29)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHhhhhc
Confidence 46778888764
No 19
>PF06610 DUF1144: Protein of unknown function (DUF1144); InterPro: IPR010574 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.22 E-value=1.1e+02 Score=20.99 Aligned_cols=18 Identities=22% Similarity=0.595 Sum_probs=15.0
Q ss_pred CCchHHHHHHHHHHHHHH
Q psy14035 13 GSNVLGLVFFSIAMGIAI 30 (90)
Q Consensus 13 ~~niL~vIiFsil~Gial 30 (90)
-.+..+.++|+.+.|..+
T Consensus 13 ~ADTfAmVvf~~v~gm~i 30 (143)
T PF06610_consen 13 AADTFAMVVFCFVTGMLI 30 (143)
T ss_pred HHhHHHHHHHHHHHHHHH
Confidence 347789999999999876
No 20
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=23.66 E-value=2e+02 Score=21.93 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=26.3
Q ss_pred CCchHHHHHHHHHHHHHHhhc--cccCchHHHHHHHHHHHH
Q psy14035 13 GSNVLGLVFFSIAMGIAIARI--GKAGKPLLSVFESLSEVV 51 (90)
Q Consensus 13 ~~niL~vIiFsil~Gial~~~--~~~~~~l~~~~~~l~~~~ 51 (90)
-+..-++++.++++|++++.. +.+.+.+++-.+......
T Consensus 73 v~~~~G~~~v~liLgl~ig~p~~krkek~~iee~e~~~q~~ 113 (279)
T PF07271_consen 73 VGGSAGLLAVALILGLAIGIPIYKRKEKRMIEEKEEHEQLA 113 (279)
T ss_pred ccchhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHH
Confidence 345678899999999998654 444566666666544443
No 21
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=23.51 E-value=75 Score=18.87 Aligned_cols=20 Identities=5% Similarity=0.321 Sum_probs=16.2
Q ss_pred CchHHHHHHHHHHHHHHhhc
Q psy14035 14 SNVLGLVFFSIAMGIAIARI 33 (90)
Q Consensus 14 ~niL~vIiFsil~Gial~~~ 33 (90)
++++|+++.+.++.+.++-+
T Consensus 4 ~DiiQii~l~AlI~~pLGyl 23 (62)
T PF11120_consen 4 SDIIQIIILCALIFFPLGYL 23 (62)
T ss_pred HHHHHHHHHHHHHHHhHHHH
Confidence 47899999999888887655
No 22
>PF01901 DUF70: Protein of unknown function DUF70; InterPro: IPR002760 This family contains archaebacterial proteins of unknown function. Members of this family may be transmembrane proteins.
Probab=22.88 E-value=2.3e+02 Score=21.99 Aligned_cols=48 Identities=17% Similarity=0.307 Sum_probs=33.4
Q ss_pred hhcccccCCchHHHHHHHHHHHHHHhhccccCchHHHHHHHHHHHHHH
Q psy14035 6 MRGEWVVGSNVLGLVFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMT 53 (90)
Q Consensus 6 ~~~~~~~~~niL~vIiFsil~Gial~~~~~~~~~l~~~~~~l~~~~~~ 53 (90)
.-|+.--|-.++++++++.++|.......+..+..+++....+.++..
T Consensus 257 ifG~~~lDFGl~Gv~~~~~llG~~l~~~y~~~~~~~~iy~~~ysilla 304 (332)
T PF01901_consen 257 IFGPMYLDFGLLGVLIEMFLLGFILGLIYKISKSLKGIYIIYYSILLA 304 (332)
T ss_pred eEcHHHHhchHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHH
Confidence 345555577799999999999999988866555555555555554433
No 23
>PF05024 Gpi1: N-acetylglucosaminyl transferase component (Gpi1); InterPro: IPR007720 Glycosylphosphatidylinositol (GPI) represents an important anchoring molecule for cell surface proteins. The first step in its synthesis is the transfer of N-acetylglucosamine (GlcNAc) from UDP-N-acetylglucosamine to phosphatidylinositol (PI). This chemically simple step is genetically complex because three or four genes are required in both Saccharomyces cerevisiae (GPI1, GPI2 and GPI3) and mammals (GPI1, PIG A, PIG H and PIG C), respectively [].; GO: 0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity, 0006506 GPI anchor biosynthetic process, 0016021 integral to membrane
Probab=22.69 E-value=1.9e+02 Score=20.30 Aligned_cols=51 Identities=14% Similarity=0.350 Sum_probs=29.3
Q ss_pred chHHHHHHHHHHHHHHhhc-cccCchH----HHHHH-HHHHHHHHHHHHHHhHhhHHH
Q psy14035 15 NVLGLVFFSIAMGIAIARI-GKAGKPL----LSVFE-SLSEVVMTITTWVICAGIFRI 66 (90)
Q Consensus 15 niL~vIiFsil~Gial~~~-~~~~~~l----~~~~~-~l~~~~~~iv~~Im~~aPiGI 66 (90)
|.+-.++.=+++|+++... .+..+.+ .+..+ ...+.+.+.+.|.+. -|.|.
T Consensus 4 N~iwli~nDi~lG~~l~~~L~~~~~~i~~~~~~~~~~~~~~~l~~~i~WL~~-~PaGl 60 (189)
T PF05024_consen 4 NTIWLIANDILLGVLLGLLLSENRESIASFLHRLLEFYLVDSLKSLIEWLMG-NPAGL 60 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCee
Confidence 3344455556666666554 2333333 33333 466677788888886 77663
No 24
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=20.93 E-value=1e+02 Score=24.12 Aligned_cols=35 Identities=14% Similarity=0.296 Sum_probs=25.5
Q ss_pred chHHHHHHHHHHHHHHhhccccCchHHHHHHHHHH
Q psy14035 15 NVLGLVFFSIAMGIAIARIGKAGKPLLSVFESLSE 49 (90)
Q Consensus 15 niL~vIiFsil~Gial~~~~~~~~~l~~~~~~l~~ 49 (90)
-.++++.+|+++++.+++++++...-.+|++.+.+
T Consensus 32 Ysig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q 66 (336)
T PF07168_consen 32 YSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQ 66 (336)
T ss_pred HHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhc
Confidence 46889999999999999998654444445555443
Done!