Query psy14035
Match_columns 90
No_of_seqs 155 out of 1028
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 17:57:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14035.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14035hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nwl_A GLTPH, glutamate sympor 99.6 2.9E-15 1E-19 115.4 6.0 75 12-86 147-230 (422)
2 3arc_T Photosystem II reaction 48.3 7.7 0.00026 19.5 1.2 11 16-26 13-23 (32)
3 3t7z_A Nucleolar protein NOP 5 22.5 5.1 0.00017 25.8 -2.6 10 60-69 5-14 (119)
4 2lat_A Dolichyl-diphosphooligo 11.9 1.8E+02 0.0061 14.7 2.2 12 19-30 7-18 (37)
5 2z5k_B Nuclear RNA export fact 8.8 46 0.0016 16.1 -0.7 7 60-66 19-25 (30)
6 1kf6_C Fumarate reductase 15 k 8.5 2.3E+02 0.0077 18.3 2.3 37 13-49 29-65 (130)
7 3nd0_A SLL0855 protein; CLC fa 7.0 7.8E+02 0.027 18.4 5.4 39 13-54 25-63 (466)
8 2nwl_A GLTPH, glutamate sympor 6.9 7.6E+02 0.026 18.3 7.9 53 15-69 11-66 (422)
9 3zux_A Transporter, ASBTNM; tr 6.9 3.7E+02 0.013 19.1 3.1 29 1-30 6-34 (332)
10 3pp5_A BRK1, protein brick1; t 6.7 4.3E+02 0.015 15.2 3.6 22 41-62 19-40 (73)
No 1
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=99.56 E-value=2.9e-15 Score=115.39 Aligned_cols=75 Identities=24% Similarity=0.318 Sum_probs=66.4
Q ss_pred cCCchHHHHHHHHHHHHHHhhcc--------ccCchHHHHHHHHHHHHHHHHHHHHhHhhHHHhhh-hhchhhhchhhHH
Q psy14035 12 VGSNVLGLVFFSIAMGIAIARIG--------KAGKPLLSVFESLSEVVMTITTWVICAGIFRISSS-GKHELSLAVRPIE 82 (90)
Q Consensus 12 ~~~niL~vIiFsil~Gial~~~~--------~~~~~l~~~~~~l~~~~~~iv~~Im~~aPiGIf~L-~~~~~~~~~~~~~ 82 (90)
+++|++|+++||+++|+++...+ |+++++.+++++++++++|+++|+|+++|+||||+ +++.++.+.+.+.
T Consensus 147 a~~~~L~vivfai~~Gial~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~kiv~~im~laPigvf~lia~~~~~~g~~~l~ 226 (422)
T 2nwl_A 147 ANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVG 226 (422)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHTTTGGGCCT
T ss_pred hhhchHHHHHHHHHHHHHHHHcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999987 66789999999999999999999999999999999 9997776666555
Q ss_pred HHHH
Q psy14035 83 LLLR 86 (90)
Q Consensus 83 ~l~~ 86 (90)
.++.
T Consensus 227 ~l~~ 230 (422)
T 2nwl_A 227 ELAK 230 (422)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 2
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=48.31 E-value=7.7 Score=19.47 Aligned_cols=11 Identities=36% Similarity=0.875 Sum_probs=7.9
Q ss_pred hHHHHHHHHHH
Q psy14035 16 VLGLVFFSIAM 26 (90)
Q Consensus 16 iL~vIiFsil~ 26 (90)
.|++++||++|
T Consensus 13 tlgiiFFAI~F 23 (32)
T 3arc_T 13 IIALFFFAIFF 23 (32)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHhhhh
Confidence 46788888765
No 3
>3t7z_A Nucleolar protein NOP 56/58; alpha beta fold, RNP assembly and methylation, L7AE, box C/D protein binding; 1.70A {Methanocaldococcus jannaschii}
Probab=22.46 E-value=5.1 Score=25.78 Aligned_cols=10 Identities=0% Similarity=-0.217 Sum_probs=8.9
Q ss_pred hHhhHHHhhh
Q psy14035 60 CAGIFRISSS 69 (90)
Q Consensus 60 ~~aPiGIf~L 69 (90)
.++|+|+|++
T Consensus 5 ~f~PfGaF~~ 14 (119)
T 3t7z_A 5 TFTPYGAFGV 14 (119)
T ss_dssp EEETTEEEEE
T ss_pred Eeeccceeee
Confidence 4799999999
No 4
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=11.92 E-value=1.8e+02 Score=14.73 Aligned_cols=12 Identities=25% Similarity=0.725 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q psy14035 19 LVFFSIAMGIAI 30 (90)
Q Consensus 19 vIiFsil~Gial 30 (90)
+-.|+..+|+++
T Consensus 7 L~~lan~lG~~~ 18 (37)
T 2lat_A 7 LAIFANMLGVSL 18 (37)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344555555554
No 5
>2z5k_B Nuclear RNA export factor 1; nuclear transport, importin, exportin, karyopherin, nucleocytoplasmic, TAP, NLS; 2.60A {Homo sapiens} PDB: 2z5m_B
Probab=8.76 E-value=46 Score=16.12 Aligned_cols=7 Identities=0% Similarity=-0.107 Sum_probs=4.2
Q ss_pred hHhhHHH
Q psy14035 60 CAGIFRI 66 (90)
Q Consensus 60 ~~aPiGI 66 (90)
+++||++
T Consensus 19 RytPY~~ 25 (30)
T 2z5k_B 19 RYNPYTT 25 (30)
T ss_pred cccCccc
Confidence 5666654
No 6
>1kf6_C Fumarate reductase 15 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_C* 1l0v_C* 2b76_C* 3cir_C* 3p4p_C* 3p4q_C* 3p4r_C* 3p4s_C*
Probab=8.48 E-value=2.3e+02 Score=18.29 Aligned_cols=37 Identities=14% Similarity=0.233 Sum_probs=22.9
Q ss_pred CCchHHHHHHHHHHHHHHhhccccCchHHHHHHHHHH
Q psy14035 13 GSNVLGLVFFSIAMGIAIARIGKAGKPLLSVFESLSE 49 (90)
Q Consensus 13 ~~niL~vIiFsil~Gial~~~~~~~~~l~~~~~~l~~ 49 (90)
|+.-++++.||+++=+.+..+++..+.-.+|++.++.
T Consensus 29 E~T~v~~~wf~l~Ll~Gl~~L~~G~~aw~~fv~fl~n 65 (130)
T 1kf6_C 29 EGTAVPAVWFSIELIFGLFALKNGPEAWAGFVDFLQN 65 (130)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTS
T ss_pred HHhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhC
Confidence 6778899999987766665554433344444444443
No 7
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=6.97 E-value=7.8e+02 Score=18.41 Aligned_cols=39 Identities=13% Similarity=0.132 Sum_probs=24.0
Q ss_pred CCchHHHHHHHHHHHHHHhhccccCchHHHHHHHHHHHHHHH
Q psy14035 13 GSNVLGLVFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMTI 54 (90)
Q Consensus 13 ~~niL~vIiFsil~Gial~~~~~~~~~l~~~~~~l~~~~~~i 54 (90)
+.+.+..++.+++.|+..... .-.+...++.+++.....
T Consensus 25 ~~~~~~l~l~~~liGi~~Gl~---~~~f~~~l~~~~~~~~~~ 63 (466)
T 3nd0_A 25 RSLHPRTLVAAIVVGLITGVL---GAGFKSAVNNMLQWRSQL 63 (466)
T ss_dssp -CCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 456778899999999987654 223444445554444443
No 8
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=6.94 E-value=7.6e+02 Score=18.30 Aligned_cols=53 Identities=11% Similarity=0.247 Sum_probs=32.5
Q ss_pred chHHHHHHHHHHHHHHhhc-cc--cCchHHHHHHHHHHHHHHHHHHHHhHhhHHHhhh
Q psy14035 15 NVLGLVFFSIAMGIAIARI-GK--AGKPLLSVFESLSEVVMTITTWVICAGIFRISSS 69 (90)
Q Consensus 15 niL~vIiFsil~Gial~~~-~~--~~~~l~~~~~~l~~~~~~iv~~Im~~aPiGIf~L 69 (90)
+...-++.++++|+.++.. ++ ..+...++++-+.+...+++++++ .|+=++++
T Consensus 11 ~l~~~ili~lvlGi~~G~~~~~~~~~~~~~~~~~~~G~lFi~llkmiv--~PLVf~si 66 (422)
T 2nwl_A 11 PVLIKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLV--MPIVFASL 66 (422)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHTTTHHHHHHHTHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 3444456677777766544 22 111234567888888888888764 57766666
No 9
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=6.92 E-value=3.7e+02 Score=19.10 Aligned_cols=29 Identities=10% Similarity=0.086 Sum_probs=12.4
Q ss_pred CcchhhhcccccCCchHHHHHHHHHHHHHH
Q psy14035 1 MKLWQMRGEWVVGSNVLGLVFFSIAMGIAI 30 (90)
Q Consensus 1 ~~~~~~~~~~~~~~niL~vIiFsil~Gial 30 (90)
|+.+++...+. ++...-.++.++++|...
T Consensus 6 m~~l~~~~~~l-~~~~~l~i~~~~~lg~~~ 34 (332)
T 3zux_A 6 MNILSKISSFI-GKTFSLWAALFAAAAFFA 34 (332)
T ss_dssp -CHHHHHHHHH-HHTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHc
Confidence 34444444443 233333444455555443
No 10
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=6.73 E-value=4.3e+02 Score=15.21 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHh
Q psy14035 41 LSVFESLSEVVMTITTWVICAG 62 (90)
Q Consensus 41 ~~~~~~l~~~~~~iv~~Im~~a 62 (90)
+++++.++.-+.+++.++-+|+
T Consensus 19 Re~ie~is~~I~~~v~FLN~F~ 40 (73)
T 3pp5_A 19 REFIEDMSINIQKIVEFLNKFE 40 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888888888775
Done!