RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy14035
         (90 letters)



>gnl|CDD|215884 pfam00375, SDF, Sodium:dicarboxylate symporter family. 
          Length = 388

 Score = 52.9 bits (128), Expect = 9e-10
 Identities = 23/46 (50%), Positives = 33/46 (71%)

Query: 14  SNVLGLVFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMTITTWVI 59
            NVL ++ F+I  GIA+A +G+ GKPLL   ESL+EV+M +  WV+
Sbjct: 134 GNVLQVIVFAILFGIALAALGEKGKPLLKFLESLNEVIMKVVNWVM 179


>gnl|CDD|224220 COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production
           and conversion].
          Length = 415

 Score = 46.1 bits (110), Expect = 2e-07
 Identities = 21/46 (45%), Positives = 35/46 (76%), Gaps = 1/46 (2%)

Query: 15  NVLGLVFFSIAMGIAIARIGKAGKP-LLSVFESLSEVVMTITTWVI 59
           NVL ++FF+I  G+A+A +G+ GKP + ++FESLSE +  +T +V+
Sbjct: 143 NVLQILFFAILFGLALAALGEKGKPPVENLFESLSEAMFKVTNFVM 188


>gnl|CDD|234968 PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed.
          Length = 428

 Score = 39.5 bits (93), Expect = 5e-05
 Identities = 16/40 (40%), Positives = 27/40 (67%)

Query: 15  NVLGLVFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMTI 54
           ++L ++ F++  G A+AR+G+ GKP+    ESLS V+  I
Sbjct: 149 DILQVLLFAVLFGFALARLGEKGKPVFDFIESLSHVLFGI 188


>gnl|CDD|183850 PRK13027, PRK13027, C4-dicarboxylate transporter DctA; Reviewed.
          Length = 421

 Score = 34.3 bits (79), Expect = 0.003
 Identities = 12/45 (26%), Positives = 27/45 (60%)

Query: 15  NVLGLVFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMTITTWVI 59
           ++L ++ FS+  G A++ +G+  K +  + + LS V+  I  ++I
Sbjct: 149 DILQVLLFSVLFGSALSLLGERAKRVNRLIDELSHVLFRIMGFII 193


>gnl|CDD|185273 PRK15375, PRK15375, pathogenicity island 1 effector protein StpP;
           Provisional.
          Length = 535

 Score = 28.6 bits (63), Expect = 0.39
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 55  TTWVICAGIFR--ISSSGKHELSLAVRPIELLLREIIN 90
           + W  C G     +  +  HEL+ AV+ I ++ +E+ N
Sbjct: 237 SQWGTCGGEVERWVDKASTHELTQAVKKIHVIAKELKN 274


>gnl|CDD|183075 PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional.
          Length = 437

 Score = 27.4 bits (61), Expect = 0.87
 Identities = 13/41 (31%), Positives = 27/41 (65%), Gaps = 1/41 (2%)

Query: 16  VLGLVFFSIAMGIAIARIGKAGK-PLLSVFESLSEVVMTIT 55
           +L ++FFS+  G+ ++ +    + PL++VF S+SE +  +T
Sbjct: 160 MLPIIFFSVLFGLGLSSLPATHREPLVTVFRSVSETMFKVT 200


>gnl|CDD|226159 COG3633, SstT, Na+/serine symporter [Amino acid transport and
           metabolism].
          Length = 407

 Score = 27.0 bits (60), Expect = 1.5
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 6/58 (10%)

Query: 15  NVLGLVFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMTITTWVIC---AGIFRISSS 69
           N +G++ ++I +G+A+       K   ++   LSE V  I   VI     GIF + +S
Sbjct: 146 NYIGILAWAIGLGLALRHASDTTK---NLVNDLSEAVSKIVKVVIRFAPIGIFGLVAS 200


>gnl|CDD|184190 PRK13628, PRK13628, serine/threonine transporter SstT; Provisional.
          Length = 402

 Score = 26.4 bits (59), Expect = 2.0
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 6/53 (11%)

Query: 15  NVLGLVFFSIAMGIAIARIGKAGKPLLSVFESLSEVVMTITTWVI-CA--GIF 64
           N +G++ ++I +G+A+       K   +V   LSE V  I  WVI  A  GIF
Sbjct: 146 NYIGILAWAIGLGLALRHASDTTK---NVVNDLSEAVSQIVKWVIRFAPIGIF 195


>gnl|CDD|224736 COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General
           function prediction only].
          Length = 458

 Score = 26.6 bits (59), Expect = 2.1
 Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 15  NVLGLVFFSIAMGIAIARIGK----AGKPLLSVFESLSEVVMTITTWVI 59
           +++ +V F+  +GIA  ++ K     G+   +  ++L  +VM +   VI
Sbjct: 186 SIIAVVIFAAFLGIAALKLSKKDPEKGERFKAAIDTLQSIVMKLVRLVI 234


>gnl|CDD|235223 PRK04132, PRK04132, replication factor C small subunit;
           Provisional.
          Length = 846

 Score = 25.6 bits (56), Expect = 4.1
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 25  AMGIAIARIGKAGKPLLSVFESLSEVVMTITTWVICAGIFRISSSGKHELSLAVRPIEL- 83
           A+GI + +  +A +     + S +E+   + TW     I   S++ + E    +R IEL 
Sbjct: 455 ALGINLEKTIEAMRIFAKKYSSYAEIGRMLGTWNSSVKIILESNTQEIEKLEEIRKIELK 514

Query: 84  LLREIIN 90
           L++EI+N
Sbjct: 515 LIKEILN 521


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.327    0.140    0.417 

Gapped
Lambda     K      H
   0.267   0.0674    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,702,830
Number of extensions: 388118
Number of successful extensions: 657
Number of sequences better than 10.0: 1
Number of HSP's gapped: 654
Number of HSP's successfully gapped: 52
Length of query: 90
Length of database: 10,937,602
Length adjustment: 58
Effective length of query: 32
Effective length of database: 8,365,070
Effective search space: 267682240
Effective search space used: 267682240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.3 bits)